Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002992.01.T01 | XP_024632783.1 | 90.654 | 321 | 25 | 1 | 1 | 321 | 1 | 316 | 0 | 544 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002992.01.T01 | A0A396JPZ8 | 90.343 | 321 | 25 | 2 | 1 | 321 | 1 | 315 | 0.0 | 537 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048058.01 | MsG0180002992.01 | 0.802483 | 5.490736e-49 | 2.692724e-46 |
MsG0080048784.01 | MsG0180002992.01 | 0.803383 | 3.579292e-49 | 1.796061e-46 |
MsG0180000055.01 | MsG0180002992.01 | 0.802100 | 6.583580e-49 | 3.197311e-46 |
MsG0180000295.01 | MsG0180002992.01 | 0.817657 | 2.943267e-52 | 2.156362e-49 |
MsG0180000611.01 | MsG0180002992.01 | 0.812609 | 3.890268e-51 | 2.484638e-48 |
MsG0180001237.01 | MsG0180002992.01 | 0.807008 | 6.235405e-50 | 3.434369e-47 |
MsG0180001311.01 | MsG0180002992.01 | 0.859340 | 4.425214e-63 | 1.164861e-59 |
MsG0180002100.01 | MsG0180002992.01 | 0.809535 | 1.803243e-50 | 1.061499e-47 |
MsG0180002664.01 | MsG0180002992.01 | 0.806373 | 8.487492e-50 | 4.599144e-47 |
MsG0180002992.01 | MsG0180003807.01 | 0.845647 | 3.565332e-59 | 5.982132e-56 |
MsG0180002992.01 | MsG0180003885.01 | 0.800667 | 1.294298e-48 | 6.061820e-46 |
MsG0180002992.01 | MsG0180003922.01 | 0.817508 | 3.179274e-52 | 2.319853e-49 |
MsG0180002992.01 | MsG0180003932.01 | 0.828396 | 9.200611e-55 | 9.134377e-52 |
MsG0180002992.01 | MsG0180004128.01 | 0.817313 | 3.517985e-52 | 2.553161e-49 |
MsG0180002992.01 | MsG0180004160.01 | 0.811699 | 6.142378e-51 | 3.828308e-48 |
MsG0180002992.01 | MsG0180004272.01 | 0.822099 | 2.839465e-53 | 2.353582e-50 |
MsG0180002992.01 | MsG0180004390.01 | 0.818211 | 2.206144e-52 | 1.641037e-49 |
MsG0180002992.01 | MsG0180004486.01 | 0.802822 | 4.674449e-49 | 2.312456e-46 |
MsG0180002992.01 | MsG0180004500.01 | 0.815439 | 9.238569e-52 | 6.369953e-49 |
MsG0180002992.01 | MsG0180005049.01 | 0.803031 | 4.232691e-49 | 2.104886e-46 |
MsG0180002992.01 | MsG0180005443.01 | 0.853397 | 2.454544e-61 | 5.296462e-58 |
MsG0180002992.01 | MsG0180005445.01 | 0.823703 | 1.201024e-53 | 1.042067e-50 |
MsG0180002992.01 | MsG0180005451.01 | 0.866210 | 3.368957e-65 | 1.126284e-61 |
MsG0180002992.01 | MsG0180005493.01 | 0.836471 | 9.179163e-57 | 1.157945e-53 |
MsG0180002992.01 | MsG0180005507.01 | 0.823686 | 1.211763e-53 | 1.050865e-50 |
MsG0180002992.01 | MsG0180006025.01 | 0.840035 | 1.107828e-57 | 1.558689e-54 |
MsG0180002992.01 | MsG0180006104.01 | 0.818719 | 1.692742e-52 | 1.276926e-49 |
MsG0180002992.01 | MsG0280006679.01 | 0.816805 | 4.575962e-52 | 3.275129e-49 |
MsG0180002992.01 | MsG0280006692.01 | 0.822364 | 2.464149e-53 | 2.058322e-50 |
MsG0180002992.01 | MsG0280006852.01 | 0.827741 | 1.323222e-54 | 1.288700e-51 |
MsG0180002992.01 | MsG0280007109.01 | 0.800027 | 1.747076e-48 | 8.050379e-46 |
MsG0180002992.01 | MsG0280007165.01 | -0.802718 | 4.910554e-49 | 2.422743e-46 |
MsG0180002992.01 | MsG0280007208.01 | 0.818302 | 2.104547e-52 | 1.569394e-49 |
MsG0180002992.01 | MsG0280007440.01 | 0.844147 | 9.053675e-59 | 1.448418e-55 |
MsG0180002992.01 | MsG0280007531.01 | 0.819638 | 1.045703e-52 | 8.091799e-50 |
MsG0180002992.01 | MsG0280007710.01 | 0.820990 | 5.122070e-53 | 4.115927e-50 |
MsG0180002992.01 | MsG0280007764.01 | 0.809785 | 1.593860e-50 | 9.444974e-48 |
MsG0180002992.01 | MsG0280010109.01 | 0.810854 | 9.369548e-51 | 5.711198e-48 |
MsG0180002992.01 | MsG0280010411.01 | 0.825513 | 4.500068e-54 | 4.110364e-51 |
MsG0180002992.01 | MsG0280011333.01 | 0.805885 | 1.075435e-49 | 5.755516e-47 |
MsG0180002992.01 | MsG0380012160.01 | 0.806640 | 7.455429e-50 | 4.067340e-47 |
MsG0180002992.01 | MsG0380013686.01 | 0.823542 | 1.309916e-53 | 1.131143e-50 |
MsG0180002992.01 | MsG0380014576.01 | 0.812416 | 4.286510e-51 | 2.723981e-48 |
MsG0180002992.01 | MsG0380014948.01 | 0.805149 | 1.534907e-49 | 8.060387e-47 |
MsG0180002992.01 | MsG0380014949.01 | 0.812287 | 4.573219e-51 | 2.896080e-48 |
MsG0180002992.01 | MsG0380015220.01 | 0.818890 | 1.547493e-52 | 1.172997e-49 |
MsG0180002992.01 | MsG0380015289.01 | 0.837697 | 4.462038e-57 | 5.843089e-54 |
MsG0180002992.01 | MsG0380015702.01 | 0.805681 | 1.186854e-49 | 6.318724e-47 |
MsG0180002992.01 | MsG0380015893.01 | 0.803386 | 3.572846e-49 | 1.793026e-46 |
MsG0180002992.01 | MsG0380016505.01 | 0.826785 | 2.242044e-54 | 2.123514e-51 |
MsG0180002992.01 | MsG0380017433.01 | 0.805397 | 1.361549e-49 | 7.195662e-47 |
MsG0180002992.01 | MsG0380017506.01 | 0.806732 | 7.131476e-50 | 3.900033e-47 |
MsG0180002992.01 | MsG0480018235.01 | 0.809534 | 1.804248e-50 | 1.062059e-47 |
MsG0180002992.01 | MsG0480018278.01 | 0.804085 | 2.558624e-49 | 1.307331e-46 |
MsG0180002992.01 | MsG0480018292.01 | 0.820326 | 7.277724e-53 | 5.740258e-50 |
MsG0180002992.01 | MsG0480019544.01 | 0.824210 | 9.129590e-54 | 8.034291e-51 |
MsG0180002992.01 | MsG0480020331.01 | 0.808738 | 2.672021e-50 | 1.539714e-47 |
MsG0180002992.01 | MsG0480020540.01 | 0.821625 | 3.656032e-53 | 2.989900e-50 |
MsG0180002992.01 | MsG0480020719.01 | 0.808208 | 3.467343e-50 | 1.970689e-47 |
MsG0180002992.01 | MsG0480020877.01 | 0.801404 | 9.151385e-49 | 4.366500e-46 |
MsG0180002992.01 | MsG0480021190.01 | 0.827434 | 1.568224e-54 | 1.513836e-51 |
MsG0180002992.01 | MsG0480021492.01 | 0.807917 | 3.999502e-50 | 2.255523e-47 |
MsG0180002992.01 | MsG0480021592.01 | 0.819966 | 8.796100e-53 | 6.869728e-50 |
MsG0180002992.01 | MsG0480021870.01 | 0.867480 | 1.327221e-65 | 4.640602e-62 |
MsG0180002992.01 | MsG0480022228.01 | 0.827221 | 1.763685e-54 | 1.691923e-51 |
MsG0180002992.01 | MsG0480022514.01 | 0.806778 | 6.971621e-50 | 3.817113e-47 |
MsG0180002992.01 | MsG0480023377.01 | 0.848957 | 4.401425e-60 | 8.215030e-57 |
MsG0180002992.01 | MsG0480023387.01 | 0.833235 | 5.991641e-56 | 6.858221e-53 |
MsG0180002992.01 | MsG0480023670.01 | 0.808716 | 2.702000e-50 | 1.556073e-47 |
MsG0180002992.01 | MsG0580024157.01 | 0.810631 | 1.046980e-50 | 6.343725e-48 |
MsG0180002992.01 | MsG0580024960.01 | 0.813320 | 2.716435e-51 | 1.768302e-48 |
MsG0180002992.01 | MsG0580025042.01 | 0.810413 | 1.166828e-50 | 7.028670e-48 |
MsG0180002992.01 | MsG0580025206.01 | 0.801983 | 6.959774e-49 | 3.369798e-46 |
MsG0180002992.01 | MsG0580025816.01 | 0.813331 | 2.702623e-51 | 1.759770e-48 |
MsG0180002992.01 | MsG0580025900.01 | 0.809834 | 1.555479e-50 | 9.229190e-48 |
MsG0180002992.01 | MsG0580026864.01 | 0.805865 | 1.086073e-49 | 5.809476e-47 |
MsG0180002992.01 | MsG0580029550.01 | 0.806503 | 7.968638e-50 | 4.332373e-47 |
MsG0180002992.01 | MsG0580029919.01 | 0.843597 | 1.270335e-58 | 1.997698e-55 |
MsG0180002992.01 | MsG0580030142.01 | 0.803078 | 4.138952e-49 | 2.060675e-46 |
MsG0180002992.01 | MsG0680031301.01 | 0.803240 | 3.830943e-49 | 1.915352e-46 |
MsG0180002992.01 | MsG0680032015.01 | 0.808440 | 3.093736e-50 | 1.769094e-47 |
MsG0180002992.01 | MsG0680033465.01 | 0.806699 | 7.244340e-50 | 3.958323e-47 |
MsG0180002992.01 | MsG0680033926.01 | 0.841661 | 4.149585e-58 | 6.139474e-55 |
MsG0180002992.01 | MsG0680034235.01 | 0.809486 | 1.847452e-50 | 1.086065e-47 |
MsG0180002992.01 | MsG0680034476.01 | 0.813001 | 3.193036e-51 | 2.060578e-48 |
MsG0180002992.01 | MsG0780035937.01 | 0.823787 | 1.147470e-53 | 9.979173e-51 |
MsG0180002992.01 | MsG0780036633.01 | 0.815173 | 1.058774e-51 | 7.246349e-49 |
MsG0180002992.01 | MsG0780036773.01 | 0.808758 | 2.645649e-50 | 1.525401e-47 |
MsG0180002992.01 | MsG0780037123.01 | 0.814096 | 1.833060e-51 | 1.218601e-48 |
MsG0180002992.01 | MsG0780038644.01 | 0.808766 | 2.635826e-50 | 1.520000e-47 |
MsG0180002992.01 | MsG0780038907.01 | 0.800246 | 1.576581e-48 | 7.305403e-46 |
MsG0180002992.01 | MsG0780039717.01 | 0.822283 | 2.572988e-53 | 2.144249e-50 |
MsG0180002992.01 | MsG0780039828.01 | 0.809265 | 2.061263e-50 | 1.204666e-47 |
MsG0180002992.01 | MsG0780040176.01 | 0.807236 | 5.579527e-50 | 3.091419e-47 |
MsG0180002992.01 | MsG0780040418.01 | 0.823500 | 1.339465e-53 | 1.155402e-50 |
MsG0180002992.01 | MsG0780040591.01 | 0.821169 | 4.657747e-53 | 3.761111e-50 |
MsG0180002992.01 | MsG0780041193.01 | 0.803368 | 3.604976e-49 | 1.808234e-46 |
MsG0180002992.01 | MsG0780041258.01 | 0.827327 | 1.663024e-54 | 1.600492e-51 |
MsG0180002992.01 | MsG0780041390.01 | 0.853793 | 1.888787e-61 | 4.129626e-58 |
MsG0180002992.01 | MsG0780041435.01 | 0.804224 | 2.393662e-49 | 1.227358e-46 |
MsG0180002992.01 | MsG0780041654.01 | 0.805820 | 1.109798e-49 | 5.929553e-47 |
MsG0180002992.01 | MsG0880042324.01 | 0.806994 | 6.276646e-50 | 3.455787e-47 |
MsG0180002992.01 | MsG0880042348.01 | 0.818303 | 2.102914e-52 | 1.568237e-49 |
MsG0180002992.01 | MsG0880042760.01 | 0.805198 | 1.498992e-49 | 7.881684e-47 |
MsG0180002992.01 | MsG0880043194.01 | 0.802110 | 6.552240e-49 | 3.182898e-46 |
MsG0180002992.01 | MsG0880044067.01 | 0.811766 | 5.939594e-51 | 3.708601e-48 |
MsG0180002992.01 | MsG0880044565.01 | 0.818575 | 1.824612e-52 | 1.370957e-49 |
MsG0180002992.01 | MsG0880045329.01 | 0.868982 | 4.353715e-66 | 1.606539e-62 |
MsG0180002992.01 | MsG0880045663.01 | 0.800696 | 1.276805e-48 | 5.984061e-46 |
MsG0180002992.01 | MsG0880046027.01 | 0.835000 | 2.164789e-56 | 2.612675e-53 |
MsG0180002992.01 | MsG0880046074.01 | 0.812722 | 3.674326e-51 | 2.353794e-48 |
MsG0180002992.01 | MsG0880046538.01 | 0.824406 | 8.214062e-54 | 7.268353e-51 |
MsG0180002992.01 | MsG0880047743.01 | 0.800173 | 1.631568e-48 | 7.545998e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002992.01.T01 | MTR_1g054175 | 89.902 | 307 | 25 | 2 | 15 | 321 | 1 | 301 | 0.0 | 509 |
MsG0180002992.01.T01 | MTR_1g054175 | 88.843 | 242 | 22 | 1 | 80 | 321 | 10 | 246 | 1.45e-137 | 390 |
MsG0180002992.01.T01 | MTR_7g093350 | 48.503 | 334 | 130 | 11 | 12 | 321 | 23 | 338 | 5.47e-75 | 234 |
MsG0180002992.01.T01 | MTR_7g093360 | 48.204 | 334 | 135 | 10 | 12 | 321 | 23 | 342 | 1.10e-72 | 228 |
MsG0180002992.01.T01 | MTR_7g093350 | 50.385 | 260 | 96 | 9 | 80 | 321 | 3 | 247 | 1.07e-64 | 204 |
MsG0180002992.01.T01 | MTR_7g093360 | 52.066 | 242 | 84 | 8 | 96 | 321 | 27 | 252 | 5.92e-64 | 202 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002992.01.T01 | AT2G42040 | 54.630 | 108 | 21 | 3 | 203 | 310 | 163 | 242 | 1.56e-21 | 92.4 |
Find 76 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCACAAGAAGCAAGAAATTT+TGG | 0.142499 | 1:-54515935 | MsG0180002992.01.T01:intron |
TCTCTATGTGAGCATCATTT+AGG | 0.194755 | 1:-54514560 | MsG0180002992.01.T01:CDS |
CTTCCTCTCCGTTTCTTTAG+AGG | 0.209046 | 1:+54514947 | None:intergenic |
AGTACTAATCGCAAAATAAT+AGG | 0.225839 | 1:-54514274 | MsG0180002992.01.T01:three_prime_UTR |
GGAGGTTCAGTTTGAGATAT+TGG | 0.256335 | 1:+54514464 | None:intergenic |
CTTGCTTCTTGTGCTGGCTT+AGG | 0.269170 | 1:+54515944 | None:intergenic |
CTCTATGTGAGCATCATTTA+GGG | 0.282907 | 1:-54514559 | MsG0180002992.01.T01:CDS |
GGTAAGAGGTGGTGCACTTA+TGG | 0.318134 | 1:-54514651 | MsG0180002992.01.T01:CDS |
TCGCGGTGCAGTCGTGTTAA+TGG | 0.321151 | 1:-54514623 | MsG0180002992.01.T01:CDS |
GCATGACAAGTGTAAGAAAT+AGG | 0.329001 | 1:-54514520 | MsG0180002992.01.T01:CDS |
TTGCTTCTTGTGCTGGCTTA+GGG | 0.336473 | 1:+54515945 | None:intergenic |
TTACCTTGTTTATGACTAGA+AGG | 0.355956 | 1:+54515102 | None:intergenic |
AAATTTCTTGCTTCTTGTGC+TGG | 0.356796 | 1:+54515938 | None:intergenic |
GAAAAGCTAACCAAGTTTGA+TGG | 0.358390 | 1:-54514434 | MsG0180002992.01.T01:CDS |
TCATGAGTGCAAGAAAGTTT+TGG | 0.385868 | 1:+54516063 | None:intergenic |
TGAACTTGCACTCACGTATA+AGG | 0.423080 | 1:+54514186 | None:intergenic |
GTACTAATCGCAAAATAATA+GGG | 0.423307 | 1:-54514273 | MsG0180002992.01.T01:three_prime_UTR |
CTCTTCTTCGCGATAATCAT+CGG | 0.437633 | 1:+54514389 | None:intergenic |
TATTTCATGTACTTCAGATT+GGG | 0.439552 | 1:-54514234 | MsG0180002992.01.T01:three_prime_UTR |
ATCGACTACTCCCACCGATC+GGG | 0.452207 | 1:-54515993 | MsG0180002992.01.T01:CDS |
CAGATCTCAACATGATCAAC+CGG | 0.459291 | 1:-54516128 | MsG0180002992.01.T01:CDS |
TTATGACTAGAAGGCCTTGA+AGG | 0.462959 | 1:+54515111 | None:intergenic |
GCGATCGATGAGTAGTTTGT+TGG | 0.464541 | 1:-54514342 | MsG0180002992.01.T01:CDS |
ATTGTCTTCACCATCAAACT+TGG | 0.466393 | 1:+54514424 | None:intergenic |
ATATTTCATGTACTTCAGAT+TGG | 0.466810 | 1:-54514235 | MsG0180002992.01.T01:three_prime_UTR |
GCGAAGAAGAGGATGAAGAT+TGG | 0.473786 | 1:-54514377 | MsG0180002992.01.T01:CDS |
TGTCAAGGAAGGTGGACAAA+AGG | 0.483403 | 1:-54515639 | MsG0180002992.01.T01:CDS |
GGAAGATCATAAAGAAGAAG+AGG | 0.484016 | 1:-54514822 | MsG0180002992.01.T01:CDS |
TACTGCACTGTTATCTCTCT+CGG | 0.487895 | 1:-54516034 | MsG0180002992.01.T01:CDS |
GAATCATCACAGCCGTTGGC+TGG | 0.490915 | 1:+54515967 | None:intergenic |
AGAGGAAGCTTTGATATGAA+TGG | 0.496514 | 1:-54514932 | MsG0180002992.01.T01:CDS |
TGCAGTCGTGTTAATGGAAG+AGG | 0.503807 | 1:-54514617 | MsG0180002992.01.T01:CDS |
TAGAGAAACAAAACAAAAGA+AGG | 0.509554 | 1:-54514789 | MsG0180002992.01.T01:intron |
AGTGTTATGATAGTAATGAA+TGG | 0.510545 | 1:-54514853 | MsG0180002992.01.T01:CDS |
TCATTTATATAGATTGGAGA+TGG | 0.513170 | 1:-54514991 | MsG0180002992.01.T01:intron |
CGATCGATGAGTAGTTTGTT+GGG | 0.513939 | 1:-54514341 | MsG0180002992.01.T01:CDS |
CGATGATTATCGCGAAGAAG+AGG | 0.515105 | 1:-54514388 | MsG0180002992.01.T01:CDS |
TCATAAAGAAGAAGAGGTAG+TGG | 0.518196 | 1:-54514816 | MsG0180002992.01.T01:CDS |
GTCAAGGAAGGTGGACAAAA+GGG | 0.518519 | 1:-54515638 | MsG0180002992.01.T01:CDS |
TTGGCTGGTTTCCCGATCGG+TGG | 0.518762 | 1:+54515982 | None:intergenic |
CCGTTGGCTGGTTTCCCGAT+CGG | 0.519531 | 1:+54515979 | None:intergenic |
GATCGACTACTCCCACCGAT+CGG | 0.531970 | 1:-54515994 | MsG0180002992.01.T01:CDS |
TTAGAGGAAAAGCTTTCTCT+CGG | 0.536540 | 1:+54514963 | None:intergenic |
AGAGGGCATGTCAAGGAAGG+TGG | 0.537277 | 1:-54515647 | MsG0180002992.01.T01:CDS |
GATCAACCGGTCACAGGTGG+TGG | 0.541227 | 1:-54516115 | MsG0180002992.01.T01:CDS |
ACAAACAATCAGTGATCTCA+TGG | 0.542035 | 1:-54514318 | MsG0180002992.01.T01:CDS |
TGGCTGGTTTCCCGATCGGT+GGG | 0.543310 | 1:+54515983 | None:intergenic |
AGCATCATTTAGGGAAAGGA+AGG | 0.554136 | 1:-54514550 | MsG0180002992.01.T01:CDS |
GGGAGAGGGCATGTCAAGGA+AGG | 0.558804 | 1:-54515650 | MsG0180002992.01.T01:CDS |
TGTGATTTGCAGGTAGAAGA+TGG | 0.559441 | 1:-54515671 | MsG0180002992.01.T01:intron |
TAGTAATGAATGGGATGAAG+AGG | 0.560430 | 1:-54514843 | MsG0180002992.01.T01:CDS |
GTGTTATGATAGTAATGAAT+GGG | 0.561410 | 1:-54514852 | MsG0180002992.01.T01:CDS |
TGTAAGAAATAGGTCTATTG+TGG | 0.562415 | 1:-54514510 | MsG0180002992.01.T01:CDS |
CAACATGATCAACCGGTCAC+AGG | 0.565198 | 1:-54516121 | MsG0180002992.01.T01:CDS |
TGTGAGCATCATTTAGGGAA+AGG | 0.571914 | 1:-54514554 | MsG0180002992.01.T01:CDS |
GAGTGCACAAACTTCAACTG+AGG | 0.575039 | 1:-54515142 | MsG0180002992.01.T01:CDS |
GTGATTTGCAGGTAGAAGAT+GGG | 0.581315 | 1:-54515670 | MsG0180002992.01.T01:intron |
AGTAGTCGATCAGACGGCTG+AGG | 0.594515 | 1:+54516006 | None:intergenic |
GTTGCACCACCACCTGTGAC+CGG | 0.601392 | 1:+54516109 | None:intergenic |
TTGCAGGTAGAAGATGGGAG+AGG | 0.602099 | 1:-54515665 | MsG0180002992.01.T01:intron |
GACAAAAGGGTAATGATACC+AGG | 0.602132 | 1:-54515625 | MsG0180002992.01.T01:intron |
GAAGAGGATGAAGATTGGAA+TGG | 0.603128 | 1:-54514372 | MsG0180002992.01.T01:CDS |
GTGTTAATGGAAGAGGATGG+AGG | 0.605411 | 1:-54514610 | MsG0180002992.01.T01:CDS |
GTGCACTTATGGAAGGTTCG+CGG | 0.606666 | 1:-54514640 | MsG0180002992.01.T01:CDS |
AGAGAATAACCGACTAGTGT+TGG | 0.608366 | 1:+54514578 | None:intergenic |
TGCAGGTAGAAGATGGGAGA+GGG | 0.613399 | 1:-54515664 | MsG0180002992.01.T01:intron |
AGATGGGAGAGGGCATGTCA+AGG | 0.620023 | 1:-54515654 | MsG0180002992.01.T01:CDS |
AGAGGTGGTGCACTTATGGA+AGG | 0.620926 | 1:-54514647 | MsG0180002992.01.T01:CDS |
TAGGGAATCATCACAGCCGT+TGG | 0.624031 | 1:+54515963 | None:intergenic |
TGTTGTCAACCAACACTAGT+CGG | 0.655661 | 1:-54514587 | MsG0180002992.01.T01:CDS |
AGGCCTTCTAGTCATAAACA+AGG | 0.659693 | 1:-54515105 | MsG0180002992.01.T01:intron |
CATGATCAACCGGTCACAGG+TGG | 0.668404 | 1:-54516118 | MsG0180002992.01.T01:CDS |
TTTCCTCTAAAGAAACGGAG+AGG | 0.668761 | 1:-54514950 | MsG0180002992.01.T01:CDS |
GGTGGGAGTAGTCGATCAGA+CGG | 0.671530 | 1:+54516000 | None:intergenic |
CCGATCGGGAAACCAGCCAA+CGG | 0.672458 | 1:-54515979 | MsG0180002992.01.T01:CDS |
GTCGTGTTAATGGAAGAGGA+TGG | 0.680449 | 1:-54514613 | MsG0180002992.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAATTTTTTTTTTTTTTT+GGG | - | Chr1:54514388-54514407 | MsG0180002992.01.T01:CDS | 0.0% |
!!! | TTTAAATTTTTTTTTTTTTT+TGG | - | Chr1:54514387-54514406 | MsG0180002992.01.T01:CDS | 0.0% |
!! | CAAAATTAAAATAAAAAAGA+AGG | - | Chr1:54515591-54515610 | MsG0180002992.01.T01:intron | 10.0% |
!! | TATTAATGTGTTATATTTAT+TGG | - | Chr1:54515186-54515205 | MsG0180002992.01.T01:intron | 10.0% |
!!! | AATTTTGTAAACATTATATA+AGG | + | Chr1:54515578-54515597 | None:intergenic | 10.0% |
!!! | ATTTTATTTCACATTCATAA+AGG | - | Chr1:54514476-54514495 | MsG0180002992.01.T01:CDS | 15.0% |
!!! | TTTTATTTCACATTCATAAA+GGG | - | Chr1:54514477-54514496 | MsG0180002992.01.T01:CDS | 15.0% |
!! | AAAAAAAGATGTGATGTAAA+TGG | + | Chr1:54514983-54515002 | None:intergenic | 20.0% |
!! | AAAAAAGATGTGATGTAAAT+GGG | + | Chr1:54514982-54515001 | None:intergenic | 20.0% |
!! | AAAATAAAAAAGAAGGTAAG+AGG | - | Chr1:54515598-54515617 | MsG0180002992.01.T01:intron | 20.0% |
!! | AATAATTTCATGTCTTTCTT+TGG | + | Chr1:54514669-54514688 | None:intergenic | 20.0% |
!! | GAATATCTCATAGTAAAAAA+AGG | - | Chr1:54514702-54514721 | MsG0180002992.01.T01:intron | 20.0% |
!! | TTTATTTCACATTCATAAAG+GGG | - | Chr1:54514478-54514497 | MsG0180002992.01.T01:CDS | 20.0% |
!!! | AATATTTTTGAAAGACACAA+AGG | - | Chr1:54514502-54514521 | MsG0180002992.01.T01:CDS | 20.0% |
!!! | ATATTTTTGAAAGACACAAA+GGG | - | Chr1:54514503-54514522 | MsG0180002992.01.T01:CDS | 20.0% |
!!! | CTATTGTCATTTATATAGAT+TGG | - | Chr1:54515266-54515285 | MsG0180002992.01.T01:intron | 20.0% |
!!! | TTTTTACTATGAGATATTCA+TGG | + | Chr1:54514701-54514720 | None:intergenic | 20.0% |
! | AAAAAGATGTGATGTAAATG+GGG | + | Chr1:54514981-54515000 | None:intergenic | 25.0% |
! | ACTTCAAGGTAAAAAAGAAA+AGG | + | Chr1:54515031-54515050 | None:intergenic | 25.0% |
! | AGGATCCACTAAAATTAATA+TGG | + | Chr1:54514546-54514565 | None:intergenic | 25.0% |
! | AGTACTAATCGCAAAATAAT+AGG | - | Chr1:54515989-54516008 | MsG0180002992.01.T01:CDS | 25.0% |
! | AGTGTTATGATAGTAATGAA+TGG | - | Chr1:54515410-54515429 | MsG0180002992.01.T01:intron | 25.0% |
! | ATATTTCATGTACTTCAGAT+TGG | - | Chr1:54516028-54516047 | MsG0180002992.01.T01:CDS | 25.0% |
! | CACAAAAAAGAAACATACAT+AGG | + | Chr1:54514566-54514585 | None:intergenic | 25.0% |
! | GTAAAAAAAGGTGAAAAACA+TGG | - | Chr1:54514714-54514733 | MsG0180002992.01.T01:intron | 25.0% |
! | GTACTAATCGCAAAATAATA+GGG | - | Chr1:54515990-54516009 | MsG0180002992.01.T01:CDS | 25.0% |
! | GTGTTATGATAGTAATGAAT+GGG | - | Chr1:54515411-54515430 | MsG0180002992.01.T01:intron | 25.0% |
! | TAGAGAAACAAAACAAAAGA+AGG | - | Chr1:54515474-54515493 | MsG0180002992.01.T01:intron | 25.0% |
! | TATTTCATGTACTTCAGATT+GGG | - | Chr1:54516029-54516048 | MsG0180002992.01.T01:CDS | 25.0% |
! | TCATTTATATAGATTGGAGA+TGG | - | Chr1:54515272-54515291 | MsG0180002992.01.T01:intron | 25.0% |
! | TCCACTAAAATTAATATGGT+TGG | + | Chr1:54514542-54514561 | None:intergenic | 25.0% |
! | TTGTGTGATATATATGTTTG+TGG | - | Chr1:54515062-54515081 | MsG0180002992.01.T01:intron | 25.0% |
!! | ACCAACCATATTAATTTTAG+TGG | - | Chr1:54514538-54514557 | MsG0180002992.01.T01:CDS | 25.0% |
!!! | AACTATATGTTTTTTCATGC+CGG | + | Chr1:54514760-54514779 | None:intergenic | 25.0% |
!!! | AGTTTTGAGAAAAAAACGAT+CGG | + | Chr1:54514893-54514912 | None:intergenic | 25.0% |
!!! | TATTTTTGAAAGACACAAAG+GGG | - | Chr1:54514504-54514523 | MsG0180002992.01.T01:CDS | 25.0% |
AAAAGATGTGATGTAAATGG+GGG | + | Chr1:54514980-54514999 | None:intergenic | 30.0% | |
ATAAAAAAGAAGGTAAGAGG+TGG | - | Chr1:54515601-54515620 | MsG0180002992.01.T01:intron | 30.0% | |
CCAATCTAACACTTTGTAAA+AGG | + | Chr1:54514449-54514468 | None:intergenic | 30.0% | |
TCTAACACTTTGTAAAAGGT+TGG | + | Chr1:54514445-54514464 | None:intergenic | 30.0% | |
TGTAAGAAATAGGTCTATTG+TGG | - | Chr1:54515753-54515772 | MsG0180002992.01.T01:intron | 30.0% | |
TTACTATGAGATATTCATGG+AGG | + | Chr1:54514698-54514717 | None:intergenic | 30.0% | |
! | TTACCTTGTTTATGACTAGA+AGG | + | Chr1:54515164-54515183 | None:intergenic | 30.0% |
!! | AAGCTTTTCCTCTAAAGAAA+CGG | - | Chr1:54515308-54515327 | MsG0180002992.01.T01:intron | 30.0% |
!! | CCTTTTACAAAGTGTTAGAT+TGG | - | Chr1:54514446-54514465 | MsG0180002992.01.T01:CDS | 30.0% |
!!! | CTTTTTTACCTTGAAGTGTA+TGG | - | Chr1:54515034-54515053 | MsG0180002992.01.T01:intron | 30.0% |
!!! | GATGTGTCTTTTTTGTTAGT+AGG | - | Chr1:54515084-54515103 | MsG0180002992.01.T01:intron | 30.0% |
!!! | GTCTTTTTTGTTAGTAGGAA+TGG | - | Chr1:54515089-54515108 | MsG0180002992.01.T01:intron | 30.0% |
AAATTTCTTGCTTCTTGTGC+TGG | + | Chr1:54514328-54514347 | None:intergenic | 35.0% | |
ACAAACAATCAGTGATCTCA+TGG | - | Chr1:54515945-54515964 | MsG0180002992.01.T01:CDS | 35.0% | |
ATTGTCTTCACCATCAAACT+TGG | + | Chr1:54515842-54515861 | None:intergenic | 35.0% | |
CAATTACACCATACACTTCA+AGG | + | Chr1:54515045-54515064 | None:intergenic | 35.0% | |
CTCTATGTGAGCATCATTTA+GGG | - | Chr1:54515704-54515723 | MsG0180002992.01.T01:intron | 35.0% | |
GAAAAGCTAACCAAGTTTGA+TGG | - | Chr1:54515829-54515848 | MsG0180002992.01.T01:intron | 35.0% | |
GACCCATAACTTGATTTAAC+CGG | - | Chr1:54514738-54514757 | MsG0180002992.01.T01:intron | 35.0% | |
GCATGACAAGTGTAAGAAAT+AGG | - | Chr1:54515743-54515762 | MsG0180002992.01.T01:intron | 35.0% | |
GGAAGATCATAAAGAAGAAG+AGG | - | Chr1:54515441-54515460 | MsG0180002992.01.T01:intron | 35.0% | |
TAGTAATGAATGGGATGAAG+AGG | - | Chr1:54515420-54515439 | MsG0180002992.01.T01:intron | 35.0% | |
TCATAAAGAAGAAGAGGTAG+TGG | - | Chr1:54515447-54515466 | MsG0180002992.01.T01:intron | 35.0% | |
TCTCTATGTGAGCATCATTT+AGG | - | Chr1:54515703-54515722 | MsG0180002992.01.T01:intron | 35.0% | |
TTAGAGGAAAAGCTTTCTCT+CGG | + | Chr1:54515303-54515322 | None:intergenic | 35.0% | |
! | AAACGATCGGTTTAGATAAG+AGG | + | Chr1:54514880-54514899 | None:intergenic | 35.0% |
! | AACGATCGGTTTAGATAAGA+GGG | + | Chr1:54514879-54514898 | None:intergenic | 35.0% |
! | AGAGAGTAGAGTAAGCTTTT+CGG | + | Chr1:54514115-54514134 | None:intergenic | 35.0% |
! | AGAGGAAGCTTTGATATGAA+TGG | - | Chr1:54515331-54515350 | MsG0180002992.01.T01:intron | 35.0% |
! | ATGCCGGTTAAATCAAGTTA+TGG | + | Chr1:54514744-54514763 | None:intergenic | 35.0% |
! | GCACAAGAAGCAAGAAATTT+TGG | - | Chr1:54514328-54514347 | MsG0180002992.01.T01:CDS | 35.0% |
! | TCATGAGTGCAAGAAAGTTT+TGG | + | Chr1:54514203-54514222 | None:intergenic | 35.0% |
! | TGCCGGTTAAATCAAGTTAT+GGG | + | Chr1:54514743-54514762 | None:intergenic | 35.0% |
!!! | TGTCTTTCTTTGGTTTTACC+TGG | + | Chr1:54514659-54514678 | None:intergenic | 35.0% |
!!! | TTGGTTAGCTTTTCAAGAGA+TGG | + | Chr1:54515823-54515842 | None:intergenic | 35.0% |
AGAGAATAACCGACTAGTGT+TGG | + | Chr1:54515688-54515707 | None:intergenic | 40.0% | |
AGCATCATTTAGGGAAAGGA+AGG | - | Chr1:54515713-54515732 | MsG0180002992.01.T01:intron | 40.0% | |
AGGCCTTCTAGTCATAAACA+AGG | - | Chr1:54515158-54515177 | MsG0180002992.01.T01:CDS | 40.0% | |
CAGATCTCAACATGATCAAC+CGG | - | Chr1:54514135-54514154 | MsG0180002992.01.T01:three_prime_UTR | 40.0% | |
CTCTTCTTCGCGATAATCAT+CGG | + | Chr1:54515877-54515896 | None:intergenic | 40.0% | |
GAAGAGGATGAAGATTGGAA+TGG | - | Chr1:54515891-54515910 | MsG0180002992.01.T01:intron | 40.0% | |
GACAAAAGGGTAATGATACC+AGG | - | Chr1:54514638-54514657 | MsG0180002992.01.T01:CDS | 40.0% | |
TACTGCACTGTTATCTCTCT+CGG | - | Chr1:54514229-54514248 | MsG0180002992.01.T01:three_prime_UTR | 40.0% | |
TGAACTTGCACTCACGTATA+AGG | + | Chr1:54516080-54516099 | None:intergenic | 40.0% | |
TGTGAGCATCATTTAGGGAA+AGG | - | Chr1:54515709-54515728 | MsG0180002992.01.T01:intron | 40.0% | |
TGTTGTCAACCAACACTAGT+CGG | - | Chr1:54515676-54515695 | MsG0180002992.01.T01:intron | 40.0% | |
TTATGACTAGAAGGCCTTGA+AGG | + | Chr1:54515155-54515174 | None:intergenic | 40.0% | |
! | GGAGGTTCAGTTTGAGATAT+TGG | + | Chr1:54515802-54515821 | None:intergenic | 40.0% |
! | GTGATTTGCAGGTAGAAGAT+GGG | - | Chr1:54514593-54514612 | MsG0180002992.01.T01:CDS | 40.0% |
! | TGTGATTTGCAGGTAGAAGA+TGG | - | Chr1:54514592-54514611 | MsG0180002992.01.T01:CDS | 40.0% |
! | TTTCCTCTAAAGAAACGGAG+AGG | - | Chr1:54515313-54515332 | MsG0180002992.01.T01:intron | 40.0% |
!! | CGATCGATGAGTAGTTTGTT+GGG | - | Chr1:54515922-54515941 | MsG0180002992.01.T01:intron | 40.0% |
!!! | GTTAGCTTTTCAAGAGATGG+AGG | + | Chr1:54515820-54515839 | None:intergenic | 40.0% |
CGATGATTATCGCGAAGAAG+AGG | - | Chr1:54515875-54515894 | MsG0180002992.01.T01:intron | 45.0% | |
CTTCCTCTCCGTTTCTTTAG+AGG | + | Chr1:54515319-54515338 | None:intergenic | 45.0% | |
GAGTGCACAAACTTCAACTG+AGG | - | Chr1:54515121-54515140 | MsG0180002992.01.T01:CDS | 45.0% | |
GCGAAGAAGAGGATGAAGAT+TGG | - | Chr1:54515886-54515905 | MsG0180002992.01.T01:intron | 45.0% | |
GTCAAGGAAGGTGGACAAAA+GGG | - | Chr1:54514625-54514644 | MsG0180002992.01.T01:CDS | 45.0% | |
GTCGTGTTAATGGAAGAGGA+TGG | - | Chr1:54515650-54515669 | MsG0180002992.01.T01:CDS | 45.0% | |
GTGTTAATGGAAGAGGATGG+AGG | - | Chr1:54515653-54515672 | MsG0180002992.01.T01:CDS | 45.0% | |
TGCAGTCGTGTTAATGGAAG+AGG | - | Chr1:54515646-54515665 | MsG0180002992.01.T01:CDS | 45.0% | |
TGTCAAGGAAGGTGGACAAA+AGG | - | Chr1:54514624-54514643 | MsG0180002992.01.T01:CDS | 45.0% | |
! | CTGAGGTTTTCTCTCCTTCA+AGG | - | Chr1:54515138-54515157 | MsG0180002992.01.T01:CDS | 45.0% |
! | GCGATCGATGAGTAGTTTGT+TGG | - | Chr1:54515921-54515940 | MsG0180002992.01.T01:intron | 45.0% |
!! | TTGCTTCTTGTGCTGGCTTA+GGG | + | Chr1:54514321-54514340 | None:intergenic | 45.0% |
!!! | TATTTTTTTATGAAATTATA+AGG | - | Chr1:54514784-54514803 | MsG0180002992.01.T01:intron | 5.0% |
AGAGGTGGTGCACTTATGGA+AGG | - | Chr1:54515616-54515635 | MsG0180002992.01.T01:intron | 50.0% | |
CAACATGATCAACCGGTCAC+AGG | - | Chr1:54514142-54514161 | MsG0180002992.01.T01:three_prime_UTR | 50.0% | |
CAGCACAAGGGCAAATTGGT+AGG | + | Chr1:54514921-54514940 | None:intergenic | 50.0% | |
GATCGAGTGGAACCAAATGC+TGG | - | Chr1:54514953-54514972 | MsG0180002992.01.T01:CDS | 50.0% | |
GGTAAGAGGTGGTGCACTTA+TGG | - | Chr1:54515612-54515631 | MsG0180002992.01.T01:intron | 50.0% | |
GTAAATGGGGGACCAGCATT+TGG | + | Chr1:54514968-54514987 | None:intergenic | 50.0% | |
GTGCACTTATGGAAGGTTCG+CGG | - | Chr1:54515623-54515642 | MsG0180002992.01.T01:intron | 50.0% | |
TACCTGCTTGTGCAGCACAA+GGG | + | Chr1:54514933-54514952 | None:intergenic | 50.0% | |
TAGGGAATCATCACAGCCGT+TGG | + | Chr1:54514303-54514322 | None:intergenic | 50.0% | |
TGCAGGTAGAAGATGGGAGA+GGG | - | Chr1:54514599-54514618 | MsG0180002992.01.T01:CDS | 50.0% | |
TGTGCAGCACAAGGGCAAAT+TGG | + | Chr1:54514925-54514944 | None:intergenic | 50.0% | |
TTGCAGGTAGAAGATGGGAG+AGG | - | Chr1:54514598-54514617 | MsG0180002992.01.T01:CDS | 50.0% | |
! | TGTGTGTGCGTGTGATTTGC+AGG | - | Chr1:54514582-54514601 | MsG0180002992.01.T01:CDS | 50.0% |
!! | CTTGCTTCTTGTGCTGGCTT+AGG | + | Chr1:54514322-54514341 | None:intergenic | 50.0% |
AGTAGTCGATCAGACGGCTG+AGG | + | Chr1:54514260-54514279 | None:intergenic | 55.0% | |
ATCGACTACTCCCACCGATC+GGG | - | Chr1:54514270-54514289 | MsG0180002992.01.T01:three_prime_UTR | 55.0% | |
CATGATCAACCGGTCACAGG+TGG | - | Chr1:54514145-54514164 | MsG0180002992.01.T01:three_prime_UTR | 55.0% | |
CTACCTGCTTGTGCAGCACA+AGG | + | Chr1:54514934-54514953 | None:intergenic | 55.0% | |
GAATCATCACAGCCGTTGGC+TGG | + | Chr1:54514299-54514318 | None:intergenic | 55.0% | |
GATCGACTACTCCCACCGAT+CGG | - | Chr1:54514269-54514288 | MsG0180002992.01.T01:three_prime_UTR | 55.0% | |
GCACAAGCAGGTAGATCGAG+TGG | - | Chr1:54514940-54514959 | MsG0180002992.01.T01:CDS | 55.0% | |
GGTGGGAGTAGTCGATCAGA+CGG | + | Chr1:54514266-54514285 | None:intergenic | 55.0% | |
TCGCGGTGCAGTCGTGTTAA+TGG | - | Chr1:54515640-54515659 | MsG0180002992.01.T01:CDS | 55.0% | |
! | AGAGGGCATGTCAAGGAAGG+TGG | - | Chr1:54514616-54514635 | MsG0180002992.01.T01:CDS | 55.0% |
! | AGATGGGAGAGGGCATGTCA+AGG | - | Chr1:54514609-54514628 | MsG0180002992.01.T01:CDS | 55.0% |
CCGATCGGGAAACCAGCCAA+CGG | - | Chr1:54514284-54514303 | MsG0180002992.01.T01:exon | 60.0% | |
GATCAACCGGTCACAGGTGG+TGG | - | Chr1:54514148-54514167 | MsG0180002992.01.T01:three_prime_UTR | 60.0% | |
GTTGCACCACCACCTGTGAC+CGG | + | Chr1:54514157-54514176 | None:intergenic | 60.0% | |
TGCCCTTGTGCTGCACAAGC+AGG | - | Chr1:54514928-54514947 | MsG0180002992.01.T01:CDS | 60.0% | |
! | GGGAGAGGGCATGTCAAGGA+AGG | - | Chr1:54514613-54514632 | MsG0180002992.01.T01:CDS | 60.0% |
!! | CCGTTGGCTGGTTTCCCGAT+CGG | + | Chr1:54514287-54514306 | None:intergenic | 60.0% |
!! | TGGCTGGTTTCCCGATCGGT+GGG | + | Chr1:54514283-54514302 | None:intergenic | 60.0% |
!! | TTGGCTGGTTTCCCGATCGG+TGG | + | Chr1:54514284-54514303 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 54514104 | 54516181 | 54514104 | ID=MsG0180002992.01;Name=MsG0180002992.01 |
Chr1 | mRNA | 54514104 | 54516181 | 54514104 | ID=MsG0180002992.01.T01;Parent=MsG0180002992.01;Name=MsG0180002992.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.75|0.6|1|1|1|5|194|321 |
Chr1 | exon | 54514104 | 54514675 | 54514104 | ID=MsG0180002992.01.T01:exon:2905;Parent=MsG0180002992.01.T01 |
Chr1 | exon | 54514790 | 54515001 | 54514790 | ID=MsG0180002992.01.T01:exon:2904;Parent=MsG0180002992.01.T01 |
Chr1 | exon | 54515106 | 54515179 | 54515106 | ID=MsG0180002992.01.T01:exon:2903;Parent=MsG0180002992.01.T01 |
Chr1 | exon | 54515626 | 54515681 | 54515626 | ID=MsG0180002992.01.T01:exon:2902;Parent=MsG0180002992.01.T01 |
Chr1 | exon | 54515936 | 54516181 | 54515936 | ID=MsG0180002992.01.T01:exon:2901;Parent=MsG0180002992.01.T01 |
Chr1 | CDS | 54515936 | 54516181 | 54515936 | ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01 |
Chr1 | CDS | 54515626 | 54515681 | 54515626 | ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01 |
Chr1 | CDS | 54515106 | 54515179 | 54515106 | ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01 |
Chr1 | CDS | 54514790 | 54515001 | 54514790 | ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01 |
Chr1 | CDS | 54514298 | 54514675 | 54514298 | ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01 |
Chr1 | three_prime_UTR | 54514104 | 54514297 | 54514104 | ID=MsG0180002992.01.T01:three_prime_utr;Parent=MsG0180002992.01.T01 |
Gene Sequence |
Protein sequence |