Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033926.01.T01 | XP_013452539.2 | 96.078 | 510 | 17 | 1 | 1 | 510 | 122 | 628 | 0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033926.01.T01 | A0A396HH98 | 96.078 | 510 | 17 | 1 | 1 | 510 | 122 | 628 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048185.01 | MsG0680033926.01 | -0.805728 | 1.160351e-49 | 6.185224e-47 |
| MsG0080048968.01 | MsG0680033926.01 | 0.819789 | 9.655560e-53 | 7.503844e-50 |
| MsG0180000611.01 | MsG0680033926.01 | 0.835707 | 1.434560e-56 | 1.768551e-53 |
| MsG0180000821.01 | MsG0680033926.01 | 0.812404 | 4.311875e-51 | 2.739273e-48 |
| MsG0180001311.01 | MsG0680033926.01 | 0.838856 | 2.242377e-57 | 3.041997e-54 |
| MsG0180001712.01 | MsG0680033926.01 | 0.808071 | 3.708146e-50 | 2.099801e-47 |
| MsG0180002100.01 | MsG0680033926.01 | 0.810259 | 1.260048e-50 | 7.559605e-48 |
| MsG0180002140.01 | MsG0680033926.01 | 0.807024 | 6.184845e-50 | 3.408003e-47 |
| MsG0180002992.01 | MsG0680033926.01 | 0.841661 | 4.149585e-58 | 6.139474e-55 |
| MsG0180003379.01 | MsG0680033926.01 | 0.817025 | 4.084084e-52 | 2.940901e-49 |
| MsG0180003807.01 | MsG0680033926.01 | 0.802673 | 5.017623e-49 | 2.472581e-46 |
| MsG0180004272.01 | MsG0680033926.01 | 0.801495 | 8.765024e-49 | 4.191955e-46 |
| MsG0180004385.01 | MsG0680033926.01 | 0.803632 | 3.178230e-49 | 1.605085e-46 |
| MsG0180004684.01 | MsG0680033926.01 | 0.864629 | 1.060096e-64 | 3.351450e-61 |
| MsG0180005106.01 | MsG0680033926.01 | 0.811743 | 6.010524e-51 | 3.750602e-48 |
| MsG0180005268.01 | MsG0680033926.01 | 0.850082 | 2.136886e-60 | 4.137360e-57 |
| MsG0180005787.01 | MsG0680033926.01 | 0.806912 | 6.532845e-50 | 3.589284e-47 |
| MsG0180006025.01 | MsG0680033926.01 | 0.850307 | 1.847873e-60 | 3.604225e-57 |
| MsG0180006096.01 | MsG0680033926.01 | 0.800729 | 1.257462e-48 | 5.898286e-46 |
| MsG0180006104.01 | MsG0680033926.01 | 0.802432 | 5.626879e-49 | 2.755981e-46 |
| MsG0280006302.01 | MsG0680033926.01 | -0.821158 | 4.683760e-53 | 3.781079e-50 |
| MsG0280010900.01 | MsG0680033926.01 | 0.800542 | 1.372461e-48 | 6.407368e-46 |
| MsG0280011043.01 | MsG0680033926.01 | 0.803846 | 2.868420e-49 | 1.456716e-46 |
| MsG0280011376.01 | MsG0680033926.01 | 0.801746 | 7.783634e-49 | 3.746210e-46 |
| MsG0380012160.01 | MsG0680033926.01 | 0.810610 | 1.058061e-50 | 6.407180e-48 |
| MsG0380012187.01 | MsG0680033926.01 | 0.818850 | 1.580903e-52 | 1.196954e-49 |
| MsG0380013853.01 | MsG0680033926.01 | 0.813146 | 2.967067e-51 | 1.922162e-48 |
| MsG0380014866.01 | MsG0680033926.01 | 0.806190 | 9.276154e-50 | 5.003304e-47 |
| MsG0680031459.01 | MsG0680033926.01 | 0.834786 | 2.449900e-56 | 2.937463e-53 |
| MsG0680031597.01 | MsG0680033926.01 | -0.819691 | 1.016815e-52 | 7.879964e-50 |
| MsG0680031805.01 | MsG0680033926.01 | -0.803356 | 3.624442e-49 | 1.817457e-46 |
| MsG0680032015.01 | MsG0680033926.01 | 0.825512 | 4.502580e-54 | 4.112482e-51 |
| MsG0680033465.01 | MsG0680033926.01 | 0.800425 | 1.450320e-48 | 6.751032e-46 |
| MsG0680033926.01 | MsG0680034235.01 | 0.806590 | 7.640025e-50 | 4.162845e-47 |
| MsG0680033926.01 | MsG0680034476.01 | 0.840913 | 6.527769e-58 | 9.436735e-55 |
| MsG0680033926.01 | MsG0680035854.01 | 0.815718 | 8.008925e-52 | 5.564531e-49 |
| MsG0680033926.01 | MsG0780035937.01 | 0.812902 | 3.355163e-51 | 2.159536e-48 |
| MsG0680033926.01 | MsG0780036117.01 | 0.800663 | 1.296505e-48 | 6.071601e-46 |
| MsG0680033926.01 | MsG0780036630.01 | 0.802826 | 4.665972e-49 | 2.308533e-46 |
| MsG0680033926.01 | MsG0780036633.01 | 0.806045 | 9.955466e-50 | 5.349638e-47 |
| MsG0680033926.01 | MsG0780036845.01 | 0.805894 | 1.070794e-49 | 5.731889e-47 |
| MsG0680033926.01 | MsG0780038644.01 | 0.806256 | 8.984945e-50 | 4.854353e-47 |
| MsG0680033926.01 | MsG0780039828.01 | 0.834231 | 3.377365e-56 | 3.982927e-53 |
| MsG0680033926.01 | MsG0780040375.01 | -0.853453 | 2.365622e-61 | 5.114196e-58 |
| MsG0680033926.01 | MsG0780040418.01 | 0.827159 | 1.824547e-54 | 1.747150e-51 |
| MsG0680033926.01 | MsG0780040424.01 | 0.814436 | 1.542016e-51 | 1.034656e-48 |
| MsG0680033926.01 | MsG0780040591.01 | 0.812008 | 5.261591e-51 | 3.306717e-48 |
| MsG0680033926.01 | MsG0780040758.01 | 0.838372 | 2.989826e-57 | 3.996528e-54 |
| MsG0680033926.01 | MsG0780041210.01 | 0.803391 | 3.565312e-49 | 1.789444e-46 |
| MsG0680033926.01 | MsG0780041258.01 | 0.806334 | 8.653656e-50 | 4.684464e-47 |
| MsG0680033926.01 | MsG0780041671.01 | 0.818465 | 1.932743e-52 | 1.447935e-49 |
| MsG0680033926.01 | MsG0880042053.01 | 0.804008 | 2.655014e-49 | 1.353913e-46 |
| MsG0680033926.01 | MsG0880042399.01 | -0.805357 | 1.388096e-49 | 7.328597e-47 |
| MsG0680033926.01 | MsG0880042612.01 | 0.801226 | 9.952059e-49 | 4.727363e-46 |
| MsG0680033926.01 | MsG0880043162.01 | 0.803985 | 2.683574e-49 | 1.367725e-46 |
| MsG0680033926.01 | MsG0880043194.01 | 0.839824 | 1.257568e-57 | 1.757454e-54 |
| MsG0680033926.01 | MsG0880045329.01 | 0.863813 | 1.903857e-64 | 5.847749e-61 |
| MsG0680033926.01 | MsG0880045756.01 | 0.817404 | 3.356583e-52 | 2.442183e-49 |
| MsG0680033926.01 | MsG0880045803.01 | 0.806594 | 7.624683e-50 | 4.154879e-47 |
| MsG0680033926.01 | MsG0880046068.01 | 0.810749 | 9.873444e-51 | 6.001376e-48 |
| MsG0680033926.01 | MsG0880046342.01 | 0.813642 | 2.307780e-51 | 1.515473e-48 |
| MsG0680033926.01 | MsG0880046348.01 | -0.836417 | 9.476193e-57 | 1.193462e-53 |
| MsG0680033926.01 | MsG0880047328.01 | -0.802865 | 4.579492e-49 | 2.267838e-46 |
| MsG0480018606.01 | MsG0680033926.01 | 0.825671 | 4.127339e-54 | 3.787193e-51 |
| MsG0480018911.01 | MsG0680033926.01 | 0.800634 | 1.314409e-48 | 6.150779e-46 |
| MsG0480020410.01 | MsG0680033926.01 | -0.801543 | 8.566881e-49 | 4.102091e-46 |
| MsG0480020487.01 | MsG0680033926.01 | 0.826389 | 2.787317e-54 | 2.610437e-51 |
| MsG0480020719.01 | MsG0680033926.01 | 0.801290 | 9.656662e-49 | 4.594503e-46 |
| MsG0480020843.01 | MsG0680033926.01 | 0.804897 | 1.732890e-49 | 9.042240e-47 |
| MsG0480021190.01 | MsG0680033926.01 | 0.819438 | 1.161301e-52 | 8.936574e-50 |
| MsG0480021592.01 | MsG0680033926.01 | 0.844428 | 7.605569e-59 | 1.227477e-55 |
| MsG0480022393.01 | MsG0680033926.01 | -0.809250 | 2.076551e-50 | 1.213130e-47 |
| MsG0480023377.01 | MsG0680033926.01 | 0.822018 | 2.964665e-53 | 2.451675e-50 |
| MsG0480023554.01 | MsG0680033926.01 | 0.802925 | 4.451930e-49 | 2.207977e-46 |
| MsG0480023776.01 | MsG0680033926.01 | 0.809585 | 1.759593e-50 | 1.037202e-47 |
| MsG0580025042.01 | MsG0680033926.01 | 0.824361 | 8.415675e-54 | 7.437625e-51 |
| MsG0380015118.01 | MsG0680033926.01 | 0.805257 | 1.456427e-49 | 7.669235e-47 |
| MsG0380015215.01 | MsG0680033926.01 | -0.812437 | 4.241964e-51 | 2.697246e-48 |
| MsG0380015220.01 | MsG0680033926.01 | 0.850539 | 1.590713e-60 | 3.126014e-57 |
| MsG0380015289.01 | MsG0680033926.01 | 0.822345 | 2.489622e-53 | 2.078379e-50 |
| MsG0380016117.01 | MsG0680033926.01 | 0.814961 | 1.179855e-51 | 8.029151e-49 |
| MsG0380016118.01 | MsG0680033926.01 | -0.809567 | 1.775166e-50 | 1.045871e-47 |
| MsG0380016740.01 | MsG0680033926.01 | 0.819830 | 9.450125e-53 | 7.352242e-50 |
| MsG0380017229.01 | MsG0680033926.01 | 0.842411 | 2.629494e-58 | 3.983861e-55 |
| MsG0380017279.01 | MsG0680033926.01 | 0.805736 | 1.156060e-49 | 6.163565e-47 |
| MsG0380017433.01 | MsG0680033926.01 | 0.800792 | 1.220639e-48 | 5.734671e-46 |
| MsG0380017476.01 | MsG0680033926.01 | 0.800418 | 1.454596e-48 | 6.769839e-46 |
| MsG0380017512.01 | MsG0680033926.01 | 0.827343 | 1.648643e-54 | 1.587406e-51 |
| MsG0380017941.01 | MsG0680033926.01 | 0.804238 | 2.378136e-49 | 1.219822e-46 |
| MsG0380018022.01 | MsG0680033926.01 | 0.809251 | 2.075242e-50 | 1.212416e-47 |
| MsG0480018292.01 | MsG0680033926.01 | 0.840752 | 7.194700e-58 | 1.034889e-54 |
| MsG0580026488.01 | MsG0680033926.01 | -0.820823 | 5.596584e-53 | 4.475921e-50 |
| MsG0580027034.01 | MsG0680033926.01 | 0.800059 | 1.720947e-48 | 7.936594e-46 |
| MsG0580028664.01 | MsG0680033926.01 | -0.815750 | 7.876178e-52 | 5.477293e-49 |
| MsG0580029432.01 | MsG0680033926.01 | 0.803768 | 2.977403e-49 | 1.508974e-46 |
| MsG0580029550.01 | MsG0680033926.01 | 0.815572 | 8.628795e-52 | 5.971149e-49 |
| MsG0580029628.01 | MsG0680033926.01 | 0.804678 | 1.924718e-49 | 9.985656e-47 |
| MsG0580029919.01 | MsG0680033926.01 | 0.825643 | 4.191138e-54 | 3.842571e-51 |
| MsG0280006519.01 | MsG0680033926.01 | 0.816148 | 6.421631e-52 | 4.514326e-49 |
| MsG0280006679.01 | MsG0680033926.01 | 0.802191 | 6.308578e-49 | 3.070720e-46 |
| MsG0280006682.01 | MsG0680033926.01 | 0.812900 | 3.358407e-51 | 2.161507e-48 |
| MsG0280006852.01 | MsG0680033926.01 | 0.810912 | 9.103959e-51 | 5.557910e-48 |
| MsG0280006906.01 | MsG0680033926.01 | 0.827457 | 1.547820e-54 | 1.495205e-51 |
| MsG0280007165.01 | MsG0680033926.01 | -0.829278 | 5.629747e-55 | 5.735883e-52 |
| MsG0280007208.01 | MsG0680033926.01 | 0.819572 | 1.082460e-52 | 8.361452e-50 |
| MsG0280007440.01 | MsG0680033926.01 | 0.829287 | 5.601508e-55 | 5.708806e-52 |
| MsG0280007714.01 | MsG0680033926.01 | 0.804751 | 1.858954e-49 | 9.663060e-47 |
| MsG0280008104.01 | MsG0680033926.01 | 0.801057 | 1.077650e-48 | 5.097524e-46 |
| MsG0280009270.01 | MsG0680033926.01 | 0.809356 | 1.970099e-50 | 1.154252e-47 |
| MsG0280009554.01 | MsG0680033926.01 | 0.837237 | 5.850059e-57 | 7.551650e-54 |
| MsG0280010378.01 | MsG0680033926.01 | 0.800906 | 1.157034e-48 | 5.452046e-46 |
| MsG0280010423.01 | MsG0680033926.01 | -0.822646 | 2.118828e-53 | 1.784131e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033926.01.T01 | MTR_6g464840 | 95.882 | 510 | 18 | 1 | 1 | 510 | 122 | 628 | 0.0 | 975 |
| MsG0680033926.01.T01 | MTR_6g089580 | 95.686 | 510 | 19 | 1 | 1 | 510 | 122 | 628 | 0.0 | 975 |
| MsG0680033926.01.T01 | MTR_1g101790 | 68.401 | 538 | 127 | 10 | 2 | 510 | 120 | 643 | 0.0 | 713 |
| MsG0680033926.01.T01 | MTR_1g101790 | 67.932 | 527 | 126 | 10 | 2 | 499 | 120 | 632 | 0.0 | 691 |
| MsG0680033926.01.T01 | MTR_4g102620 | 50.501 | 499 | 203 | 11 | 30 | 510 | 143 | 615 | 1.48e-165 | 482 |
| MsG0680033926.01.T01 | MTR_8g079040 | 51.528 | 229 | 105 | 3 | 31 | 253 | 172 | 400 | 2.80e-70 | 241 |
| MsG0680033926.01.T01 | MTR_8g079040 | 45.614 | 171 | 79 | 4 | 337 | 493 | 751 | 921 | 3.59e-36 | 143 |
| MsG0680033926.01.T01 | MTR_8g079020 | 51.092 | 229 | 106 | 3 | 31 | 253 | 172 | 400 | 1.51e-69 | 239 |
| MsG0680033926.01.T01 | MTR_8g079020 | 43.860 | 171 | 82 | 3 | 337 | 493 | 755 | 925 | 3.80e-34 | 137 |
| MsG0680033926.01.T01 | MTR_3g099200 | 29.146 | 199 | 122 | 7 | 54 | 245 | 134 | 320 | 8.88e-17 | 81.6 |
| MsG0680033926.01.T01 | MTR_3g099200 | 29.146 | 199 | 122 | 7 | 54 | 245 | 181 | 367 | 1.31e-16 | 82.0 |
| MsG0680033926.01.T01 | MTR_4g104060 | 28.022 | 182 | 119 | 6 | 54 | 235 | 158 | 327 | 9.75e-15 | 75.9 |
| MsG0680033926.01.T01 | MTR_4g104060 | 28.022 | 182 | 119 | 6 | 54 | 235 | 172 | 341 | 1.19e-14 | 75.9 |
| MsG0680033926.01.T01 | MTR_4g030930 | 26.761 | 213 | 118 | 8 | 58 | 240 | 34 | 238 | 2.55e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033926.01.T01 | AT5G51920 | 51.883 | 478 | 168 | 6 | 25 | 499 | 138 | 556 | 3.94e-166 | 482 |
| MsG0680033926.01.T01 | AT4G22980 | 42.710 | 487 | 214 | 10 | 30 | 505 | 125 | 557 | 8.67e-123 | 371 |
| MsG0680033926.01.T01 | AT5G66950 | 50.847 | 236 | 110 | 3 | 24 | 253 | 164 | 399 | 1.00e-70 | 242 |
| MsG0680033926.01.T01 | AT5G66950 | 45.143 | 175 | 91 | 2 | 326 | 495 | 681 | 855 | 2.39e-38 | 150 |
| MsG0680033926.01.T01 | AT4G37100 | 41.613 | 310 | 169 | 4 | 24 | 327 | 170 | 473 | 2.31e-69 | 239 |
| MsG0680033926.01.T01 | AT4G37100 | 43.333 | 180 | 92 | 4 | 323 | 492 | 696 | 875 | 1.51e-35 | 142 |
| MsG0680033926.01.T01 | AT2G23520 | 48.908 | 229 | 111 | 3 | 31 | 253 | 173 | 401 | 9.64e-68 | 234 |
| MsG0680033926.01.T01 | AT2G23520 | 37.349 | 249 | 116 | 8 | 263 | 492 | 649 | 876 | 1.53e-33 | 135 |
Find 67 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGTGCTACGTCGATTT+TGG | 0.163564 | 6:+76605741 | MsG0680033926.01.T01:CDS |
| TTAAAAGCTTTCTACTCTTT+TGG | 0.183875 | 6:-76605324 | None:intergenic |
| GAGCAAGATATCCTTATATT+TGG | 0.191107 | 6:+76605548 | MsG0680033926.01.T01:CDS |
| CTTCCACCGCTTCGCTTTCA+TGG | 0.238873 | 6:-76605357 | None:intergenic |
| ATGGATTGTTGCATCATATA+TGG | 0.266349 | 6:+76606328 | MsG0680033926.01.T01:CDS |
| CCTCTATCAAATTTAACTTT+TGG | 0.267902 | 6:-76606207 | None:intergenic |
| GCTATACTTATCCAAATATA+AGG | 0.271173 | 6:-76605559 | None:intergenic |
| TTGAAGATATCTATAATCTT+TGG | 0.287935 | 6:+76606466 | MsG0680033926.01.T01:CDS |
| GGAGAAAACCCTTCTGGATT+TGG | 0.290344 | 6:+76605703 | MsG0680033926.01.T01:CDS |
| CCTCTTCATTCAAGAGTAAC+AGG | 0.291445 | 6:+76605526 | MsG0680033926.01.T01:CDS |
| CCAAAAGACATGGATTGTTT+TGG | 0.301962 | 6:+76605628 | MsG0680033926.01.T01:CDS |
| CCAAAACAATCCATGTCTTT+TGG | 0.304344 | 6:-76605628 | None:intergenic |
| GTATCTCTAGTGAAGATTTA+TGG | 0.311118 | 6:+76606183 | MsG0680033926.01.T01:CDS |
| GTGCGAGGTACTTGATTAAC+TGG | 0.317575 | 6:+76606115 | MsG0680033926.01.T01:CDS |
| TTGAAGACTTTGCTTCTTCA+TGG | 0.320259 | 6:+76605163 | MsG0680033926.01.T01:CDS |
| ACTGTTGTTACTGCTGCATT+AGG | 0.320994 | 6:+76606429 | MsG0680033926.01.T01:CDS |
| GACAAAGATGTCATATAAAA+TGG | 0.322067 | 6:-76605853 | None:intergenic |
| TTGGTTGATGCATGTGCATT+AGG | 0.335994 | 6:+76605604 | MsG0680033926.01.T01:CDS |
| AGAGATACCCCTTCGGAGTT+AGG | 0.363465 | 6:-76606168 | None:intergenic |
| AGAGAATGGTTGGAATGTTT+TGG | 0.364542 | 6:+76605585 | MsG0680033926.01.T01:CDS |
| TTTAGTATATCCTGCAAAAC+AGG | 0.365144 | 6:+76605136 | MsG0680033926.01.T01:CDS |
| TTGCATTCAATATATTTGAT+TGG | 0.365335 | 6:+76606238 | MsG0680033926.01.T01:CDS |
| AGAAAACTGTTGAAGTTTAA+CGG | 0.366475 | 6:+76606559 | MsG0680033926.01.T01:CDS |
| TCTCCTTCTACGAAATTTGC+AGG | 0.369064 | 6:-76605898 | None:intergenic |
| TTAGATCAAGTGGATTCATT+AGG | 0.372557 | 6:+76606072 | MsG0680033926.01.T01:CDS |
| GCAAGTTCAAATCGATGAAA+AGG | 0.379374 | 6:+76605999 | MsG0680033926.01.T01:CDS |
| ATCGGAAAACGATTACTTCA+TGG | 0.389650 | 6:+76605246 | MsG0680033926.01.T01:CDS |
| CAAGAACAAATAAGAAAATC+TGG | 0.394646 | 6:-76605667 | None:intergenic |
| AATATATTGAATGCAATTGC+AGG | 0.415602 | 6:-76606231 | None:intergenic |
| AGCAATATTTCTATTAGCTA+TGG | 0.416931 | 6:+76606309 | MsG0680033926.01.T01:CDS |
| CCAAAAGTTAAATTTGATAG+AGG | 0.423139 | 6:+76606207 | MsG0680033926.01.T01:CDS |
| CAACCTGCAAATTTCGTAGA+AGG | 0.429244 | 6:+76605895 | MsG0680033926.01.T01:CDS |
| TTCTTCTTCATCTAAATGTA+AGG | 0.434934 | 6:-76605830 | None:intergenic |
| AGATAAGTATGCCGATGAAA+AGG | 0.438948 | 6:+76606356 | MsG0680033926.01.T01:CDS |
| CATGAATTACCTTAACATAT+CGG | 0.439358 | 6:+76605228 | MsG0680033926.01.T01:CDS |
| ATCTGAAATTTGTGAAATTG+AGG | 0.449128 | 6:+76605966 | MsG0680033926.01.T01:CDS |
| GGAAGCGATGATTAGTTCTT+CGG | 0.461033 | 6:+76605375 | MsG0680033926.01.T01:CDS |
| TTGGAAACAAATTCTTCTGT+AGG | 0.464329 | 6:+76605760 | MsG0680033926.01.T01:CDS |
| TTCAATATATTTGATTGGAA+AGG | 0.488166 | 6:+76606243 | MsG0680033926.01.T01:CDS |
| GTATAGCGAAAGAGAATGGT+TGG | 0.497937 | 6:+76605575 | MsG0680033926.01.T01:CDS |
| GATAAGTATGCCGATGAAAA+GGG | 0.499232 | 6:+76606357 | MsG0680033926.01.T01:CDS |
| CAAGTTCAAATCGATGAAAA+GGG | 0.520584 | 6:+76606000 | MsG0680033926.01.T01:CDS |
| GAATTCAGTCAACAAAATTG+AGG | 0.533657 | 6:+76605449 | MsG0680033926.01.T01:CDS |
| TCAATTTCACAAATTTCAGA+TGG | 0.534494 | 6:-76605964 | None:intergenic |
| GTTGACTGAATTCTCAACCT+TGG | 0.534849 | 6:-76605439 | None:intergenic |
| AAAACTTTGATATTGAATGT+AGG | 0.544123 | 6:+76606046 | MsG0680033926.01.T01:CDS |
| ATGTAGGTGCTTAGATCAAG+TGG | 0.549169 | 6:+76606062 | MsG0680033926.01.T01:CDS |
| ATAAGTATAGCGAAAGAGAA+TGG | 0.550020 | 6:+76605571 | MsG0680033926.01.T01:CDS |
| AATTTGTGAAATTGAGGAGG+TGG | 0.569049 | 6:+76605972 | MsG0680033926.01.T01:CDS |
| CCTGTTACTCTTGAATGAAG+AGG | 0.573904 | 6:-76605526 | None:intergenic |
| AAGACTTTGCTTCTTCATGG+TGG | 0.585075 | 6:+76605166 | MsG0680033926.01.T01:CDS |
| TTAAGCATCCTAACTCCGAA+GGG | 0.587179 | 6:+76606160 | MsG0680033926.01.T01:CDS |
| CTTAAGCATCCTAACTCCGA+AGG | 0.590433 | 6:+76606159 | MsG0680033926.01.T01:CDS |
| TGACCATGAAAGCGAAGCGG+TGG | 0.596891 | 6:+76605354 | MsG0680033926.01.T01:CDS |
| AACGGCATATCGGAAAATTG+AGG | 0.597999 | 6:-76605112 | None:intergenic |
| AAAAGGCAACCAAATCCAGA+AGG | 0.598988 | 6:-76605712 | None:intergenic |
| CTTCACTAGAGATACCCCTT+CGG | 0.603042 | 6:-76606175 | None:intergenic |
| GAGGTACTTGATTAACTGGT+TGG | 0.612614 | 6:+76606119 | MsG0680033926.01.T01:CDS |
| GTCTGAGATGAAAATTGTAG+AGG | 0.625413 | 6:+76605924 | MsG0680033926.01.T01:CDS |
| TGCATTAGGACCAAAAGACA+TGG | 0.636735 | 6:+76605618 | MsG0680033926.01.T01:CDS |
| TGAAATTTGTGAAATTGAGG+AGG | 0.643306 | 6:+76605969 | MsG0680033926.01.T01:CDS |
| TTTCACAGCGAATAGAACAT+CGG | 0.643774 | 6:+76605270 | MsG0680033926.01.T01:CDS |
| AAAGGCAACCAAATCCAGAA+GGG | 0.648687 | 6:-76605711 | None:intergenic |
| TACTGATCAATGATCGTGCG+AGG | 0.670329 | 6:+76606100 | MsG0680033926.01.T01:CDS |
| AAGGTAAGTATTGAAACTTG+CGG | 0.699855 | 6:-76605811 | None:intergenic |
| TAAGCATCCTAACTCCGAAG+GGG | 0.700579 | 6:+76606161 | MsG0680033926.01.T01:CDS |
| TTATGACCATGAAAGCGAAG+CGG | 0.729811 | 6:+76605351 | MsG0680033926.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTTGATATTGAATGT+AGG | + | Chr6:76606046-76606065 | MsG0680033926.01.T01:CDS | 20.0% |
| !! | AAGAAAGATAAAGAAAAAGT+TGG | + | Chr6:76606402-76606421 | MsG0680033926.01.T01:CDS | 20.0% |
| !! | AGAAAGAAGAAGAAAAATAA+GGG | + | Chr6:76605490-76605509 | MsG0680033926.01.T01:CDS | 20.0% |
| !! | TTCAATATATTTGATTGGAA+AGG | + | Chr6:76606243-76606262 | MsG0680033926.01.T01:CDS | 20.0% |
| !! | TTGAAGATATCTATAATCTT+TGG | + | Chr6:76606466-76606485 | MsG0680033926.01.T01:CDS | 20.0% |
| !! | TTGCATTCAATATATTTGAT+TGG | + | Chr6:76606238-76606257 | MsG0680033926.01.T01:CDS | 20.0% |
| !!! | TGTTCTTGTTATAAAGTTTT+CGG | + | Chr6:76605682-76605701 | MsG0680033926.01.T01:CDS | 20.0% |
| ! | AATATATTGAATGCAATTGC+AGG | - | Chr6:76606234-76606253 | None:intergenic | 25.0% |
| ! | CAAGAACAAATAAGAAAATC+TGG | - | Chr6:76605670-76605689 | None:intergenic | 25.0% |
| ! | CATGAATTACCTTAACATAT+CGG | + | Chr6:76605228-76605247 | MsG0680033926.01.T01:CDS | 25.0% |
| ! | CCAAAAGTTAAATTTGATAG+AGG | + | Chr6:76606207-76606226 | MsG0680033926.01.T01:CDS | 25.0% |
| ! | GACAAAGATGTCATATAAAA+TGG | - | Chr6:76605856-76605875 | None:intergenic | 25.0% |
| ! | GAGAAAGAAGAAGAAAAATA+AGG | + | Chr6:76605489-76605508 | MsG0680033926.01.T01:CDS | 25.0% |
| ! | GCTATACTTATCCAAATATA+AGG | - | Chr6:76605562-76605581 | None:intergenic | 25.0% |
| ! | TATACTAAAAAACGGCATAT+CGG | - | Chr6:76605125-76605144 | None:intergenic | 25.0% |
| ! | TCAATTTCACAAATTTCAGA+TGG | - | Chr6:76605967-76605986 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATCTAAATGTA+AGG | - | Chr6:76605833-76605852 | None:intergenic | 25.0% |
| ! | TTGCAGGATATACTAAAAAA+CGG | - | Chr6:76605133-76605152 | None:intergenic | 25.0% |
| !! | AGCAATATTTCTATTAGCTA+TGG | + | Chr6:76606309-76606328 | MsG0680033926.01.T01:CDS | 25.0% |
| !! | ATCTGAAATTTGTGAAATTG+AGG | + | Chr6:76605966-76605985 | MsG0680033926.01.T01:CDS | 25.0% |
| !! | TAGCACTTTTCTTGATAAAA+AGG | - | Chr6:76605732-76605751 | None:intergenic | 25.0% |
| !! | TTAAAAGCTTTCTACTCTTT+TGG | - | Chr6:76605327-76605346 | None:intergenic | 25.0% |
| !!! | CCTCTATCAAATTTAACTTT+TGG | - | Chr6:76606210-76606229 | None:intergenic | 25.0% |
| ATAAGTATAGCGAAAGAGAA+TGG | + | Chr6:76605571-76605590 | MsG0680033926.01.T01:CDS | 30.0% | |
| CAAGTTCAAATCGATGAAAA+GGG | + | Chr6:76606000-76606019 | MsG0680033926.01.T01:CDS | 30.0% | |
| GAATTCAGTCAACAAAATTG+AGG | + | Chr6:76605449-76605468 | MsG0680033926.01.T01:CDS | 30.0% | |
| GAGCAAGATATCCTTATATT+TGG | + | Chr6:76605548-76605567 | MsG0680033926.01.T01:CDS | 30.0% | |
| GTATCTCTAGTGAAGATTTA+TGG | + | Chr6:76606183-76606202 | MsG0680033926.01.T01:CDS | 30.0% | |
| TGAAATTTGTGAAATTGAGG+AGG | + | Chr6:76605969-76605988 | MsG0680033926.01.T01:CDS | 30.0% | |
| TTGGAAACAAATTCTTCTGT+AGG | + | Chr6:76605760-76605779 | MsG0680033926.01.T01:CDS | 30.0% | |
| TTTAGTATATCCTGCAAAAC+AGG | + | Chr6:76605136-76605155 | MsG0680033926.01.T01:CDS | 30.0% | |
| ! | AATCGTTTTCCGATATGTTA+AGG | - | Chr6:76605240-76605259 | None:intergenic | 30.0% |
| ! | ATGGATTGTTGCATCATATA+TGG | + | Chr6:76606328-76606347 | MsG0680033926.01.T01:CDS | 30.0% |
| ! | TTAGATCAAGTGGATTCATT+AGG | + | Chr6:76606072-76606091 | MsG0680033926.01.T01:CDS | 30.0% |
| !! | AAGGTAAGTATTGAAACTTG+CGG | - | Chr6:76605814-76605833 | None:intergenic | 30.0% |
| AATTTGTGAAATTGAGGAGG+TGG | + | Chr6:76605972-76605991 | MsG0680033926.01.T01:CDS | 35.0% | |
| AGATAAGTATGCCGATGAAA+AGG | + | Chr6:76606356-76606375 | MsG0680033926.01.T01:CDS | 35.0% | |
| ATCGGAAAACGATTACTTCA+TGG | + | Chr6:76605246-76605265 | MsG0680033926.01.T01:CDS | 35.0% | |
| GATAAGTATGCCGATGAAAA+GGG | + | Chr6:76606357-76606376 | MsG0680033926.01.T01:CDS | 35.0% | |
| GCAAGTTCAAATCGATGAAA+AGG | + | Chr6:76605999-76606018 | MsG0680033926.01.T01:CDS | 35.0% | |
| TTGAAGACTTTGCTTCTTCA+TGG | + | Chr6:76605163-76605182 | MsG0680033926.01.T01:CDS | 35.0% | |
| TTTCACAGCGAATAGAACAT+CGG | + | Chr6:76605270-76605289 | MsG0680033926.01.T01:CDS | 35.0% | |
| ! | AGAGAATGGTTGGAATGTTT+TGG | + | Chr6:76605585-76605604 | MsG0680033926.01.T01:CDS | 35.0% |
| ! | ATTAGTTCTTCGGAAAAACG+AGG | + | Chr6:76605385-76605404 | MsG0680033926.01.T01:CDS | 35.0% |
| ! | CCAAAACAATCCATGTCTTT+TGG | - | Chr6:76605631-76605650 | None:intergenic | 35.0% |
| ! | CTTCAAATTTCCTGTTTTGC+AGG | - | Chr6:76605149-76605168 | None:intergenic | 35.0% |
| ! | GTCTGAGATGAAAATTGTAG+AGG | + | Chr6:76605924-76605943 | MsG0680033926.01.T01:CDS | 35.0% |
| ! | TAGTACTCTTCCCTTTTCAT+CGG | - | Chr6:76606370-76606389 | None:intergenic | 35.0% |
| !! | CCAAAAGACATGGATTGTTT+TGG | + | Chr6:76605628-76605647 | MsG0680033926.01.T01:CDS | 35.0% |
| !!! | TACTGCTGCATTAGGTTTTT+TGG | + | Chr6:76606437-76606456 | MsG0680033926.01.T01:CDS | 35.0% |
| AAAAGGCAACCAAATCCAGA+AGG | - | Chr6:76605715-76605734 | None:intergenic | 40.0% | |
| AAAGGCAACCAAATCCAGAA+GGG | - | Chr6:76605714-76605733 | None:intergenic | 40.0% | |
| AACGGCATATCGGAAAATTG+AGG | - | Chr6:76605115-76605134 | None:intergenic | 40.0% | |
| AAGACTTTGCTTCTTCATGG+TGG | + | Chr6:76605166-76605185 | MsG0680033926.01.T01:CDS | 40.0% | |
| ACTGTTGTTACTGCTGCATT+AGG | + | Chr6:76606429-76606448 | MsG0680033926.01.T01:CDS | 40.0% | |
| ATGTAGGTGCTTAGATCAAG+TGG | + | Chr6:76606062-76606081 | MsG0680033926.01.T01:CDS | 40.0% | |
| CAACCTGCAAATTTCGTAGA+AGG | + | Chr6:76605895-76605914 | MsG0680033926.01.T01:CDS | 40.0% | |
| CCTCTTCATTCAAGAGTAAC+AGG | + | Chr6:76605526-76605545 | MsG0680033926.01.T01:CDS | 40.0% | |
| CCTGTTACTCTTGAATGAAG+AGG | - | Chr6:76605529-76605548 | None:intergenic | 40.0% | |
| GTATAGCGAAAGAGAATGGT+TGG | + | Chr6:76605575-76605594 | MsG0680033926.01.T01:CDS | 40.0% | |
| GTTGACTGAATTCTCAACCT+TGG | - | Chr6:76605442-76605461 | None:intergenic | 40.0% | |
| TCTCCTTCTACGAAATTTGC+AGG | - | Chr6:76605901-76605920 | None:intergenic | 40.0% | |
| TGCATTAGGACCAAAAGACA+TGG | + | Chr6:76605618-76605637 | MsG0680033926.01.T01:CDS | 40.0% | |
| TTAAGCATCCTAACTCCGAA+GGG | + | Chr6:76606160-76606179 | MsG0680033926.01.T01:CDS | 40.0% | |
| TTATGACCATGAAAGCGAAG+CGG | + | Chr6:76605351-76605370 | MsG0680033926.01.T01:CDS | 40.0% | |
| ! | CTATGTCAGCAGAGTTTTCA+TGG | + | Chr6:76605416-76605435 | MsG0680033926.01.T01:CDS | 40.0% |
| ! | GAGGTACTTGATTAACTGGT+TGG | + | Chr6:76606119-76606138 | MsG0680033926.01.T01:CDS | 40.0% |
| ! | GGAAGCGATGATTAGTTCTT+CGG | + | Chr6:76605375-76605394 | MsG0680033926.01.T01:CDS | 40.0% |
| ! | TTGGTTGATGCATGTGCATT+AGG | + | Chr6:76605604-76605623 | MsG0680033926.01.T01:CDS | 40.0% |
| !!! | ATCTTTGGTGTTTTGTTGCG+AGG | + | Chr6:76606481-76606500 | MsG0680033926.01.T01:CDS | 40.0% |
| !!! | GAAAAGTGCTACGTCGATTT+TGG | + | Chr6:76605741-76605760 | MsG0680033926.01.T01:CDS | 40.0% |
| !!! | TCAGATGGTTTTGACACACT+TGG | - | Chr6:76605952-76605971 | None:intergenic | 40.0% |
| !!! | TGATGCTGATTTTGTCGAGA+AGG | + | Chr6:76606509-76606528 | MsG0680033926.01.T01:CDS | 40.0% |
| CTTAAGCATCCTAACTCCGA+AGG | + | Chr6:76606159-76606178 | MsG0680033926.01.T01:CDS | 45.0% | |
| CTTCACTAGAGATACCCCTT+CGG | - | Chr6:76606178-76606197 | None:intergenic | 45.0% | |
| GGAGAAAACCCTTCTGGATT+TGG | + | Chr6:76605703-76605722 | MsG0680033926.01.T01:CDS | 45.0% | |
| TAAGCATCCTAACTCCGAAG+GGG | + | Chr6:76606161-76606180 | MsG0680033926.01.T01:CDS | 45.0% | |
| TACTGATCAATGATCGTGCG+AGG | + | Chr6:76606100-76606119 | MsG0680033926.01.T01:CDS | 45.0% | |
| ! | ATTTTGTCGAGAAGGAGAGG+TGG | + | Chr6:76606517-76606536 | MsG0680033926.01.T01:CDS | 45.0% |
| ! | CTGATTTTGTCGAGAAGGAG+AGG | + | Chr6:76606514-76606533 | MsG0680033926.01.T01:CDS | 45.0% |
| ! | GTGCGAGGTACTTGATTAAC+TGG | + | Chr6:76606115-76606134 | MsG0680033926.01.T01:CDS | 45.0% |
| ! | GTTTTCGGAGAAAACCCTTC+TGG | + | Chr6:76605697-76605716 | MsG0680033926.01.T01:CDS | 45.0% |
| !!! | GCGGCTTTTTTTCTTGCACA+AGG | - | Chr6:76605795-76605814 | None:intergenic | 45.0% |
| AGAGATACCCCTTCGGAGTT+AGG | - | Chr6:76606171-76606190 | None:intergenic | 50.0% | |
| ! | CAGCAGAGTTTTCATGGCCA+AGG | + | Chr6:76605422-76605441 | MsG0680033926.01.T01:CDS | 50.0% |
| ! | GCGAGTTTTTGCACGAGAAC+AGG | - | Chr6:76606282-76606301 | None:intergenic | 50.0% |
| CTTCCACCGCTTCGCTTTCA+TGG | - | Chr6:76605360-76605379 | None:intergenic | 55.0% | |
| TGACCATGAAAGCGAAGCGG+TGG | + | Chr6:76605354-76605373 | MsG0680033926.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 76605046 | 76606578 | 76605046 | ID=MsG0680033926.01;Name=MsG0680033926.01 |
| Chr6 | mRNA | 76605046 | 76606578 | 76605046 | ID=MsG0680033926.01.T01;Parent=MsG0680033926.01;Name=MsG0680033926.01.T01;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|510 |
| Chr6 | exon | 76605046 | 76606578 | 76605046 | ID=MsG0680033926.01.T01:exon:34303;Parent=MsG0680033926.01.T01 |
| Chr6 | CDS | 76605046 | 76606578 | 76605046 | ID=MsG0680033926.01.T01:cds;Parent=MsG0680033926.01.T01 |
| Gene Sequence |
| Protein sequence |
