AlfalfaGEDB | MS.gene98318

M. sativa cultivar XinJiangDaYe / MS.gene98318

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98318.t1	XP_013460895.1	96.8	220	7	0	1	220	1	220	3.30E-117	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98318.t1	A0A072UYT0	96.8	220	7	0	1	220	1	220	2.4e-117	431.0

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene98318	0.806293	8.83E-50	-1.69E-46
MS.gene049382	MS.gene98318	0.800546	1.37E-48	-1.69E-46
MS.gene049758	MS.gene98318	0.824448	8.03E-54	-1.69E-46
MS.gene050020	MS.gene98318	0.813743	2.19E-51	-1.69E-46
MS.gene050128	MS.gene98318	0.825727	4.00E-54	-1.69E-46
MS.gene050584	MS.gene98318	0.834576	2.77E-56	-1.69E-46
MS.gene050585	MS.gene98318	0.806192	9.27E-50	-1.69E-46
MS.gene050586	MS.gene98318	0.829129	6.12E-55	-1.69E-46
MS.gene050762	MS.gene98318	0.800716	1.26E-48	-1.69E-46
MS.gene050763	MS.gene98318	0.802814	4.69E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98318.t1	MTR_3g074450	96.818	220	7	0	1	220	1	220	1.07e-159	440
MS.gene98318.t1	MTR_5g063720	53.540	226	82	10	1	217	1	212	3.83e-58	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98318.t1	AT1G78170	34.804	204	111	8	18	211	21	212	2.00e-19	83.6
MS.gene98318.t1	AT1G22250	40.870	115	55	4	101	208	80	188	4.83e-16	73.9
MS.gene98318.t1	AT4G08910	40.000	120	45	3	102	203	86	196	1.16e-15	73.2

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Find 43 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTCGGGTGGTTTAAA+CGG	0.409779	3.1:+61039581	MS.gene98318:CDS
AACTTCAGTTCTTGGAGTCA+TGG	0.494815	3.1:-61039065	None:intergenic
AAGCAAGTTTAAGAAAGATT+CGG	0.375998	3.1:+61039568	MS.gene98318:CDS
AAGCTCATGTGATCAGAAGA+AGG	0.583375	3.1:-61039425	None:intergenic
AAGTTTAAGAAAGATTCGGG+TGG	0.705138	3.1:+61039572	MS.gene98318:CDS
AATAATTGGTGTCAATACCT+TGG	0.524933	3.1:+61039226	MS.gene98318:CDS
AATTTGCAGTTAGGACAAGC+AGG	0.557243	3.1:-61039704	None:intergenic
ACTTGACATGTGAATCACAA+AGG	0.656443	3.1:+61039462	MS.gene98318:CDS
AGCAAGTTTAAGAAAGATTC+GGG	0.373167	3.1:+61039569	MS.gene98318:CDS
AGTGATCAGAAGAAGAATTC+TGG	0.461088	3.1:+61039497	MS.gene98318:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAAGTTTAAGAAAGATTC+GGG	+	chr3.1:61039569-61039588	MS.gene98318:CDS	30.0%
CCAATTATTTGAAGGAAACA+TGG	-	chr3.1:61039215-61039234	None:intergenic	30.0%
CCATGTTTCCTTCAAATAAT+TGG	+	chr3.1:61039212-61039231	MS.gene98318:CDS	30.0%
AAAGATTCGGGTGGTTTAAA+CGG	+	chr3.1:61039581-61039600	MS.gene98318:CDS	35.0%
AAGTTTAAGAAAGATTCGGG+TGG	+	chr3.1:61039572-61039591	MS.gene98318:CDS	35.0%
ACTTGACATGTGAATCACAA+AGG	+	chr3.1:61039462-61039481	MS.gene98318:CDS	35.0%
AGTGATCAGAAGAAGAATTC+TGG	+	chr3.1:61039497-61039516	MS.gene98318:CDS	35.0%
ATCATGTTCTGTCAAACTCT+TGG	-	chr3.1:61039531-61039550	None:intergenic	35.0%
CAACATATACCTGAATACCA+AGG	-	chr3.1:61039246-61039265	None:intergenic	35.0%
CATCTCTTTGTAATCTCCTT+CGG	-	chr3.1:61039630-61039649	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	61039040	61039796	61039040	ID=MS.gene98318
chr3.1	mRNA	61039040	61039796	61039040	ID=MS.gene98318.t1;Parent=MS.gene98318
chr3.1	exon	61039040	61039255	61039040	ID=MS.gene98318.t1.exon1;Parent=MS.gene98318.t1
chr3.1	CDS	61039040	61039255	61039040	ID=cds.MS.gene98318.t1;Parent=MS.gene98318.t1
chr3.1	exon	61039350	61039796	61039350	ID=MS.gene98318.t1.exon2;Parent=MS.gene98318.t1
chr3.1	CDS	61039350	61039796	61039350	ID=cds.MS.gene98318.t1;Parent=MS.gene98318.t1

Gene Sequence

>MS.gene98318

ATGGTATCCTTATTCAAAGCACTGTCCATGACTCCAAGAACTGAAGTTAAAGAAGAATTTGAAGCATCAAAGAAAAGAAAGTTTGAGGAACCATTTACTGAAGAATTCTTCAAGGATCAAACAAATTTAGAGAAAAGGAAATCCACCTTTGATACAAAGCCTCCCCTAGAGACCATGTTTCCTTCAAATAATTGGTGTCAATACCTTGGTATTCAGGTATATGTTGTATAGTATATATATTGTCAAACTTTATACAAAATTCCAATGATATCATATCTTATGATCAATCTTTAATTTTTTTTATGTGCAGTCAGGGAAGATACAGTTGTGTAACACAAGACCCGATCGGACAACGATAGAAACCTCGAAACGAAGCCTGCGACAACCTTCTTCTGATCACATGAGCTTAGACCTTGAGCTAAACTTGACATGTGAATCACAAAGGAAAAACAAAAACAGTGATCAGAAGAAGAATTCTGGTAATTCTCCCAAGAGTTTGACAGAACATGATGATCTTTGTATTGAATCAAGCAAGTTTAAGAAAGATTCGGGTGGTTTAAACGGTTCTCAGTCGTGGTTGTCGACAACCGAAGGAGATTACAAAGAGATGGTTGCAACAGTTTGCATGCAGTGTCACATGTTGGTAATGATATGCAAGTCATCTCCTGCTTGTCCTAACTGCAAATTCATGCACTCACCAGACCAGAACCCTTCAAAATTCTTGAAGAGCAGATGCAGCTTCTTCTGCTCTAGTTAG

Protein sequence

>MS.gene98318.t1

MVSLFKALSMTPRTEVKEEFEASKKRKFEEPFTEEFFKDQTNLEKRKSTFDTKPPLETMFPSNNWCQYLGIQSGKIQLCNTRPDRTTIETSKRSLRQPSSDHMSLDLELNLTCESQRKNKNSDQKKNSGNSPKSLTEHDDLCIESSKFKKDSGGLNGSQSWLSTTEGDYKEMVATVCMQCHMLVMICKSSPACPNCKFMHSPDQNPSKFLKSRCSFFCSS