Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000729.01.T01 | XP_003588657.1 | 85.685 | 489 | 58 | 3 | 1 | 484 | 1 | 482 | 0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000729.01.T01 | G7I5R9 | 85.685 | 489 | 58 | 3 | 1 | 484 | 1 | 482 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048035.01 | MsG0180000729.01 | 0.841241 | 5.353563e-58 | 7.817314e-55 |
| MsG0180000479.01 | MsG0180000729.01 | 0.810311 | 1.227497e-50 | 7.374325e-48 |
| MsG0180000567.01 | MsG0180000729.01 | 0.801127 | 1.042391e-48 | 4.939424e-46 |
| MsG0180000729.01 | MsG0180002912.01 | 0.852532 | 4.340052e-61 | 9.095577e-58 |
| MsG0180000729.01 | MsG0180003948.01 | 0.822218 | 2.664463e-53 | 2.216132e-50 |
| MsG0180000729.01 | MsG0180004060.01 | 0.821006 | 5.078837e-53 | 4.083045e-50 |
| MsG0180000729.01 | MsG0180004300.01 | 0.820739 | 5.851156e-53 | 4.668287e-50 |
| MsG0180000729.01 | MsG0180004388.01 | 0.803758 | 2.992079e-49 | 1.516036e-46 |
| MsG0180000729.01 | MsG0180005172.01 | 0.804253 | 2.360687e-49 | 1.211353e-46 |
| MsG0180000729.01 | MsG0280006436.01 | 0.812054 | 5.141948e-51 | 3.235437e-48 |
| MsG0180000729.01 | MsG0280006586.01 | 0.828429 | 9.034593e-55 | 8.978129e-52 |
| MsG0180000729.01 | MsG0280007610.01 | 0.817264 | 3.609534e-52 | 2.616000e-49 |
| MsG0180000729.01 | MsG0280008590.01 | 0.852146 | 5.590626e-61 | 1.157362e-57 |
| MsG0180000729.01 | MsG0280008856.01 | 0.867191 | 1.641320e-65 | 5.679892e-62 |
| MsG0180000729.01 | MsG0280010459.01 | 0.813290 | 2.758940e-51 | 1.794418e-48 |
| MsG0180000729.01 | MsG0280010614.01 | 0.815879 | 7.374010e-52 | 5.145505e-49 |
| MsG0180000729.01 | MsG0280010824.01 | 0.807488 | 4.932126e-50 | 2.750729e-47 |
| MsG0180000729.01 | MsG0380013480.01 | 0.804455 | 2.143086e-49 | 1.105434e-46 |
| MsG0180000729.01 | MsG0380015931.01 | 0.802633 | 5.113064e-49 | 2.517136e-46 |
| MsG0180000729.01 | MsG0380016427.01 | 0.804405 | 2.194257e-49 | 1.130381e-46 |
| MsG0180000729.01 | MsG0380017203.01 | 0.807527 | 4.838721e-50 | 2.701367e-47 |
| MsG0180000729.01 | MsG0380017940.01 | 0.804327 | 2.277900e-49 | 1.171147e-46 |
| MsG0180000729.01 | MsG0480018998.01 | 0.829024 | 6.486039e-55 | 6.557432e-52 |
| MsG0180000729.01 | MsG0480019056.01 | 0.845745 | 3.353026e-59 | 5.643952e-56 |
| MsG0180000729.01 | MsG0480020445.01 | 0.816655 | 4.943541e-52 | 3.523901e-49 |
| MsG0180000729.01 | MsG0480021441.01 | 0.825181 | 5.391859e-54 | 4.879143e-51 |
| MsG0180000729.01 | MsG0480022301.01 | 0.833734 | 4.498740e-56 | 5.226763e-53 |
| MsG0180000729.01 | MsG0480022479.01 | 0.839554 | 1.477970e-57 | 2.048133e-54 |
| MsG0180000729.01 | MsG0480022480.01 | 0.820516 | 6.580711e-53 | 5.218015e-50 |
| MsG0180000729.01 | MsG0480022486.01 | 0.804499 | 2.098164e-49 | 1.083466e-46 |
| MsG0180000729.01 | MsG0480022520.01 | 0.806487 | 8.031571e-50 | 4.364805e-47 |
| MsG0180000729.01 | MsG0480022987.01 | 0.816746 | 4.717766e-52 | 3.371188e-49 |
| MsG0180000729.01 | MsG0480023318.01 | 0.805496 | 1.297816e-49 | 6.876297e-47 |
| MsG0180000729.01 | MsG0480023903.01 | 0.831931 | 1.261400e-55 | 1.389156e-52 |
| MsG0180000729.01 | MsG0580024035.01 | 0.800039 | 1.737141e-48 | 8.007062e-46 |
| MsG0180000729.01 | MsG0580024682.01 | 0.812084 | 5.064390e-51 | 3.189424e-48 |
| MsG0180000729.01 | MsG0580027129.01 | 0.827721 | 1.337824e-54 | 1.302201e-51 |
| MsG0180000729.01 | MsG0580027847.01 | 0.814039 | 1.887100e-51 | 1.252625e-48 |
| MsG0180000729.01 | MsG0580029798.01 | 0.809062 | 2.277713e-50 | 1.323954e-47 |
| MsG0180000729.01 | MsG0580029960.01 | 0.830829 | 2.355735e-55 | 2.510753e-52 |
| MsG0180000729.01 | MsG0680032017.01 | 0.829807 | 4.186687e-55 | 4.332127e-52 |
| MsG0180000729.01 | MsG0680035842.01 | 0.805246 | 1.464201e-49 | 7.708088e-47 |
| MsG0180000729.01 | MsG0780036852.01 | 0.829011 | 6.535503e-55 | 6.604946e-52 |
| MsG0180000729.01 | MsG0780037109.01 | 0.807117 | 5.911395e-50 | 3.265098e-47 |
| MsG0180000729.01 | MsG0780038857.01 | 0.845091 | 5.041524e-59 | 8.308888e-56 |
| MsG0180000729.01 | MsG0780039430.01 | 0.804662 | 1.939904e-49 | 1.006017e-46 |
| MsG0180000729.01 | MsG0780040144.01 | 0.808425 | 3.116670e-50 | 1.781475e-47 |
| MsG0180000729.01 | MsG0780040442.01 | 0.812813 | 3.510586e-51 | 2.254025e-48 |
| MsG0180000729.01 | MsG0780040488.01 | 0.808229 | 3.431445e-50 | 1.951324e-47 |
| MsG0180000729.01 | MsG0880042843.01 | 0.813920 | 2.005037e-51 | 1.326556e-48 |
| MsG0180000729.01 | MsG0880042967.01 | 0.852267 | 5.164084e-61 | 1.073269e-57 |
| MsG0180000729.01 | MsG0880043262.01 | 0.844409 | 7.696154e-59 | 1.241292e-55 |
| MsG0180000729.01 | MsG0880043537.01 | 0.809394 | 1.934202e-50 | 1.134300e-47 |
| MsG0180000729.01 | MsG0880043921.01 | 0.859146 | 5.058891e-63 | 1.322627e-59 |
| MsG0180000729.01 | MsG0880045099.01 | 0.804441 | 2.157025e-49 | 1.112230e-46 |
| MsG0180000729.01 | MsG0880046467.01 | 0.842735 | 2.156342e-58 | 3.299580e-55 |
| MsG0180000729.01 | MsG0880046586.01 | 0.813749 | 2.186231e-51 | 1.439775e-48 |
| MsG0180000729.01 | MsG0880046615.01 | 0.808564 | 2.911542e-50 | 1.670194e-47 |
| MsG0180000729.01 | MsG0880046642.01 | 0.820248 | 7.584689e-53 | 5.969769e-50 |
| MsG0180000729.01 | MsG0880046669.01 | 0.821602 | 3.700355e-53 | 3.024190e-50 |
| MsG0180000729.01 | MsG0880046753.01 | 0.833056 | 6.638763e-56 | 7.558986e-53 |
| MsG0180000729.01 | MsG0880046779.01 | 0.813986 | 1.938554e-51 | 1.284853e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000729.01.T01 | MTR_1g009660 | 85.685 | 489 | 58 | 3 | 1 | 484 | 1 | 482 | 0.0 | 655 |
| MsG0180000729.01.T01 | MTR_3g108830 | 74.468 | 47 | 11 | 1 | 439 | 484 | 446 | 492 | 8.74e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 84 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATGATCTTCTTCTTAA+TGG | 0.069682 | 1:-10349785 | None:intergenic |
| CTTAATGGAGAAGGCTTAAT+TGG | 0.190799 | 1:-10349770 | None:intergenic |
| CAACAACAATTAGCAGTAAA+AGG | 0.190834 | 1:+10350859 | MsG0180000729.01.T01:CDS |
| CTTGGTGTCTTATTTGAAAT+AGG | 0.246453 | 1:-10349968 | None:intergenic |
| AAATAAGCTAGTTGGGAAAA+AGG | 0.276009 | 1:+10350000 | MsG0180000729.01.T01:CDS |
| GTTGTGGGCTTTAGATAGTT+TGG | 0.276367 | 1:-10349719 | None:intergenic |
| ATCATTAGCTACCTTCTTAG+AGG | 0.287986 | 1:-10350071 | None:intergenic |
| TGAAGAAGTTGAAGAAGTTA+AGG | 0.292533 | 1:+10350816 | MsG0180000729.01.T01:CDS |
| GTCACAGCTTTGATCTTTGC+AGG | 0.298945 | 1:-10350109 | None:intergenic |
| ACTGCTAATTGTTGTTGCTT+TGG | 0.334106 | 1:-10350853 | None:intergenic |
| TTGTGGGCTTTAGATAGTTT+GGG | 0.351132 | 1:-10349718 | None:intergenic |
| GGAAACTGCAAGCAAGCTAT+TGG | 0.368236 | 1:+10350921 | MsG0180000729.01.T01:CDS |
| GAAACTGCAAGCAAGCTATT+GGG | 0.374785 | 1:+10350922 | MsG0180000729.01.T01:CDS |
| GAAAAGAAAGAAAATGAAAG+TGG | 0.386555 | 1:+10350550 | MsG0180000729.01.T01:CDS |
| GAAAAGGAAGAAAATGAAAG+TGG | 0.386555 | 1:+10350628 | MsG0180000729.01.T01:CDS |
| GAAAAGGAAGAAAATGAAAG+TGG | 0.386555 | 1:+10350706 | MsG0180000729.01.T01:CDS |
| CAAAAGGAAGAAAATGAAAG+TGG | 0.392066 | 1:+10350472 | MsG0180000729.01.T01:CDS |
| TCCATTAAGAAGAAGATCAT+TGG | 0.392644 | 1:+10349784 | MsG0180000729.01.T01:CDS |
| AGAACAAGGAGGGGAAGAGA+AGG | 0.423533 | 1:+10350771 | MsG0180000729.01.T01:CDS |
| AACAAGGTTCTTGCATTGGC+TGG | 0.424301 | 1:+10350952 | MsG0180000729.01.T01:CDS |
| AAAGAAAGTAGTACACTTGT+TGG | 0.425952 | 1:+10349572 | MsG0180000729.01.T01:CDS |
| GAGAAGGAAGCTGTTGAAGG+AGG | 0.427486 | 1:+10350787 | MsG0180000729.01.T01:CDS |
| GATTTATCTCAAGTATCTAA+TGG | 0.432672 | 1:+10350889 | MsG0180000729.01.T01:CDS |
| CGAAGTTTCTGTGATTGAAA+AGG | 0.434643 | 1:+10350612 | MsG0180000729.01.T01:CDS |
| AGAAGGAAGCTGTTGAAGGA+GGG | 0.434821 | 1:+10350788 | MsG0180000729.01.T01:CDS |
| CGAAGTTTCTGTGATTCAAA+AGG | 0.437082 | 1:+10350456 | MsG0180000729.01.T01:CDS |
| CTCTAGGGCCAGGGGAAACA+AGG | 0.437459 | 1:-10349880 | None:intergenic |
| AGACCAAGAAGTAGAAGAAA+AGG | 0.438530 | 1:+10350339 | MsG0180000729.01.T01:CDS |
| AGCTGTTTGAAACTTGTTGT+GGG | 0.449340 | 1:-10349734 | None:intergenic |
| GACAAAAGAAGTTGATCGTT+CGG | 0.453551 | 1:+10350423 | MsG0180000729.01.T01:CDS |
| GTTGAAATGACTTTCTCATA+AGG | 0.454229 | 1:-10350310 | None:intergenic |
| CTCTGAATTATTACATGAGC+AGG | 0.456418 | 1:+10350255 | MsG0180000729.01.T01:CDS |
| GAGGTAGGTGTTGCTGTGGA+TGG | 0.467421 | 1:-10349650 | None:intergenic |
| GCAGATCTTTCTCTAGGGCC+AGG | 0.468580 | 1:-10349890 | None:intergenic |
| GAAGAGAAGGAAGCTGTTGA+AGG | 0.470608 | 1:+10350784 | MsG0180000729.01.T01:CDS |
| TGCAACTTCGCTTTCAACCT+CGG | 0.472275 | 1:-10350677 | None:intergenic |
| GAAAGTGGGAATGTAATAGA+AGG | 0.475945 | 1:+10350721 | MsG0180000729.01.T01:CDS |
| GAAGGAAGCTGTTGAAGGAG+GGG | 0.483098 | 1:+10350789 | MsG0180000729.01.T01:CDS |
| CACAAAGCCCTTGTTTCCCC+TGG | 0.483515 | 1:+10349872 | MsG0180000729.01.T01:CDS |
| AACAACAATTAGCAGTAAAA+GGG | 0.485734 | 1:+10350860 | MsG0180000729.01.T01:CDS |
| AAGCTGTTTGAAACTTGTTG+TGG | 0.491867 | 1:-10349735 | None:intergenic |
| CTCTTGTTTGTTGTGGAGGT+AGG | 0.492283 | 1:-10349665 | None:intergenic |
| AAGAAAGTAGTACACTTGTT+GGG | 0.496347 | 1:+10349573 | MsG0180000729.01.T01:CDS |
| AGTGAAGCAGATCTTTCTCT+AGG | 0.499485 | 1:-10349896 | None:intergenic |
| CGAAGTTGCAGTGAATGAAA+AGG | 0.503697 | 1:+10350690 | MsG0180000729.01.T01:CDS |
| AGAAGTTGAAGTGATAAAAG+TGG | 0.511607 | 1:+10350189 | MsG0180000729.01.T01:CDS |
| TGAAACTGAGGATGTTAAAG+AGG | 0.512584 | 1:+10350156 | MsG0180000729.01.T01:CDS |
| GAAGAACAAGGTTCTTGCAT+TGG | 0.514933 | 1:+10350948 | MsG0180000729.01.T01:CDS |
| AATAATTCAGAGATGACATC+AGG | 0.518360 | 1:-10350244 | None:intergenic |
| AGTATCTAATGGTATGATTG+AGG | 0.519661 | 1:+10350900 | MsG0180000729.01.T01:CDS |
| AGAAACTTCGCTTTCAACCT+CGG | 0.521170 | 1:-10350599 | None:intergenic |
| GATCTTCTTCTTAATGGAGA+AGG | 0.522805 | 1:-10349779 | None:intergenic |
| GTTAAGTTTGAAGATGAAAG+TGG | 0.525002 | 1:-10349812 | None:intergenic |
| GGAACATGTTCAAATTCTTG+AGG | 0.539098 | 1:+10350276 | MsG0180000729.01.T01:CDS |
| TGAGTTACTCTTGTTTGTTG+TGG | 0.542300 | 1:-10349672 | None:intergenic |
| CTTCTATCACAACAACCAAA+AGG | 0.542669 | 1:+10349618 | MsG0180000729.01.T01:CDS |
| AGAAAAGGAGTCACAAGAAG+AGG | 0.549465 | 1:+10350354 | MsG0180000729.01.T01:CDS |
| GTTACTCTTGTTTGTTGTGG+AGG | 0.550912 | 1:-10349669 | None:intergenic |
| ACAATGAAGAAGAACAAGGA+GGG | 0.551323 | 1:+10350761 | MsG0180000729.01.T01:CDS |
| TACTTCTAAAACCTCTAAGA+AGG | 0.551648 | 1:+10350060 | MsG0180000729.01.T01:CDS |
| CAGATCTTTCTCTAGGGCCA+GGG | 0.557632 | 1:-10349889 | None:intergenic |
| AAAAGAAAGAAAATGAAAGT+GGG | 0.558618 | 1:+10350551 | MsG0180000729.01.T01:CDS |
| AAAAGGAAGAAAATGAAAGT+GGG | 0.558618 | 1:+10350629 | MsG0180000729.01.T01:CDS |
| AAAAGGAAGAAAATGAAAGT+GGG | 0.558618 | 1:+10350707 | MsG0180000729.01.T01:CDS |
| AAAAGGAAGAAAATGAAAGT+GGG | 0.561058 | 1:+10350473 | MsG0180000729.01.T01:CDS |
| TTTGTGTAGTCTTGAAAGAG+AGG | 0.569388 | 1:-10349855 | None:intergenic |
| TCACAGCTTTGATCTTTGCA+GGG | 0.579813 | 1:-10350108 | None:intergenic |
| TGTGGAGGTAGGTGTTGCTG+TGG | 0.589538 | 1:-10349654 | None:intergenic |
| CAATGAAGAAGAACAAGGAG+GGG | 0.590984 | 1:+10350762 | MsG0180000729.01.T01:CDS |
| GTGAAGCAGATCTTTCTCTA+GGG | 0.593867 | 1:-10349895 | None:intergenic |
| AAACTGCAAGCAAGCTATTG+GGG | 0.593923 | 1:+10350923 | MsG0180000729.01.T01:CDS |
| GTACACTTGTTGGGAATGAG+AGG | 0.595873 | 1:+10349582 | MsG0180000729.01.T01:CDS |
| TCTAGGGCCAGGGGAAACAA+GGG | 0.597582 | 1:-10349879 | None:intergenic |
| AGATCTTTCTCTAGGGCCAG+GGG | 0.629471 | 1:-10349888 | None:intergenic |
| GCTATTGGGGAGGAAGAACA+AGG | 0.635012 | 1:+10350936 | MsG0180000729.01.T01:CDS |
| AGAAGAAGTTGACCGTTCCG+AGG | 0.641677 | 1:+10350660 | MsG0180000729.01.T01:CDS |
| CTTCGCTTTCAACCTCGGAA+CGG | 0.645320 | 1:-10350672 | None:intergenic |
| AGAAGAAGCTGATCATTCTG+AGG | 0.655122 | 1:+10350504 | MsG0180000729.01.T01:CDS |
| AAAAGAAGTTGATCGTTCGG+AGG | 0.657420 | 1:+10350426 | MsG0180000729.01.T01:CDS |
| AGAAGAAGTTGATCATTCCG+AGG | 0.657420 | 1:+10350582 | MsG0180000729.01.T01:CDS |
| AACAATGAAGAAGAACAAGG+AGG | 0.675083 | 1:+10350760 | MsG0180000729.01.T01:CDS |
| CTGCAAGCAAGCTATTGGGG+AGG | 0.684251 | 1:+10350926 | MsG0180000729.01.T01:CDS |
| TGCATCAAGTGTTGAAACTG+AGG | 0.699754 | 1:+10350144 | MsG0180000729.01.T01:CDS |
| AACAACAATGAAGAAGAACA+AGG | 0.713438 | 1:+10350757 | MsG0180000729.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAGAAAATGAAAGT+GGG | + | Chr1:10350551-10350570 | MsG0180000729.01.T01:CDS | 20.0% |
| !!! | TATTTGAAATAGGTTTTGAA+GGG | - | Chr1:10349961-10349980 | None:intergenic | 20.0% |
| !!! | TTATTTGAAATAGGTTTTGA+AGG | - | Chr1:10349962-10349981 | None:intergenic | 20.0% |
| ! | AAAAGGAAGAAAATGAAAGT+GGG | + | Chr1:10350473-10350492 | MsG0180000729.01.T01:CDS | 25.0% |
| ! | AACAACAATTAGCAGTAAAA+GGG | + | Chr1:10350860-10350879 | MsG0180000729.01.T01:CDS | 25.0% |
| ! | ATGCAAAAAATAAGCTAGTT+GGG | + | Chr1:10349993-10350012 | MsG0180000729.01.T01:CDS | 25.0% |
| ! | GAAAAGAAAGAAAATGAAAG+TGG | + | Chr1:10350550-10350569 | MsG0180000729.01.T01:CDS | 25.0% |
| ! | GATTTATCTCAAGTATCTAA+TGG | + | Chr1:10350889-10350908 | MsG0180000729.01.T01:CDS | 25.0% |
| AAAGAAAGTAGTACACTTGT+TGG | + | Chr1:10349572-10349591 | MsG0180000729.01.T01:CDS | 30.0% | |
| AAATAAGCTAGTTGGGAAAA+AGG | + | Chr1:10350000-10350019 | MsG0180000729.01.T01:CDS | 30.0% | |
| AACAACAATGAAGAAGAACA+AGG | + | Chr1:10350757-10350776 | MsG0180000729.01.T01:CDS | 30.0% | |
| AAGAAAGTAGTACACTTGTT+GGG | + | Chr1:10349573-10349592 | MsG0180000729.01.T01:CDS | 30.0% | |
| AATAATTCAGAGATGACATC+AGG | - | Chr1:10350247-10350266 | None:intergenic | 30.0% | |
| AGAAGTTGAAGTGATAAAAG+TGG | + | Chr1:10350189-10350208 | MsG0180000729.01.T01:CDS | 30.0% | |
| AGTATCTAATGGTATGATTG+AGG | + | Chr1:10350900-10350919 | MsG0180000729.01.T01:CDS | 30.0% | |
| CAAAAGGAAGAAAATGAAAG+TGG | + | Chr1:10350472-10350491 | MsG0180000729.01.T01:CDS | 30.0% | |
| CAACAACAATTAGCAGTAAA+AGG | + | Chr1:10350859-10350878 | MsG0180000729.01.T01:CDS | 30.0% | |
| GAAAAGGAAGAAAATGAAAG+TGG | + | Chr1:10350628-10350647 | MsG0180000729.01.T01:CDS | 30.0% | |
| GATGCAAAAAATAAGCTAGT+TGG | + | Chr1:10349992-10350011 | MsG0180000729.01.T01:CDS | 30.0% | |
| GTTAAGTTTGAAGATGAAAG+TGG | - | Chr1:10349815-10349834 | None:intergenic | 30.0% | |
| GTTGAAATGACTTTCTCATA+AGG | - | Chr1:10350313-10350332 | None:intergenic | 30.0% | |
| TCCAATGATCTTCTTCTTAA+TGG | - | Chr1:10349788-10349807 | None:intergenic | 30.0% | |
| TCCATTAAGAAGAAGATCAT+TGG | + | Chr1:10349784-10349803 | MsG0180000729.01.T01:CDS | 30.0% | |
| TGAAGAAGTTGAAGAAGTTA+AGG | + | Chr1:10350816-10350835 | MsG0180000729.01.T01:CDS | 30.0% | |
| ! | CTTTTATCACTTCAACTTCT+TGG | - | Chr1:10350189-10350208 | None:intergenic | 30.0% |
| !! | CTTGGTGTCTTATTTGAAAT+AGG | - | Chr1:10349971-10349990 | None:intergenic | 30.0% |
| !! | TACTTCTAAAACCTCTAAGA+AGG | + | Chr1:10350060-10350079 | MsG0180000729.01.T01:CDS | 30.0% |
| !!! | AGCTTATTTTTTGCATCACT+TGG | - | Chr1:10349989-10350008 | None:intergenic | 30.0% |
| AACAATGAAGAAGAACAAGG+AGG | + | Chr1:10350760-10350779 | MsG0180000729.01.T01:CDS | 35.0% | |
| ACAATGAAGAAGAACAAGGA+GGG | + | Chr1:10350761-10350780 | MsG0180000729.01.T01:CDS | 35.0% | |
| AGACCAAGAAGTAGAAGAAA+AGG | + | Chr1:10350339-10350358 | MsG0180000729.01.T01:CDS | 35.0% | |
| ATCATTAGCTACCTTCTTAG+AGG | - | Chr1:10350074-10350093 | None:intergenic | 35.0% | |
| CGAAGTTTCTGTGATTCAAA+AGG | + | Chr1:10350456-10350475 | MsG0180000729.01.T01:CDS | 35.0% | |
| CGAAGTTTCTGTGATTGAAA+AGG | + | Chr1:10350612-10350631 | MsG0180000729.01.T01:CDS | 35.0% | |
| CTCTGAATTATTACATGAGC+AGG | + | Chr1:10350255-10350274 | MsG0180000729.01.T01:CDS | 35.0% | |
| CTTAATGGAGAAGGCTTAAT+TGG | - | Chr1:10349773-10349792 | None:intergenic | 35.0% | |
| CTTCTATCACAACAACCAAA+AGG | + | Chr1:10349618-10349637 | MsG0180000729.01.T01:CDS | 35.0% | |
| GAAAGTGGGAATGTAATAGA+AGG | + | Chr1:10350721-10350740 | MsG0180000729.01.T01:CDS | 35.0% | |
| GATCTTCTTCTTAATGGAGA+AGG | - | Chr1:10349782-10349801 | None:intergenic | 35.0% | |
| GGAACATGTTCAAATTCTTG+AGG | + | Chr1:10350276-10350295 | MsG0180000729.01.T01:CDS | 35.0% | |
| TGAAACTGAGGATGTTAAAG+AGG | + | Chr1:10350156-10350175 | MsG0180000729.01.T01:CDS | 35.0% | |
| ! | ACTCCTTTTCTTCTACTTCT+TGG | - | Chr1:10350345-10350364 | None:intergenic | 35.0% |
| ! | ACTGCTAATTGTTGTTGCTT+TGG | - | Chr1:10350856-10350875 | None:intergenic | 35.0% |
| ! | GACAAAAGAAGTTGATCGTT+CGG | + | Chr1:10350423-10350442 | MsG0180000729.01.T01:CDS | 35.0% |
| ! | TGAGTTACTCTTGTTTGTTG+TGG | - | Chr1:10349675-10349694 | None:intergenic | 35.0% |
| ! | TTTGTGTAGTCTTGAAAGAG+AGG | - | Chr1:10349858-10349877 | None:intergenic | 35.0% |
| !! | AAGCTGTTTGAAACTTGTTG+TGG | - | Chr1:10349738-10349757 | None:intergenic | 35.0% |
| !! | AGCTGTTTGAAACTTGTTGT+GGG | - | Chr1:10349737-10349756 | None:intergenic | 35.0% |
| !! | CTTTTGGTTGTTGTGATAGA+AGG | - | Chr1:10349620-10349639 | None:intergenic | 35.0% |
| !! | GGTACTTTTAACTGGAACAT+TGG | - | Chr1:10349936-10349955 | None:intergenic | 35.0% |
| !! | TTGTGGGCTTTAGATAGTTT+GGG | - | Chr1:10349721-10349740 | None:intergenic | 35.0% |
| !!! | TGAAATAGGTTTTGAAGGGT+TGG | - | Chr1:10349957-10349976 | None:intergenic | 35.0% |
| AAACTGCAAGCAAGCTATTG+GGG | + | Chr1:10350923-10350942 | MsG0180000729.01.T01:CDS | 40.0% | |
| AGAAAAGGAGTCACAAGAAG+AGG | + | Chr1:10350354-10350373 | MsG0180000729.01.T01:CDS | 40.0% | |
| AGAAACTTCGCTTTCAACCT+CGG | - | Chr1:10350446-10350465 | None:intergenic | 40.0% | |
| AGAAGAAGCTGATCATTCTG+AGG | + | Chr1:10350504-10350523 | MsG0180000729.01.T01:CDS | 40.0% | |
| AGTGAAGCAGATCTTTCTCT+AGG | - | Chr1:10349899-10349918 | None:intergenic | 40.0% | |
| CAATGAAGAAGAACAAGGAG+GGG | + | Chr1:10350762-10350781 | MsG0180000729.01.T01:CDS | 40.0% | |
| CGAAGTTGCAGTGAATGAAA+AGG | + | Chr1:10350690-10350709 | MsG0180000729.01.T01:CDS | 40.0% | |
| GAAACTGCAAGCAAGCTATT+GGG | + | Chr1:10350922-10350941 | MsG0180000729.01.T01:CDS | 40.0% | |
| GAAGAACAAGGTTCTTGCAT+TGG | + | Chr1:10350948-10350967 | MsG0180000729.01.T01:CDS | 40.0% | |
| GTGAAGCAGATCTTTCTCTA+GGG | - | Chr1:10349898-10349917 | None:intergenic | 40.0% | |
| ! | AAAAGAAGTTGATCGTTCGG+AGG | + | Chr1:10350426-10350445 | MsG0180000729.01.T01:CDS | 40.0% |
| ! | AGAAGAAGTTGATCATTCCG+AGG | + | Chr1:10350582-10350601 | MsG0180000729.01.T01:CDS | 40.0% |
| ! | GATGTTTTTCTCTGATGAGG+TGG | - | Chr1:10349699-10349718 | None:intergenic | 40.0% |
| ! | TCACAGCTTTGATCTTTGCA+GGG | - | Chr1:10350111-10350130 | None:intergenic | 40.0% |
| ! | TGGGATGTTTTTCTCTGATG+AGG | - | Chr1:10349702-10349721 | None:intergenic | 40.0% |
| !! | GTTACTCTTGTTTGTTGTGG+AGG | - | Chr1:10349672-10349691 | None:intergenic | 40.0% |
| !! | GTTGTGGGCTTTAGATAGTT+TGG | - | Chr1:10349722-10349741 | None:intergenic | 40.0% |
| !! | TGCATCAAGTGTTGAAACTG+AGG | + | Chr1:10350144-10350163 | MsG0180000729.01.T01:CDS | 40.0% |
| !!! | GAAGGGTTGGTACTTTTAAC+TGG | - | Chr1:10349944-10349963 | None:intergenic | 40.0% |
| AGAAGGAAGCTGTTGAAGGA+GGG | + | Chr1:10350788-10350807 | MsG0180000729.01.T01:CDS | 45.0% | |
| GAAGAGAAGGAAGCTGTTGA+AGG | + | Chr1:10350784-10350803 | MsG0180000729.01.T01:CDS | 45.0% | |
| GGAAACTGCAAGCAAGCTAT+TGG | + | Chr1:10350921-10350940 | MsG0180000729.01.T01:CDS | 45.0% | |
| TGCAACTTCGCTTTCAACCT+CGG | - | Chr1:10350680-10350699 | None:intergenic | 45.0% | |
| ! | AACAAGGTTCTTGCATTGGC+TGG | + | Chr1:10350952-10350971 | MsG0180000729.01.T01:CDS | 45.0% |
| ! | GTACACTTGTTGGGAATGAG+AGG | + | Chr1:10349582-10349601 | MsG0180000729.01.T01:CDS | 45.0% |
| ! | GTCACAGCTTTGATCTTTGC+AGG | - | Chr1:10350112-10350131 | None:intergenic | 45.0% |
| !! | CTCTTGTTTGTTGTGGAGGT+AGG | - | Chr1:10349668-10349687 | None:intergenic | 45.0% |
| !! | TGTTGCTGTGGATGGTTTTG+TGG | - | Chr1:10349645-10349664 | None:intergenic | 45.0% |
| !!! | GGATGGTTTTGTGGTCCTTT+TGG | - | Chr1:10349636-10349655 | None:intergenic | 45.0% |
| AGAACAAGGAGGGGAAGAGA+AGG | + | Chr1:10350771-10350790 | MsG0180000729.01.T01:CDS | 50.0% | |
| AGAAGAAGTTGACCGTTCCG+AGG | + | Chr1:10350660-10350679 | MsG0180000729.01.T01:CDS | 50.0% | |
| CTTCGCTTTCAACCTCGGAA+CGG | - | Chr1:10350597-10350616 | None:intergenic | 50.0% | |
| GAAGGAAGCTGTTGAAGGAG+GGG | + | Chr1:10350789-10350808 | MsG0180000729.01.T01:CDS | 50.0% | |
| GAGAAGGAAGCTGTTGAAGG+AGG | + | Chr1:10350787-10350806 | MsG0180000729.01.T01:CDS | 50.0% | |
| GCTATTGGGGAGGAAGAACA+AGG | + | Chr1:10350936-10350955 | MsG0180000729.01.T01:CDS | 50.0% | |
| !! | AGATCTTTCTCTAGGGCCAG+GGG | - | Chr1:10349891-10349910 | None:intergenic | 50.0% |
| !! | CAGATCTTTCTCTAGGGCCA+GGG | - | Chr1:10349892-10349911 | None:intergenic | 50.0% |
| CTGCAAGCAAGCTATTGGGG+AGG | + | Chr1:10350926-10350945 | MsG0180000729.01.T01:CDS | 55.0% | |
| ! | CACAAAGCCCTTGTTTCCCC+TGG | + | Chr1:10349872-10349891 | MsG0180000729.01.T01:CDS | 55.0% |
| ! | TCTAGGGCCAGGGGAAACAA+GGG | - | Chr1:10349882-10349901 | None:intergenic | 55.0% |
| !! | GAGGTAGGTGTTGCTGTGGA+TGG | - | Chr1:10349653-10349672 | None:intergenic | 55.0% |
| !! | GCAGATCTTTCTCTAGGGCC+AGG | - | Chr1:10349893-10349912 | None:intergenic | 55.0% |
| !! | TGTGGAGGTAGGTGTTGCTG+TGG | - | Chr1:10349657-10349676 | None:intergenic | 55.0% |
| !! | CTCTAGGGCCAGGGGAAACA+AGG | - | Chr1:10349883-10349902 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 10349557 | 10351011 | 10349557 | ID=MsG0180000729.01;Name=MsG0180000729.01 |
| Chr1 | mRNA | 10349557 | 10351011 | 10349557 | ID=MsG0180000729.01.T01;Parent=MsG0180000729.01;Name=MsG0180000729.01.T01;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|484 |
| Chr1 | exon | 10349557 | 10351011 | 10349557 | ID=MsG0180000729.01.T01:exon:1369;Parent=MsG0180000729.01.T01 |
| Chr1 | CDS | 10349557 | 10351011 | 10349557 | ID=MsG0180000729.01.T01:cds;Parent=MsG0180000729.01.T01 |
| Gene Sequence |
| Protein sequence |
