AlfalfaGEDB | MsG0280007335.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007335.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007335.01.T01	XP_013445975.1	94.382	89	5	0	8	96	576	664	1.08E-41	155

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007335.01.T01	A0A072TRI0	94.382	89	5	0	8	96	576	664	5.15e-42	155

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0280007335.01	0.803824	2.899251e-49	1.471471e-46
MsG0080047944.01	MsG0280007335.01	0.818327	2.076725e-52	1.549774e-49
MsG0080047957.01	MsG0280007335.01	0.825963	3.519553e-54	3.256454e-51
MsG0080047959.01	MsG0280007335.01	0.831988	1.221589e-55	1.347479e-52
MsG0080048431.01	MsG0280007335.01	0.801476	8.842049e-49	4.226776e-46
MsG0080048462.01	MsG0280007335.01	0.811426	7.041608e-51	4.357586e-48
MsG0080048874.01	MsG0280007335.01	0.814486	1.503769e-51	1.010342e-48
MsG0180000145.01	MsG0280007335.01	0.819471	1.141274e-52	8.791012e-50
MsG0180000470.01	MsG0280007335.01	0.848649	5.356373e-60	9.896748e-57
MsG0180001892.01	MsG0280007335.01	0.822946	1.804502e-53	1.532326e-50
MsG0180001971.01	MsG0280007335.01	0.812614	3.879996e-51	2.478460e-48
MsG0180002842.01	MsG0280007335.01	0.820371	7.106109e-53	5.612405e-50
MsG0180003669.01	MsG0280007335.01	0.816728	4.760622e-52	3.400103e-49
MsG0180003673.01	MsG0280007335.01	0.805688	1.183194e-49	6.300312e-47
MsG0180003686.01	MsG0280007335.01	0.813731	2.206153e-51	1.452230e-48
MsG0180004264.01	MsG0280007335.01	0.806606	7.581191e-50	4.132487e-47
MsG0180004389.01	MsG0280007335.01	0.816018	6.864754e-52	4.808819e-49
MsG0180005050.01	MsG0280007335.01	0.804294	2.314699e-49	1.189062e-46
MsG0180005457.01	MsG0280007335.01	0.814993	1.160669e-51	7.905759e-49
MsG0180006134.01	MsG0280007335.01	0.814086	1.842495e-51	1.224541e-48
MsG0280006299.01	MsG0280007335.01	0.806523	7.891588e-50	4.292632e-47
MsG0280006324.01	MsG0280007335.01	0.833992	3.878421e-56	4.541591e-53
MsG0280006770.01	MsG0280007335.01	0.809539	1.800323e-50	1.059870e-47
MsG0280007072.01	MsG0280007335.01	0.807381	5.197562e-50	2.890703e-47
MsG0280007335.01	MsG0280007955.01	0.827737	1.326208e-54	1.291445e-51
MsG0280007335.01	MsG0280008112.01	0.826400	2.769614e-54	2.594643e-51
MsG0280007335.01	MsG0280008615.01	0.821485	3.936983e-53	3.207173e-50
MsG0280007335.01	MsG0280009421.01	0.806964	6.368355e-50	3.503601e-47
MsG0280007335.01	MsG0280010443.01	0.836268	1.033680e-56	1.296182e-53
MsG0280007335.01	MsG0280010698.01	0.802012	6.864794e-49	3.326366e-46
MsG0280007335.01	MsG0280010992.01	0.816447	5.504146e-52	3.900820e-49
MsG0280007335.01	MsG0380011609.01	0.806718	7.180922e-50	3.925595e-47
MsG0280007335.01	MsG0380012009.01	0.810925	9.044562e-51	5.523687e-48
MsG0280007335.01	MsG0380014173.01	0.826201	3.089880e-54	2.878315e-51
MsG0280007335.01	MsG0380014537.01	0.814904	1.214854e-51	8.254222e-49
MsG0280007335.01	MsG0380014573.01	0.814801	1.280204e-51	8.674620e-49
MsG0280007335.01	MsG0380015555.01	0.803296	3.730776e-49	1.867896e-46
MsG0280007335.01	MsG0380015566.01	0.821605	3.694906e-53	3.019966e-50
MsG0280007335.01	MsG0380015720.01	0.804838	1.782526e-49	9.286737e-47
MsG0280007335.01	MsG0380016064.01	0.812834	3.472137e-51	2.230627e-48
MsG0280007335.01	MsG0380016285.01	0.836307	1.010246e-56	1.268337e-53
MsG0280007335.01	MsG0380016910.01	0.813393	2.617930e-51	1.707626e-48
MsG0280007335.01	MsG0380017048.01	0.829543	4.852677e-55	4.981583e-52
MsG0280007335.01	MsG0380017060.01	0.833250	5.940129e-56	6.802545e-53
MsG0280007335.01	MsG0380017326.01	0.846269	2.414679e-59	4.133290e-56
MsG0280007335.01	MsG0380017461.01	0.810621	1.052310e-50	6.374313e-48
MsG0280007335.01	MsG0380017543.01	0.839621	1.420449e-57	1.972587e-54
MsG0280007335.01	MsG0380017551.01	-0.808252	3.392510e-50	1.930404e-47
MsG0280007335.01	MsG0480018163.01	0.818161	2.264943e-52	1.682442e-49
MsG0280007335.01	MsG0480018183.01	0.804787	1.827041e-49	9.505709e-47
MsG0280007335.01	MsG0480018236.01	0.854314	1.336453e-61	2.972465e-58
MsG0280007335.01	MsG0480018318.01	0.802272	6.069954e-49	2.960842e-46
MsG0280007335.01	MsG0480018883.01	0.810774	9.749563e-51	5.930133e-48
MsG0280007335.01	MsG0480019435.01	0.810175	1.313611e-50	7.863563e-48
MsG0280007335.01	MsG0480020832.01	0.801727	7.854838e-49	3.778586e-46
MsG0280007335.01	MsG0480021274.01	0.801658	8.116541e-49	3.897630e-46
MsG0280007335.01	MsG0480021558.01	0.833278	5.847004e-56	6.701183e-53
MsG0280007335.01	MsG0480021853.01	0.808429	3.110713e-50	1.778275e-47
MsG0280007335.01	MsG0480021925.01	0.827735	1.327558e-54	1.292682e-51
MsG0280007335.01	MsG0480022068.01	0.836544	8.795037e-57	1.111819e-53
MsG0280007335.01	MsG0480022222.01	0.814706	1.343864e-51	9.082572e-49
MsG0280007335.01	MsG0480022615.01	-0.823617	1.258062e-53	1.088737e-50
MsG0280007335.01	MsG0480023489.01	0.805934	1.050448e-49	5.628744e-47
MsG0280007335.01	MsG0480023654.01	0.838884	2.205916e-57	2.994996e-54
MsG0280007335.01	MsG0580024038.01	0.815697	8.094522e-52	5.620602e-49
MsG0280007335.01	MsG0580024363.01	-0.802669	5.028294e-49	2.477588e-46
MsG0280007335.01	MsG0580025022.01	0.808023	3.796120e-50	2.146930e-47
MsG0280007335.01	MsG0580025448.01	0.808296	3.320644e-50	1.891638e-47
MsG0280007335.01	MsG0580027152.01	0.808725	2.689230e-50	1.549124e-47
MsG0280007335.01	MsG0580027211.01	0.808839	2.542933e-50	1.469254e-47
MsG0280007335.01	MsG0580027320.01	0.808448	3.081513e-50	1.762494e-47
MsG0280007335.01	MsG0580027922.01	0.801113	1.049306e-48	4.970369e-46
MsG0280007335.01	MsG0580028527.01	0.807522	4.851084e-50	2.707929e-47
MsG0280007335.01	MsG0580029554.01	0.801123	1.044518e-48	4.948928e-46
MsG0280007335.01	MsG0680031101.01	0.803875	2.828996e-49	1.437775e-46
MsG0280007335.01	MsG0680031379.01	0.825382	4.832836e-54	4.397941e-51
MsG0280007335.01	MsG0680031617.01	0.804606	1.992508e-49	1.031799e-46
MsG0280007335.01	MsG0680032157.01	0.830053	3.646148e-55	3.798865e-52
MsG0280007335.01	MsG0680033928.01	0.802756	4.822805e-49	2.381723e-46
MsG0280007335.01	MsG0680034230.01	0.806793	6.920703e-50	3.790764e-47
MsG0280007335.01	MsG0680034565.01	0.804477	2.120407e-49	1.094350e-46
MsG0280007335.01	MsG0680035444.01	0.807043	6.128651e-50	3.378666e-47
MsG0280007335.01	MsG0780036128.01	0.804501	2.095506e-49	1.082160e-46
MsG0280007335.01	MsG0780037054.01	0.818676	1.731119e-52	1.304322e-49
MsG0280007335.01	MsG0780037146.01	0.801567	8.473401e-49	4.059686e-46
MsG0280007335.01	MsG0780037918.01	0.801460	8.909022e-49	4.257014e-46
MsG0280007335.01	MsG0780038386.01	0.808530	2.959939e-50	1.696514e-47
MsG0280007335.01	MsG0780038439.01	0.809192	2.136950e-50	1.246483e-47
MsG0280007335.01	MsG0780039170.01	0.806947	6.422121e-50	3.531638e-47
MsG0280007335.01	MsG0780039252.01	0.803335	3.660858e-49	1.834765e-46
MsG0280007335.01	MsG0780039423.01	0.802297	5.998712e-49	2.928072e-46
MsG0280007335.01	MsG0780039443.01	0.809484	1.849726e-50	1.087325e-47
MsG0280007335.01	MsG0780039867.01	-0.820709	5.943815e-53	4.738448e-50
MsG0280007335.01	MsG0780040576.01	-0.831028	2.105253e-55	2.256869e-52
MsG0280007335.01	MsG0780040704.01	0.820694	5.992314e-53	4.774850e-50
MsG0280007335.01	MsG0780041242.01	0.803920	2.768988e-49	1.408908e-46
MsG0280007335.01	MsG0780041456.01	0.800309	1.531335e-48	7.107301e-46
MsG0280007335.01	MsG0880041836.01	0.801121	1.045312e-48	4.952469e-46
MsG0280007335.01	MsG0880041861.01	0.805839	1.099583e-49	5.877816e-47
MsG0280007335.01	MsG0880041863.01	0.812505	4.099896e-51	2.611419e-48
MsG0280007335.01	MsG0880043509.01	0.801184	1.014898e-48	4.815831e-46
MsG0280007335.01	MsG0880044210.01	0.820696	5.983128e-53	4.768039e-50
MsG0280007335.01	MsG0880044416.01	0.805195	1.500943e-49	7.891338e-47
MsG0280007335.01	MsG0880044554.01	0.800185	1.622898e-48	7.508167e-46
MsG0280007335.01	MsG0880044574.01	0.805007	1.643127e-49	8.597250e-47
MsG0280007335.01	MsG0880045111.01	0.838466	2.827779e-57	3.790823e-54
MsG0280007335.01	MsG0880045736.01	0.830607	2.670084e-55	2.827123e-52
MsG0280007335.01	MsG0880045895.01	0.817482	3.223313e-52	2.350290e-49
MsG0280007335.01	MsG0880045896.01	0.823741	1.176618e-53	1.021951e-50
MsG0280007335.01	MsG0880046012.01	0.805006	1.643761e-49	8.600438e-47
MsG0280007335.01	MsG0880046531.01	0.817721	2.847847e-52	2.090120e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007335.01.T01	MTR_8g064470	94.382	89	5	0	8	96	576	664	1.31e-45	155

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 13 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCTTCTCCTCTCATCTTC+TGG	0.357567	2:-13838690	MsG0280007335.01.T01:CDS
GAATCTTCTCCGTCATCTGC+TGG	0.462652	2:-13838576	MsG0280007335.01.T01:CDS
GAATCTTCGCCGTCATCTGC+TGG	0.474227	2:-13838519	MsG0280007335.01.T01:CDS
ATCTTCGATCGAAGAGTCCT+TGG	0.482268	2:+13838470	None:intergenic
GAATCGTCTCTGTCATCTGC+TGG	0.498900	2:-13838633	MsG0280007335.01.T01:CDS
AAGGACTCTTCGATCGAAGA+TGG	0.544420	2:-13838468	MsG0280007335.01.T01:CDS
TGACAGAGACGATTCTGTCT+TGG	0.561155	2:+13838641	None:intergenic
TGACGGCGAAGATTCTGTCT+TGG	0.569351	2:+13838527	None:intergenic
TGACGGAGAAGATTCTGTCT+TGG	0.569351	2:+13838584	None:intergenic
ATTGCAGCGCCAGCAGATGA+CGG	0.580513	2:+13838567	None:intergenic
TTTGCAACACCAGCAGATGA+CGG	0.613033	2:+13838510	None:intergenic
TTGCAGCGCCAGAAGATGAG+AGG	0.615069	2:+13838682	None:intergenic
TGAATGTGTTGAGACTGCCA+AGG	0.781648	2:-13838487	MsG0280007335.01.T01:CDS

CRISPR-GE

sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTCTCCTCTCATCTTC+TGG	-	Chr2:13838446-13838465	MsG0280007335.01.T01:CDS	40.0%
AAGGACTCTTCGATCGAAGA+TGG	-	Chr2:13838668-13838687	MsG0280007335.01.T01:CDS	45.0%
ATCTTCGATCGAAGAGTCCT+TGG	+	Chr2:13838669-13838688	None:intergenic	45.0%
TGAATGTGTTGAGACTGCCA+AGG	-	Chr2:13838649-13838668	MsG0280007335.01.T01:CDS	45.0%
TGACAGAGACGATTCTGTCT+TGG	+	Chr2:13838498-13838517	None:intergenic	45.0%
TGACGGAGAAGATTCTGTCT+TGG	+	Chr2:13838555-13838574	None:intergenic	45.0%
TTTGCAACACCAGCAGATGA+CGG	+	Chr2:13838629-13838648	None:intergenic	45.0%
GAATCGTCTCTGTCATCTGC+TGG	-	Chr2:13838503-13838522	MsG0280007335.01.T01:CDS	50.0%
GAATCTTCTCCGTCATCTGC+TGG	-	Chr2:13838560-13838579	MsG0280007335.01.T01:CDS	50.0%
TGACGGCGAAGATTCTGTCT+TGG	+	Chr2:13838612-13838631	None:intergenic	50.0%
ATTGCAGCGCCAGCAGATGA+CGG	+	Chr2:13838572-13838591	None:intergenic	55.0%
GAATCTTCGCCGTCATCTGC+TGG	-	Chr2:13838617-13838636	MsG0280007335.01.T01:CDS	55.0%
TTGCAGCGCCAGAAGATGAG+AGG	+	Chr2:13838457-13838476	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	13838434	13838724	13838434	ID=MsG0280007335.01;Name=MsG0280007335.01
Chr2	mRNA	13838434	13838724	13838434	ID=MsG0280007335.01.T01;Parent=MsG0280007335.01;Name=MsG0280007335.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|96
Chr2	exon	13838434	13838724	13838434	ID=MsG0280007335.01.T01:exon:9427;Parent=MsG0280007335.01.T01
Chr2	CDS	13838434	13838724	13838434	ID=MsG0280007335.01.T01:cds;Parent=MsG0280007335.01.T01

Gene Sequence	>MsG0280007335.01.T01 ATGGCATCACAGAATCTTCTCCTCTCATCTTCTGGCGCTGCAACTGAATGCGTTGAGACTGCCAAGACAGAATCGTCTCTGTCATCTGCTGGCGCTGCAACTGAATGCGTTGAGACTGCCAAGACAGAATCTTCTCCGTCATCTGCTGGCGCTGCAATCGAATGTGTTGAGATTGCCAAGACAGAATCTTCGCCGTCATCTGCTGGTGTTGCAAATGAATGTGTTGAGACTGCCAAGGACTCTTCGATCGAAGATGGCATCACGAGTTGCAATTCTGACATTATTGAATGA
Protein sequence	>MsG0280007335.01.T01 MASQNLLLSSSGAATECVETAKTESSLSSAGAATECVETAKTESSPSSAGAAIECVEIAKTESSPSSAGVANECVETAKDSSIEDGITSCNSDIIE*