Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97477.t1 | XP_013448631.1 | 100 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 4.80E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97477.t1 | Q9ZTN2 | 90.2 | 153 | 15 | 0 | 1 | 153 | 63 | 215 | 6.1e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97477.t1 | I3SA95 | 100.0 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 3.4e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene97477 | -0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene97477 | -0.805937 | 1.05E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene97477 | -0.816811 | 4.56E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene97477 | -0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene97477 | -0.828188 | 1.03E-54 | -1.69E-46 |
| MS.gene050237 | MS.gene97477 | -0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene97477 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene97477 | -0.821415 | 4.09E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene97477 | 0.825671 | 4.13E-54 | -1.69E-46 |
| MS.gene050680 | MS.gene97477 | -0.832483 | 9.22E-56 | -1.69E-46 |
| MS.gene050750 | MS.gene97477 | -0.840036 | 1.11E-57 | -1.69E-46 |
| MS.gene050905 | MS.gene97477 | 0.809949 | 1.47E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene97477 | -0.845394 | 4.17E-59 | -1.69E-46 |
| MS.gene051924 | MS.gene97477 | 0.820506 | 6.62E-53 | -1.69E-46 |
| MS.gene051926 | MS.gene97477 | 0.83249 | 9.18E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene97477 | -0.809385 | 1.94E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene97477 | -0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene052309 | MS.gene97477 | 0.854652 | 1.07E-61 | -1.69E-46 |
| MS.gene052358 | MS.gene97477 | 0.800944 | 1.14E-48 | -1.69E-46 |
| MS.gene052426 | MS.gene97477 | -0.822879 | 1.87E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene97477 | -0.800082 | 1.70E-48 | -1.69E-46 |
| MS.gene052965 | MS.gene97477 | 0.851645 | 7.76E-61 | -1.69E-46 |
| MS.gene053006 | MS.gene97477 | -0.819543 | 1.10E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene97477 | -0.811997 | 5.29E-51 | -1.69E-46 |
| MS.gene053085 | MS.gene97477 | -0.807567 | 4.75E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene97477 | -0.820639 | 6.17E-53 | -1.69E-46 |
| MS.gene05414 | MS.gene97477 | -0.819134 | 1.36E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene97477 | -0.84511 | 4.98E-59 | -1.69E-46 |
| MS.gene054291 | MS.gene97477 | 0.835902 | 1.28E-56 | -1.69E-46 |
| MS.gene054405 | MS.gene97477 | -0.83957 | 1.46E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene97477 | -0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene97477 | -0.830758 | 2.45E-55 | -1.69E-46 |
| MS.gene05510 | MS.gene97477 | -0.834759 | 2.49E-56 | -1.69E-46 |
| MS.gene055230 | MS.gene97477 | -0.807424 | 5.09E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene97477 | -0.858039 | 1.08E-62 | -1.69E-46 |
| MS.gene055818 | MS.gene97477 | -0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene97477 | -0.810939 | 8.98E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene97477 | -0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene97477 | -0.825584 | 4.33E-54 | -1.69E-46 |
| MS.gene057156 | MS.gene97477 | 0.83313 | 6.37E-56 | -1.69E-46 |
| MS.gene057598 | MS.gene97477 | -0.801164 | 1.02E-48 | -1.69E-46 |
| MS.gene05761 | MS.gene97477 | -0.843791 | 1.13E-58 | -1.69E-46 |
| MS.gene058146 | MS.gene97477 | -0.805296 | 1.43E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene97477 | -0.842619 | 2.32E-58 | -1.69E-46 |
| MS.gene05979 | MS.gene97477 | -0.807738 | 4.37E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene97477 | -0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene97477 | 0.845093 | 5.03E-59 | -1.69E-46 |
| MS.gene060322 | MS.gene97477 | -0.8251 | 5.63E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene97477 | 0.859239 | 4.74E-63 | -1.69E-46 |
| MS.gene060683 | MS.gene97477 | -0.835059 | 2.09E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene97477 | -0.831209 | 1.90E-55 | -1.69E-46 |
| MS.gene060802 | MS.gene97477 | -0.83352 | 5.09E-56 | -1.69E-46 |
| MS.gene060918 | MS.gene97477 | -0.835417 | 1.70E-56 | -1.69E-46 |
| MS.gene061040 | MS.gene97477 | 0.822118 | 2.81E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene97477 | 0.82564 | 4.20E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97477.t1 | MTR_7g056337 | 100.000 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 2.29e-112 | 317 |
| MS.gene97477.t1 | MTR_8g087430 | 71.242 | 153 | 44 | 0 | 1 | 153 | 63 | 215 | 6.33e-79 | 233 |
| MS.gene97477.t1 | MTR_4g075550 | 34.839 | 155 | 86 | 5 | 12 | 153 | 117 | 269 | 2.14e-22 | 90.1 |
| MS.gene97477.t1 | MTR_3g113920 | 34.783 | 161 | 90 | 5 | 6 | 153 | 111 | 269 | 9.68e-22 | 88.6 |
| MS.gene97477.t1 | MTR_8g012615 | 33.129 | 163 | 94 | 3 | 1 | 150 | 40 | 200 | 6.22e-19 | 79.7 |
| MS.gene97477.t1 | MTR_8g012595 | 31.579 | 152 | 88 | 3 | 12 | 149 | 118 | 267 | 3.51e-16 | 73.6 |
| MS.gene97477.t1 | MTR_8g012605 | 36.036 | 111 | 64 | 3 | 1 | 107 | 107 | 214 | 2.91e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97477.t1 | AT3G25040 | 85.621 | 153 | 22 | 0 | 1 | 153 | 63 | 215 | 9.09e-98 | 281 |
| MS.gene97477.t1 | AT1G29330 | 70.588 | 153 | 45 | 0 | 1 | 153 | 1 | 153 | 1.15e-79 | 233 |
| MS.gene97477.t1 | AT1G29330 | 70.588 | 153 | 45 | 0 | 1 | 153 | 63 | 215 | 1.34e-79 | 234 |
| MS.gene97477.t1 | AT1G75760 | 34.783 | 161 | 90 | 5 | 6 | 153 | 111 | 269 | 2.04e-22 | 90.1 |
| MS.gene97477.t1 | AT1G19970 | 35.484 | 155 | 85 | 5 | 12 | 153 | 117 | 269 | 5.52e-22 | 89.0 |
| MS.gene97477.t1 | AT4G38790 | 33.735 | 166 | 95 | 5 | 1 | 153 | 107 | 270 | 2.28e-21 | 87.4 |
| MS.gene97477.t1 | AT1G75760 | 33.784 | 148 | 84 | 4 | 6 | 141 | 111 | 256 | 1.07e-20 | 85.5 |
| MS.gene97477.t1 | AT3G25160 | 33.333 | 156 | 87 | 5 | 6 | 147 | 113 | 265 | 9.16e-20 | 83.2 |
| MS.gene97477.t1 | AT2G21190 | 31.928 | 166 | 98 | 5 | 1 | 153 | 103 | 266 | 1.45e-19 | 82.8 |
| MS.gene97477.t1 | AT1G75760 | 35.238 | 105 | 63 | 2 | 6 | 107 | 111 | 213 | 7.16e-17 | 74.7 |
| MS.gene97477.t1 | AT1G19970 | 36.364 | 99 | 58 | 2 | 12 | 107 | 117 | 213 | 4.28e-16 | 72.8 |
Find 34 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAGAAATTCACATTTA+AGG | 0.174751 | 7.3:-48898691 | MS.gene97477:CDS |
| TGTTATGAAGTTGATATTCT+TGG | 0.275463 | 7.3:-48898841 | None:intergenic |
| GGACAATATGTCTTTCTTCT+TGG | 0.280895 | 7.3:-48898438 | MS.gene97477:CDS |
| AGTATTGCCCTGCTTATTGT+TGG | 0.324545 | 7.3:-48898724 | MS.gene97477:CDS |
| AGAAACATTGACAATTTAAC+AGG | 0.337581 | 7.3:-48898459 | MS.gene97477:CDS |
| GACAATATGTCTTTCTTCTT+GGG | 0.345288 | 7.3:-48898437 | MS.gene97477:intron |
| GAGCACTATACATTCTCAAC+TGG | 0.354642 | 7.3:-48897699 | MS.gene97477:CDS |
| TGAATTTCTCATTGATAAGT+AGG | 0.405613 | 7.3:+48898700 | None:intergenic |
| CAGTACCAGTTGAGGAAGTA+TGG | 0.407791 | 7.3:+48898494 | None:intergenic |
| TGGCAACAGCTTCCAAATAC+AGG | 0.408291 | 7.3:+48898514 | None:intergenic |
| GTTATGAAGTTGATATTCTT+GGG | 0.424245 | 7.3:-48898840 | MS.gene97477:CDS |
| TGTTGCCATACTTCCTCAAC+TGG | 0.450840 | 7.3:-48898499 | MS.gene97477:CDS |
| CCGAGCCCCACTTTGTCCAT+TGG | 0.453725 | 7.3:-48897660 | MS.gene97477:CDS |
| ATGCTGGCAAATGAAGCTTC+TGG | 0.490077 | 7.3:+48897335 | None:intergenic |
| AAGTAGGGCCAACAATAAGC+AGG | 0.512666 | 7.3:+48898716 | None:intergenic |
| TAGATCATATGACAAAGATC+AGG | 0.514146 | 7.3:-48898769 | MS.gene97477:CDS |
| CCAATGGACAAAGTGGGGCT+CGG | 0.529481 | 7.3:+48897660 | None:intergenic |
| TACTTATCCAATGGACAAAG+TGG | 0.529817 | 7.3:+48897653 | None:intergenic |
| TATGGAGAATTACACTATGC+TGG | 0.546192 | 7.3:+48897319 | None:intergenic |
| CTTTGTAGCAGTACCAGTTG+AGG | 0.551696 | 7.3:+48898486 | None:intergenic |
| TTTCTATTGTATGGTACATG+AGG | 0.554169 | 7.3:-48898809 | MS.gene97477:CDS |
| TCTTCTACTACTATTTCCAA+AGG | 0.567268 | 7.3:-48897459 | MS.gene97477:intron |
| TGAGAAATTCACATTTAAGG+AGG | 0.576216 | 7.3:-48898688 | MS.gene97477:intron |
| GAATTTCTCATTGATAAGTA+GGG | 0.579233 | 7.3:+48898701 | None:intergenic |
| ACTTATCCAATGGACAAAGT+GGG | 0.585109 | 7.3:+48897654 | None:intergenic |
| TACTAGAAAATAGTGACGGA+AGG | 0.599670 | 7.3:+48898743 | None:intergenic |
| ACAGAATTATACTTATCCAA+TGG | 0.602023 | 7.3:+48897644 | None:intergenic |
| GGCAACAGCTTCCAAATACA+GGG | 0.635959 | 7.3:+48898515 | None:intergenic |
| CTTATCCAATGGACAAAGTG+GGG | 0.636328 | 7.3:+48897655 | None:intergenic |
| TATACATGGAATAGGTGATG+TGG | 0.652075 | 7.3:-48898545 | MS.gene97477:intron |
| AGCACTATACATTCTCAACT+GGG | 0.652774 | 7.3:-48897698 | MS.gene97477:CDS |
| GCAATACTAGAAAATAGTGA+CGG | 0.652982 | 7.3:+48898739 | None:intergenic |
| ATGATCTACGAACAATCTTG+TGG | 0.654874 | 7.3:+48898784 | None:intergenic |
| AGTAGGGCCAACAATAAGCA+GGG | 0.670399 | 7.3:+48898717 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATTAACATAAATAAAA+TGG | + | chr7.3:48898759-48898778 | None:intergenic | 10.0% |
| !! | ATGCAAATATATAATGTTAA+AGG | + | chr7.3:48897770-48897789 | None:intergenic | 15.0% |
| !! | CTAGATAAATTATAGCTAAT+GGG | - | chr7.3:48898091-48898110 | MS.gene97477:intron | 20.0% |
| !! | GCTATAATAAAAATAAGCAA+TGG | - | chr7.3:48898337-48898356 | MS.gene97477:intron | 20.0% |
| !! | TAAAAACATTCAAACATGTA+TGG | + | chr7.3:48897553-48897572 | None:intergenic | 20.0% |
| !! | TAGATAAATTATAGCTAATG+GGG | - | chr7.3:48898092-48898111 | MS.gene97477:intron | 20.0% |
| !! | TTATATATTTGCATGATTTC+TGG | - | chr7.3:48897776-48897795 | MS.gene97477:intron | 20.0% |
| !!! | AGTTGAAAGTTTTTATTTGT+TGG | - | chr7.3:48898225-48898244 | MS.gene97477:intron | 20.0% |
| !!! | TCTTGTTTAATTGTTATCAT+TGG | - | chr7.3:48898550-48898569 | MS.gene97477:intron | 20.0% |
| ! | AAAGCTAAAACAAGTTCAAA+TGG | + | chr7.3:48898385-48898404 | None:intergenic | 25.0% |
| ! | AAGCTAAAACAAGTTCAAAT+GGG | + | chr7.3:48898384-48898403 | None:intergenic | 25.0% |
| ! | AATTAGCAGCTATTATATTC+TGG | - | chr7.3:48897823-48897842 | MS.gene97477:intron | 25.0% |
| ! | ACAGAATTATACTTATCCAA+TGG | + | chr7.3:48898529-48898548 | None:intergenic | 25.0% |
| ! | ACTGTAATGTTTAACAATGA+TGG | + | chr7.3:48898604-48898623 | None:intergenic | 25.0% |
| ! | AGAAACATTGACAATTTAAC+AGG | - | chr7.3:48897711-48897730 | MS.gene97477:intron | 25.0% |
| ! | ATCATTGTTAAACATTACAG+TGG | - | chr7.3:48898603-48898622 | MS.gene97477:intron | 25.0% |
| ! | CAATGAGAAATTCACATTTA+AGG | - | chr7.3:48897479-48897498 | MS.gene97477:CDS | 25.0% |
| ! | CCATTAGCTATAATTTATCT+AGG | + | chr7.3:48898093-48898112 | None:intergenic | 25.0% |
| ! | CCTAGATAAATTATAGCTAA+TGG | - | chr7.3:48898090-48898109 | MS.gene97477:intron | 25.0% |
| ! | GAATTTCTCATTGATAAGTA+GGG | + | chr7.3:48897472-48897491 | None:intergenic | 25.0% |
| ! | TACTATTTCCAAAGGTAAAT+TGG | - | chr7.3:48898719-48898738 | MS.gene97477:CDS | 25.0% |
| ! | TATAATTTATCTAGGTGAGT+TGG | + | chr7.3:48898085-48898104 | None:intergenic | 25.0% |
| ! | TGAATTTCTCATTGATAAGT+AGG | + | chr7.3:48897473-48897492 | None:intergenic | 25.0% |
| ! | TTTCATGTAACATGTTGTAT+AGG | - | chr7.3:48898043-48898062 | MS.gene97477:intron | 25.0% |
| !!! | TTGAACTTGTTTTAGCTTTT+AGG | - | chr7.3:48898386-48898405 | MS.gene97477:intron | 25.0% |
| AAACTGCTTATACATGGAAT+AGG | - | chr7.3:48897617-48897636 | MS.gene97477:intron | 30.0% | |
| AACCTTAATAAGCAGAACTT+TGG | + | chr7.3:48898283-48898302 | None:intergenic | 30.0% | |
| ATGGTAACTTTGTATATCAG+AGG | - | chr7.3:48898356-48898375 | MS.gene97477:intron | 30.0% | |
| CAACTCAAGATCATAATAGA+AGG | + | chr7.3:48898210-48898229 | None:intergenic | 30.0% | |
| GACAATATGTCTTTCTTCTT+GGG | - | chr7.3:48897733-48897752 | MS.gene97477:intron | 30.0% | |
| GCAATACTAGAAAATAGTGA+CGG | + | chr7.3:48897434-48897453 | None:intergenic | 30.0% | |
| TAGATCATATGACAAAGATC+AGG | - | chr7.3:48897401-48897420 | MS.gene97477:intron | 30.0% | |
| TCTTCTACTACTATTTCCAA+AGG | - | chr7.3:48898711-48898730 | MS.gene97477:CDS | 30.0% | |
| TGAAAATATTGCCTTGTAGT+TGG | - | chr7.3:48898804-48898823 | MS.gene97477:CDS | 30.0% | |
| TGAGAAATTCACATTTAAGG+AGG | - | chr7.3:48897482-48897501 | MS.gene97477:CDS | 30.0% | |
| TTTCTATTGTATGGTACATG+AGG | - | chr7.3:48897361-48897380 | MS.gene97477:intron | 30.0% | |
| ! | ATTCCATGTATAAGCAGTTT+TGG | + | chr7.3:48897617-48897636 | None:intergenic | 30.0% |
| ! | GAAGCTCATTTTCTATTGTA+TGG | - | chr7.3:48897352-48897371 | MS.gene97477:intron | 30.0% |
| ! | TATATTTGCATGATTTCTGG+TGG | - | chr7.3:48897779-48897798 | MS.gene97477:intron | 30.0% |
| ! | TTCCATGTATAAGCAGTTTT+GGG | + | chr7.3:48897616-48897635 | None:intergenic | 30.0% |
| ! | TTTATTTGTTGGAACGAAAC+TGG | - | chr7.3:48898236-48898255 | MS.gene97477:intron | 30.0% |
| ACTTATCCAATGGACAAAGT+GGG | + | chr7.3:48898519-48898538 | None:intergenic | 35.0% | |
| AGCACTATACATTCTCAACT+GGG | - | chr7.3:48898472-48898491 | MS.gene97477:CDS | 35.0% | |
| AGCCAAAGTTCTGCTTATTA+AGG | - | chr7.3:48898278-48898297 | MS.gene97477:intron | 35.0% | |
| ATAAAATGGACCTGACAAGT+AGG | + | chr7.3:48898745-48898764 | None:intergenic | 35.0% | |
| ATGATCTACGAACAATCTTG+TGG | + | chr7.3:48897389-48897408 | None:intergenic | 35.0% | |
| GGACAATATGTCTTTCTTCT+TGG | - | chr7.3:48897732-48897751 | MS.gene97477:intron | 35.0% | |
| GGCTTCAAGATCATAATAGA+AGG | + | chr7.3:48898262-48898281 | None:intergenic | 35.0% | |
| TACTTATCCAATGGACAAAG+TGG | + | chr7.3:48898520-48898539 | None:intergenic | 35.0% | |
| TATACATGGAATAGGTGATG+TGG | - | chr7.3:48897625-48897644 | MS.gene97477:intron | 35.0% | |
| TTGAAACTGATCAATGAGAC+TGG | - | chr7.3:48898184-48898203 | MS.gene97477:intron | 35.0% | |
| TTGGTTTATGCTCTTTAGAC+TGG | - | chr7.3:48898569-48898588 | MS.gene97477:intron | 35.0% | |
| TTTCAATGAAGCCAACAAAC+AGG | + | chr7.3:48898170-48898189 | None:intergenic | 35.0% | |
| ! | CATTACTTCTTTTGCAGCAT+GGG | - | chr7.3:48898652-48898671 | MS.gene97477:intron | 35.0% |
| ! | TACTAGAAAATAGTGACGGA+AGG | + | chr7.3:48897430-48897449 | None:intergenic | 35.0% |
| AATGGAAGGAAGTCAGAACA+AGG | + | chr7.3:48898636-48898655 | None:intergenic | 40.0% | |
| AGACCAACCTTCCAGTTATT+TGG | + | chr7.3:48897874-48897893 | None:intergenic | 40.0% | |
| AGTATTGCCCTGCTTATTGT+TGG | - | chr7.3:48897446-48897465 | MS.gene97477:intron | 40.0% | |
| CAAGTAGGCCAATTTACCTT+TGG | + | chr7.3:48898730-48898749 | None:intergenic | 40.0% | |
| CCATGCTGCAAAAGAAGTAA+TGG | + | chr7.3:48898654-48898673 | None:intergenic | 40.0% | |
| CTGATCAACAGCCAAATAAC+TGG | - | chr7.3:48897860-48897879 | MS.gene97477:intron | 40.0% | |
| CTTATCCAATGGACAAAGTG+GGG | + | chr7.3:48898518-48898537 | None:intergenic | 40.0% | |
| CTTTCTTCTTGGGTAAGCTA+TGG | - | chr7.3:48897743-48897762 | MS.gene97477:intron | 40.0% | |
| CTTTGTCTGTGAAATGCAGT+GGG | - | chr7.3:48898444-48898463 | MS.gene97477:CDS | 40.0% | |
| GAGCACTATACATTCTCAAC+TGG | - | chr7.3:48898471-48898490 | MS.gene97477:CDS | 40.0% | |
| GCTCAAAACTAAGACGAACA+AGG | + | chr7.3:48898781-48898800 | None:intergenic | 40.0% | |
| GTCCCAAAACTGCTTATACA+TGG | - | chr7.3:48897611-48897630 | MS.gene97477:intron | 40.0% | |
| TAGCTAATGGGGACAACAAA+AGG | - | chr7.3:48898103-48898122 | MS.gene97477:intron | 40.0% | |
| TCAACAGCCAAATAACTGGA+AGG | - | chr7.3:48897864-48897883 | MS.gene97477:intron | 40.0% | |
| TGGTTGTTCTTCCAACTACA+AGG | + | chr7.3:48898818-48898837 | None:intergenic | 40.0% | |
| ! | CCATTACTTCTTTTGCAGCA+TGG | - | chr7.3:48898651-48898670 | MS.gene97477:intron | 40.0% |
| ! | GCTGCAAAAGAAGTAATGGA+AGG | + | chr7.3:48898650-48898669 | None:intergenic | 40.0% |
| ! | GTGAGTTGGATTGACAACTT+TGG | + | chr7.3:48898071-48898090 | None:intergenic | 40.0% |
| ! | GTGGACATTTTCCCTGTATT+TGG | - | chr7.3:48897644-48897663 | MS.gene97477:intron | 40.0% |
| AAGTAGGGCCAACAATAAGC+AGG | + | chr7.3:48897457-48897476 | None:intergenic | 45.0% | |
| AGTAGGGCCAACAATAAGCA+GGG | + | chr7.3:48897456-48897475 | None:intergenic | 45.0% | |
| ATGCTGGCAAATGAAGCTTC+TGG | + | chr7.3:48898838-48898857 | None:intergenic | 45.0% | |
| CAGCCAAATAACTGGAAGGT+TGG | - | chr7.3:48897868-48897887 | MS.gene97477:intron | 45.0% | |
| CAGTACCAGTTGAGGAAGTA+TGG | + | chr7.3:48897679-48897698 | None:intergenic | 45.0% | |
| CTTTGTAGCAGTACCAGTTG+AGG | + | chr7.3:48897687-48897706 | None:intergenic | 45.0% | |
| GCATAGAACGAGCTTAGTAG+TGG | - | chr7.3:48897912-48897931 | MS.gene97477:intron | 45.0% | |
| GCTTTGTCTGTGAAATGCAG+TGG | - | chr7.3:48898443-48898462 | MS.gene97477:CDS | 45.0% | |
| GGCAACAGCTTCCAAATACA+GGG | + | chr7.3:48897658-48897677 | None:intergenic | 45.0% | |
| TGGCAACAGCTTCCAAATAC+AGG | + | chr7.3:48897659-48897678 | None:intergenic | 45.0% | |
| TGTTGCCATACTTCCTCAAC+TGG | - | chr7.3:48897671-48897690 | MS.gene97477:CDS | 45.0% | |
| ! | CTTTTGCAGCATGGGTTTCT+GGG | - | chr7.3:48898660-48898679 | MS.gene97477:intron | 45.0% |
| ! | GGTAAATTGGCCTACTTGTC+AGG | - | chr7.3:48898732-48898751 | MS.gene97477:CDS | 45.0% |
| ! | TCTTTTGCAGCATGGGTTTC+TGG | - | chr7.3:48898659-48898678 | MS.gene97477:intron | 45.0% |
| !! | TTAGTTTGCAGTAGTGCTCG+TGG | - | chr7.3:48898139-48898158 | MS.gene97477:intron | 45.0% |
| TCGTGGACAAGCCTGTTTGT+TGG | - | chr7.3:48898156-48898175 | MS.gene97477:intron | 50.0% | |
| CCAATGGACAAAGTGGGGCT+CGG | + | chr7.3:48898513-48898532 | None:intergenic | 55.0% | |
| CCGAGCCCCACTTTGTCCAT+TGG | - | chr7.3:48898510-48898529 | MS.gene97477:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 48897333 | 48898859 | 48897333 | ID=MS.gene97477 |
| chr7.3 | mRNA | 48897333 | 48898859 | 48897333 | ID=MS.gene97477.t1;Parent=MS.gene97477 |
| chr7.3 | exon | 48898689 | 48898859 | 48898689 | ID=MS.gene97477.t1.exon1;Parent=MS.gene97477.t1 |
| chr7.3 | CDS | 48898689 | 48898859 | 48898689 | ID=cds.MS.gene97477.t1;Parent=MS.gene97477.t1 |
| chr7.3 | exon | 48898438 | 48898553 | 48898438 | ID=MS.gene97477.t1.exon2;Parent=MS.gene97477.t1 |
| chr7.3 | CDS | 48898438 | 48898553 | 48898438 | ID=cds.MS.gene97477.t1;Parent=MS.gene97477.t1 |
| chr7.3 | exon | 48897656 | 48897729 | 48897656 | ID=MS.gene97477.t1.exon3;Parent=MS.gene97477.t1 |
| chr7.3 | CDS | 48897656 | 48897729 | 48897656 | ID=cds.MS.gene97477.t1;Parent=MS.gene97477.t1 |
| chr7.3 | exon | 48897460 | 48897523 | 48897460 | ID=MS.gene97477.t1.exon4;Parent=MS.gene97477.t1 |
| chr7.3 | CDS | 48897460 | 48897523 | 48897460 | ID=cds.MS.gene97477.t1;Parent=MS.gene97477.t1 |
| chr7.3 | exon | 48897333 | 48897369 | 48897333 | ID=MS.gene97477.t1.exon5;Parent=MS.gene97477.t1 |
| chr7.3 | CDS | 48897333 | 48897369 | 48897333 | ID=cds.MS.gene97477.t1;Parent=MS.gene97477.t1 |
| Gene Sequence |
| Protein sequence |
