Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016427.01.T03 | KEH35380.1 | 82.09 | 134 | 14 | 2 | 1 | 132 | 77 | 202 | 2.17E-45 | 160 |
| MsG0380016427.01.T01 | XP_024635044.1 | 86.567 | 268 | 27 | 5 | 1 | 263 | 31 | 294 | 1.99E-109 | 328 |
| MsG0380016427.01.T02 | XP_024635044.1 | 86.909 | 275 | 22 | 4 | 1 | 272 | 31 | 294 | 5.92E-111 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016427.01.T01 | A0A396IUX8 | 86.567 | 268 | 27 | 5 | 1 | 263 | 31 | 294 | 9.50e-110 | 328 |
| MsG0380016427.01.T02 | A0A396IUX8 | 86.909 | 275 | 22 | 4 | 1 | 272 | 31 | 294 | 2.83e-111 | 332 |
| MsG0380016427.01.T03 | A0A072VB60 | 82.090 | 134 | 14 | 2 | 1 | 132 | 77 | 202 | 1.03e-45 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048035.01 | MsG0380016427.01 | 0.814388 | 1.580000e-51 | 1.058817e-48 |
| MsG0180000585.01 | MsG0380016427.01 | 0.814497 | 1.494764e-51 | 1.004638e-48 |
| MsG0180000729.01 | MsG0380016427.01 | 0.804405 | 2.194257e-49 | 1.130381e-46 |
| MsG0180002912.01 | MsG0380016427.01 | 0.826670 | 2.388515e-54 | 2.254884e-51 |
| MsG0180002989.01 | MsG0380016427.01 | 0.814958 | 1.181787e-51 | 8.041535e-49 |
| MsG0180003948.01 | MsG0380016427.01 | 0.824229 | 9.037800e-54 | 7.957748e-51 |
| MsG0180004752.01 | MsG0380016427.01 | 0.820940 | 5.259494e-53 | 4.220196e-50 |
| MsG0180005172.01 | MsG0380016427.01 | 0.832524 | 9.002571e-56 | 1.008770e-52 |
| MsG0180005813.01 | MsG0380016427.01 | 0.804398 | 2.202379e-49 | 1.134345e-46 |
| MsG0180006047.01 | MsG0380016427.01 | 0.854566 | 1.130329e-61 | 2.535089e-58 |
| MsG0280010614.01 | MsG0380016427.01 | 0.830160 | 3.433499e-55 | 3.588589e-52 |
| MsG0280011053.01 | MsG0380016427.01 | 0.810021 | 1.418144e-50 | 8.455819e-48 |
| MsG0380012008.01 | MsG0380016427.01 | 0.802030 | 6.807875e-49 | 3.300271e-46 |
| MsG0380012033.01 | MsG0380016427.01 | 0.813571 | 2.393129e-51 | 1.568442e-48 |
| MsG0380012124.01 | MsG0380016427.01 | 0.809134 | 2.198119e-50 | 1.280223e-47 |
| MsG0380015931.01 | MsG0380016427.01 | 0.802209 | 6.252251e-49 | 3.044793e-46 |
| MsG0380016427.01 | MsG0380017101.01 | 0.808876 | 2.496534e-50 | 1.443891e-47 |
| MsG0380016427.01 | MsG0380017158.01 | 0.803401 | 3.547876e-49 | 1.781243e-46 |
| MsG0380016427.01 | MsG0380017714.01 | 0.816707 | 4.813537e-52 | 3.435842e-49 |
| MsG0380016427.01 | MsG0380017715.01 | 0.802963 | 4.371950e-49 | 2.170387e-46 |
| MsG0380016427.01 | MsG0380017940.01 | 0.814395 | 1.574905e-51 | 1.055574e-48 |
| MsG0380016427.01 | MsG0480018160.01 | 0.802654 | 5.062998e-49 | 2.493720e-46 |
| MsG0380016427.01 | MsG0480018998.01 | 0.829408 | 5.234406e-55 | 5.353010e-52 |
| MsG0380016427.01 | MsG0480019880.01 | 0.805243 | 1.466843e-49 | 7.721375e-47 |
| MsG0380016427.01 | MsG0480020444.01 | 0.851856 | 6.758537e-61 | 1.386128e-57 |
| MsG0380016427.01 | MsG0480020445.01 | 0.834975 | 2.196054e-56 | 2.648538e-53 |
| MsG0380016427.01 | MsG0480020554.01 | 0.826635 | 2.434252e-54 | 2.295735e-51 |
| MsG0380016427.01 | MsG0480021642.01 | 0.841269 | 5.264408e-58 | 7.694269e-55 |
| MsG0380016427.01 | MsG0480022274.01 | 0.808791 | 2.603775e-50 | 1.502513e-47 |
| MsG0380016427.01 | MsG0480022301.01 | 0.825505 | 4.518592e-54 | 4.126380e-51 |
| MsG0380016427.01 | MsG0480022479.01 | 0.846768 | 1.765100e-59 | 3.070838e-56 |
| MsG0380016427.01 | MsG0480022480.01 | 0.823616 | 1.258728e-53 | 1.089287e-50 |
| MsG0380016427.01 | MsG0480022486.01 | 0.826154 | 3.170028e-54 | 2.948934e-51 |
| MsG0380016427.01 | MsG0480022530.01 | 0.803560 | 3.288996e-49 | 1.658085e-46 |
| MsG0380016427.01 | MsG0480023224.01 | 0.804074 | 2.572162e-49 | 1.313929e-46 |
| MsG0380016427.01 | MsG0480023318.01 | 0.856701 | 2.693054e-62 | 6.482655e-59 |
| MsG0380016427.01 | MsG0480023947.01 | 0.821401 | 4.117891e-53 | 3.346641e-50 |
| MsG0380016427.01 | MsG0580024073.01 | 0.801998 | 6.909289e-49 | 3.346767e-46 |
| MsG0380016427.01 | MsG0580024205.01 | 0.810676 | 1.023736e-50 | 6.210490e-48 |
| MsG0380016427.01 | MsG0580024407.01 | 0.815422 | 9.320585e-52 | 6.423290e-49 |
| MsG0380016427.01 | MsG0580024467.01 | 0.833374 | 5.534124e-56 | 6.361234e-53 |
| MsG0380016427.01 | MsG0580027129.01 | 0.819348 | 1.217348e-52 | 9.343463e-50 |
| MsG0380016427.01 | MsG0580027345.01 | 0.814301 | 1.652045e-51 | 1.104457e-48 |
| MsG0380016427.01 | MsG0580027847.01 | 0.830670 | 2.576853e-55 | 2.733580e-52 |
| MsG0380016427.01 | MsG0580029906.01 | 0.810959 | 8.894576e-51 | 5.437124e-48 |
| MsG0380016427.01 | MsG0580029930.01 | 0.801112 | 1.050030e-48 | 4.973614e-46 |
| MsG0380016427.01 | MsG0680035807.01 | 0.800210 | 1.603653e-48 | 7.423942e-46 |
| MsG0380016427.01 | MsG0780037109.01 | 0.808399 | 3.157391e-50 | 1.803514e-47 |
| MsG0380016427.01 | MsG0780037515.01 | 0.804998 | 1.650165e-49 | 8.632100e-47 |
| MsG0380016427.01 | MsG0780037599.01 | 0.829513 | 4.936973e-55 | 5.063790e-52 |
| MsG0380016427.01 | MsG0780038444.01 | 0.811856 | 5.680024e-51 | 3.554927e-48 |
| MsG0380016427.01 | MsG0780039249.01 | 0.817438 | 3.298170e-52 | 2.401942e-49 |
| MsG0380016427.01 | MsG0780039430.01 | 0.800162 | 1.640017e-48 | 7.582776e-46 |
| MsG0380016427.01 | MsG0780039450.01 | 0.826356 | 2.838129e-54 | 2.655485e-51 |
| MsG0380016427.01 | MsG0780040144.01 | 0.800291 | 1.544123e-48 | 7.163236e-46 |
| MsG0380016427.01 | MsG0780040442.01 | 0.820391 | 7.032983e-53 | 5.557924e-50 |
| MsG0380016427.01 | MsG0780041589.01 | 0.806471 | 8.094010e-50 | 4.397001e-47 |
| MsG0380016427.01 | MsG0880041985.01 | 0.800126 | 1.668298e-48 | 7.706832e-46 |
| MsG0380016427.01 | MsG0880042368.01 | 0.801054 | 1.078888e-48 | 5.103052e-46 |
| MsG0380016427.01 | MsG0880042744.01 | 0.832786 | 7.750543e-56 | 8.753055e-53 |
| MsG0380016427.01 | MsG0880042843.01 | 0.842201 | 2.987790e-58 | 4.496272e-55 |
| MsG0380016427.01 | MsG0880042967.01 | 0.836240 | 1.050870e-56 | 1.316684e-53 |
| MsG0380016427.01 | MsG0880043262.01 | 0.865634 | 5.120941e-65 | 1.678126e-61 |
| MsG0380016427.01 | MsG0880043745.01 | 0.844916 | 5.620323e-59 | 9.211529e-56 |
| MsG0380016427.01 | MsG0880043921.01 | 0.819562 | 1.088370e-52 | 8.404362e-50 |
| MsG0380016427.01 | MsG0880045099.01 | 0.808906 | 2.459628e-50 | 1.423694e-47 |
| MsG0380016427.01 | MsG0880045256.01 | 0.830876 | 2.294380e-55 | 2.448654e-52 |
| MsG0380016427.01 | MsG0880045861.01 | 0.811208 | 7.851962e-51 | 4.831130e-48 |
| MsG0380016427.01 | MsG0880046226.01 | 0.803609 | 3.212624e-49 | 1.621554e-46 |
| MsG0380016427.01 | MsG0880046417.01 | 0.810908 | 9.120882e-51 | 5.567661e-48 |
| MsG0380016427.01 | MsG0880046467.01 | 0.821714 | 3.485713e-53 | 2.857984e-50 |
| MsG0380016427.01 | MsG0880046586.01 | 0.823661 | 1.228332e-53 | 1.064409e-50 |
| MsG0380016427.01 | MsG0880046615.01 | 0.827560 | 1.462485e-54 | 1.416815e-51 |
| MsG0380016427.01 | MsG0880046642.01 | 0.856866 | 2.407330e-62 | 5.826867e-59 |
| MsG0380016427.01 | MsG0880046669.01 | 0.819137 | 1.359954e-52 | 1.037764e-49 |
| MsG0380016427.01 | MsG0880046753.01 | 0.857627 | 1.434517e-62 | 3.563465e-59 |
| MsG0380016427.01 | MsG0880046779.01 | 0.817530 | 3.143634e-52 | 2.295120e-49 |
| MsG0380016427.01 | MsG0880047143.01 | 0.819818 | 9.509829e-53 | 7.396355e-50 |
| MsG0280006586.01 | MsG0380016427.01 | 0.833760 | 4.432070e-56 | 5.153628e-53 |
| MsG0280007272.01 | MsG0380016427.01 | 0.816711 | 4.802606e-52 | 3.428558e-49 |
| MsG0280008856.01 | MsG0380016427.01 | 0.841938 | 3.507438e-58 | 5.234745e-55 |
| MsG0280010459.01 | MsG0380016427.01 | 0.844929 | 5.576502e-59 | 9.143477e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016427.01.T03 | MTR_3g088815 | 82.090 | 134 | 14 | 2 | 1 | 132 | 77 | 202 | 2.62e-49 | 160 |
| MsG0380016427.01.T03 | MTR_1g029550 | 41.104 | 163 | 61 | 7 | 1 | 149 | 84 | 225 | 5.92e-16 | 73.9 |
| MsG0380016427.01.T01 | MTR_3g088815 | 88.293 | 205 | 16 | 4 | 1 | 200 | 1 | 202 | 3.12e-105 | 305 |
| MsG0380016427.01.T01 | MTR_1g029550 | 41.155 | 277 | 127 | 10 | 1 | 259 | 1 | 259 | 3.41e-36 | 129 |
| MsG0380016427.01.T02 | MTR_3g088815 | 86.385 | 213 | 15 | 4 | 1 | 210 | 1 | 202 | 6.64e-105 | 305 |
| MsG0380016427.01.T02 | MTR_1g029550 | 39.100 | 289 | 125 | 11 | 1 | 268 | 1 | 259 | 2.13e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016427.01.T03 | AT1G21390 | 42.424 | 132 | 58 | 7 | 1 | 125 | 72 | 192 | 2.31e-11 | 61.2 |
| MsG0380016427.01.T03 | AT1G76980 | 42.754 | 138 | 50 | 7 | 1 | 124 | 70 | 192 | 2.50e-11 | 61.2 |
| MsG0380016427.01.T03 | AT1G76980 | 42.754 | 138 | 50 | 7 | 1 | 124 | 70 | 192 | 5.98e-11 | 60.1 |
| MsG0380016427.01.T01 | AT1G21390 | 45.395 | 152 | 55 | 8 | 59 | 193 | 52 | 192 | 1.88e-19 | 85.1 |
| MsG0380016427.01.T01 | AT1G76980 | 40.351 | 171 | 63 | 6 | 50 | 192 | 33 | 192 | 5.99e-18 | 81.3 |
| MsG0380016427.01.T01 | AT1G76980 | 40.351 | 171 | 63 | 6 | 50 | 192 | 33 | 192 | 1.18e-17 | 80.5 |
| MsG0380016427.01.T02 | AT1G76980 | 41.714 | 175 | 65 | 8 | 50 | 202 | 33 | 192 | 5.24e-20 | 87.0 |
| MsG0380016427.01.T02 | AT1G21390 | 44.737 | 152 | 66 | 6 | 59 | 203 | 52 | 192 | 6.64e-20 | 86.7 |
| MsG0380016427.01.T02 | AT1G76980 | 41.714 | 175 | 65 | 8 | 50 | 202 | 33 | 192 | 1.35e-19 | 85.9 |
Find 56 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTGATGGACCAGTAAA+AGG | 0.323657 | 3:-83275082 | MsG0380016427.01.T02:CDS |
| ATGGCCTCTGTTCTTGAAAC+AGG | 0.336109 | 3:+83275445 | None:intergenic |
| TACAAATCAAAAGAATTCTT+AGG | 0.338959 | 3:+83275604 | None:intergenic |
| GAAAGTTCATAGTTTGATTC+GGG | 0.347032 | 3:+83275379 | None:intergenic |
| CCAGAGATTATTAGAATTTG+TGG | 0.349920 | 3:+83275552 | None:intergenic |
| ATGTTAATTAATTTGAAGTT+GGG | 0.362314 | 3:+83274872 | None:intergenic |
| TATGTTAATTAATTTGAAGT+TGG | 0.363970 | 3:+83274871 | None:intergenic |
| TGAAAGTTCATAGTTTGATT+CGG | 0.368860 | 3:+83275378 | None:intergenic |
| GCAGAAGGAGGAGGAGGAGA+AGG | 0.389816 | 3:-83275302 | MsG0380016427.01.T02:CDS |
| GCCTTCAACACAGCCTCAAT+TGG | 0.391567 | 3:-83275530 | MsG0380016427.01.T02:CDS |
| GGCTTCCCATGTTTCATGTC+TGG | 0.393616 | 3:+83275573 | None:intergenic |
| AAACTATGAACTTTCATTGA+AGG | 0.394782 | 3:-83275371 | MsG0380016427.01.T02:CDS |
| ACTGGTCCATCAGAAATTGA+TGG | 0.402064 | 3:+83275088 | None:intergenic |
| AGTAAAAGGTGCTGCTGATA+AGG | 0.408560 | 3:-83275068 | MsG0380016427.01.T02:CDS |
| AAGAATTCTAGTGTCTATAA+TGG | 0.423589 | 3:-83275268 | MsG0380016427.01.T02:CDS |
| GACTAAGAAGCAATAGCATC+AGG | 0.448427 | 3:-83274904 | MsG0380016427.01.T02:intron |
| ATCACGATGAACAACCTAGA+TGG | 0.455248 | 3:-83275501 | MsG0380016427.01.T02:CDS |
| CCACAAATTCTAATAATCTC+TGG | 0.468437 | 3:-83275552 | MsG0380016427.01.T02:CDS |
| GGAGGAGGAGGAGAAGGAGA+AGG | 0.482742 | 3:-83275296 | MsG0380016427.01.T02:CDS |
| AAGAACTCATGGAAATGGTT+CGG | 0.483414 | 3:-83275408 | MsG0380016427.01.T02:CDS |
| AGAAAATACAGAGGAGCAGA+AGG | 0.490882 | 3:-83275317 | MsG0380016427.01.T02:CDS |
| CAAGAAGATTGGTGATAAGA+AGG | 0.505918 | 3:-83275242 | MsG0380016427.01.T02:CDS |
| AGAGGAGCAGAAGGAGGAGG+AGG | 0.512087 | 3:-83275308 | MsG0380016427.01.T02:CDS |
| CCATCAGAAATTGATGGTCT+TGG | 0.516641 | 3:+83275094 | None:intergenic |
| TCCAATTGAGGCTGTGTTGA+AGG | 0.516902 | 3:+83275529 | None:intergenic |
| GGTGAGTTCACACTCCATCT+AGG | 0.517049 | 3:+83275487 | None:intergenic |
| ATCTTGTGGAACACCACCAC+AGG | 0.517846 | 3:-83275348 | MsG0380016427.01.T02:CDS |
| ACTTTCATTGAAGGATCTTG+TGG | 0.526030 | 3:-83275362 | MsG0380016427.01.T02:CDS |
| TACAGAGGAGCAGAAGGAGG+AGG | 0.532433 | 3:-83275311 | MsG0380016427.01.T02:CDS |
| AATCAAAAGAATTCTTAGGT+TGG | 0.534469 | 3:+83275608 | None:intergenic |
| TATAATGGTGGCAAGAAGAT+TGG | 0.534880 | 3:-83275253 | MsG0380016427.01.T02:CDS |
| CCAAGACCATCAATTTCTGA+TGG | 0.535937 | 3:-83275094 | MsG0380016427.01.T02:CDS |
| CAAAAGAATTCTTAGGTTGG+TGG | 0.537203 | 3:+83275611 | None:intergenic |
| CGAGGTTTCTACCTGAAAGT+GGG | 0.539143 | 3:-83275181 | MsG0380016427.01.T02:CDS |
| TTTCTTCTCTGGTCCTGTGG+TGG | 0.548885 | 3:+83275335 | None:intergenic |
| GGGAAAATTGATCGTGATCG+AGG | 0.558249 | 3:-83275199 | MsG0380016427.01.T02:CDS |
| CTGTTCTTGAAACAGGGGAA+AGG | 0.560820 | 3:+83275452 | None:intergenic |
| TCGAGGTTTCTACCTGAAAG+TGG | 0.562734 | 3:-83275182 | MsG0380016427.01.T02:CDS |
| AGAAAGGTGGAGGTATATGC+TGG | 0.563507 | 3:-83274450 | MsG0380016427.01.T02:CDS |
| TCGTGATACATGTCCAATTG+AGG | 0.569340 | 3:+83275517 | None:intergenic |
| GCATCGAGCAGCAACAGTAA+TGG | 0.577671 | 3:-83274986 | MsG0380016427.01.T02:CDS |
| TCACTCTCTTTATAAACAGA+AGG | 0.579013 | 3:+83275022 | None:intergenic |
| TGCAGGCGTGAGAAAGGTGG+AGG | 0.582682 | 3:-83274460 | MsG0380016427.01.T02:intron |
| ATGAAATGCAGGCGTGAGAA+AGG | 0.589952 | 3:-83274466 | MsG0380016427.01.T02:intron |
| AAATGCAGGCGTGAGAAAGG+TGG | 0.592081 | 3:-83274463 | MsG0380016427.01.T02:intron |
| TGGCCTCTGTTCTTGAAACA+GGG | 0.597218 | 3:+83275446 | None:intergenic |
| ATGAAACCAGACATGAAACA+TGG | 0.602607 | 3:-83275579 | MsG0380016427.01.T02:CDS |
| AGAACAGAGGCCATAGTGAG+AGG | 0.606015 | 3:-83275436 | MsG0380016427.01.T02:CDS |
| AATTCTAGTGTCTATAATGG+TGG | 0.616757 | 3:-83275265 | MsG0380016427.01.T02:CDS |
| TTCCCCTGTTTCAAGAACAG+AGG | 0.619257 | 3:-83275449 | MsG0380016427.01.T02:CDS |
| GGGGAAAGGCTTCTGTAATG+TGG | 0.623224 | 3:+83275466 | None:intergenic |
| AAATACAGAGGAGCAGAAGG+AGG | 0.627616 | 3:-83275314 | MsG0380016427.01.T02:CDS |
| GGCCTCTGTTCTTGAAACAG+GGG | 0.643547 | 3:+83275447 | None:intergenic |
| GAGGTTTCTACCTGAAAGTG+GGG | 0.662564 | 3:-83275180 | MsG0380016427.01.T02:CDS |
| TGAAACCAGACATGAAACAT+GGG | 0.668487 | 3:-83275578 | MsG0380016427.01.T02:CDS |
| GACCAGAGAAGAAAATACAG+AGG | 0.687498 | 3:-83275326 | MsG0380016427.01.T02:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTAATTAATTTGAAGTT+GGG | + | Chr3:83275176-83275195 | None:intergenic | 15.0% |
| !!! | TACTTTTTTATTTGGATTTT+GGG | + | Chr3:83275636-83275655 | None:intergenic | 15.0% |
| !!! | TATGTTAATTAATTTGAAGT+TGG | + | Chr3:83275177-83275196 | None:intergenic | 15.0% |
| !!! | TTACTTTTTTATTTGGATTT+TGG | + | Chr3:83275637-83275656 | None:intergenic | 15.0% |
| !!! | TTCAAATTTATTTGTTTCTT+AGG | - | Chr3:83275306-83275325 | MsG0380016427.01.T02:CDS | 15.0% |
| !! | TAACAAAAATTTCATGTTCA+TGG | - | Chr3:83275370-83275389 | MsG0380016427.01.T02:CDS | 20.0% |
| !! | TACAAATCAAAAGAATTCTT+AGG | + | Chr3:83274444-83274463 | None:intergenic | 20.0% |
| !! | TTAGATCCTAAAGAAAAAAA+AGG | + | Chr3:83274894-83274913 | None:intergenic | 20.0% |
| !!! | AAGAAAATAACTCTTGTTAT+TGG | - | Chr3:83275486-83275505 | MsG0380016427.01.T02:CDS | 20.0% |
| !!! | ATAGAGTACTAATTAACTTT+TGG | - | Chr3:83275556-83275575 | MsG0380016427.01.T02:CDS | 20.0% |
| !!! | TGTCTTTTTGCTTATATTTA+AGG | - | Chr3:83275529-83275548 | MsG0380016427.01.T02:CDS | 20.0% |
| ! | AAACTATGAACTTTCATTGA+AGG | - | Chr3:83274674-83274693 | MsG0380016427.01.T02:intron | 25.0% |
| ! | AAGAATTCTAGTGTCTATAA+TGG | - | Chr3:83274777-83274796 | MsG0380016427.01.T02:intron | 25.0% |
| ! | AATCAAAAGAATTCTTAGGT+TGG | + | Chr3:83274440-83274459 | None:intergenic | 25.0% |
| ! | AGAGAAAAAGAAGAAGAAAA+AGG | - | Chr3:83274914-83274933 | MsG0380016427.01.T02:CDS | 25.0% |
| ! | TAAGCAAAAAGACATGTATT+TGG | + | Chr3:83275523-83275542 | None:intergenic | 25.0% |
| ! | TACATGTGAAGAAAAATGAT+GGG | - | Chr3:83274826-83274845 | MsG0380016427.01.T02:intron | 25.0% |
| ! | TGAAAGTTCATAGTTTGATT+CGG | + | Chr3:83274670-83274689 | None:intergenic | 25.0% |
| !! | ACATTTTTATGCTTCTTTAG+AGG | - | Chr3:83275404-83275423 | MsG0380016427.01.T02:CDS | 25.0% |
| !!! | ATGTATAGTTGATTAGTTTC+TGG | - | Chr3:83275199-83275218 | MsG0380016427.01.T02:CDS | 25.0% |
| AAAATTCTCCAAATCCAACA+TGG | + | Chr3:83275466-83275485 | None:intergenic | 30.0% | |
| AAATTCTCCAAATCCAACAT+GGG | + | Chr3:83275465-83275484 | None:intergenic | 30.0% | |
| AATTCTAGTGTCTATAATGG+TGG | - | Chr3:83274780-83274799 | MsG0380016427.01.T02:intron | 30.0% | |
| AATTTAAACCAAACAGCCAA+AGG | + | Chr3:83275238-83275257 | None:intergenic | 30.0% | |
| AATTTCATGTTCATGGTTGT+TGG | - | Chr3:83275377-83275396 | MsG0380016427.01.T02:CDS | 30.0% | |
| ACAAAAAGAACTCATGGAAA+TGG | - | Chr3:83274632-83274651 | MsG0380016427.01.T02:intron | 30.0% | |
| CCACAAATTCTAATAATCTC+TGG | - | Chr3:83274493-83274512 | MsG0380016427.01.T02:intron | 30.0% | |
| CCAGAGATTATTAGAATTTG+TGG | + | Chr3:83274496-83274515 | None:intergenic | 30.0% | |
| GAAAGTTCATAGTTTGATTC+GGG | + | Chr3:83274669-83274688 | None:intergenic | 30.0% | |
| GTACATGTGAAGAAAAATGA+TGG | - | Chr3:83274825-83274844 | MsG0380016427.01.T02:intron | 30.0% | |
| TCACTCTCTTTATAAACAGA+AGG | + | Chr3:83275026-83275045 | None:intergenic | 30.0% | |
| ! | TTAACTTTTGGATGAAATGC+AGG | - | Chr3:83275568-83275587 | MsG0380016427.01.T02:CDS | 30.0% |
| !!! | GGGTTACCTTTTTTTTCTTT+AGG | - | Chr3:83274885-83274904 | MsG0380016427.01.T02:intron | 30.0% |
| AAGAACTCATGGAAATGGTT+CGG | - | Chr3:83274637-83274656 | MsG0380016427.01.T02:intron | 35.0% | |
| AATCAAATCCCATGTTGGAT+TGG | - | Chr3:83275433-83275452 | MsG0380016427.01.T02:CDS | 35.0% | |
| ACTTTCATTGAAGGATCTTG+TGG | - | Chr3:83274683-83274702 | MsG0380016427.01.T02:intron | 35.0% | |
| ATCAAATCCCATGTTGGATT+GGG | - | Chr3:83275434-83275453 | MsG0380016427.01.T02:CDS | 35.0% | |
| ATGAAACCAGACATGAAACA+TGG | - | Chr3:83274466-83274485 | MsG0380016427.01.T02:intron | 35.0% | |
| GTTCAAATCAAATCCCATGT+TGG | - | Chr3:83275428-83275447 | MsG0380016427.01.T02:CDS | 35.0% | |
| TATAATGGTGGCAAGAAGAT+TGG | - | Chr3:83274792-83274811 | MsG0380016427.01.T02:intron | 35.0% | |
| TGAAACCAGACATGAAACAT+GGG | - | Chr3:83274467-83274486 | MsG0380016427.01.T02:intron | 35.0% | |
| ! | ATTTCTGATGGACCAGTAAA+AGG | - | Chr3:83274963-83274982 | MsG0380016427.01.T02:CDS | 35.0% |
| ! | CAAGAAGATTGGTGATAAGA+AGG | - | Chr3:83274803-83274822 | MsG0380016427.01.T02:intron | 35.0% |
| ! | TTCTTTTTGTCCTCTCACTA+TGG | + | Chr3:83274622-83274641 | None:intergenic | 35.0% |
| !! | CAAAAGAATTCTTAGGTTGG+TGG | + | Chr3:83274437-83274456 | None:intergenic | 35.0% |
| !! | TTGATTAGTTTCTGGCTAGT+GGG | - | Chr3:83275207-83275226 | MsG0380016427.01.T02:CDS | 35.0% |
| !!! | ATTTTGGGTTTGCGAAACAA+AGG | + | Chr3:83275621-83275640 | None:intergenic | 35.0% |
| AAAAAGGTAACCCCACTTTC+AGG | + | Chr3:83274878-83274897 | None:intergenic | 40.0% | |
| ACTGGTCCATCAGAAATTGA+TGG | + | Chr3:83274960-83274979 | None:intergenic | 40.0% | |
| AGAAAATACAGAGGAGCAGA+AGG | - | Chr3:83274728-83274747 | MsG0380016427.01.T02:intron | 40.0% | |
| ATCACGATGAACAACCTAGA+TGG | - | Chr3:83274544-83274563 | MsG0380016427.01.T02:intron | 40.0% | |
| CCAAGACCATCAATTTCTGA+TGG | - | Chr3:83274951-83274970 | MsG0380016427.01.T02:CDS | 40.0% | |
| CTGATAAGGAAAAAGAGTGG+TGG | - | Chr3:83274991-83275010 | MsG0380016427.01.T02:CDS | 40.0% | |
| CTGCTGATAAGGAAAAAGAG+TGG | - | Chr3:83274988-83275007 | MsG0380016427.01.T02:CDS | 40.0% | |
| GACCAGAGAAGAAAATACAG+AGG | - | Chr3:83274719-83274738 | MsG0380016427.01.T02:intron | 40.0% | |
| GACTAAGAAGCAATAGCATC+AGG | - | Chr3:83275141-83275160 | MsG0380016427.01.T02:CDS | 40.0% | |
| GAGAGGACAAAAAGAACTCA+TGG | - | Chr3:83274626-83274645 | MsG0380016427.01.T02:intron | 40.0% | |
| TCGTGATACATGTCCAATTG+AGG | + | Chr3:83274531-83274550 | None:intergenic | 40.0% | |
| ! | CCATCAGAAATTGATGGTCT+TGG | + | Chr3:83274954-83274973 | None:intergenic | 40.0% |
| ! | CTCCTCTGTATTTTCTTCTC+TGG | + | Chr3:83274724-83274743 | None:intergenic | 40.0% |
| ! | TATTTTCTTCTCTGGTCCTG+TGG | + | Chr3:83274716-83274735 | None:intergenic | 40.0% |
| ! | TTATCAGCAGCACCTTTTAC+TGG | + | Chr3:83274978-83274997 | None:intergenic | 40.0% |
| !! | AGTAAAAGGTGCTGCTGATA+AGG | - | Chr3:83274977-83274996 | MsG0380016427.01.T02:CDS | 40.0% |
| !! | GTTGATTAGTTTCTGGCTAG+TGG | - | Chr3:83275206-83275225 | MsG0380016427.01.T02:CDS | 40.0% |
| AAATACAGAGGAGCAGAAGG+AGG | - | Chr3:83274731-83274750 | MsG0380016427.01.T02:intron | 45.0% | |
| ATGAAATGCAGGCGTGAGAA+AGG | - | Chr3:83275579-83275598 | MsG0380016427.01.T02:CDS | 45.0% | |
| ATGGCCTCTGTTCTTGAAAC+AGG | + | Chr3:83274603-83274622 | None:intergenic | 45.0% | |
| CGAGGTTTCTACCTGAAAGT+GGG | - | Chr3:83274864-83274883 | MsG0380016427.01.T02:intron | 45.0% | |
| CTGTTCTTGAAACAGGGGAA+AGG | + | Chr3:83274596-83274615 | None:intergenic | 45.0% | |
| GAGGTTTCTACCTGAAAGTG+GGG | - | Chr3:83274865-83274884 | MsG0380016427.01.T02:intron | 45.0% | |
| GGAGAATCCCATGTTGGATT+TGG | - | Chr3:83275455-83275474 | MsG0380016427.01.T02:CDS | 45.0% | |
| GGATTCTCCCAATCCAACAT+GGG | + | Chr3:83275444-83275463 | None:intergenic | 45.0% | |
| GGGAAAATTGATCGTGATCG+AGG | - | Chr3:83274846-83274865 | MsG0380016427.01.T02:intron | 45.0% | |
| TCCAATTGAGGCTGTGTTGA+AGG | + | Chr3:83274519-83274538 | None:intergenic | 45.0% | |
| TCGAGGTTTCTACCTGAAAG+TGG | - | Chr3:83274863-83274882 | MsG0380016427.01.T02:intron | 45.0% | |
| TGGCCTCTGTTCTTGAAACA+GGG | + | Chr3:83274602-83274621 | None:intergenic | 45.0% | |
| TTCCCCTGTTTCAAGAACAG+AGG | - | Chr3:83274596-83274615 | MsG0380016427.01.T02:intron | 45.0% | |
| ! | AGAAAGGTGGAGGTATATGC+TGG | - | Chr3:83275595-83275614 | MsG0380016427.01.T02:CDS | 45.0% |
| !!! | GGTTGGTGGTGTTTTCTTGT+TGG | + | Chr3:83274423-83274442 | None:intergenic | 45.0% |
| AAATGCAGGCGTGAGAAAGG+TGG | - | Chr3:83275582-83275601 | MsG0380016427.01.T02:CDS | 50.0% | |
| AGAACAGAGGCCATAGTGAG+AGG | - | Chr3:83274609-83274628 | MsG0380016427.01.T02:intron | 50.0% | |
| ATCTTGTGGAACACCACCAC+AGG | - | Chr3:83274697-83274716 | MsG0380016427.01.T02:intron | 50.0% | |
| GCATCGAGCAGCAACAGTAA+TGG | - | Chr3:83275059-83275078 | MsG0380016427.01.T02:CDS | 50.0% | |
| GCCTTCAACACAGCCTCAAT+TGG | - | Chr3:83274515-83274534 | MsG0380016427.01.T02:intron | 50.0% | |
| GGATTGGGAGAATCCCATGT+TGG | - | Chr3:83275449-83275468 | MsG0380016427.01.T02:CDS | 50.0% | |
| GGCCTCTGTTCTTGAAACAG+GGG | + | Chr3:83274601-83274620 | None:intergenic | 50.0% | |
| GGCTTCCCATGTTTCATGTC+TGG | + | Chr3:83274475-83274494 | None:intergenic | 50.0% | |
| GGGATTCTCCCAATCCAACA+TGG | + | Chr3:83275445-83275464 | None:intergenic | 50.0% | |
| GGGGAAAGGCTTCTGTAATG+TGG | + | Chr3:83274582-83274601 | None:intergenic | 50.0% | |
| GGGTTCTTCCTTTGGCTGTT+TGG | - | Chr3:83275227-83275246 | MsG0380016427.01.T02:CDS | 50.0% | |
| GGTGAGTTCACACTCCATCT+AGG | + | Chr3:83274561-83274580 | None:intergenic | 50.0% | |
| TTTCTTCTCTGGTCCTGTGG+TGG | + | Chr3:83274713-83274732 | None:intergenic | 50.0% | |
| !! | TGGCTAGTGGGTTCTTCCTT+TGG | - | Chr3:83275219-83275238 | MsG0380016427.01.T02:CDS | 50.0% |
| TACAGAGGAGCAGAAGGAGG+AGG | - | Chr3:83274734-83274753 | MsG0380016427.01.T02:intron | 55.0% | |
| AGAGGAGCAGAAGGAGGAGG+AGG | - | Chr3:83274737-83274756 | MsG0380016427.01.T02:intron | 60.0% | |
| GCAGAAGGAGGAGGAGGAGA+AGG | - | Chr3:83274743-83274762 | MsG0380016427.01.T02:intron | 60.0% | |
| GGAGGAGGAGGAGAAGGAGA+AGG | - | Chr3:83274749-83274768 | MsG0380016427.01.T02:intron | 60.0% | |
| TGCAGGCGTGAGAAAGGTGG+AGG | - | Chr3:83275585-83275604 | MsG0380016427.01.T02:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 83274411 | 83275656 | 83274411 | ID=MsG0380016427.01;Name=MsG0380016427.01 |
| Chr3 | mRNA | 83274411 | 83275656 | 83274411 | ID=MsG0380016427.01.T01;Parent=MsG0380016427.01;Name=MsG0380016427.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|3|0|263 |
| Chr3 | exon | 83274411 | 83274480 | 83274411 | ID=MsG0380016427.01.T01:exon:11070;Parent=MsG0380016427.01.T01 |
| Chr3 | exon | 83274905 | 83275296 | 83274905 | ID=MsG0380016427.01.T01:exon:11069;Parent=MsG0380016427.01.T01 |
| Chr3 | exon | 83275327 | 83275656 | 83275327 | ID=MsG0380016427.01.T01:exon:11068;Parent=MsG0380016427.01.T01 |
| Chr3 | CDS | 83275327 | 83275656 | 83275327 | ID=MsG0380016427.01.T01:cds;Parent=MsG0380016427.01.T01 |
| Chr3 | CDS | 83274905 | 83275296 | 83274905 | ID=MsG0380016427.01.T01:cds;Parent=MsG0380016427.01.T01 |
| Chr3 | CDS | 83274411 | 83274480 | 83274411 | ID=MsG0380016427.01.T01:cds;Parent=MsG0380016427.01.T01 |
| Chr3 | mRNA | 83274411 | 83275656 | 83274411 | ID=MsG0380016427.01.T02;Parent=MsG0380016427.01;Name=MsG0380016427.01.T02;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0.5|2|0|272 |
| Chr3 | exon | 83274411 | 83274477 | 83274411 | ID=MsG0380016427.01.T02:exon:11072;Parent=MsG0380016427.01.T02 |
| Chr3 | exon | 83274905 | 83275656 | 83274905 | ID=MsG0380016427.01.T02:exon:11071;Parent=MsG0380016427.01.T02 |
| Chr3 | CDS | 83274905 | 83275656 | 83274905 | ID=MsG0380016427.01.T02:cds;Parent=MsG0380016427.01.T02 |
| Chr3 | CDS | 83274411 | 83274477 | 83274411 | ID=MsG0380016427.01.T02:cds;Parent=MsG0380016427.01.T02 |
| Chr3 | mRNA | 83274853 | 83275422 | 83274853 | ID=MsG0380016427.01.T03;Parent=MsG0380016427.01;Name=MsG0380016427.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|189 |
| Chr3 | exon | 83274853 | 83275422 | 83274853 | ID=MsG0380016427.01.T03:exon:11073;Parent=MsG0380016427.01.T03 |
| Chr3 | CDS | 83274853 | 83275422 | 83274853 | ID=MsG0380016427.01.T03:cds;Parent=MsG0380016427.01.T03 |
| Gene Sequence |
| Protein sequence |
