Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94304.t1 | XP_004516700.1 | 90.2 | 399 | 36 | 1 | 1 | 396 | 132 | 530 | 1.80E-206 | 728.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94304.t1 | A0A1S2Z812 | 90.2 | 399 | 36 | 1 | 1 | 396 | 132 | 530 | 1.3e-206 | 728.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene94304 | 0.826947 | 2.05E-54 | -1.69E-46 |
MS.gene049151 | MS.gene94304 | 0.801475 | 8.85E-49 | -1.69E-46 |
MS.gene049153 | MS.gene94304 | 0.830443 | 2.93E-55 | -1.69E-46 |
MS.gene049297 | MS.gene94304 | 0.808196 | 3.49E-50 | -1.69E-46 |
MS.gene049389 | MS.gene94304 | 0.80198 | 6.97E-49 | -1.69E-46 |
MS.gene049758 | MS.gene94304 | 0.82625 | 3.01E-54 | -1.69E-46 |
MS.gene050128 | MS.gene94304 | 0.801947 | 7.08E-49 | -1.69E-46 |
MS.gene050226 | MS.gene94304 | 0.821057 | 4.94E-53 | -1.69E-46 |
MS.gene050227 | MS.gene94304 | 0.815616 | 8.44E-52 | -1.69E-46 |
MS.gene050228 | MS.gene94304 | 0.806051 | 9.92E-50 | -1.69E-46 |
MS.gene050301 | MS.gene94304 | 0.87959 | 1.10E-69 | -1.69E-46 |
MS.gene050558 | MS.gene94304 | 0.810981 | 8.80E-51 | -1.69E-46 |
MS.gene050642 | MS.gene94304 | 0.825524 | 4.47E-54 | -1.69E-46 |
MS.gene050812 | MS.gene94304 | 0.817562 | 3.09E-52 | -1.69E-46 |
MS.gene051582 | MS.gene94304 | 0.800046 | 1.73E-48 | -1.69E-46 |
MS.gene051663 | MS.gene94304 | 0.812614 | 3.88E-51 | -1.69E-46 |
MS.gene051860 | MS.gene94304 | 0.820843 | 5.54E-53 | -1.69E-46 |
MS.gene051983 | MS.gene94304 | 0.846957 | 1.57E-59 | -1.69E-46 |
MS.gene052188 | MS.gene94304 | 0.877928 | 4.24E-69 | -1.69E-46 |
MS.gene052253 | MS.gene94304 | 0.826071 | 3.32E-54 | -1.69E-46 |
MS.gene052340 | MS.gene94304 | 0.843021 | 1.81E-58 | -1.69E-46 |
MS.gene053557 | MS.gene94304 | 0.814158 | 1.78E-51 | -1.69E-46 |
MS.gene053559 | MS.gene94304 | 0.825685 | 4.10E-54 | -1.69E-46 |
MS.gene053577 | MS.gene94304 | 0.840683 | 7.50E-58 | -1.69E-46 |
MS.gene053836 | MS.gene94304 | 0.862386 | 5.26E-64 | -1.69E-46 |
MS.gene053907 | MS.gene94304 | 0.800654 | 1.30E-48 | -1.69E-46 |
MS.gene053928 | MS.gene94304 | 0.806091 | 9.74E-50 | -1.69E-46 |
MS.gene054123 | MS.gene94304 | 0.844284 | 8.32E-59 | -1.69E-46 |
MS.gene054930 | MS.gene94304 | 0.854041 | 1.60E-61 | -1.69E-46 |
MS.gene054942 | MS.gene94304 | 0.811026 | 8.60E-51 | -1.69E-46 |
MS.gene054983 | MS.gene94304 | 0.800758 | 1.24E-48 | -1.69E-46 |
MS.gene055390 | MS.gene94304 | 0.811781 | 5.90E-51 | -1.69E-46 |
MS.gene055422 | MS.gene94304 | 0.826117 | 3.23E-54 | -1.69E-46 |
MS.gene055428 | MS.gene94304 | 0.809334 | 1.99E-50 | -1.69E-46 |
MS.gene05553 | MS.gene94304 | 0.838156 | 3.40E-57 | -1.69E-46 |
MS.gene055604 | MS.gene94304 | 0.816572 | 5.16E-52 | -1.69E-46 |
MS.gene056407 | MS.gene94304 | 0.80657 | 7.71E-50 | -1.69E-46 |
MS.gene05647 | MS.gene94304 | 0.811946 | 5.43E-51 | -1.69E-46 |
MS.gene056612 | MS.gene94304 | 0.831933 | 1.26E-55 | -1.69E-46 |
MS.gene056659 | MS.gene94304 | 0.859151 | 5.04E-63 | -1.69E-46 |
MS.gene056723 | MS.gene94304 | 0.81094 | 8.98E-51 | -1.69E-46 |
MS.gene056979 | MS.gene94304 | 0.851591 | 8.03E-61 | -1.69E-46 |
MS.gene05702 | MS.gene94304 | 0.802052 | 6.73E-49 | -1.69E-46 |
MS.gene057121 | MS.gene94304 | 0.851824 | 6.90E-61 | -1.69E-46 |
MS.gene057396 | MS.gene94304 | 0.817922 | 2.56E-52 | -1.69E-46 |
MS.gene057448 | MS.gene94304 | 0.803591 | 3.24E-49 | -1.69E-46 |
MS.gene057450 | MS.gene94304 | 0.806681 | 7.31E-50 | -1.69E-46 |
MS.gene057469 | MS.gene94304 | 0.810142 | 1.34E-50 | -1.69E-46 |
MS.gene058002 | MS.gene94304 | 0.868225 | 7.65E-66 | -1.69E-46 |
MS.gene058082 | MS.gene94304 | 0.821057 | 4.94E-53 | -1.69E-46 |
MS.gene05811 | MS.gene94304 | 0.854166 | 1.47E-61 | -1.69E-46 |
MS.gene058142 | MS.gene94304 | 0.902193 | 1.25E-78 | -1.69E-46 |
MS.gene058276 | MS.gene94304 | 0.834805 | 2.42E-56 | -1.69E-46 |
MS.gene058365 | MS.gene94304 | 0.825442 | 4.68E-54 | -1.69E-46 |
MS.gene058749 | MS.gene94304 | 0.819872 | 9.24E-53 | -1.69E-46 |
MS.gene058833 | MS.gene94304 | 0.845185 | 4.75E-59 | -1.69E-46 |
MS.gene058845 | MS.gene94304 | 0.81706 | 4.01E-52 | -1.69E-46 |
MS.gene05886 | MS.gene94304 | 0.818366 | 2.04E-52 | -1.69E-46 |
MS.gene058949 | MS.gene94304 | 0.841594 | 4.32E-58 | -1.69E-46 |
MS.gene05907 | MS.gene94304 | 0.848086 | 7.67E-60 | -1.69E-46 |
MS.gene059285 | MS.gene94304 | 0.814521 | 1.48E-51 | -1.69E-46 |
MS.gene059342 | MS.gene94304 | 0.800943 | 1.14E-48 | -1.69E-46 |
MS.gene059518 | MS.gene94304 | 0.812972 | 3.24E-51 | -1.69E-46 |
MS.gene059597 | MS.gene94304 | 0.838809 | 2.31E-57 | -1.69E-46 |
MS.gene05959 | MS.gene94304 | 0.817919 | 2.57E-52 | -1.69E-46 |
MS.gene059676 | MS.gene94304 | 0.808681 | 2.75E-50 | -1.69E-46 |
MS.gene059688 | MS.gene94304 | 0.810946 | 8.95E-51 | -1.69E-46 |
MS.gene059692 | MS.gene94304 | 0.810447 | 1.15E-50 | -1.69E-46 |
MS.gene059695 | MS.gene94304 | 0.813326 | 2.71E-51 | -1.69E-46 |
MS.gene05984 | MS.gene94304 | 0.858406 | 8.42E-63 | -1.69E-46 |
MS.gene059894 | MS.gene94304 | 0.835467 | 1.65E-56 | -1.69E-46 |
MS.gene059899 | MS.gene94304 | 0.848117 | 7.52E-60 | -1.69E-46 |
MS.gene060407 | MS.gene94304 | 0.854382 | 1.28E-61 | -1.69E-46 |
MS.gene061049 | MS.gene94304 | 0.821939 | 3.09E-53 | -1.69E-46 |
MS.gene061159 | MS.gene94304 | 0.808054 | 3.74E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94304.t1 | MTR_6g053110 | 93.182 | 396 | 2 | 2 | 1 | 396 | 137 | 507 | 0.0 | 747 |
MS.gene94304.t1 | MTR_6g053110 | 97.034 | 236 | 7 | 0 | 1 | 236 | 137 | 372 | 4.11e-170 | 480 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94304.t1 | AT5G62650 | 64.764 | 403 | 131 | 6 | 1 | 396 | 130 | 528 | 0.0 | 518 |
Find 86 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGCATCATCTTCCAATTT+AGG | 0.100505 | 6.2:-42992943 | None:intergenic |
ACCAAAAGGGAGTCTTAATT+TGG | 0.190178 | 6.2:-42993037 | None:intergenic |
GAGGAAATTGGAGATAGTTT+AGG | 0.227554 | 6.2:+42987512 | MS.gene94304:CDS |
TCAAACTAGCTTTGCTCATT+TGG | 0.235071 | 6.2:-42993200 | None:intergenic |
AGGAAATTGGAGATAGTTTA+GGG | 0.236987 | 6.2:+42987513 | MS.gene94304:CDS |
ACAATCCCACACAGTGGTTT+TGG | 0.240085 | 6.2:+42986625 | MS.gene94304:CDS |
ATCAAGCAGCTGCCCTAAAT+TGG | 0.252779 | 6.2:+42992930 | MS.gene94304:CDS |
ACAACCGAAATTTCCATATA+TGG | 0.268063 | 6.2:+42991183 | MS.gene94304:CDS |
TCAAATGAGTCAACCATATA+TGG | 0.275386 | 6.2:-42991196 | None:intergenic |
GCTTCTCGTTGGGAACAAAT+TGG | 0.281103 | 6.2:-42986492 | None:intergenic |
GCAGAAGTGGTTGAGGAAAT+TGG | 0.285165 | 6.2:+42987500 | MS.gene94304:CDS |
TAGCATCATCTTCCAATTTA+GGG | 0.287330 | 6.2:-42992942 | None:intergenic |
TAATTTGGAATGATCGTCTT+TGG | 0.306511 | 6.2:-42993022 | None:intergenic |
AGGGCCATTCCTCTCACTTT+TGG | 0.310613 | 6.2:-42985186 | None:intergenic |
TCAACCATATATGGAAATTT+CGG | 0.312417 | 6.2:-42991187 | None:intergenic |
GCCGCTGAATGTGCCGAGTT+TGG | 0.318648 | 6.2:-42987448 | None:intergenic |
ACAAAGTACTCTTGGGTAAT+AGG | 0.319800 | 6.2:+42991137 | MS.gene94304:CDS |
CAACTACAGATGGTATTAAA+TGG | 0.331552 | 6.2:+42986704 | MS.gene94304:CDS |
TCAAGAGGTGCTTGATGAAA+TGG | 0.359395 | 6.2:+42991048 | MS.gene94304:CDS |
TGTCAACAGTATAATGAAAC+TGG | 0.388539 | 6.2:-42991117 | None:intergenic |
TACTGTTGACAAAGTACTCT+TGG | 0.392001 | 6.2:+42991129 | MS.gene94304:CDS |
CCCACATTAGCTACGAATAG+TGG | 0.399716 | 6.2:-42993321 | None:intergenic |
AATTATACCTGCTTCTCGTT+GGG | 0.400296 | 6.2:-42986502 | None:intergenic |
TCCAAATTAAGACTCCCTTT+TGG | 0.403564 | 6.2:+42993036 | MS.gene94304:CDS |
TTTAGCTTATGAACATTTCA+AGG | 0.411237 | 6.2:+42986257 | MS.gene94304:CDS |
CCTCAACCACTTCTGCTGCC+AGG | 0.415344 | 6.2:-42987493 | None:intergenic |
TTCAGAAGAGTCTGTACAAC+CGG | 0.430452 | 6.2:-42992971 | None:intergenic |
CGTTGGGAACAAATTGGAAC+AGG | 0.435543 | 6.2:-42986486 | None:intergenic |
GAAGATGATGCTAAAGAAAC+CGG | 0.458835 | 6.2:+42992952 | MS.gene94304:CDS |
GGATGATTTGACAAAAGAGT+TGG | 0.465210 | 6.2:+42993233 | MS.gene94304:CDS |
TTTATTGATCTAGGAGATGC+AGG | 0.471377 | 6.2:+42985221 | MS.gene94304:CDS |
TGAGTACAAATTAGAAGATC+GGG | 0.471795 | 6.2:+42993296 | MS.gene94304:CDS |
TGGTTGACTCATTTGAAAGA+AGG | 0.477306 | 6.2:+42991203 | MS.gene94304:CDS |
CAGGCACCCACCACGCCACT+TGG | 0.483053 | 6.2:-42986225 | None:intergenic |
ACTGTTGACAAAGTACTCTT+GGG | 0.486851 | 6.2:+42991130 | MS.gene94304:CDS |
TCATGAAACCAATCACCAAA+AGG | 0.488144 | 6.2:-42993051 | None:intergenic |
CAAGAGGTGCTTGATGAAAT+GGG | 0.490240 | 6.2:+42991049 | MS.gene94304:CDS |
AAATTATACCTGCTTCTCGT+TGG | 0.491815 | 6.2:-42986503 | None:intergenic |
AAAGCAGGTTTATCAAGAAA+AGG | 0.495281 | 6.2:+42993099 | MS.gene94304:CDS |
ATGAGTACAAATTAGAAGAT+CGG | 0.495909 | 6.2:+42993295 | MS.gene94304:CDS |
GCCGAGTTTGGATTAATGTA+TGG | 0.498377 | 6.2:-42987436 | None:intergenic |
GGAAGTCCTCGTTGGATTCG+AGG | 0.502433 | 6.2:+42993372 | MS.gene94304:CDS |
TGTGTTTAGTGCTCACAACT+TGG | 0.502465 | 6.2:+42986669 | MS.gene94304:CDS |
TATTCTAGTGTTGGAAGGAC+GGG | 0.503511 | 6.2:+42993351 | MS.gene94304:CDS |
ATTTGTTCCCAACGAGAAGC+AGG | 0.503660 | 6.2:+42986495 | MS.gene94304:CDS |
AGGTGGTTGCGGAAAGCGAC+AGG | 0.506989 | 6.2:+42991157 | MS.gene94304:CDS |
GCAGACAATGCGACTGTTGG+TGG | 0.509487 | 6.2:+42993267 | MS.gene94304:CDS |
CCCACTATTCGTAGCTAATG+TGG | 0.523741 | 6.2:+42993320 | MS.gene94304:CDS |
CATTCAGCGGCGGCGAGATG+TGG | 0.531124 | 6.2:+42987460 | MS.gene94304:CDS |
AGACTCTTCTGAATATAACT+TGG | 0.532819 | 6.2:+42992981 | MS.gene94304:CDS |
GGTGATTATTATTCTAGTGT+TGG | 0.533354 | 6.2:+42993342 | MS.gene94304:CDS |
ATTATTATTCTAGTGTTGGA+AGG | 0.534001 | 6.2:+42993346 | MS.gene94304:CDS |
CCTGGCAGCAGAAGTGGTTG+AGG | 0.541617 | 6.2:+42987493 | MS.gene94304:CDS |
TTATTCTAGTGTTGGAAGGA+CGG | 0.554799 | 6.2:+42993350 | MS.gene94304:CDS |
TCCAAACTCGGCACATTCAG+CGG | 0.565831 | 6.2:+42987447 | MS.gene94304:CDS |
CATGAAACCAATCACCAAAA+GGG | 0.565941 | 6.2:-42993050 | None:intergenic |
ATTGCAATTGCAACTACAGA+TGG | 0.572603 | 6.2:+42986694 | MS.gene94304:CDS |
ATAACACTCAGTGGTATACT+CGG | 0.582069 | 6.2:-42991076 | None:intergenic |
TCCATACATTAATCCAAACT+CGG | 0.582429 | 6.2:+42987435 | MS.gene94304:CDS |
GAAGGACGGGAAGTCCTCGT+TGG | 0.593326 | 6.2:+42993364 | MS.gene94304:CDS |
GGTCTCTCTACTGAAGAAGC+AGG | 0.594013 | 6.2:+42993177 | MS.gene94304:CDS |
ATAAGCTAAATCGAGACGGC+AGG | 0.596438 | 6.2:-42986244 | None:intergenic |
TAAACTAGTCATACCTCTGG+AGG | 0.603392 | 6.2:-42987539 | None:intergenic |
CACTCAGTGGTATACTCGGA+TGG | 0.604299 | 6.2:-42991072 | None:intergenic |
CCACTATTCGTAGCTAATGT+GGG | 0.605324 | 6.2:+42993321 | MS.gene94304:CDS |
TGACAACCTGGCAGCAGAAG+TGG | 0.610480 | 6.2:+42987487 | MS.gene94304:CDS |
TCTTGGGTAATAGGTGGTTG+CGG | 0.610993 | 6.2:+42991146 | MS.gene94304:CDS |
GGAAATTGGAGATAGTTTAG+GGG | 0.611002 | 6.2:+42987514 | MS.gene94304:CDS |
GAAGCAGACAATGCGACTGT+TGG | 0.611347 | 6.2:+42993264 | MS.gene94304:CDS |
CCACATTAGCTACGAATAGT+GGG | 0.612532 | 6.2:-42993320 | None:intergenic |
TAGTTTAGGGGAGCCTCCAG+AGG | 0.617502 | 6.2:+42987526 | MS.gene94304:CDS |
AATATTCCAAGTGGCGTGGT+GGG | 0.618019 | 6.2:+42986219 | MS.gene94304:CDS |
GGAACAAATTGGAACAGGTG+AGG | 0.626637 | 6.2:-42986481 | None:intergenic |
CAGCAATCACCAAAAGTGAG+AGG | 0.633326 | 6.2:+42985177 | MS.gene94304:CDS |
ATCACCAAAAGTGAGAGGAA+TGG | 0.635439 | 6.2:+42985182 | MS.gene94304:CDS |
GTTCATAAGCTAAATCGAGA+CGG | 0.645085 | 6.2:-42986248 | None:intergenic |
GAATATTCCAAGTGGCGTGG+TGG | 0.648473 | 6.2:+42986218 | MS.gene94304:CDS |
AGATGTGGTTGATGACAACC+TGG | 0.653007 | 6.2:+42987475 | MS.gene94304:CDS |
ACTGAATATTCCAAGTGGCG+TGG | 0.659184 | 6.2:+42986215 | MS.gene94304:CDS |
AAGTACTCTTGGGTAATAGG+TGG | 0.663674 | 6.2:+42991140 | MS.gene94304:CDS |
AAACTCGGCACATTCAGCGG+CGG | 0.687036 | 6.2:+42987450 | MS.gene94304:CDS |
GCTTTAGAAATAACACTCAG+TGG | 0.691894 | 6.2:-42991085 | None:intergenic |
AAGTTGTGAGCACTAAACAC+AGG | 0.711561 | 6.2:-42986667 | None:intergenic |
AGTCCTCGTTGGATTCGAGG+AGG | 0.715571 | 6.2:+42993375 | MS.gene94304:CDS |
GATCCTCCTCGAATCCAACG+AGG | 0.730797 | 6.2:-42993378 | None:intergenic |
CTGAAGACAATCCCACACAG+TGG | 0.749428 | 6.2:+42986619 | MS.gene94304:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 42985170 | 42993407 | 42985170 | ID=MS.gene94304 |
chr6.2 | mRNA | 42985170 | 42993407 | 42985170 | ID=MS.gene94304.t1;Parent=MS.gene94304 |
chr6.2 | exon | 42985170 | 42985242 | 42985170 | ID=MS.gene94304.t1.exon1;Parent=MS.gene94304.t1 |
chr6.2 | CDS | 42985170 | 42985242 | 42985170 | ID=cds.MS.gene94304.t1;Parent=MS.gene94304.t1 |
chr6.2 | exon | 42986199 | 42986278 | 42986199 | ID=MS.gene94304.t1.exon2;Parent=MS.gene94304.t1 |
chr6.2 | CDS | 42986199 | 42986278 | 42986199 | ID=cds.MS.gene94304.t1;Parent=MS.gene94304.t1 |
chr6.2 | exon | 42986475 | 42986516 | 42986475 | ID=MS.gene94304.t1.exon3;Parent=MS.gene94304.t1 |
chr6.2 | CDS | 42986475 | 42986516 | 42986475 | ID=cds.MS.gene94304.t1;Parent=MS.gene94304.t1 |
chr6.2 | exon | 42986598 | 42986725 | 42986598 | ID=MS.gene94304.t1.exon4;Parent=MS.gene94304.t1 |
chr6.2 | CDS | 42986598 | 42986725 | 42986598 | ID=cds.MS.gene94304.t1;Parent=MS.gene94304.t1 |
chr6.2 | exon | 42987367 | 42987547 | 42987367 | ID=MS.gene94304.t1.exon5;Parent=MS.gene94304.t1 |
chr6.2 | CDS | 42987367 | 42987547 | 42987367 | ID=cds.MS.gene94304.t1;Parent=MS.gene94304.t1 |
chr6.2 | exon | 42991046 | 42991224 | 42991046 | ID=MS.gene94304.t1.exon6;Parent=MS.gene94304.t1 |
chr6.2 | CDS | 42991046 | 42991224 | 42991046 | ID=cds.MS.gene94304.t1;Parent=MS.gene94304.t1 |
chr6.2 | exon | 42992900 | 42993407 | 42992900 | ID=MS.gene94304.t1.exon7;Parent=MS.gene94304.t1 |
chr6.2 | CDS | 42992900 | 42993407 | 42992900 | ID=cds.MS.gene94304.t1;Parent=MS.gene94304.t1 |
Gene Sequence |
Protein sequence |