Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91361.t1 | XP_013469937.1 | 86.7 | 547 | 71 | 2 | 1 | 547 | 1 | 545 | 1.60E-125 | 459.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91361.t1 | G8A0T5 | 86.7 | 547 | 71 | 2 | 1 | 547 | 1 | 545 | 1.2e-125 | 459.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene91361 | 0.848004 | 8.08E-60 | -1.69E-46 |
| MS.gene049159 | MS.gene91361 | 0.817929 | 2.56E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene91361 | 0.808534 | 2.95E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene91361 | 0.805819 | 1.11E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene91361 | 0.855121 | 7.80E-62 | -1.69E-46 |
| MS.gene049850 | MS.gene91361 | 0.81324 | 2.83E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene91361 | 0.807931 | 3.97E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene91361 | 0.810898 | 9.17E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene91361 | 0.812228 | 4.71E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene91361 | 0.845887 | 3.07E-59 | -1.69E-46 |
| MS.gene050759 | MS.gene91361 | 0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene91361 | 0.800497 | 1.40E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene91361 | 0.832524 | 9.00E-56 | -1.69E-46 |
| MS.gene051247 | MS.gene91361 | 0.804373 | 2.23E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene91361 | 0.818719 | 1.69E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene91361 | 0.810857 | 9.36E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene91361 | 0.819338 | 1.22E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene91361 | 0.836863 | 7.29E-57 | -1.69E-46 |
| MS.gene052459 | MS.gene91361 | 0.820946 | 5.24E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene91361 | 0.821119 | 4.78E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene91361 | 0.870243 | 1.69E-66 | -1.69E-46 |
| MS.gene052519 | MS.gene91361 | 0.800815 | 1.21E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene91361 | 0.808307 | 3.30E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene91361 | 0.814477 | 1.51E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene91361 | 0.811144 | 8.11E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene91361 | 0.816163 | 6.37E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene91361 | 0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene91361 | 0.805877 | 1.08E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene91361 | 0.807192 | 5.70E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene91361 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene91361 | 0.806126 | 9.57E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene91361 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene91361 | 0.802986 | 4.32E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene91361 | 0.844839 | 5.90E-59 | -1.69E-46 |
| MS.gene055465 | MS.gene91361 | 0.840197 | 1.00E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene91361 | 0.846633 | 1.92E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene91361 | 0.828053 | 1.11E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene91361 | 0.818747 | 1.67E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene91361 | 0.822505 | 2.29E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene91361 | -0.817433 | 3.31E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene91361 | 0.817317 | 3.51E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene91361 | -0.803512 | 3.36E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene91361 | 0.830394 | 3.01E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene91361 | 0.838988 | 2.07E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene91361 | 0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene91361 | 0.82518 | 5.40E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene91361 | 0.814122 | 1.81E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene91361 | 0.810342 | 1.21E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene91361 | 0.805594 | 1.24E-49 | -1.69E-46 |
| MS.gene057294 | MS.gene91361 | 0.812619 | 3.87E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene91361 | 0.815394 | 9.45E-52 | -1.69E-46 |
| MS.gene057446 | MS.gene91361 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene91361 | 0.820404 | 6.98E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene91361 | 0.823633 | 1.25E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene91361 | 0.837763 | 4.29E-57 | -1.69E-46 |
| MS.gene058339 | MS.gene91361 | 0.800049 | 1.73E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene91361 | 0.822789 | 1.96E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene91361 | 0.817904 | 2.59E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene91361 | 0.827532 | 1.48E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene91361 | 0.817774 | 2.77E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene91361 | 0.812737 | 3.65E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene91361 | 0.830709 | 2.52E-55 | -1.69E-46 |
| MS.gene059965 | MS.gene91361 | 0.815852 | 7.48E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene91361 | 0.840667 | 7.57E-58 | -1.69E-46 |
| MS.gene060932 | MS.gene91361 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene91361 | 0.836485 | 9.10E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91361.t1 | MTR_1g105890 | 92.687 | 547 | 38 | 2 | 1 | 547 | 1 | 545 | 0.0 | 882 |
| MS.gene91361.t1 | MTR_5g005430 | 41.340 | 612 | 238 | 21 | 1 | 545 | 1 | 558 | 1.85e-86 | 278 |
| MS.gene91361.t1 | MTR_4g097790 | 46.053 | 76 | 31 | 4 | 1 | 74 | 1 | 68 | 2.34e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91361.t1 | AT4G33740 | 38.504 | 361 | 181 | 10 | 7 | 354 | 5 | 337 | 1.30e-32 | 130 |
| MS.gene91361.t1 | AT4G33740 | 38.504 | 361 | 181 | 10 | 7 | 354 | 5 | 337 | 1.30e-32 | 130 |
| MS.gene91361.t1 | AT4G33740 | 38.504 | 361 | 181 | 10 | 7 | 354 | 5 | 337 | 1.30e-32 | 130 |
| MS.gene91361.t1 | AT4G33740 | 38.504 | 361 | 181 | 10 | 7 | 354 | 5 | 337 | 1.30e-32 | 130 |
| MS.gene91361.t1 | AT4G33740 | 38.504 | 361 | 181 | 10 | 7 | 354 | 5 | 337 | 1.30e-32 | 130 |
| MS.gene91361.t1 | AT4G37820 | 50.000 | 92 | 40 | 5 | 1 | 91 | 1 | 87 | 5.01e-19 | 90.9 |
| MS.gene91361.t1 | AT4G37820 | 50.000 | 92 | 40 | 5 | 1 | 91 | 1 | 87 | 5.01e-19 | 90.9 |
Find 98 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAACGTGTCCAGTAATT+TGG | 0.180302 | 1.3:-72398698 | MS.gene91361:CDS |
| GTTTCTGTTAAACCTGAAAA+TGG | 0.226292 | 1.3:-72398802 | MS.gene91361:CDS |
| TGTTGCTTGGTGTCTGCTTC+TGG | 0.245511 | 1.3:-72399926 | MS.gene91361:CDS |
| TAGCACTGAAACAAGTAATT+TGG | 0.256562 | 1.3:-72399280 | MS.gene91361:CDS |
| CGCATTTCTATCCAAATTAC+TGG | 0.276741 | 1.3:+72398687 | None:intergenic |
| CTAAGTTAACCATGATAAAA+AGG | 0.287367 | 1.3:-72400013 | None:intergenic |
| TTGGCTATCGGGGTTTGTTT+TGG | 0.298402 | 1.3:+72399065 | None:intergenic |
| GGTAGAAAGGACCTTCTTCC+GGG | 0.327131 | 1.3:-72399801 | MS.gene91361:CDS |
| AACTGATCTTGTCACGTTGC+CGG | 0.327869 | 1.3:-72398428 | MS.gene91361:CDS |
| TCAAAACATACATGAGGATA+TGG | 0.336233 | 1.3:-72398461 | MS.gene91361:CDS |
| TGGTAGAAAGGACCTTCTTC+CGG | 0.348772 | 1.3:-72399802 | MS.gene91361:CDS |
| CTTAAATCCAATTGGCTATC+GGG | 0.355327 | 1.3:+72399054 | None:intergenic |
| ACAGTTAATACAACAATTAC+TGG | 0.363960 | 1.3:-72398904 | MS.gene91361:CDS |
| AGACAAGGAGGATGAGGAAA+AGG | 0.369456 | 1.3:-72399400 | MS.gene91361:CDS |
| ATCATTCTGATGAAAGTAAC+AGG | 0.386411 | 1.3:-72399200 | MS.gene91361:CDS |
| ACACGACACTATTGATTCTT+CGG | 0.386613 | 1.3:-72398488 | MS.gene91361:CDS |
| GACAAGGAGGATGAGGAAAA+GGG | 0.393398 | 1.3:-72399399 | MS.gene91361:CDS |
| TTTCCTTCATTTCTAATATC+CGG | 0.393946 | 1.3:+72398409 | None:intergenic |
| GATCTTTGATTCCTACTACT+TGG | 0.415150 | 1.3:+72399987 | None:intergenic |
| CTTCAAGCTATTCTGTTGCT+TGG | 0.419009 | 1.3:-72399939 | MS.gene91361:CDS |
| TCAAAATGATTCTGATTTGA+AGG | 0.420588 | 1.3:-72399175 | MS.gene91361:CDS |
| CTGCTTCTGGTTGATCTACC+AGG | 0.434517 | 1.3:-72399913 | MS.gene91361:CDS |
| GATTACTGCTTAAATCCAAT+TGG | 0.439581 | 1.3:+72399046 | None:intergenic |
| AAAGGACCTTCTTCCGGGTA+AGG | 0.449636 | 1.3:-72399796 | MS.gene91361:CDS |
| TAAGCACGGAGCCGAAGAGC+AGG | 0.458636 | 1.3:-72399586 | MS.gene91361:CDS |
| AGTAGGAATCAAAGATCTAA+AGG | 0.460334 | 1.3:-72399981 | MS.gene91361:CDS |
| ATTACCAGGTAGGTTTCCTT+CGG | 0.462002 | 1.3:+72398834 | None:intergenic |
| AGTGAAGAGGTGGAAGATGA+AGG | 0.462568 | 1.3:-72399546 | MS.gene91361:CDS |
| CAACAACAAGAAGGAGAAGA+AGG | 0.465449 | 1.3:-72399684 | MS.gene91361:CDS |
| GATGACACGTCAAGTTCATC+TGG | 0.468805 | 1.3:-72398976 | MS.gene91361:CDS |
| AACAAACCCCGATAGCCAAT+TGG | 0.479844 | 1.3:-72399061 | MS.gene91361:CDS |
| TCAAAGATCTAAAGGATTCA+AGG | 0.480436 | 1.3:-72399973 | MS.gene91361:CDS |
| ATTTCTTCAAATGCAACTGC+TGG | 0.480974 | 1.3:-72399126 | MS.gene91361:CDS |
| TGATCCGTCTCAGTTATAAT+CGG | 0.485326 | 1.3:+72399837 | None:intergenic |
| GCTTAAATCCAATTGGCTAT+CGG | 0.489720 | 1.3:+72399053 | None:intergenic |
| GATTCTGAAACTTGGTAGAA+AGG | 0.489839 | 1.3:-72399814 | MS.gene91361:CDS |
| GTGAAGACAACGTGCATGAA+GGG | 0.494786 | 1.3:-72399635 | MS.gene91361:CDS |
| ACAAGGAGGATGAGGAAAAG+GGG | 0.499091 | 1.3:-72399398 | MS.gene91361:CDS |
| AGAAGAGGGTGATGATGAGA+CGG | 0.505523 | 1.3:-72399430 | MS.gene91361:CDS |
| GCAACTGCTGGTAAAGAGGC+TGG | 0.509590 | 1.3:-72399114 | MS.gene91361:CDS |
| TGATCGTGATGATGAGGTTG+TGG | 0.514590 | 1.3:-72399472 | MS.gene91361:CDS |
| AAATGCGAGCTCTGATACCA+CGG | 0.515293 | 1.3:-72398671 | MS.gene91361:CDS |
| TTGCCGGATATTAGAAATGA+AGG | 0.515907 | 1.3:-72398412 | MS.gene91361:CDS |
| TTTAGATTTGTCACTTTCCG+TGG | 0.518761 | 1.3:+72398654 | None:intergenic |
| AGCAGTAACTCGACAGGCAC+TGG | 0.519435 | 1.3:-72399000 | MS.gene91361:CDS |
| ACCACGACAATCATGAAGCT+CGG | 0.520214 | 1.3:-72399362 | MS.gene91361:CDS |
| CCACGACAATCATGAAGCTC+GGG | 0.521569 | 1.3:-72399361 | MS.gene91361:CDS |
| AGAGAAAGACAAAGAAGAAG+AGG | 0.523414 | 1.3:-72399445 | MS.gene91361:CDS |
| TGTCATGATTGTGCTTAACC+TGG | 0.523771 | 1.3:+72399895 | None:intergenic |
| TGACAGTTTGTCTAATGAAA+CGG | 0.525886 | 1.3:-72399088 | MS.gene91361:CDS |
| CCCGAGCTTCATGATTGTCG+TGG | 0.527799 | 1.3:+72399361 | None:intergenic |
| TGAAAGCAAAAGTGAAGAGG+TGG | 0.527884 | 1.3:-72399556 | MS.gene91361:CDS |
| AAATGCAACTGCTGGTAAAG+AGG | 0.532472 | 1.3:-72399118 | MS.gene91361:CDS |
| TACCGAGGATGAGATGTTCA+AGG | 0.534057 | 1.3:-72398584 | MS.gene91361:CDS |
| CTTCAACCTTACCCGGAAGA+AGG | 0.542817 | 1.3:+72399790 | None:intergenic |
| GAGAAAGACAAAGAAGAAGA+GGG | 0.543819 | 1.3:-72399444 | MS.gene91361:CDS |
| TTATCTGCTTCAACCTTACC+CGG | 0.547125 | 1.3:+72399783 | None:intergenic |
| CAAGGAGGATGAGGAAAAGG+GGG | 0.549163 | 1.3:-72399397 | MS.gene91361:CDS |
| TGAAAAGCACGAGGAAGAAG+AGG | 0.550031 | 1.3:-72399757 | MS.gene91361:CDS |
| GCACAATCATGACAAGAAGA+AGG | 0.554608 | 1.3:-72399886 | MS.gene91361:CDS |
| GAAGAGGTGGAAGATGAAGG+AGG | 0.566940 | 1.3:-72399543 | MS.gene91361:CDS |
| ACGGATCAGATTCTGAAACT+TGG | 0.567290 | 1.3:-72399822 | MS.gene91361:CDS |
| GAATGAAGACAAGGAGGATG+AGG | 0.567800 | 1.3:-72399406 | MS.gene91361:CDS |
| GGAGATATAAAGCAAACAGA+TGG | 0.568088 | 1.3:-72398883 | MS.gene91361:CDS |
| ACGGAAAGTGACAAATCTAA+AGG | 0.571831 | 1.3:-72398652 | MS.gene91361:CDS |
| ACCCTTGAACATCTCATCCT+CGG | 0.573116 | 1.3:+72398582 | None:intergenic |
| CAATTGAATCATTACCAGGT+AGG | 0.578816 | 1.3:+72398824 | None:intergenic |
| TTAAATCCAATTGGCTATCG+GGG | 0.580558 | 1.3:+72399055 | None:intergenic |
| ATCATGTGCCACAGCACTAG+AGG | 0.584624 | 1.3:+72399314 | None:intergenic |
| GCACGGAGCCGAAGAGCAGG+AGG | 0.585830 | 1.3:-72399583 | MS.gene91361:CDS |
| GACGCAAGCAGTAACTCGAC+AGG | 0.588343 | 1.3:-72399006 | MS.gene91361:CDS |
| CACGATGAACAACAACAAGA+AGG | 0.590155 | 1.3:-72399693 | MS.gene91361:CDS |
| TCTGATTTGAAGGTTACAGA+AGG | 0.593375 | 1.3:-72399165 | MS.gene91361:CDS |
| AGCTCGGGAAGAACATTACA+AGG | 0.597038 | 1.3:-72399346 | MS.gene91361:CDS |
| AAATGAAAGCAAAAGTGAAG+AGG | 0.597712 | 1.3:-72399559 | MS.gene91361:CDS |
| AGTGAAGACAACGTGCATGA+AGG | 0.602024 | 1.3:-72399636 | MS.gene91361:CDS |
| ATTTCCGAAGGAAACCTACC+TGG | 0.602219 | 1.3:-72398838 | MS.gene91361:CDS |
| GAAACAATTGAATCATTACC+AGG | 0.603201 | 1.3:+72398820 | None:intergenic |
| ATCTAAAATTTCAGTGACAG+AGG | 0.616818 | 1.3:+72398519 | None:intergenic |
| TGTTAAACCTGAAAATGGAG+TGG | 0.618379 | 1.3:-72398797 | MS.gene91361:CDS |
| ACCGAGGATGAGATGTTCAA+GGG | 0.630659 | 1.3:-72398583 | MS.gene91361:CDS |
| GATGAAGAAGAAAATAAGCA+CGG | 0.630678 | 1.3:-72399600 | MS.gene91361:CDS |
| TGATGATGCCTCTAGTGCTG+TGG | 0.631001 | 1.3:-72399322 | MS.gene91361:CDS |
| CATACATGAGGATATGGCAA+AGG | 0.631044 | 1.3:-72398455 | MS.gene91361:CDS |
| ACAGAAGGTGAATTGACAGA+TGG | 0.633370 | 1.3:-72399150 | MS.gene91361:CDS |
| TCAGAATACTGACGCTACCG+AGG | 0.636306 | 1.3:-72398599 | MS.gene91361:CDS |
| AAGGAGGATGAGGAAAAGGG+GGG | 0.640271 | 1.3:-72399396 | MS.gene91361:CDS |
| ACTCAAACAAGTGAAACCGA+TGG | 0.642931 | 1.3:-72398556 | MS.gene91361:CDS |
| AGTGGCAGTAAAATTTCCGA+AGG | 0.656357 | 1.3:-72398850 | MS.gene91361:CDS |
| AGTGCATTAGAGAAGACGAT+CGG | 0.671772 | 1.3:-72398742 | MS.gene91361:CDS |
| AAATGATCATGAGAAATCAG+AGG | 0.674111 | 1.3:-72399502 | MS.gene91361:CDS |
| GGATACTCAAAACATACATG+AGG | 0.674707 | 1.3:-72398467 | MS.gene91361:CDS |
| AGATAATGATCGTGATGATG+AGG | 0.692551 | 1.3:-72399478 | MS.gene91361:CDS |
| ACTGCCGATTATAACTGAGA+CGG | 0.699045 | 1.3:-72399841 | MS.gene91361:CDS |
| TGAGACGGAGAATGAAGACA+AGG | 0.700440 | 1.3:-72399415 | MS.gene91361:CDS |
| ACAGATGGATTAGAGCAGAG+TGG | 0.713151 | 1.3:-72398868 | MS.gene91361:CDS |
| AGATAAGAATGAAAAGCACG+AGG | 0.713312 | 1.3:-72399766 | MS.gene91361:CDS |
| GACGGAGAATGAAGACAAGG+AGG | 0.719650 | 1.3:-72399412 | MS.gene91361:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACAGTTAATACAACAATTAC+TGG | - | chr1.3:72399479-72399498 | MS.gene91361:CDS | 25.0% |
| ! | TTTCCTTCATTTCTAATATC+CGG | + | chr1.3:72399977-72399996 | None:intergenic | 25.0% |
| !! | TCAAAATGATTCTGATTTGA+AGG | - | chr1.3:72399208-72399227 | MS.gene91361:CDS | 25.0% |
| AAATGAAAGCAAAAGTGAAG+AGG | - | chr1.3:72398824-72398843 | MS.gene91361:CDS | 30.0% | |
| AAATGATCATGAGAAATCAG+AGG | - | chr1.3:72398881-72398900 | MS.gene91361:CDS | 30.0% | |
| AGTAGGAATCAAAGATCTAA+AGG | - | chr1.3:72398402-72398421 | MS.gene91361:CDS | 30.0% | |
| ATCATTCTGATGAAAGTAAC+AGG | - | chr1.3:72399183-72399202 | MS.gene91361:CDS | 30.0% | |
| GAAACAATTGAATCATTACC+AGG | + | chr1.3:72399566-72399585 | None:intergenic | 30.0% | |
| GATGAAGAAGAAAATAAGCA+CGG | - | chr1.3:72398783-72398802 | MS.gene91361:CDS | 30.0% | |
| GATTACTGCTTAAATCCAAT+TGG | + | chr1.3:72399340-72399359 | None:intergenic | 30.0% | |
| GTTTCTGTTAAACCTGAAAA+TGG | - | chr1.3:72399581-72399600 | MS.gene91361:CDS | 30.0% | |
| TAAAAAGGAATCCAAGTAGT+AGG | - | chr1.3:72398385-72398404 | MS.gene91361:CDS | 30.0% | |
| TCAAAACATACATGAGGATA+TGG | - | chr1.3:72399922-72399941 | MS.gene91361:CDS | 30.0% | |
| TCAAAGATCTAAAGGATTCA+AGG | - | chr1.3:72398410-72398429 | MS.gene91361:CDS | 30.0% | |
| TGACAGTTTGTCTAATGAAA+CGG | - | chr1.3:72399295-72399314 | MS.gene91361:CDS | 30.0% | |
| ! | ATCTAAAATTTCAGTGACAG+AGG | + | chr1.3:72399867-72399886 | None:intergenic | 30.0% |
| ! | TAGCACTGAAACAAGTAATT+TGG | - | chr1.3:72399103-72399122 | MS.gene91361:CDS | 30.0% |
| ACGGAAAGTGACAAATCTAA+AGG | - | chr1.3:72399731-72399750 | MS.gene91361:CDS | 35.0% | |
| AGAGAAAGACAAAGAAGAAG+AGG | - | chr1.3:72398938-72398957 | MS.gene91361:CDS | 35.0% | |
| ATTTCTTCAAATGCAACTGC+TGG | - | chr1.3:72399257-72399276 | MS.gene91361:CDS | 35.0% | |
| CAATTGAATCATTACCAGGT+AGG | + | chr1.3:72399562-72399581 | None:intergenic | 35.0% | |
| CGCATTTCTATCCAAATTAC+TGG | + | chr1.3:72399699-72399718 | None:intergenic | 35.0% | |
| CTGAAAAATCTTCGACTCTT+GGG | - | chr1.3:72399615-72399634 | MS.gene91361:CDS | 35.0% | |
| CTTAAATCCAATTGGCTATC+GGG | + | chr1.3:72399332-72399351 | None:intergenic | 35.0% | |
| GAGAAAGACAAAGAAGAAGA+GGG | - | chr1.3:72398939-72398958 | MS.gene91361:CDS | 35.0% | |
| GATCTTTGATTCCTACTACT+TGG | + | chr1.3:72398399-72398418 | None:intergenic | 35.0% | |
| GCTTAAATCCAATTGGCTAT+CGG | + | chr1.3:72399333-72399352 | None:intergenic | 35.0% | |
| GGAGATATAAAGCAAACAGA+TGG | - | chr1.3:72399500-72399519 | MS.gene91361:CDS | 35.0% | |
| GGATACTCAAAACATACATG+AGG | - | chr1.3:72399916-72399935 | MS.gene91361:CDS | 35.0% | |
| TGAAAAATCTTCGACTCTTG+GGG | - | chr1.3:72399616-72399635 | MS.gene91361:CDS | 35.0% | |
| TGATCCGTCTCAGTTATAAT+CGG | + | chr1.3:72398549-72398568 | None:intergenic | 35.0% | |
| TGTTAAACCTGAAAATGGAG+TGG | - | chr1.3:72399586-72399605 | MS.gene91361:CDS | 35.0% | |
| TGTTAACGTGTCCAGTAATT+TGG | - | chr1.3:72399685-72399704 | MS.gene91361:CDS | 35.0% | |
| TTAAATCCAATTGGCTATCG+GGG | + | chr1.3:72399331-72399350 | None:intergenic | 35.0% | |
| TTGCCGGATATTAGAAATGA+AGG | - | chr1.3:72399971-72399990 | MS.gene91361:CDS | 35.0% | |
| ! | AGATAAGAATGAAAAGCACG+AGG | - | chr1.3:72398617-72398636 | MS.gene91361:CDS | 35.0% |
| ! | AGATAATGATCGTGATGATG+AGG | - | chr1.3:72398905-72398924 | MS.gene91361:CDS | 35.0% |
| ! | ATTTTGAGCATGATCAGACT+CGG | + | chr1.3:72399456-72399475 | None:intergenic | 35.0% |
| ! | TCTGATTTGAAGGTTACAGA+AGG | - | chr1.3:72399218-72399237 | MS.gene91361:CDS | 35.0% |
| !! | ACACGACACTATTGATTCTT+CGG | - | chr1.3:72399895-72399914 | MS.gene91361:CDS | 35.0% |
| !! | GATTCTGAAACTTGGTAGAA+AGG | - | chr1.3:72398569-72398588 | MS.gene91361:CDS | 35.0% |
| !! | TTTAGATTTGTCACTTTCCG+TGG | + | chr1.3:72399732-72399751 | None:intergenic | 35.0% |
| AAATGCAACTGCTGGTAAAG+AGG | - | chr1.3:72399265-72399284 | MS.gene91361:CDS | 40.0% | |
| ACAGAAGGTGAATTGACAGA+TGG | - | chr1.3:72399233-72399252 | MS.gene91361:CDS | 40.0% | |
| ACTCAAACAAGTGAAACCGA+TGG | - | chr1.3:72399827-72399846 | MS.gene91361:CDS | 40.0% | |
| AGTGCATTAGAGAAGACGAT+CGG | - | chr1.3:72399641-72399660 | MS.gene91361:CDS | 40.0% | |
| AGTGGCAGTAAAATTTCCGA+AGG | - | chr1.3:72399533-72399552 | MS.gene91361:CDS | 40.0% | |
| ATTACCAGGTAGGTTTCCTT+CGG | + | chr1.3:72399552-72399571 | None:intergenic | 40.0% | |
| CAACAACAAGAAGGAGAAGA+AGG | - | chr1.3:72398699-72398718 | MS.gene91361:CDS | 40.0% | |
| CACGATGAACAACAACAAGA+AGG | - | chr1.3:72398690-72398709 | MS.gene91361:CDS | 40.0% | |
| CATACATGAGGATATGGCAA+AGG | - | chr1.3:72399928-72399947 | MS.gene91361:CDS | 40.0% | |
| CCTGAAAAATCTTCGACTCT+TGG | - | chr1.3:72399614-72399633 | MS.gene91361:CDS | 40.0% | |
| CTTCAAGCTATTCTGTTGCT+TGG | - | chr1.3:72398444-72398463 | MS.gene91361:CDS | 40.0% | |
| GCACAATCATGACAAGAAGA+AGG | - | chr1.3:72398497-72398516 | MS.gene91361:CDS | 40.0% | |
| TGAAAGCAAAAGTGAAGAGG+TGG | - | chr1.3:72398827-72398846 | MS.gene91361:CDS | 40.0% | |
| TGTCATGATTGTGCTTAACC+TGG | + | chr1.3:72398491-72398510 | None:intergenic | 40.0% | |
| TTATCTGCTTCAACCTTACC+CGG | + | chr1.3:72398603-72398622 | None:intergenic | 40.0% | |
| ! | ACTGCCGATTATAACTGAGA+CGG | - | chr1.3:72398542-72398561 | MS.gene91361:CDS | 40.0% |
| ! | CCAAGAGTCGAAGATTTTTC+AGG | + | chr1.3:72399617-72399636 | None:intergenic | 40.0% |
| ! | GGATGTGTCTGATTTTCCAT+CGG | + | chr1.3:72399846-72399865 | None:intergenic | 40.0% |
| ! | TGATGAGTTGTCTCGTTTTC+AGG | + | chr1.3:72399167-72399186 | None:intergenic | 40.0% |
| ! | TTCATTTTCCTCCTGCTCTT+CGG | + | chr1.3:72398811-72398830 | None:intergenic | 40.0% |
| !! | ACGGATCAGATTCTGAAACT+TGG | - | chr1.3:72398561-72398580 | MS.gene91361:CDS | 40.0% |
| !!! | TGTCTCGTTTTCAGGTTTTC+TGG | + | chr1.3:72399159-72399178 | None:intergenic | 40.0% |
| AACAAACCCCGATAGCCAAT+TGG | - | chr1.3:72399322-72399341 | MS.gene91361:CDS | 45.0% | |
| AACTGATCTTGTCACGTTGC+CGG | - | chr1.3:72399955-72399974 | MS.gene91361:CDS | 45.0% | |
| ACAAGGAGGATGAGGAAAAG+GGG | - | chr1.3:72398985-72399004 | MS.gene91361:CDS | 45.0% | |
| ACCACGACAATCATGAAGCT+CGG | - | chr1.3:72399021-72399040 | MS.gene91361:CDS | 45.0% | |
| ACCCTTGAACATCTCATCCT+CGG | + | chr1.3:72399804-72399823 | None:intergenic | 45.0% | |
| ACCGAGGATGAGATGTTCAA+GGG | - | chr1.3:72399800-72399819 | MS.gene91361:CDS | 45.0% | |
| AGACAAGGAGGATGAGGAAA+AGG | - | chr1.3:72398983-72399002 | MS.gene91361:CDS | 45.0% | |
| AGCTCGGGAAGAACATTACA+AGG | - | chr1.3:72399037-72399056 | MS.gene91361:CDS | 45.0% | |
| AGTGAAGACAACGTGCATGA+AGG | - | chr1.3:72398747-72398766 | MS.gene91361:CDS | 45.0% | |
| AGTGAAGAGGTGGAAGATGA+AGG | - | chr1.3:72398837-72398856 | MS.gene91361:CDS | 45.0% | |
| ATTTCCGAAGGAAACCTACC+TGG | - | chr1.3:72399545-72399564 | MS.gene91361:CDS | 45.0% | |
| GAATGAAGACAAGGAGGATG+AGG | - | chr1.3:72398977-72398996 | MS.gene91361:CDS | 45.0% | |
| GACAAGGAGGATGAGGAAAA+GGG | - | chr1.3:72398984-72399003 | MS.gene91361:CDS | 45.0% | |
| GATGACACGTCAAGTTCATC+TGG | - | chr1.3:72399407-72399426 | MS.gene91361:CDS | 45.0% | |
| GTGAAGACAACGTGCATGAA+GGG | - | chr1.3:72398748-72398767 | MS.gene91361:CDS | 45.0% | |
| TACCGAGGATGAGATGTTCA+AGG | - | chr1.3:72399799-72399818 | MS.gene91361:CDS | 45.0% | |
| TGAGACGGAGAATGAAGACA+AGG | - | chr1.3:72398968-72398987 | MS.gene91361:CDS | 45.0% | |
| TGGTAGAAAGGACCTTCTTC+CGG | - | chr1.3:72398581-72398600 | MS.gene91361:CDS | 45.0% | |
| ! | AAATGCGAGCTCTGATACCA+CGG | - | chr1.3:72399712-72399731 | MS.gene91361:CDS | 45.0% |
| ! | AGAAGAGGGTGATGATGAGA+CGG | - | chr1.3:72398953-72398972 | MS.gene91361:CDS | 45.0% |
| ! | TGAAAAGCACGAGGAAGAAG+AGG | - | chr1.3:72398626-72398645 | MS.gene91361:CDS | 45.0% |
| ! | TGATCGTGATGATGAGGTTG+TGG | - | chr1.3:72398911-72398930 | MS.gene91361:CDS | 45.0% |
| !! | ACAGATGGATTAGAGCAGAG+TGG | - | chr1.3:72399515-72399534 | MS.gene91361:CDS | 45.0% |
| !! | TTGGCTATCGGGGTTTGTTT+TGG | + | chr1.3:72399321-72399340 | None:intergenic | 45.0% |
| AAAGGACCTTCTTCCGGGTA+AGG | - | chr1.3:72398587-72398606 | MS.gene91361:CDS | 50.0% | |
| AAGGAGGATGAGGAAAAGGG+GGG | - | chr1.3:72398987-72399006 | MS.gene91361:CDS | 50.0% | |
| ATCATGTGCCACAGCACTAG+AGG | + | chr1.3:72399072-72399091 | None:intergenic | 50.0% | |
| CAAGGAGGATGAGGAAAAGG+GGG | - | chr1.3:72398986-72399005 | MS.gene91361:CDS | 50.0% | |
| CCACGACAATCATGAAGCTC+GGG | - | chr1.3:72399022-72399041 | MS.gene91361:CDS | 50.0% | |
| CTTCAACCTTACCCGGAAGA+AGG | + | chr1.3:72398596-72398615 | None:intergenic | 50.0% | |
| GAAGAGGTGGAAGATGAAGG+AGG | - | chr1.3:72398840-72398859 | MS.gene91361:CDS | 50.0% | |
| GACGGAGAATGAAGACAAGG+AGG | - | chr1.3:72398971-72398990 | MS.gene91361:CDS | 50.0% | |
| GGTAGAAAGGACCTTCTTCC+GGG | - | chr1.3:72398582-72398601 | MS.gene91361:CDS | 50.0% | |
| TCAGAATACTGACGCTACCG+AGG | - | chr1.3:72399784-72399803 | MS.gene91361:CDS | 50.0% | |
| ! | CTGCTTCTGGTTGATCTACC+AGG | - | chr1.3:72398470-72398489 | MS.gene91361:CDS | 50.0% |
| ! | TGATGATGCCTCTAGTGCTG+TGG | - | chr1.3:72399061-72399080 | MS.gene91361:CDS | 50.0% |
| !! | TGTTGCTTGGTGTCTGCTTC+TGG | - | chr1.3:72398457-72398476 | MS.gene91361:CDS | 50.0% |
| AGCAGTAACTCGACAGGCAC+TGG | - | chr1.3:72399383-72399402 | MS.gene91361:CDS | 55.0% | |
| CCCGAGCTTCATGATTGTCG+TGG | + | chr1.3:72399025-72399044 | None:intergenic | 55.0% | |
| GACGCAAGCAGTAACTCGAC+AGG | - | chr1.3:72399377-72399396 | MS.gene91361:CDS | 55.0% | |
| GCAACTGCTGGTAAAGAGGC+TGG | - | chr1.3:72399269-72399288 | MS.gene91361:CDS | 55.0% | |
| ! | GGAGCTGCCACTCCATTTTC+AGG | + | chr1.3:72399596-72399615 | None:intergenic | 55.0% |
| TAAGCACGGAGCCGAAGAGC+AGG | - | chr1.3:72398797-72398816 | MS.gene91361:CDS | 60.0% | |
| GCACGGAGCCGAAGAGCAGG+AGG | - | chr1.3:72398800-72398819 | MS.gene91361:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 72398381 | 72400024 | 72398381 | ID=MS.gene91361 |
| chr1.3 | mRNA | 72398381 | 72400024 | 72398381 | ID=MS.gene91361.t1;Parent=MS.gene91361 |
| chr1.3 | exon | 72398381 | 72400024 | 72398381 | ID=MS.gene91361.t1.exon1;Parent=MS.gene91361.t1 |
| chr1.3 | CDS | 72398381 | 72400024 | 72398381 | ID=cds.MS.gene91361.t1;Parent=MS.gene91361.t1 |
| Gene Sequence |
| Protein sequence |
