AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002992.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002992.01.T01 MTR_1g054175 89.902 307 25 2 15 321 1 301 0.0 509
MsG0180002992.01.T01 MTR_1g054175 88.843 242 22 1 80 321 10 246 1.45e-137 390
MsG0180002992.01.T01 MTR_7g093350 48.503 334 130 11 12 321 23 338 5.47e-75 234
MsG0180002992.01.T01 MTR_7g093360 48.204 334 135 10 12 321 23 342 1.10e-72 228
MsG0180002992.01.T01 MTR_7g093350 50.385 260 96 9 80 321 3 247 1.07e-64 204
MsG0180002992.01.T01 MTR_7g093360 52.066 242 84 8 96 321 27 252 5.92e-64 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002992.01.T01 AT2G42040 54.630 108 21 3 203 310 163 242 1.56e-21 92.4

Find 76 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACAAGAAGCAAGAAATTT+TGG 0.142499 1:-54515935 MsG0180002992.01.T01:intron
TCTCTATGTGAGCATCATTT+AGG 0.194755 1:-54514560 MsG0180002992.01.T01:CDS
CTTCCTCTCCGTTTCTTTAG+AGG 0.209046 1:+54514947 None:intergenic
AGTACTAATCGCAAAATAAT+AGG 0.225839 1:-54514274 MsG0180002992.01.T01:three_prime_UTR
GGAGGTTCAGTTTGAGATAT+TGG 0.256335 1:+54514464 None:intergenic
CTTGCTTCTTGTGCTGGCTT+AGG 0.269170 1:+54515944 None:intergenic
CTCTATGTGAGCATCATTTA+GGG 0.282907 1:-54514559 MsG0180002992.01.T01:CDS
GGTAAGAGGTGGTGCACTTA+TGG 0.318134 1:-54514651 MsG0180002992.01.T01:CDS
TCGCGGTGCAGTCGTGTTAA+TGG 0.321151 1:-54514623 MsG0180002992.01.T01:CDS
GCATGACAAGTGTAAGAAAT+AGG 0.329001 1:-54514520 MsG0180002992.01.T01:CDS
TTGCTTCTTGTGCTGGCTTA+GGG 0.336473 1:+54515945 None:intergenic
TTACCTTGTTTATGACTAGA+AGG 0.355956 1:+54515102 None:intergenic
AAATTTCTTGCTTCTTGTGC+TGG 0.356796 1:+54515938 None:intergenic
GAAAAGCTAACCAAGTTTGA+TGG 0.358390 1:-54514434 MsG0180002992.01.T01:CDS
TCATGAGTGCAAGAAAGTTT+TGG 0.385868 1:+54516063 None:intergenic
TGAACTTGCACTCACGTATA+AGG 0.423080 1:+54514186 None:intergenic
GTACTAATCGCAAAATAATA+GGG 0.423307 1:-54514273 MsG0180002992.01.T01:three_prime_UTR
CTCTTCTTCGCGATAATCAT+CGG 0.437633 1:+54514389 None:intergenic
TATTTCATGTACTTCAGATT+GGG 0.439552 1:-54514234 MsG0180002992.01.T01:three_prime_UTR
ATCGACTACTCCCACCGATC+GGG 0.452207 1:-54515993 MsG0180002992.01.T01:CDS
CAGATCTCAACATGATCAAC+CGG 0.459291 1:-54516128 MsG0180002992.01.T01:CDS
TTATGACTAGAAGGCCTTGA+AGG 0.462959 1:+54515111 None:intergenic
GCGATCGATGAGTAGTTTGT+TGG 0.464541 1:-54514342 MsG0180002992.01.T01:CDS
ATTGTCTTCACCATCAAACT+TGG 0.466393 1:+54514424 None:intergenic
ATATTTCATGTACTTCAGAT+TGG 0.466810 1:-54514235 MsG0180002992.01.T01:three_prime_UTR
GCGAAGAAGAGGATGAAGAT+TGG 0.473786 1:-54514377 MsG0180002992.01.T01:CDS
TGTCAAGGAAGGTGGACAAA+AGG 0.483403 1:-54515639 MsG0180002992.01.T01:CDS
GGAAGATCATAAAGAAGAAG+AGG 0.484016 1:-54514822 MsG0180002992.01.T01:CDS
TACTGCACTGTTATCTCTCT+CGG 0.487895 1:-54516034 MsG0180002992.01.T01:CDS
GAATCATCACAGCCGTTGGC+TGG 0.490915 1:+54515967 None:intergenic
AGAGGAAGCTTTGATATGAA+TGG 0.496514 1:-54514932 MsG0180002992.01.T01:CDS
TGCAGTCGTGTTAATGGAAG+AGG 0.503807 1:-54514617 MsG0180002992.01.T01:CDS
TAGAGAAACAAAACAAAAGA+AGG 0.509554 1:-54514789 MsG0180002992.01.T01:intron
AGTGTTATGATAGTAATGAA+TGG 0.510545 1:-54514853 MsG0180002992.01.T01:CDS
TCATTTATATAGATTGGAGA+TGG 0.513170 1:-54514991 MsG0180002992.01.T01:intron
CGATCGATGAGTAGTTTGTT+GGG 0.513939 1:-54514341 MsG0180002992.01.T01:CDS
CGATGATTATCGCGAAGAAG+AGG 0.515105 1:-54514388 MsG0180002992.01.T01:CDS
TCATAAAGAAGAAGAGGTAG+TGG 0.518196 1:-54514816 MsG0180002992.01.T01:CDS
GTCAAGGAAGGTGGACAAAA+GGG 0.518519 1:-54515638 MsG0180002992.01.T01:CDS
TTGGCTGGTTTCCCGATCGG+TGG 0.518762 1:+54515982 None:intergenic
CCGTTGGCTGGTTTCCCGAT+CGG 0.519531 1:+54515979 None:intergenic
GATCGACTACTCCCACCGAT+CGG 0.531970 1:-54515994 MsG0180002992.01.T01:CDS
TTAGAGGAAAAGCTTTCTCT+CGG 0.536540 1:+54514963 None:intergenic
AGAGGGCATGTCAAGGAAGG+TGG 0.537277 1:-54515647 MsG0180002992.01.T01:CDS
GATCAACCGGTCACAGGTGG+TGG 0.541227 1:-54516115 MsG0180002992.01.T01:CDS
ACAAACAATCAGTGATCTCA+TGG 0.542035 1:-54514318 MsG0180002992.01.T01:CDS
TGGCTGGTTTCCCGATCGGT+GGG 0.543310 1:+54515983 None:intergenic
AGCATCATTTAGGGAAAGGA+AGG 0.554136 1:-54514550 MsG0180002992.01.T01:CDS
GGGAGAGGGCATGTCAAGGA+AGG 0.558804 1:-54515650 MsG0180002992.01.T01:CDS
TGTGATTTGCAGGTAGAAGA+TGG 0.559441 1:-54515671 MsG0180002992.01.T01:intron
TAGTAATGAATGGGATGAAG+AGG 0.560430 1:-54514843 MsG0180002992.01.T01:CDS
GTGTTATGATAGTAATGAAT+GGG 0.561410 1:-54514852 MsG0180002992.01.T01:CDS
TGTAAGAAATAGGTCTATTG+TGG 0.562415 1:-54514510 MsG0180002992.01.T01:CDS
CAACATGATCAACCGGTCAC+AGG 0.565198 1:-54516121 MsG0180002992.01.T01:CDS
TGTGAGCATCATTTAGGGAA+AGG 0.571914 1:-54514554 MsG0180002992.01.T01:CDS
GAGTGCACAAACTTCAACTG+AGG 0.575039 1:-54515142 MsG0180002992.01.T01:CDS
GTGATTTGCAGGTAGAAGAT+GGG 0.581315 1:-54515670 MsG0180002992.01.T01:intron
AGTAGTCGATCAGACGGCTG+AGG 0.594515 1:+54516006 None:intergenic
GTTGCACCACCACCTGTGAC+CGG 0.601392 1:+54516109 None:intergenic
TTGCAGGTAGAAGATGGGAG+AGG 0.602099 1:-54515665 MsG0180002992.01.T01:intron
GACAAAAGGGTAATGATACC+AGG 0.602132 1:-54515625 MsG0180002992.01.T01:intron
GAAGAGGATGAAGATTGGAA+TGG 0.603128 1:-54514372 MsG0180002992.01.T01:CDS
GTGTTAATGGAAGAGGATGG+AGG 0.605411 1:-54514610 MsG0180002992.01.T01:CDS
GTGCACTTATGGAAGGTTCG+CGG 0.606666 1:-54514640 MsG0180002992.01.T01:CDS
AGAGAATAACCGACTAGTGT+TGG 0.608366 1:+54514578 None:intergenic
TGCAGGTAGAAGATGGGAGA+GGG 0.613399 1:-54515664 MsG0180002992.01.T01:intron
AGATGGGAGAGGGCATGTCA+AGG 0.620023 1:-54515654 MsG0180002992.01.T01:CDS
AGAGGTGGTGCACTTATGGA+AGG 0.620926 1:-54514647 MsG0180002992.01.T01:CDS
TAGGGAATCATCACAGCCGT+TGG 0.624031 1:+54515963 None:intergenic
TGTTGTCAACCAACACTAGT+CGG 0.655661 1:-54514587 MsG0180002992.01.T01:CDS
AGGCCTTCTAGTCATAAACA+AGG 0.659693 1:-54515105 MsG0180002992.01.T01:intron
CATGATCAACCGGTCACAGG+TGG 0.668404 1:-54516118 MsG0180002992.01.T01:CDS
TTTCCTCTAAAGAAACGGAG+AGG 0.668761 1:-54514950 MsG0180002992.01.T01:CDS
GGTGGGAGTAGTCGATCAGA+CGG 0.671530 1:+54516000 None:intergenic
CCGATCGGGAAACCAGCCAA+CGG 0.672458 1:-54515979 MsG0180002992.01.T01:CDS
GTCGTGTTAATGGAAGAGGA+TGG 0.680449 1:-54514613 MsG0180002992.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTTTTTTTTTTT+GGG - Chr1:54514388-54514407 MsG0180002992.01.T01:CDS 0.0%
!!! TTTAAATTTTTTTTTTTTTT+TGG - Chr1:54514387-54514406 MsG0180002992.01.T01:CDS 0.0%
!! CAAAATTAAAATAAAAAAGA+AGG - Chr1:54515591-54515610 MsG0180002992.01.T01:intron 10.0%
!! TATTAATGTGTTATATTTAT+TGG - Chr1:54515186-54515205 MsG0180002992.01.T01:intron 10.0%
!!! AATTTTGTAAACATTATATA+AGG + Chr1:54515578-54515597 None:intergenic 10.0%
!!! ATTTTATTTCACATTCATAA+AGG - Chr1:54514476-54514495 MsG0180002992.01.T01:CDS 15.0%
!!! TTTTATTTCACATTCATAAA+GGG - Chr1:54514477-54514496 MsG0180002992.01.T01:CDS 15.0%
!! AAAAAAAGATGTGATGTAAA+TGG + Chr1:54514983-54515002 None:intergenic 20.0%
!! AAAAAAGATGTGATGTAAAT+GGG + Chr1:54514982-54515001 None:intergenic 20.0%
!! AAAATAAAAAAGAAGGTAAG+AGG - Chr1:54515598-54515617 MsG0180002992.01.T01:intron 20.0%
!! AATAATTTCATGTCTTTCTT+TGG + Chr1:54514669-54514688 None:intergenic 20.0%
!! GAATATCTCATAGTAAAAAA+AGG - Chr1:54514702-54514721 MsG0180002992.01.T01:intron 20.0%
!! TTTATTTCACATTCATAAAG+GGG - Chr1:54514478-54514497 MsG0180002992.01.T01:CDS 20.0%
!!! AATATTTTTGAAAGACACAA+AGG - Chr1:54514502-54514521 MsG0180002992.01.T01:CDS 20.0%
!!! ATATTTTTGAAAGACACAAA+GGG - Chr1:54514503-54514522 MsG0180002992.01.T01:CDS 20.0%
!!! CTATTGTCATTTATATAGAT+TGG - Chr1:54515266-54515285 MsG0180002992.01.T01:intron 20.0%
!!! TTTTTACTATGAGATATTCA+TGG + Chr1:54514701-54514720 None:intergenic 20.0%
! AAAAAGATGTGATGTAAATG+GGG + Chr1:54514981-54515000 None:intergenic 25.0%
! ACTTCAAGGTAAAAAAGAAA+AGG + Chr1:54515031-54515050 None:intergenic 25.0%
! AGGATCCACTAAAATTAATA+TGG + Chr1:54514546-54514565 None:intergenic 25.0%
! AGTACTAATCGCAAAATAAT+AGG - Chr1:54515989-54516008 MsG0180002992.01.T01:CDS 25.0%
! AGTGTTATGATAGTAATGAA+TGG - Chr1:54515410-54515429 MsG0180002992.01.T01:intron 25.0%
! ATATTTCATGTACTTCAGAT+TGG - Chr1:54516028-54516047 MsG0180002992.01.T01:CDS 25.0%
! CACAAAAAAGAAACATACAT+AGG + Chr1:54514566-54514585 None:intergenic 25.0%
! GTAAAAAAAGGTGAAAAACA+TGG - Chr1:54514714-54514733 MsG0180002992.01.T01:intron 25.0%
! GTACTAATCGCAAAATAATA+GGG - Chr1:54515990-54516009 MsG0180002992.01.T01:CDS 25.0%
! GTGTTATGATAGTAATGAAT+GGG - Chr1:54515411-54515430 MsG0180002992.01.T01:intron 25.0%
! TAGAGAAACAAAACAAAAGA+AGG - Chr1:54515474-54515493 MsG0180002992.01.T01:intron 25.0%
! TATTTCATGTACTTCAGATT+GGG - Chr1:54516029-54516048 MsG0180002992.01.T01:CDS 25.0%
! TCATTTATATAGATTGGAGA+TGG - Chr1:54515272-54515291 MsG0180002992.01.T01:intron 25.0%
! TCCACTAAAATTAATATGGT+TGG + Chr1:54514542-54514561 None:intergenic 25.0%
! TTGTGTGATATATATGTTTG+TGG - Chr1:54515062-54515081 MsG0180002992.01.T01:intron 25.0%
!! ACCAACCATATTAATTTTAG+TGG - Chr1:54514538-54514557 MsG0180002992.01.T01:CDS 25.0%
!!! AACTATATGTTTTTTCATGC+CGG + Chr1:54514760-54514779 None:intergenic 25.0%
!!! AGTTTTGAGAAAAAAACGAT+CGG + Chr1:54514893-54514912 None:intergenic 25.0%
!!! TATTTTTGAAAGACACAAAG+GGG - Chr1:54514504-54514523 MsG0180002992.01.T01:CDS 25.0%
AAAAGATGTGATGTAAATGG+GGG + Chr1:54514980-54514999 None:intergenic 30.0%
ATAAAAAAGAAGGTAAGAGG+TGG - Chr1:54515601-54515620 MsG0180002992.01.T01:intron 30.0%
CCAATCTAACACTTTGTAAA+AGG + Chr1:54514449-54514468 None:intergenic 30.0%
TCTAACACTTTGTAAAAGGT+TGG + Chr1:54514445-54514464 None:intergenic 30.0%
TGTAAGAAATAGGTCTATTG+TGG - Chr1:54515753-54515772 MsG0180002992.01.T01:intron 30.0%
TTACTATGAGATATTCATGG+AGG + Chr1:54514698-54514717 None:intergenic 30.0%
! TTACCTTGTTTATGACTAGA+AGG + Chr1:54515164-54515183 None:intergenic 30.0%
!! AAGCTTTTCCTCTAAAGAAA+CGG - Chr1:54515308-54515327 MsG0180002992.01.T01:intron 30.0%
!! CCTTTTACAAAGTGTTAGAT+TGG - Chr1:54514446-54514465 MsG0180002992.01.T01:CDS 30.0%
!!! CTTTTTTACCTTGAAGTGTA+TGG - Chr1:54515034-54515053 MsG0180002992.01.T01:intron 30.0%
!!! GATGTGTCTTTTTTGTTAGT+AGG - Chr1:54515084-54515103 MsG0180002992.01.T01:intron 30.0%
!!! GTCTTTTTTGTTAGTAGGAA+TGG - Chr1:54515089-54515108 MsG0180002992.01.T01:intron 30.0%
AAATTTCTTGCTTCTTGTGC+TGG + Chr1:54514328-54514347 None:intergenic 35.0%
ACAAACAATCAGTGATCTCA+TGG - Chr1:54515945-54515964 MsG0180002992.01.T01:CDS 35.0%
ATTGTCTTCACCATCAAACT+TGG + Chr1:54515842-54515861 None:intergenic 35.0%
CAATTACACCATACACTTCA+AGG + Chr1:54515045-54515064 None:intergenic 35.0%
CTCTATGTGAGCATCATTTA+GGG - Chr1:54515704-54515723 MsG0180002992.01.T01:intron 35.0%
GAAAAGCTAACCAAGTTTGA+TGG - Chr1:54515829-54515848 MsG0180002992.01.T01:intron 35.0%
GACCCATAACTTGATTTAAC+CGG - Chr1:54514738-54514757 MsG0180002992.01.T01:intron 35.0%
GCATGACAAGTGTAAGAAAT+AGG - Chr1:54515743-54515762 MsG0180002992.01.T01:intron 35.0%
GGAAGATCATAAAGAAGAAG+AGG - Chr1:54515441-54515460 MsG0180002992.01.T01:intron 35.0%
TAGTAATGAATGGGATGAAG+AGG - Chr1:54515420-54515439 MsG0180002992.01.T01:intron 35.0%
TCATAAAGAAGAAGAGGTAG+TGG - Chr1:54515447-54515466 MsG0180002992.01.T01:intron 35.0%
TCTCTATGTGAGCATCATTT+AGG - Chr1:54515703-54515722 MsG0180002992.01.T01:intron 35.0%
TTAGAGGAAAAGCTTTCTCT+CGG + Chr1:54515303-54515322 None:intergenic 35.0%
! AAACGATCGGTTTAGATAAG+AGG + Chr1:54514880-54514899 None:intergenic 35.0%
! AACGATCGGTTTAGATAAGA+GGG + Chr1:54514879-54514898 None:intergenic 35.0%
! AGAGAGTAGAGTAAGCTTTT+CGG + Chr1:54514115-54514134 None:intergenic 35.0%
! AGAGGAAGCTTTGATATGAA+TGG - Chr1:54515331-54515350 MsG0180002992.01.T01:intron 35.0%
! ATGCCGGTTAAATCAAGTTA+TGG + Chr1:54514744-54514763 None:intergenic 35.0%
! GCACAAGAAGCAAGAAATTT+TGG - Chr1:54514328-54514347 MsG0180002992.01.T01:CDS 35.0%
! TCATGAGTGCAAGAAAGTTT+TGG + Chr1:54514203-54514222 None:intergenic 35.0%
! TGCCGGTTAAATCAAGTTAT+GGG + Chr1:54514743-54514762 None:intergenic 35.0%
!!! TGTCTTTCTTTGGTTTTACC+TGG + Chr1:54514659-54514678 None:intergenic 35.0%
!!! TTGGTTAGCTTTTCAAGAGA+TGG + Chr1:54515823-54515842 None:intergenic 35.0%
AGAGAATAACCGACTAGTGT+TGG + Chr1:54515688-54515707 None:intergenic 40.0%
AGCATCATTTAGGGAAAGGA+AGG - Chr1:54515713-54515732 MsG0180002992.01.T01:intron 40.0%
AGGCCTTCTAGTCATAAACA+AGG - Chr1:54515158-54515177 MsG0180002992.01.T01:CDS 40.0%
CAGATCTCAACATGATCAAC+CGG - Chr1:54514135-54514154 MsG0180002992.01.T01:three_prime_UTR 40.0%
CTCTTCTTCGCGATAATCAT+CGG + Chr1:54515877-54515896 None:intergenic 40.0%
GAAGAGGATGAAGATTGGAA+TGG - Chr1:54515891-54515910 MsG0180002992.01.T01:intron 40.0%
GACAAAAGGGTAATGATACC+AGG - Chr1:54514638-54514657 MsG0180002992.01.T01:CDS 40.0%
TACTGCACTGTTATCTCTCT+CGG - Chr1:54514229-54514248 MsG0180002992.01.T01:three_prime_UTR 40.0%
TGAACTTGCACTCACGTATA+AGG + Chr1:54516080-54516099 None:intergenic 40.0%
TGTGAGCATCATTTAGGGAA+AGG - Chr1:54515709-54515728 MsG0180002992.01.T01:intron 40.0%
TGTTGTCAACCAACACTAGT+CGG - Chr1:54515676-54515695 MsG0180002992.01.T01:intron 40.0%
TTATGACTAGAAGGCCTTGA+AGG + Chr1:54515155-54515174 None:intergenic 40.0%
! GGAGGTTCAGTTTGAGATAT+TGG + Chr1:54515802-54515821 None:intergenic 40.0%
! GTGATTTGCAGGTAGAAGAT+GGG - Chr1:54514593-54514612 MsG0180002992.01.T01:CDS 40.0%
! TGTGATTTGCAGGTAGAAGA+TGG - Chr1:54514592-54514611 MsG0180002992.01.T01:CDS 40.0%
! TTTCCTCTAAAGAAACGGAG+AGG - Chr1:54515313-54515332 MsG0180002992.01.T01:intron 40.0%
!! CGATCGATGAGTAGTTTGTT+GGG - Chr1:54515922-54515941 MsG0180002992.01.T01:intron 40.0%
!!! GTTAGCTTTTCAAGAGATGG+AGG + Chr1:54515820-54515839 None:intergenic 40.0%
CGATGATTATCGCGAAGAAG+AGG - Chr1:54515875-54515894 MsG0180002992.01.T01:intron 45.0%
CTTCCTCTCCGTTTCTTTAG+AGG + Chr1:54515319-54515338 None:intergenic 45.0%
GAGTGCACAAACTTCAACTG+AGG - Chr1:54515121-54515140 MsG0180002992.01.T01:CDS 45.0%
GCGAAGAAGAGGATGAAGAT+TGG - Chr1:54515886-54515905 MsG0180002992.01.T01:intron 45.0%
GTCAAGGAAGGTGGACAAAA+GGG - Chr1:54514625-54514644 MsG0180002992.01.T01:CDS 45.0%
GTCGTGTTAATGGAAGAGGA+TGG - Chr1:54515650-54515669 MsG0180002992.01.T01:CDS 45.0%
GTGTTAATGGAAGAGGATGG+AGG - Chr1:54515653-54515672 MsG0180002992.01.T01:CDS 45.0%
TGCAGTCGTGTTAATGGAAG+AGG - Chr1:54515646-54515665 MsG0180002992.01.T01:CDS 45.0%
TGTCAAGGAAGGTGGACAAA+AGG - Chr1:54514624-54514643 MsG0180002992.01.T01:CDS 45.0%
! CTGAGGTTTTCTCTCCTTCA+AGG - Chr1:54515138-54515157 MsG0180002992.01.T01:CDS 45.0%
! GCGATCGATGAGTAGTTTGT+TGG - Chr1:54515921-54515940 MsG0180002992.01.T01:intron 45.0%
!! TTGCTTCTTGTGCTGGCTTA+GGG + Chr1:54514321-54514340 None:intergenic 45.0%
!!! TATTTTTTTATGAAATTATA+AGG - Chr1:54514784-54514803 MsG0180002992.01.T01:intron 5.0%
AGAGGTGGTGCACTTATGGA+AGG - Chr1:54515616-54515635 MsG0180002992.01.T01:intron 50.0%
CAACATGATCAACCGGTCAC+AGG - Chr1:54514142-54514161 MsG0180002992.01.T01:three_prime_UTR 50.0%
CAGCACAAGGGCAAATTGGT+AGG + Chr1:54514921-54514940 None:intergenic 50.0%
GATCGAGTGGAACCAAATGC+TGG - Chr1:54514953-54514972 MsG0180002992.01.T01:CDS 50.0%
GGTAAGAGGTGGTGCACTTA+TGG - Chr1:54515612-54515631 MsG0180002992.01.T01:intron 50.0%
GTAAATGGGGGACCAGCATT+TGG + Chr1:54514968-54514987 None:intergenic 50.0%
GTGCACTTATGGAAGGTTCG+CGG - Chr1:54515623-54515642 MsG0180002992.01.T01:intron 50.0%
TACCTGCTTGTGCAGCACAA+GGG + Chr1:54514933-54514952 None:intergenic 50.0%
TAGGGAATCATCACAGCCGT+TGG + Chr1:54514303-54514322 None:intergenic 50.0%
TGCAGGTAGAAGATGGGAGA+GGG - Chr1:54514599-54514618 MsG0180002992.01.T01:CDS 50.0%
TGTGCAGCACAAGGGCAAAT+TGG + Chr1:54514925-54514944 None:intergenic 50.0%
TTGCAGGTAGAAGATGGGAG+AGG - Chr1:54514598-54514617 MsG0180002992.01.T01:CDS 50.0%
! TGTGTGTGCGTGTGATTTGC+AGG - Chr1:54514582-54514601 MsG0180002992.01.T01:CDS 50.0%
!! CTTGCTTCTTGTGCTGGCTT+AGG + Chr1:54514322-54514341 None:intergenic 50.0%
AGTAGTCGATCAGACGGCTG+AGG + Chr1:54514260-54514279 None:intergenic 55.0%
ATCGACTACTCCCACCGATC+GGG - Chr1:54514270-54514289 MsG0180002992.01.T01:three_prime_UTR 55.0%
CATGATCAACCGGTCACAGG+TGG - Chr1:54514145-54514164 MsG0180002992.01.T01:three_prime_UTR 55.0%
CTACCTGCTTGTGCAGCACA+AGG + Chr1:54514934-54514953 None:intergenic 55.0%
GAATCATCACAGCCGTTGGC+TGG + Chr1:54514299-54514318 None:intergenic 55.0%
GATCGACTACTCCCACCGAT+CGG - Chr1:54514269-54514288 MsG0180002992.01.T01:three_prime_UTR 55.0%
GCACAAGCAGGTAGATCGAG+TGG - Chr1:54514940-54514959 MsG0180002992.01.T01:CDS 55.0%
GGTGGGAGTAGTCGATCAGA+CGG + Chr1:54514266-54514285 None:intergenic 55.0%
TCGCGGTGCAGTCGTGTTAA+TGG - Chr1:54515640-54515659 MsG0180002992.01.T01:CDS 55.0%
! AGAGGGCATGTCAAGGAAGG+TGG - Chr1:54514616-54514635 MsG0180002992.01.T01:CDS 55.0%
! AGATGGGAGAGGGCATGTCA+AGG - Chr1:54514609-54514628 MsG0180002992.01.T01:CDS 55.0%
CCGATCGGGAAACCAGCCAA+CGG - Chr1:54514284-54514303 MsG0180002992.01.T01:exon 60.0%
GATCAACCGGTCACAGGTGG+TGG - Chr1:54514148-54514167 MsG0180002992.01.T01:three_prime_UTR 60.0%
GTTGCACCACCACCTGTGAC+CGG + Chr1:54514157-54514176 None:intergenic 60.0%
TGCCCTTGTGCTGCACAAGC+AGG - Chr1:54514928-54514947 MsG0180002992.01.T01:CDS 60.0%
! GGGAGAGGGCATGTCAAGGA+AGG - Chr1:54514613-54514632 MsG0180002992.01.T01:CDS 60.0%
!! CCGTTGGCTGGTTTCCCGAT+CGG + Chr1:54514287-54514306 None:intergenic 60.0%
!! TGGCTGGTTTCCCGATCGGT+GGG + Chr1:54514283-54514302 None:intergenic 60.0%
!! TTGGCTGGTTTCCCGATCGG+TGG + Chr1:54514284-54514303 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 54514104 54516181 54514104 ID=MsG0180002992.01;Name=MsG0180002992.01
Chr1 mRNA 54514104 54516181 54514104 ID=MsG0180002992.01.T01;Parent=MsG0180002992.01;Name=MsG0180002992.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.75|0.6|1|1|1|5|194|321
Chr1 exon 54514104 54514675 54514104 ID=MsG0180002992.01.T01:exon:2905;Parent=MsG0180002992.01.T01
Chr1 exon 54514790 54515001 54514790 ID=MsG0180002992.01.T01:exon:2904;Parent=MsG0180002992.01.T01
Chr1 exon 54515106 54515179 54515106 ID=MsG0180002992.01.T01:exon:2903;Parent=MsG0180002992.01.T01
Chr1 exon 54515626 54515681 54515626 ID=MsG0180002992.01.T01:exon:2902;Parent=MsG0180002992.01.T01
Chr1 exon 54515936 54516181 54515936 ID=MsG0180002992.01.T01:exon:2901;Parent=MsG0180002992.01.T01
Chr1 CDS 54515936 54516181 54515936 ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01
Chr1 CDS 54515626 54515681 54515626 ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01
Chr1 CDS 54515106 54515179 54515106 ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01
Chr1 CDS 54514790 54515001 54514790 ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01
Chr1 CDS 54514298 54514675 54514298 ID=MsG0180002992.01.T01:cds;Parent=MsG0180002992.01.T01
Chr1 three_prime_UTR 54514104 54514297 54514104 ID=MsG0180002992.01.T01:three_prime_utr;Parent=MsG0180002992.01.T01
Gene Sequence

>MsG0180002992.01.T01

ATGAGGATCCGAAAAGCTTACTCTACTCTCTCAGATCTCAACATGATCAACCGGTCACAGGTGGTGGTGCAACTCAACGATGCTTCAACTACATCACCAAAACTTTCTTGCACTCATGACTTAGCTACTGCACTGTTATCTCTCTCGGATCATCCTCAGCCGTCTGATCGACTACTCCCACCGATCGGGAAACCAGCCAACGGCTGTGATGATTCCCTAAGCCAGCACAAGAAGCAAGAAATTTTGGTAGAAGATGGGAGAGGGCATGTCAAGGAAGGTGGACAAAAGGGTAATGATACCAGGAATGGAAGCATCTTGAGTGCACAAACTTCAACTGAGGTTTTCTCTCCTTCAAGGCCTTCTAGTCATAAACAAGATTGGAGATGGAACGACCGAGAGAAAGCTTTTCCTCTAAAGAAACGGAGAGGAAGCTTTGATATGAATGGCAACAACGATAACAATAATGATACAAAGAAGAAGATGAAGACAAATACGAAAAAGAAGTGTTATGATAGTAATGAATGGGATGAAGAGGAAGATCATAAAGAAGAAGAGGTAGTGGTCGTTAGAGAAACAAAACAAAAGAAGAAGGTAAGAGGTGGTGCACTTATGGAAGGTTCGCGGTGCAGTCGTGTTAATGGAAGAGGATGGAGGTGTTGTCAACCAACACTAGTCGGTTATTCTCTATGTGAGCATCATTTAGGGAAAGGAAGGTTGAGAAGCATGACAAGTGTAAGAAATAGGTCTATTGTGGCTGAAACAAGTTCTATTGAAAAGCCAATATCTCAAACTGAACCTCCATCTCTTGAAAAGCTAACCAAGTTTGATGGTGAAGACAATGATGAGAAGAAGCCGATGATTATCGCGAAGAAGAGGATGAAGATTGGAATGGTGAAAGCGCGATCGATGAGTAGTTTGTTGGGACAAACAATCAGTGATCTCATGGTAGCTGAGAATAACAAGTAA

Protein sequence

>MsG0180002992.01.T01

MRIRKAYSTLSDLNMINRSQVVVQLNDASTTSPKLSCTHDLATALLSLSDHPQPSDRLLPPIGKPANGCDDSLSQHKKQEILVEDGRGHVKEGGQKGNDTRNGSILSAQTSTEVFSPSRPSSHKQDWRWNDREKAFPLKKRRGSFDMNGNNDNNNDTKKKMKTNTKKKCYDSNEWDEEEDHKEEEVVVVRETKQKKKVRGGALMEGSRCSRVNGRGWRCCQPTLVGYSLCEHHLGKGRLRSMTSVRNRSIVAETSSIEKPISQTEPPSLEKLTKFDGEDNDEKKPMIIAKKRMKIGMVKARSMSSLLGQTISDLMVAENNK*