AlfalfaGEDB | MsG0780040591.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040591.01

KEGG: -
GO: -
PFAM: PF08879

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040591.01.T01	XP_003625273.1	83.673	343	48	3	1	340	1	338	0	537

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040591.01.T01	G7KVE9	83.673	343	48	3	1	340	1	338	0.0	537

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0780040591.01	0.803205	3.895131e-49	1.945716e-46
MsG0080048461.01	MsG0780040591.01	0.801732	7.838655e-49	3.771225e-46
MsG0080048683.01	MsG0780040591.01	0.801285	9.675385e-49	4.602947e-46
MsG0080048892.01	MsG0780040591.01	0.801465	8.888747e-49	4.247797e-46
MsG0080048928.01	MsG0780040591.01	0.809228	2.098786e-50	1.225428e-47
MsG0180000091.01	MsG0780040591.01	0.808092	3.670210e-50	2.079540e-47
MsG0180000470.01	MsG0780040591.01	0.819516	1.115011e-52	8.599040e-50
MsG0180000604.01	MsG0780040591.01	0.816523	5.291838e-52	3.758420e-49
MsG0180000741.01	MsG0780040591.01	0.809996	1.435173e-50	8.552037e-48
MsG0180000821.01	MsG0780040591.01	0.814553	1.452845e-51	9.779086e-49

Showing 1 to 10 of 239 entries

Previous1 2 3 4 5…24Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040591.01.T01	MTR_7g093350	83.673	343	48	3	1	340	1	338	0.0	537
MsG0780040591.01.T01	MTR_7g093360	84.058	345	47	4	1	340	1	342	4.23e-178	497
MsG0780040591.01.T01	MTR_7g093350	83.265	245	33	3	99	340	8	247	3.40e-137	390
MsG0780040591.01.T01	MTR_7g093360	86.522	230	27	2	112	340	26	252	1.38e-128	368
MsG0780040591.01.T01	MTR_1g054175	50.462	325	127	11	26	340	1	301	4.01e-76	236
MsG0780040591.01.T01	MTR_1g054175	53.815	249	91	8	100	340	14	246	1.64e-63	202

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040591.01.T01	AT2G42040	51.667	120	18	2	210	329	163	242	6.02e-22	94.0

Showing 1 to 1 of 1 entries

Previous1Next

Find 79 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAATATAAAGAAGA+AGG	0.502625	7:-79606008	MsG0780040591.01.T01:CDS
AAAGGAAGGTTCGAGAGTAA+TGG	0.576653	7:-79606133	MsG0780040591.01.T01:CDS
AACGGCTATGATTATCCATC+TGG	0.442160	7:-79607083	MsG0780040591.01.T01:CDS
AAGCTATTCCCATAAAGAAA+TGG	0.430295	7:-79606156	MsG0780040591.01.T01:CDS
AAGGTTCGAGAGTAATGGTA+TGG	0.464503	7:-79606128	MsG0780040591.01.T01:CDS
ACTTAGCAATGGAGACATCT+TGG	0.459465	7:-79606337	MsG0780040591.01.T01:intron
AGAAAAGAACTTGTCTCTTA+CGG	0.470316	7:+79607297	None:intergenic
AGAACACTTCTTATTCATCT+TGG	0.397343	7:+79606066	None:intergenic
AGACTTTGTTTAGAAGATAA+AGG	0.315376	7:+79607403	None:intergenic
AGAGGAGAAGAGAAAGAGAG+TGG	0.488117	7:-79606753	MsG0780040591.01.T01:CDS

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAAGGTGACAAAAA+GGG	-	Chr7:79607084-79607103	MsG0780040591.01.T01:CDS	30.0%
AAATAATTTCACACCCAGAA+AGG	-	Chr7:79606242-79606261	MsG0780040591.01.T01:intron	30.0%
AAGCTATTCCCATAAAGAAA+TGG	-	Chr7:79606924-79606943	MsG0780040591.01.T01:intron	30.0%
AATAATTTCACACCCAGAAA+GGG	-	Chr7:79606243-79606262	MsG0780040591.01.T01:intron	30.0%
ACAATATAAGAACCCTTTCT+GGG	+	Chr7:79606258-79606277	None:intergenic	30.0%
ACATTATTGTTGAGGAACAA+AGG	+	Chr7:79606630-79606649	None:intergenic	30.0%
AGAAAAGAACTTGTCTCTTA+CGG	+	Chr7:79605786-79605805	None:intergenic	30.0%
AGAACACTTCTTATTCATCT+TGG	+	Chr7:79607017-79607036	None:intergenic	30.0%
ATCAACCATACCAAAATACA+TGG	+	Chr7:79606283-79606302	None:intergenic	30.0%
ATTCCCATAAAGAAATGGAA+AGG	-	Chr7:79606929-79606948	MsG0780040591.01.T01:intron	30.0%

Showing 1 to 10 of 126 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	79605592	79607510	79605592	ID=MsG0780040591.01;Name=MsG0780040591.01
Chr7	mRNA	79605592	79607510	79605592	ID=MsG0780040591.01.T01;Parent=MsG0780040591.01;Name=MsG0780040591.01.T01;_AED=0.43;_eAED=0.43;_QI=183\|1\|1\|1\|1\|1\|4\|0\|340
Chr7	exon	79605592	79606202	79605592	ID=MsG0780040591.01.T01:exon:552;Parent=MsG0780040591.01.T01
Chr7	exon	79606295	79606353	79606295	ID=MsG0780040591.01.T01:exon:551;Parent=MsG0780040591.01.T01
Chr7	exon	79606729	79606787	79606729	ID=MsG0780040591.01.T01:exon:550;Parent=MsG0780040591.01.T01
Chr7	exon	79607034	79607510	79607034	ID=MsG0780040591.01.T01:exon:549;Parent=MsG0780040591.01.T01
Chr7	five_prime_UTR	79607328	79607510	79607328	ID=MsG0780040591.01.T01:five_prime_utr;Parent=MsG0780040591.01.T01
Chr7	CDS	79607034	79607327	79607034	ID=MsG0780040591.01.T01:cds;Parent=MsG0780040591.01.T01
Chr7	CDS	79606729	79606787	79606729	ID=MsG0780040591.01.T01:cds;Parent=MsG0780040591.01.T01
Chr7	CDS	79606295	79606353	79606295	ID=MsG0780040591.01.T01:cds;Parent=MsG0780040591.01.T01
Chr7	CDS	79605592	79606202	79605592	ID=MsG0780040591.01.T01:cds;Parent=MsG0780040591.01.T01

Gene Sequence

>MsG0780040591.01.T01

ATGAGGATCCGTAAGAGACAAGTTCTTTTCTCTTCTTCTGAGTCTTTTTCACCTTTGCATCTCTCAGATCCCCACATGATGAACCAGTCACCGATGGTGGTGCAACTTGGTGAGGGACCAAAACCTTGTTCTTCACAATCACAACAACATGTTTCAGCTTGTTTGAGCTTGGATCGTTATCAGCCGTCTGATCAAACACTCCCACTGATCGGGAAACTAAACAACGGCTATGATTATCCATCTGGTCTTGAGGAAAGTGGGTTATGCAAACAGCTCAACAAGCTAGATCCTTTGGATGAAAAAGTTAGAGGAGAAGAGAAAGAGAGTGGAGATAACAAAAGTAATCATATCAGCAATGGAGACATCTTGGTTGTTTCTCAAGTCTTGCCATCATCAAGCTCTTCTGAACAAGATGGGAGATGGTGTGAGGGAGAGAAAGCTATTCCCATAAAGAAATGGAAAGGAAGGTTCGAGAGTAATGGTATGGAGAGTAATGATAGTAAGAAAGTGAAGGCTAAGATGAACACCAAGATGAATAAGAAGTGTTCTCTGGGGAAAGATGATGAAGATGAAGAAAGTGAAACAAAAGTGAATATAAAGAAGAAGGTGACAAAAAGGGGAAGTGCACTGATGGAAGGTTCAAGGTGCAGTCGTGTTAATGGAAGAGGATGGAGGTGTTGTCAACAAACACTTGTTGGTTATTCACTTTGTGAGCATCATTTAGGGAAAGGAAGGTTGAGAAGTATGACAAGTGTTAGAAATAGATCTAATATTGGATTTTCTGCTACTACTACTGCATCAAACAATGTTGTTGATAGTGTTTTATCTTCTAATTCTGATCTTGAAATGCTTGAAAAGAAAACCATTTATGGGAATGATGATAAGTTGGATAATGATGATGAGAAGAAGCCACTAATAATTGCAAAGAAAAGAATGAAGCTTGGAATGGTTAAAGCCCGATCTATGAGCAGCTTATTGGGACAGACAGACAACAAGGTTGTAGTCAATGAGAATAACAAGTAA

Protein sequence

>MsG0780040591.01.T01

MRIRKRQVLFSSSESFSPLHLSDPHMMNQSPMVVQLGEGPKPCSSQSQQHVSACLSLDRYQPSDQTLPLIGKLNNGYDYPSGLEESGLCKQLNKLDPLDEKVRGEEKESGDNKSNHISNGDILVVSQVLPSSSSSEQDGRWCEGEKAIPIKKWKGRFESNGMESNDSKKVKAKMNTKMNKKCSLGKDDEDEESETKVNIKKKVTKRGSALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRSNIGFSATTTASNNVVDSVLSSNSDLEMLEKKTIYGNDDKLDNDDEKKPLIIAKKRMKLGMVKARSMSSLLGQTDNKVVVNENNK*