Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88522.t1 | XP_024637017.1 | 97.1 | 241 | 7 | 0 | 1 | 241 | 53 | 293 | 8.90E-130 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88522.t1 | P51281 | 62.7 | 241 | 88 | 1 | 1 | 241 | 13 | 251 | 1.0e-81 | 304.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88522.t1 | A0A072VN28 | 97.1 | 241 | 7 | 0 | 1 | 241 | 336 | 576 | 6.4e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene88522 | 0.801544 | 8.57E-49 | -1.69E-46 |
| MS.gene049260 | MS.gene88522 | 0.821293 | 4.36E-53 | -1.69E-46 |
| MS.gene049297 | MS.gene88522 | 0.835559 | 1.56E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene88522 | 0.854675 | 1.05E-61 | -1.69E-46 |
| MS.gene049910 | MS.gene88522 | 0.811331 | 7.39E-51 | -1.69E-46 |
| MS.gene049915 | MS.gene88522 | 0.802951 | 4.40E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene88522 | 0.83048 | 2.87E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene88522 | 0.806701 | 7.24E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene88522 | 0.855687 | 5.34E-62 | -1.69E-46 |
| MS.gene050319 | MS.gene88522 | -0.808202 | 3.48E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene88522 | -0.805204 | 1.49E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene88522 | 0.835843 | 1.32E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene88522 | 0.810927 | 9.04E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene88522 | 0.802786 | 4.76E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene88522 | 0.840599 | 7.89E-58 | -1.69E-46 |
| MS.gene051663 | MS.gene88522 | 0.865714 | 4.83E-65 | -1.69E-46 |
| MS.gene051860 | MS.gene88522 | 0.839149 | 1.88E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene88522 | 0.820406 | 6.97E-53 | -1.69E-46 |
| MS.gene052178 | MS.gene88522 | 0.811187 | 7.94E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene88522 | 0.809671 | 1.69E-50 | -1.69E-46 |
| MS.gene052207 | MS.gene88522 | 0.834171 | 3.50E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene88522 | 0.889986 | 1.48E-73 | -1.69E-46 |
| MS.gene054011 | MS.gene88522 | 0.81107 | 8.41E-51 | -1.69E-46 |
| MS.gene054184 | MS.gene88522 | 0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene88522 | 0.820968 | 5.18E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene88522 | 0.841381 | 4.92E-58 | -1.69E-46 |
| MS.gene054542 | MS.gene88522 | 0.812147 | 4.91E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene88522 | 0.800971 | 1.12E-48 | -1.69E-46 |
| MS.gene054667 | MS.gene88522 | 0.804385 | 2.22E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene88522 | 0.814022 | 1.90E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene88522 | 0.842395 | 2.65E-58 | -1.69E-46 |
| MS.gene054983 | MS.gene88522 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene88522 | 0.82884 | 7.19E-55 | -1.69E-46 |
| MS.gene055390 | MS.gene88522 | 0.83564 | 1.49E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene88522 | 0.856389 | 3.33E-62 | -1.69E-46 |
| MS.gene055428 | MS.gene88522 | 0.846742 | 1.79E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene88522 | 0.826275 | 2.97E-54 | -1.69E-46 |
| MS.gene055712 | MS.gene88522 | 0.844744 | 6.25E-59 | -1.69E-46 |
| MS.gene056069 | MS.gene88522 | -0.825611 | 4.27E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene88522 | 0.818021 | 2.44E-52 | -1.69E-46 |
| MS.gene056875 | MS.gene88522 | 0.836609 | 8.47E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene88522 | 0.814884 | 1.23E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene88522 | 0.838264 | 3.19E-57 | -1.69E-46 |
| MS.gene057245 | MS.gene88522 | 0.826566 | 2.53E-54 | -1.69E-46 |
| MS.gene057260 | MS.gene88522 | 0.822493 | 2.30E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene88522 | 0.853336 | 2.56E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene88522 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene88522 | 0.819501 | 1.12E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene88522 | 0.859518 | 3.91E-63 | -1.69E-46 |
| MS.gene05811 | MS.gene88522 | 0.874092 | 8.85E-68 | -1.69E-46 |
| MS.gene058142 | MS.gene88522 | 0.812889 | 3.38E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene88522 | 0.807154 | 5.81E-50 | -1.69E-46 |
| MS.gene058749 | MS.gene88522 | 0.833524 | 5.08E-56 | -1.69E-46 |
| MS.gene058845 | MS.gene88522 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene88522 | 0.853144 | 2.90E-61 | -1.69E-46 |
| MS.gene059518 | MS.gene88522 | 0.841863 | 3.67E-58 | -1.69E-46 |
| MS.gene059597 | MS.gene88522 | 0.813 | 3.19E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene88522 | 0.830545 | 2.76E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene88522 | 0.814939 | 1.19E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene88522 | 0.851539 | 8.31E-61 | -1.69E-46 |
| MS.gene060476 | MS.gene88522 | 0.829292 | 5.59E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene88522 | 0.846134 | 2.63E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88522.t1 | MTR_1g076810 | 97.095 | 241 | 7 | 0 | 1 | 241 | 336 | 576 | 2.98e-167 | 478 |
| MS.gene88522.t1 | MTR_8g463650 | 56.017 | 241 | 104 | 1 | 1 | 241 | 74 | 312 | 1.18e-92 | 280 |
| MS.gene88522.t1 | MTR_8g463650 | 56.017 | 241 | 104 | 1 | 1 | 241 | 74 | 312 | 2.51e-92 | 280 |
| MS.gene88522.t1 | MTR_8g463650 | 56.017 | 241 | 104 | 1 | 1 | 241 | 74 | 312 | 3.79e-92 | 282 |
| MS.gene88522.t1 | MTR_8g463650 | 56.017 | 241 | 104 | 1 | 1 | 241 | 74 | 312 | 9.00e-91 | 281 |
| MS.gene88522.t1 | MTR_1g111400 | 56.846 | 241 | 102 | 1 | 1 | 241 | 92 | 330 | 1.03e-87 | 269 |
| MS.gene88522.t1 | MTR_1g111400 | 56.846 | 241 | 102 | 1 | 1 | 241 | 92 | 330 | 3.95e-86 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88522.t1 | AT1G33290 | 78.423 | 241 | 52 | 0 | 1 | 241 | 52 | 292 | 2.55e-137 | 392 |
| MS.gene88522.t1 | AT1G33290 | 80.275 | 218 | 43 | 0 | 24 | 241 | 1 | 218 | 1.79e-127 | 364 |
| MS.gene88522.t1 | AT1G73170 | 55.602 | 241 | 105 | 1 | 1 | 241 | 87 | 325 | 2.50e-89 | 278 |
| MS.gene88522.t1 | AT1G73170 | 55.602 | 241 | 105 | 1 | 1 | 241 | 87 | 325 | 3.69e-89 | 278 |
| MS.gene88522.t1 | AT3G10420 | 56.017 | 241 | 104 | 1 | 1 | 241 | 103 | 341 | 2.42e-88 | 272 |
| MS.gene88522.t1 | AT1G33290 | 77.246 | 167 | 38 | 0 | 1 | 167 | 52 | 218 | 4.97e-88 | 264 |
| MS.gene88522.t1 | AT3G10420 | 56.017 | 241 | 104 | 1 | 1 | 241 | 103 | 341 | 2.22e-87 | 273 |
| MS.gene88522.t1 | AT1G73170 | 64.286 | 182 | 65 | 0 | 60 | 241 | 16 | 197 | 2.57e-78 | 246 |
| MS.gene88522.t1 | AT1G73170 | 62.745 | 51 | 19 | 0 | 191 | 241 | 1 | 51 | 3.47e-13 | 68.9 |
Find 63 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGAGCAGTTGGAGATTT+TGG | 0.126961 | 1.2:-63650264 | MS.gene88522:CDS |
| TCATCAGGTTATATTGGATT+TGG | 0.200322 | 1.2:-63650636 | MS.gene88522:intron |
| CATTCTTCATCAGGTTATAT+TGG | 0.246485 | 1.2:-63650642 | MS.gene88522:intron |
| ACCTAACCGCCCTCAACTTT+TGG | 0.250887 | 1.2:-63650836 | MS.gene88522:CDS |
| GAGCGAGGCATCATGCTTAT+AGG | 0.265973 | 1.2:-63649022 | MS.gene88522:CDS |
| CCTCAGAATTTCTTAGATAA+TGG | 0.274877 | 1.2:+63650573 | None:intergenic |
| ATCACCTCCAATTTCATTAC+TGG | 0.299857 | 1.2:+63649213 | None:intergenic |
| GTTGATACCAGTAATGAAAT+TGG | 0.304856 | 1.2:-63649220 | MS.gene88522:CDS |
| GTTTATGATCTGCTTCAATA+TGG | 0.323340 | 1.2:-63650117 | MS.gene88522:CDS |
| CATCAGGTTATATTGGATTT+GGG | 0.325306 | 1.2:-63650635 | MS.gene88522:intron |
| ATCACGCTATGTTGCATTGA+TGG | 0.341246 | 1.2:+63649136 | None:intergenic |
| TTGCCTAGATACCACGCTTC+AGG | 0.352168 | 1.2:+63650605 | None:intergenic |
| AGTAGGAATGGTGGCATTGT+TGG | 0.363900 | 1.2:-63650186 | MS.gene88522:CDS |
| GATCATAAACCATGTCAATA+TGG | 0.372234 | 1.2:+63650130 | None:intergenic |
| AGCGAGGCATCATGCTTATA+GGG | 0.403823 | 1.2:-63649021 | MS.gene88522:CDS |
| TTTCCTGAAGCGTGGTATCT+AGG | 0.404181 | 1.2:-63650608 | MS.gene88522:CDS |
| TGCACAGAATATCAGCAATA+AGG | 0.410002 | 1.2:-63650209 | MS.gene88522:CDS |
| TTGGTTTGACGTGTCGGATT+GGG | 0.436479 | 1.2:-63650167 | MS.gene88522:CDS |
| AATATTCCTCATGCAGCAAT+AGG | 0.447097 | 1.2:-63649187 | MS.gene88522:CDS |
| GATAATAGAGCTGGTATTGA+AGG | 0.452494 | 1.2:-63650237 | MS.gene88522:CDS |
| CGGATTGGGAGGGCTGTCAC+TGG | 0.472439 | 1.2:-63650153 | MS.gene88522:CDS |
| GATTCTTCCAGGCCTGGGGT+TGG | 0.476303 | 1.2:-63649406 | MS.gene88522:intron |
| GTTGGTTTGACGTGTCGGAT+TGG | 0.489931 | 1.2:-63650168 | MS.gene88522:CDS |
| TCCAAAAGTTGAGGGCGGTT+AGG | 0.499259 | 1.2:+63650835 | None:intergenic |
| GATACCACGCTTCAGGAAAA+CGG | 0.499913 | 1.2:+63650612 | None:intergenic |
| AGTAATGAAATTGGAGGTGA+TGG | 0.508241 | 1.2:-63649211 | MS.gene88522:CDS |
| GCATTGTTGGTTTGACGTGT+CGG | 0.509058 | 1.2:-63650173 | MS.gene88522:CDS |
| GTTTGACGTGTCGGATTGGG+AGG | 0.510749 | 1.2:-63650164 | MS.gene88522:CDS |
| GACCTACCTCCAAAAGTTGA+GGG | 0.510772 | 1.2:+63650827 | None:intergenic |
| GTGATTATAGTAGATGAGAT+TGG | 0.517092 | 1.2:-63649082 | MS.gene88522:CDS |
| TCATCTACTATAATCACCTC+AGG | 0.528346 | 1.2:+63649088 | None:intergenic |
| GAATATGCTGAAGGAGCAGT+TGG | 0.530400 | 1.2:-63650273 | MS.gene88522:CDS |
| ACAGTAGTCTTGCCAACCCC+AGG | 0.537874 | 1.2:+63649394 | None:intergenic |
| GCTATGTTGCATTGATGGCT+CGG | 0.540454 | 1.2:+63649141 | None:intergenic |
| AAAGTTGAGGGCGGTTAGGT+TGG | 0.545084 | 1.2:+63650839 | None:intergenic |
| TTTGGGAAGGATAATAGAGC+TGG | 0.546805 | 1.2:-63650246 | MS.gene88522:CDS |
| ATGCTTATAGGGACTGCTCA+TGG | 0.547544 | 1.2:-63649010 | MS.gene88522:CDS |
| CTAGGTAACAATGAGAGAGT+TGG | 0.547690 | 1.2:-63650295 | MS.gene88522:intron |
| AGGTGGTGCACGTAGAATGC+AGG | 0.554707 | 1.2:-63649167 | MS.gene88522:CDS |
| TTTGGATTCTTCCAGGCCTG+GGG | 0.555222 | 1.2:-63649410 | MS.gene88522:intron |
| GCAACATAGCGTGATGATTG+AGG | 0.555819 | 1.2:-63649128 | MS.gene88522:CDS |
| GAATCCTACGCTCTCTGACC+TGG | 0.561221 | 1.2:-63648963 | MS.gene88522:CDS |
| TGCCTCGCTCAGCAATCGAC+CGG | 0.568637 | 1.2:+63649035 | None:intergenic |
| GAATATCAGCAATAAGGAGT+AGG | 0.577619 | 1.2:-63650203 | MS.gene88522:CDS |
| TGCCGGTCGATTGCTGAGCG+AGG | 0.579543 | 1.2:-63649037 | MS.gene88522:CDS |
| GGACCTACCTCCAAAAGTTG+AGG | 0.588490 | 1.2:+63650826 | None:intergenic |
| AAGCTGAAGCTCATGCATGC+CGG | 0.588992 | 1.2:-63649054 | MS.gene88522:CDS |
| TGTCACTGGCCATATTGACA+TGG | 0.589779 | 1.2:-63650139 | MS.gene88522:CDS |
| TTTGACGTGTCGGATTGGGA+GGG | 0.591021 | 1.2:-63650163 | MS.gene88522:CDS |
| TCAGCAATAAGGAGTAGGAA+TGG | 0.597931 | 1.2:-63650198 | MS.gene88522:CDS |
| AGATTGTGATGCAAATCTGA+AGG | 0.626064 | 1.2:+63650868 | None:intergenic |
| ATTCCTCATGCAGCAATAGG+TGG | 0.626244 | 1.2:-63649184 | MS.gene88522:CDS |
| TATGATAATCAAAACGAACC+AGG | 0.631741 | 1.2:+63648945 | None:intergenic |
| AGAGAGTTGGAATATGCTGA+AGG | 0.635157 | 1.2:-63650282 | MS.gene88522:CDS |
| CCATTATCTAAGAAATTCTG+AGG | 0.637235 | 1.2:-63650573 | MS.gene88522:intron |
| AGATGAATTTCACAAAAGAG+TGG | 0.647161 | 1.2:-63649344 | MS.gene88522:intron |
| GCACCACCTATTGCTGCATG+AGG | 0.660141 | 1.2:+63649181 | None:intergenic |
| GCGTGGTATCTAGGCAAACA+CGG | 0.661479 | 1.2:-63650599 | MS.gene88522:CDS |
| GCAATAAGGAGTAGGAATGG+TGG | 0.666850 | 1.2:-63650195 | MS.gene88522:CDS |
| GATACCAGTAATGAAATTGG+AGG | 0.667560 | 1.2:-63649217 | MS.gene88522:CDS |
| CGAACCAGGTCAGAGAGCGT+AGG | 0.667831 | 1.2:+63648959 | None:intergenic |
| AGTAGAAAATCATATGCCTG+AGG | 0.712015 | 1.2:-63649104 | MS.gene88522:CDS |
| CTACCTCCAAAAGTTGAGGG+CGG | 0.712694 | 1.2:+63650830 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAATCATAAATTATTAAA+AGG | - | chr1.2:63650275-63650294 | MS.gene88522:CDS | 10.0% |
| !! | TAAAACTAAATAAGAAAAGT+GGG | + | chr1.2:63649365-63649384 | None:intergenic | 15.0% |
| !!! | CAATTTTATCATCTTATATT+TGG | - | chr1.2:63649828-63649847 | MS.gene88522:intron | 15.0% |
| !!! | TTATGATTCTATTTTGTTAT+TGG | + | chr1.2:63650266-63650285 | None:intergenic | 15.0% |
| !! | AACAAAGAGAGATAAATAAT+AGG | + | chr1.2:63648968-63648987 | None:intergenic | 20.0% |
| !! | ACAAAGAGAGATAAATAATA+GGG | + | chr1.2:63648967-63648986 | None:intergenic | 20.0% |
| !! | AGAATGAATTCTTTCAAATT+GGG | - | chr1.2:63650517-63650536 | MS.gene88522:intron | 20.0% |
| !! | CTAAAACTAAATAAGAAAAG+TGG | + | chr1.2:63649366-63649385 | None:intergenic | 20.0% |
| !! | GCTGTTAATTGTAATATATT+TGG | - | chr1.2:63649909-63649928 | MS.gene88522:intron | 20.0% |
| !! | GGAAAAATCTTATAGATTAT+TGG | + | chr1.2:63650858-63650877 | None:intergenic | 20.0% |
| !! | TACCATTTATAATAGATCAT+GGG | + | chr1.2:63650210-63650229 | None:intergenic | 20.0% |
| !! | TAGAATGAATTCTTTCAAAT+TGG | - | chr1.2:63650516-63650535 | MS.gene88522:intron | 20.0% |
| !! | TATAGTATAGTATACTATGT+CGG | + | chr1.2:63649085-63649104 | None:intergenic | 20.0% |
| !! | TCTAACTCATTATTACAAAA+CGG | + | chr1.2:63649278-63649297 | None:intergenic | 20.0% |
| !! | TTACCATTTATAATAGATCA+TGG | + | chr1.2:63650211-63650230 | None:intergenic | 20.0% |
| !!! | ATTAAATCTGTTTTATCTTG+TGG | + | chr1.2:63650017-63650036 | None:intergenic | 20.0% |
| !!! | TAAACTAAGCTTTAGAAATT+AGG | + | chr1.2:63649729-63649748 | None:intergenic | 20.0% |
| ! | AAAAAGAATGTTCTGTTCAA+AGG | - | chr1.2:63649412-63649431 | MS.gene88522:intron | 25.0% |
| ! | ATAATAAAGAAGTGATGCAT+TGG | + | chr1.2:63649321-63649340 | None:intergenic | 25.0% |
| ! | TGTAATATATTTGGTCTGTT+TGG | - | chr1.2:63649918-63649937 | MS.gene88522:intron | 25.0% |
| ! | TTATATTTGGTCTAAACATC+AGG | - | chr1.2:63649841-63649860 | MS.gene88522:intron | 25.0% |
| ! | TTCTTGCATCTCTTATAATT+TGG | - | chr1.2:63650341-63650360 | MS.gene88522:intron | 25.0% |
| !! | ATAATACTTCAAGTTCTAAC+CGG | - | chr1.2:63649748-63649767 | MS.gene88522:intron | 25.0% |
| !!! | AAGCTGTTTTAACAAATTCT+CGG | - | chr1.2:63650127-63650146 | MS.gene88522:CDS | 25.0% |
| !!! | TGATCTATAACACTACTTTT+AGG | + | chr1.2:63650488-63650507 | None:intergenic | 25.0% |
| AGATGAATTTCACAAAAGAG+TGG | - | chr1.2:63650425-63650444 | MS.gene88522:intron | 30.0% | |
| AGCCCATGATCTATTATAAA+TGG | - | chr1.2:63650205-63650224 | MS.gene88522:CDS | 30.0% | |
| ATATAGATGTGCATCATTCA+TGG | - | chr1.2:63649703-63649722 | MS.gene88522:intron | 30.0% | |
| CATCAGGTTATATTGGATTT+GGG | - | chr1.2:63649134-63649153 | MS.gene88522:CDS | 30.0% | |
| CATTCTTCATCAGGTTATAT+TGG | - | chr1.2:63649127-63649146 | MS.gene88522:CDS | 30.0% | |
| CCATTATCTAAGAAATTCTG+AGG | - | chr1.2:63649196-63649215 | MS.gene88522:CDS | 30.0% | |
| CCTCAGAATTTCTTAGATAA+TGG | + | chr1.2:63649199-63649218 | None:intergenic | 30.0% | |
| CTTATAATTTGGATTCTTCC+AGG | - | chr1.2:63650352-63650371 | MS.gene88522:intron | 30.0% | |
| GATCATAAACCATGTCAATA+TGG | + | chr1.2:63649642-63649661 | None:intergenic | 30.0% | |
| GTGATTATAGTAGATGAGAT+TGG | - | chr1.2:63650687-63650706 | MS.gene88522:intron | 30.0% | |
| GTTGATACCAGTAATGAAAT+TGG | - | chr1.2:63650549-63650568 | MS.gene88522:intron | 30.0% | |
| GTTTATGATCTGCTTCAATA+TGG | - | chr1.2:63649652-63649671 | MS.gene88522:intron | 30.0% | |
| TATAACCTGATGAAGAATGA+AGG | + | chr1.2:63649126-63649145 | None:intergenic | 30.0% | |
| TATGATAATCAAAACGAACC+AGG | + | chr1.2:63650827-63650846 | None:intergenic | 30.0% | |
| TCATCAGGTTATATTGGATT+TGG | - | chr1.2:63649133-63649152 | MS.gene88522:CDS | 30.0% | |
| TGAATTCTTTCAAATTGGGT+AGG | - | chr1.2:63650521-63650540 | MS.gene88522:intron | 30.0% | |
| ! | TTTTGTGTGTGTTAAAGACT+TGG | - | chr1.2:63649869-63649888 | MS.gene88522:intron | 30.0% |
| !! | AGAAATTCTGAGGTAAAAGT+AGG | - | chr1.2:63649206-63649225 | MS.gene88522:CDS | 30.0% |
| !! | AGAGCATTTTATTTCTTGGA+AGG | - | chr1.2:63649677-63649696 | MS.gene88522:intron | 30.0% |
| !!! | AAACGGACTTTTTTAAGATG+TGG | + | chr1.2:63649261-63649280 | None:intergenic | 30.0% |
| AATATTCCTCATGCAGCAAT+AGG | - | chr1.2:63650582-63650601 | MS.gene88522:CDS | 35.0% | |
| AGATTGTGATGCAAATCTGA+AGG | + | chr1.2:63648904-63648923 | None:intergenic | 35.0% | |
| AGTAATGAAATTGGAGGTGA+TGG | - | chr1.2:63650558-63650577 | MS.gene88522:intron | 35.0% | |
| AGTAGAAAATCATATGCCTG+AGG | - | chr1.2:63650665-63650684 | MS.gene88522:intron | 35.0% | |
| ATCACCTCCAATTTCATTAC+TGG | + | chr1.2:63650559-63650578 | None:intergenic | 35.0% | |
| CCGGATACTTGAAATGAAAT+CGG | - | chr1.2:63649767-63649786 | MS.gene88522:intron | 35.0% | |
| GAATATCAGCAATAAGGAGT+AGG | - | chr1.2:63649566-63649585 | MS.gene88522:intron | 35.0% | |
| GATACCAGTAATGAAATTGG+AGG | - | chr1.2:63650552-63650571 | MS.gene88522:intron | 35.0% | |
| GCTCTTCATAAACTCTAATC+CGG | + | chr1.2:63649232-63649251 | None:intergenic | 35.0% | |
| TCATCTACTATAATCACCTC+AGG | + | chr1.2:63650684-63650703 | None:intergenic | 35.0% | |
| TGCACAGAATATCAGCAATA+AGG | - | chr1.2:63649560-63649579 | MS.gene88522:intron | 35.0% | |
| TTGAACCTTCATTCTTCATC+AGG | - | chr1.2:63649118-63649137 | MS.gene88522:CDS | 35.0% | |
| TTGTGATATGATCTCATGTG+TGG | - | chr1.2:63649439-63649458 | MS.gene88522:intron | 35.0% | |
| ! | CATTCAATGATGTGTTGTTG+CGG | + | chr1.2:63649043-63649062 | None:intergenic | 35.0% |
| ! | CCGATTTCATTTCAAGTATC+CGG | + | chr1.2:63649770-63649789 | None:intergenic | 35.0% |
| ! | GATAATAGAGCTGGTATTGA+AGG | - | chr1.2:63649532-63649551 | MS.gene88522:intron | 35.0% |
| !!! | GGCAAGAGCATTTTATTTCT+TGG | - | chr1.2:63649673-63649692 | MS.gene88522:intron | 35.0% |
| ACAATTAACAGCGCCAAACA+TGG | + | chr1.2:63649901-63649920 | None:intergenic | 40.0% | |
| AGAGAGTTGGAATATGCTGA+AGG | - | chr1.2:63649487-63649506 | MS.gene88522:intron | 40.0% | |
| ATCACGCTATGTTGCATTGA+TGG | + | chr1.2:63650636-63650655 | None:intergenic | 40.0% | |
| CTAGGTAACAATGAGAGAGT+TGG | - | chr1.2:63649474-63649493 | MS.gene88522:intron | 40.0% | |
| TCAGCAATAAGGAGTAGGAA+TGG | - | chr1.2:63649571-63649590 | MS.gene88522:intron | 40.0% | |
| TGATATGATCTCATGTGTGG+AGG | - | chr1.2:63649442-63649461 | MS.gene88522:intron | 40.0% | |
| TTTGGGAAGGATAATAGAGC+TGG | - | chr1.2:63649523-63649542 | MS.gene88522:intron | 40.0% | |
| ! | AAGGAGCAGTTGGAGATTTT+GGG | - | chr1.2:63649506-63649525 | MS.gene88522:intron | 40.0% |
| ! | GTGTGTGTTAAAGACTTGGT+CGG | - | chr1.2:63649873-63649892 | MS.gene88522:intron | 40.0% |
| !! | ATTCTGAGGTAAAAGTAGGC+CGG | - | chr1.2:63649210-63649229 | MS.gene88522:CDS | 40.0% |
| AATTTGGATTCTTCCAGGCC+TGG | - | chr1.2:63650357-63650376 | MS.gene88522:intron | 45.0% | |
| AGTAGGAATGGTGGCATTGT+TGG | - | chr1.2:63649583-63649602 | MS.gene88522:intron | 45.0% | |
| ATGCTTATAGGGACTGCTCA+TGG | - | chr1.2:63650759-63650778 | MS.gene88522:intron | 45.0% | |
| ATTCCTCATGCAGCAATAGG+TGG | - | chr1.2:63650585-63650604 | MS.gene88522:CDS | 45.0% | |
| ATTTGGATTCTTCCAGGCCT+GGG | - | chr1.2:63650358-63650377 | MS.gene88522:intron | 45.0% | |
| GAATATGCTGAAGGAGCAGT+TGG | - | chr1.2:63649496-63649515 | MS.gene88522:intron | 45.0% | |
| GACCTACCTCCAAAAGTTGA+GGG | + | chr1.2:63648945-63648964 | None:intergenic | 45.0% | |
| GATACCACGCTTCAGGAAAA+CGG | + | chr1.2:63649160-63649179 | None:intergenic | 45.0% | |
| GCAACATAGCGTGATGATTG+AGG | - | chr1.2:63650641-63650660 | MS.gene88522:intron | 45.0% | |
| GCAATAAGGAGTAGGAATGG+TGG | - | chr1.2:63649574-63649593 | MS.gene88522:intron | 45.0% | |
| TGTCACTGGCCATATTGACA+TGG | - | chr1.2:63649630-63649649 | MS.gene88522:intron | 45.0% | |
| TTTCCTGAAGCGTGGTATCT+AGG | - | chr1.2:63649161-63649180 | MS.gene88522:CDS | 45.0% | |
| ! | AGCGAGGCATCATGCTTATA+GGG | - | chr1.2:63650748-63650767 | MS.gene88522:intron | 45.0% |
| ! | GAAGGAGCAGTTGGAGATTT+TGG | - | chr1.2:63649505-63649524 | MS.gene88522:intron | 45.0% |
| ! | GCTATGTTGCATTGATGGCT+CGG | + | chr1.2:63650631-63650650 | None:intergenic | 45.0% |
| ! | TTGGTTTGACGTGTCGGATT+GGG | - | chr1.2:63649602-63649621 | MS.gene88522:intron | 45.0% |
| !! | AGCAGTTGGAGATTTTGGGA+AGG | - | chr1.2:63649510-63649529 | MS.gene88522:intron | 45.0% |
| !! | GCATTGTTGGTTTGACGTGT+CGG | - | chr1.2:63649596-63649615 | MS.gene88522:intron | 45.0% |
| AAAGTTGAGGGCGGTTAGGT+TGG | + | chr1.2:63648933-63648952 | None:intergenic | 50.0% | |
| AAGCTGAAGCTCATGCATGC+CGG | - | chr1.2:63650715-63650734 | MS.gene88522:intron | 50.0% | |
| CTACCTCCAAAAGTTGAGGG+CGG | + | chr1.2:63648942-63648961 | None:intergenic | 50.0% | |
| GCGTGGTATCTAGGCAAACA+CGG | - | chr1.2:63649170-63649189 | MS.gene88522:CDS | 50.0% | |
| GGACCTACCTCCAAAAGTTG+AGG | + | chr1.2:63648946-63648965 | None:intergenic | 50.0% | |
| GTGTGGAGGAATGTGTAGCT+AGG | - | chr1.2:63649456-63649475 | MS.gene88522:intron | 50.0% | |
| TCCAAAAGTTGAGGGCGGTT+AGG | + | chr1.2:63648937-63648956 | None:intergenic | 50.0% | |
| TTGCCTAGATACCACGCTTC+AGG | + | chr1.2:63649167-63649186 | None:intergenic | 50.0% | |
| TTTGGATTCTTCCAGGCCTG+GGG | - | chr1.2:63650359-63650378 | MS.gene88522:intron | 50.0% | |
| ! | ACCTAACCGCCCTCAACTTT+TGG | - | chr1.2:63648933-63648952 | MS.gene88522:CDS | 50.0% |
| ! | GACTTGGTCGGTTCCATGTT+TGG | - | chr1.2:63649885-63649904 | MS.gene88522:intron | 50.0% |
| ! | GAGCGAGGCATCATGCTTAT+AGG | - | chr1.2:63650747-63650766 | MS.gene88522:intron | 50.0% |
| ! | TAACCGCCCTCAACTTTTGG+AGG | - | chr1.2:63648936-63648955 | MS.gene88522:CDS | 50.0% |
| ! | TTTGACGTGTCGGATTGGGA+GGG | - | chr1.2:63649606-63649625 | MS.gene88522:intron | 50.0% |
| !! | GTTGGTTTGACGTGTCGGAT+TGG | - | chr1.2:63649601-63649620 | MS.gene88522:intron | 50.0% |
| AGGTGGTGCACGTAGAATGC+AGG | - | chr1.2:63650602-63650621 | MS.gene88522:CDS | 55.0% | |
| GAATCCTACGCTCTCTGACC+TGG | - | chr1.2:63650806-63650825 | MS.gene88522:intron | 55.0% | |
| GCACCACCTATTGCTGCATG+AGG | + | chr1.2:63650591-63650610 | None:intergenic | 55.0% | |
| ! | ACAGTAGTCTTGCCAACCCC+AGG | + | chr1.2:63650378-63650397 | None:intergenic | 55.0% |
| ! | GTTTGACGTGTCGGATTGGG+AGG | - | chr1.2:63649605-63649624 | MS.gene88522:intron | 55.0% |
| !! | CGCCCTCAACTTTTGGAGGT+AGG | - | chr1.2:63648940-63648959 | MS.gene88522:CDS | 55.0% |
| GATTCTTCCAGGCCTGGGGT+TGG | - | chr1.2:63650363-63650382 | MS.gene88522:intron | 60.0% | |
| TGCCTCGCTCAGCAATCGAC+CGG | + | chr1.2:63650737-63650756 | None:intergenic | 60.0% | |
| ! | CGAACCAGGTCAGAGAGCGT+AGG | + | chr1.2:63650813-63650832 | None:intergenic | 60.0% |
| !! | TGGGCCGTTTTCCTGAAGCG+TGG | - | chr1.2:63649153-63649172 | MS.gene88522:CDS | 60.0% |
| AGTCTTGCCAACCCCAGGCC+TGG | + | chr1.2:63650373-63650392 | None:intergenic | 65.0% | |
| TGCCGGTCGATTGCTGAGCG+AGG | - | chr1.2:63650732-63650751 | MS.gene88522:intron | 65.0% | |
| ! | CGGATTGGGAGGGCTGTCAC+TGG | - | chr1.2:63649616-63649635 | MS.gene88522:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 63648895 | 63650896 | 63648895 | ID=MS.gene88522 |
| chr1.2 | mRNA | 63648895 | 63650896 | 63648895 | ID=MS.gene88522.t1;Parent=MS.gene88522 |
| chr1.2 | exon | 63650834 | 63650896 | 63650834 | ID=MS.gene88522.t1.exon1;Parent=MS.gene88522.t1 |
| chr1.2 | CDS | 63650834 | 63650896 | 63650834 | ID=cds.MS.gene88522.t1;Parent=MS.gene88522.t1 |
| chr1.2 | exon | 63650574 | 63650651 | 63650574 | ID=MS.gene88522.t1.exon2;Parent=MS.gene88522.t1 |
| chr1.2 | CDS | 63650574 | 63650651 | 63650574 | ID=cds.MS.gene88522.t1;Parent=MS.gene88522.t1 |
| chr1.2 | exon | 63650093 | 63650313 | 63650093 | ID=MS.gene88522.t1.exon3;Parent=MS.gene88522.t1 |
| chr1.2 | CDS | 63650093 | 63650313 | 63650093 | ID=cds.MS.gene88522.t1;Parent=MS.gene88522.t1 |
| chr1.2 | exon | 63649345 | 63649417 | 63649345 | ID=MS.gene88522.t1.exon4;Parent=MS.gene88522.t1 |
| chr1.2 | CDS | 63649345 | 63649417 | 63649345 | ID=cds.MS.gene88522.t1;Parent=MS.gene88522.t1 |
| chr1.2 | exon | 63648895 | 63649248 | 63648895 | ID=MS.gene88522.t1.exon5;Parent=MS.gene88522.t1 |
| chr1.2 | CDS | 63648895 | 63649248 | 63648895 | ID=cds.MS.gene88522.t1;Parent=MS.gene88522.t1 |
| Gene Sequence |
| Protein sequence |
