AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010544.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010544.01.T03 MTR_2g086580 86.275 204 19 1 1 204 1 195 2.30e-118 343
MsG0280010544.01.T03 MTR_7g104900 69.799 149 45 0 56 204 71 219 3.32e-69 219
MsG0280010544.01.T03 MTR_4g052850 66.879 157 48 1 47 203 61 213 1.70e-68 213
MsG0280010544.01.T03 MTR_1g089500 71.774 124 35 0 81 204 66 189 2.98e-59 193
MsG0280010544.01.T03 MTR_8g026680 59.211 152 61 1 53 204 81 231 1.48e-58 191
MsG0280010544.01.T03 MTR_7g107560 60.265 151 55 1 59 204 32 182 3.82e-56 184
MsG0280010544.01.T03 MTR_5g064420 70.297 101 24 3 103 203 34 128 2.17e-40 137
MsG0280010544.01.T03 MTR_7g081615 66.667 81 25 1 123 203 16 94 5.02e-30 109
MsG0280010544.01.T01 MTR_2g086580 89.908 109 11 0 1 109 244 352 2.37e-64 202
MsG0280010544.01.T01 MTR_4g052850 65.625 96 31 1 1 96 263 356 5.49e-35 124
MsG0280010544.01.T01 MTR_7g104900 69.620 79 24 0 1 79 268 346 2.03e-31 115
MsG0280010544.01.T01 MTR_8g026680 60.000 100 36 2 1 98 280 377 4.48e-27 104
MsG0280010544.01.T01 MTR_1g089500 76.667 60 14 0 1 60 238 297 8.60e-25 97.8
MsG0280010544.01.T01 MTR_7g107560 75.000 60 15 0 1 60 231 290 3.78e-17 76.3
MsG0280010544.01.T02 MTR_2g086580 89.908 109 11 0 1 109 244 352 2.37e-64 202
MsG0280010544.01.T02 MTR_4g052850 65.625 96 31 1 1 96 263 356 5.49e-35 124
MsG0280010544.01.T02 MTR_7g104900 69.620 79 24 0 1 79 268 346 2.03e-31 115
MsG0280010544.01.T02 MTR_8g026680 60.000 100 36 2 1 98 280 377 4.48e-27 104
MsG0280010544.01.T02 MTR_1g089500 76.667 60 14 0 1 60 238 297 8.60e-25 97.8
MsG0280010544.01.T02 MTR_7g107560 75.000 60 15 0 1 60 231 290 3.78e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010544.01.T03 AT5G22400 70.395 152 44 1 53 204 87 237 1.51e-70 222
MsG0280010544.01.T03 AT3G11490 65.541 148 50 1 57 204 67 213 5.44e-66 209
MsG0280010544.01.T03 AT1G08340 73.770 122 32 0 82 203 1 122 5.45e-62 196
MsG0280010544.01.T03 AT4G03100 58.642 162 56 1 54 204 39 200 2.07e-61 197
MsG0280010544.01.T03 AT2G46710 54.891 184 79 2 24 204 43 225 4.69e-61 197
MsG0280010544.01.T01 AT5G22400 61.905 105 35 1 1 100 286 390 2.33e-35 126
MsG0280010544.01.T01 AT3G11490 60.194 103 37 1 1 99 262 364 7.55e-31 114
MsG0280010544.01.T01 AT2G46710 63.636 77 26 1 1 75 274 350 6.44e-25 98.2
MsG0280010544.01.T01 AT4G03100 51.456 103 47 1 1 103 249 348 3.71e-24 95.9
MsG0280010544.01.T01 AT1G08340 66.667 60 20 0 1 60 172 231 5.88e-22 89.0
MsG0280010544.01.T02 AT5G22400 61.905 105 35 1 1 100 286 390 2.33e-35 126
MsG0280010544.01.T02 AT3G11490 60.194 103 37 1 1 99 262 364 7.55e-31 114
MsG0280010544.01.T02 AT2G46710 63.636 77 26 1 1 75 274 350 6.44e-25 98.2
MsG0280010544.01.T02 AT4G03100 51.456 103 47 1 1 103 249 348 3.71e-24 95.9
MsG0280010544.01.T02 AT1G08340 66.667 60 20 0 1 60 172 231 5.88e-22 89.0

Find 52 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAATAATTCAATATATT+TGG 0.186294 2:+71251472 MsG0280010544.01.T01:intron
GTCATAATTTAGATTGAATA+AGG 0.192957 2:+71251577 MsG0280010544.01.T01:intron
TGATAGGTTCAATGGTTTCT+TGG 0.248536 2:+71251295 MsG0280010544.01.T01:five_prime_UTR
ATTATTCGTTCGCTAATTAA+AGG 0.248802 2:-71251749 None:intergenic
GTGACAATACATTACTAAAT+TGG 0.256851 2:+71251600 MsG0280010544.01.T01:intron
CCTAGCATTAGGAGGCCTTA+TGG 0.296935 2:-71251348 None:intergenic
TGTCATGGTGGCAATGAAAA+AGG 0.303033 2:-71250985 None:intergenic
AGGCATCTGTATGTTCAAAA+AGG 0.303451 2:+71251934 MsG0280010544.01.T01:five_prime_UTR
TATCAAGTTTACCTAGCATT+AGG 0.311454 2:-71251359 None:intergenic
TCTAAATTATGACATATAAA+TGG 0.322756 2:-71251567 None:intergenic
GATAGGTTCAATGGTTTCTT+GGG 0.329734 2:+71251296 MsG0280010544.01.T01:five_prime_UTR
TTGGTAGTGTATATAATTCA+TGG 0.334316 2:+71251491 MsG0280010544.01.T01:intron
TTGTCTGGCAGGACTAATTA+AGG 0.347959 2:+71252168 MsG0280010544.01.T01:five_prime_UTR
CTAGCATTAGGAGGCCTTAT+GGG 0.368271 2:-71251347 None:intergenic
TGCATTAACAGAAGAATTGT+TGG 0.374854 2:-71251910 None:intergenic
GAAGTTGAAGTTGAAGTTGA+AGG 0.390622 2:-71251077 None:intergenic
GGAGGCCTTATGGGAAAATC+AGG 0.392157 2:-71251338 None:intergenic
ACATTACTAAATTGGATGCT+TGG 0.419005 2:+71251608 MsG0280010544.01.T01:intron
CAATGTACATAAATGTCTTC+AGG 0.419373 2:-71252148 None:intergenic
AGACATTTATGTACATTGTC+TGG 0.431060 2:+71252153 MsG0280010544.01.T01:five_prime_UTR
TCATAATTTAGATTGAATAA+GGG 0.437479 2:+71251578 MsG0280010544.01.T01:intron
GTTAGGAATCAATTGAACTT+AGG 0.440142 2:+71252118 MsG0280010544.01.T01:five_prime_UTR
AAATCAGGTTCAAACTCATC+AGG 0.480208 2:-71251323 None:intergenic
AAGTAAAATGAGGTGGAGAA+TGG 0.481632 2:-71251016 None:intergenic
ATAGTCAAGAGGAACATGTT+AGG 0.482181 2:+71252101 MsG0280010544.01.T01:five_prime_UTR
GAATCAATTGAACTTAGGAT+TGG 0.495739 2:+71252123 MsG0280010544.01.T01:five_prime_UTR
CAAAAGTAACGTGCGCGACA+TGG 0.511699 2:-71251274 None:intergenic
ATTTGTACATGTAGGTGGAG+GGG 0.517754 2:+71252056 MsG0280010544.01.T01:intron
ATTTATGTACATTGTCTGGC+AGG 0.531168 2:+71252157 MsG0280010544.01.T01:five_prime_UTR
ACATGGTGCACGTTAGTTGG+AGG 0.534874 2:-71251257 None:intergenic
TTGTTGCCACTACTCTTGAA+AGG 0.537642 2:-71251209 None:intergenic
AATTTGTACATGTAGGTGGA+GGG 0.538632 2:+71252055 MsG0280010544.01.T01:intron
ACTTGATACTAATTCGAGAA+AGG 0.542594 2:+71251374 MsG0280010544.01.T01:intron
CAATTCTTCTGTTAATGCAA+AGG 0.543052 2:+71251914 MsG0280010544.01.T01:five_prime_UTR
CATGGTGCACGTTAGTTGGA+GGG 0.549026 2:-71251256 None:intergenic
GCGACATGGTGCACGTTAGT+TGG 0.550817 2:-71251260 None:intergenic
TTATTTCCTTTCAAGAGTAG+TGG 0.553770 2:+71251203 MsG0280010544.01.T01:five_prime_UTR
AAATGAGAAATAGTAAGACT+TGG 0.562992 2:-71250851 None:intergenic
CAAGTTTACCTAGCATTAGG+AGG 0.565752 2:-71251356 None:intergenic
GGCTTATGTCCATGTTGCAA+AGG 0.566679 2:-71251235 None:intergenic
CAACAAAGACCTTTGCAACA+TGG 0.570037 2:+71251226 MsG0280010544.01.T01:five_prime_UTR
CAGTTATCTTATGATTCAAG+AGG 0.573101 2:+71251877 MsG0280010544.01.T01:five_prime_UTR
CCATAAGGCCTCCTAATGCT+AGG 0.576970 2:+71251348 MsG0280010544.01.T01:five_prime_UTR
TAATGCAGACAATAGTCAAG+AGG 0.607790 2:+71252090 MsG0280010544.01.T01:five_prime_UTR
CTTTGTGATGAAGTAAAATG+AGG 0.608680 2:-71251026 None:intergenic
AGTTAGAATGAAGAAAAGTG+TGG 0.627548 2:-71250805 None:intergenic
GTTAGAATGAAGAAAAGTGT+GGG 0.630052 2:-71250804 None:intergenic
TGGCAAGAGAATGAAGAGAG+AGG 0.631862 2:-71251107 None:intergenic
ATTCGTTCGCTAATTAAAGG+CGG 0.634719 2:-71251746 None:intergenic
TGTGATGAAGTAAAATGAGG+TGG 0.669876 2:-71251023 None:intergenic
AGAATGGAGAACTTCTGTCA+TGG 0.691349 2:-71251000 None:intergenic
ATGGAGAACTTCTGTCATGG+TGG 0.693833 2:-71250997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTAATAATTCAATATATT+TGG + Chr2:71251472-71251491 MsG0280010544.01.T01:intron 10.0%
!!! TGTTTTGTAATAATAAAAAA+TGG - Chr2:71251532-71251551 None:intergenic 10.0%
!! AGAAAAAAGTAAAACAAAAA+GGG - Chr2:71251794-71251813 None:intergenic 15.0%
!! CCAAAATAAAAAAGTTTAAT+TGG - Chr2:71253228-71253247 None:intergenic 15.0%
!! GAAAATATCAATTTACATTT+CGG - Chr2:71253905-71253924 None:intergenic 15.0%
!! TCATAATTTAGATTGAATAA+GGG + Chr2:71251578-71251597 MsG0280010544.01.T01:intron 15.0%
!! TCTAAATTATGACATATAAA+TGG - Chr2:71251570-71251589 None:intergenic 15.0%
!! TGAGAATCAAAATTATTAAT+TGG - Chr2:71253199-71253218 None:intergenic 15.0%
!! TTATTAACAAAAATCAGATA+TGG - Chr2:71251461-71251480 None:intergenic 15.0%
!!! ATTTTTTACTTTTGTTAGAA+AGG + Chr2:71252353-71252372 MsG0280010544.01.T01:intron 15.0%
!!! CCAATTAAACTTTTTTATTT+TGG + Chr2:71253225-71253244 MsG0280010544.01.T01:intron 15.0%
!!! TATTTTCTAAATTAAGAAAG+TGG - Chr2:71250911-71250930 None:intergenic 15.0%
!!! TTTTTTACTTTTGTTAGAAA+GGG + Chr2:71252354-71252373 MsG0280010544.01.T01:intron 15.0%
!! AACTATGCTAACAAAAATAT+AGG + Chr2:71251706-71251725 MsG0280010544.01.T01:intron 20.0%
!! ATATATACTGTAGTTATGAA+GGG + Chr2:71252597-71252616 MsG0280010544.01.T01:intron 20.0%
!! GAGAAAAAAGTAAAACAAAA+AGG - Chr2:71251795-71251814 None:intergenic 20.0%
!! GTCATAATTTAGATTGAATA+AGG + Chr2:71251577-71251596 MsG0280010544.01.T01:intron 20.0%
!! TACTTTAAACAAACTTACAA+AGG - Chr2:71253936-71253955 None:intergenic 20.0%
!!! GTAAGTTTGTTTAAAGTATA+AGG + Chr2:71253938-71253957 MsG0280010544.01.T01:three_prime_UTR 20.0%
!!! TATAAAAGCATTAATGAAGA+AGG - Chr2:71252893-71252912 None:intergenic 20.0%
!!! TGTAATTAACTTGAACTTAA+AGG - Chr2:71253307-71253326 None:intergenic 20.0%
!!! TTCAAGTTAATTACAGTATT+TGG + Chr2:71253312-71253331 MsG0280010544.01.T01:intron 20.0%
!!! TTTTCAAAGATGAAAATGTA+TGG - Chr2:71252846-71252865 None:intergenic 20.0%
! AAAGTTGAATTTGTACATGT+AGG + Chr2:71252048-71252067 MsG0280010544.01.T01:intron 25.0%
! AAATGAGAAATAGTAAGACT+TGG - Chr2:71250854-71250873 None:intergenic 25.0%
! AATAACAACATATAGGGTAA+AGG - Chr2:71252739-71252758 None:intergenic 25.0%
! ACATTGAAAAGGAAACAAAA+AGG - Chr2:71250635-71250654 None:intergenic 25.0%
! AGCTAACAATAACAACATAT+AGG - Chr2:71252746-71252765 None:intergenic 25.0%
! ATAAGGTTGCAAATTTCTAA+GGG + Chr2:71253955-71253974 MsG0280010544.01.T01:three_prime_UTR 25.0%
! ATTATTCGTTCGCTAATTAA+AGG - Chr2:71251752-71251771 None:intergenic 25.0%
! GATATATACTGTAGTTATGA+AGG + Chr2:71252596-71252615 MsG0280010544.01.T01:intron 25.0%
! GCTAAACTATTATTAGTTCA+TGG + Chr2:71253261-71253280 MsG0280010544.01.T01:intron 25.0%
! GCTAACAATAACAACATATA+GGG - Chr2:71252745-71252764 None:intergenic 25.0%
! GTGACAATACATTACTAAAT+TGG + Chr2:71251600-71251619 MsG0280010544.01.T01:intron 25.0%
! TATAAGGTTGCAAATTTCTA+AGG + Chr2:71253954-71253973 MsG0280010544.01.T01:three_prime_UTR 25.0%
! TATATAAGTTAAACAAGCAC+AGG - Chr2:71254022-71254041 None:intergenic 25.0%
! TCTTGAAGACACTTATATTA+AGG + Chr2:71253399-71253418 MsG0280010544.01.T01:CDS 25.0%
! TTTGTCTCATTTATTAGAGT+TGG - Chr2:71252483-71252502 None:intergenic 25.0%
!! AAGATTGAATTTAGAACCTT+CGG + Chr2:71253463-71253482 MsG0280010544.01.T01:CDS 25.0%
!! ATCATGAAGTGAGTATTTTA+AGG - Chr2:71250776-71250795 None:intergenic 25.0%
!! TGATATTCTTGTACTTTTCA+AGG + Chr2:71252936-71252955 MsG0280010544.01.T01:intron 25.0%
!!! TATTATTTTGTTGCGTGTTT+TGG - Chr2:71250746-71250765 None:intergenic 25.0%
!!! TTGGTAGTGTATATAATTCA+TGG + Chr2:71251491-71251510 MsG0280010544.01.T01:intron 25.0%
AAAGGAGTTGAAGGATTTAA+AGG - Chr2:71252721-71252740 None:intergenic 30.0%
ACATTACTAAATTGGATGCT+TGG + Chr2:71251608-71251627 MsG0280010544.01.T01:intron 30.0%
ACTTGATACTAATTCGAGAA+AGG + Chr2:71251374-71251393 MsG0280010544.01.T01:intron 30.0%
AGACATTTATGTACATTGTC+TGG + Chr2:71252153-71252172 MsG0280010544.01.T01:five_prime_UTR 30.0%
AGTAGTTCAAATGCTAGAAA+AGG + Chr2:71253750-71253769 MsG0280010544.01.T01:three_prime_UTR 30.0%
AGTTAGAATGAAGAAAAGTG+TGG - Chr2:71250808-71250827 None:intergenic 30.0%
CAATGTACATAAATGTCTTC+AGG - Chr2:71252151-71252170 None:intergenic 30.0%
CAATTCTTCTGTTAATGCAA+AGG + Chr2:71251914-71251933 MsG0280010544.01.T01:five_prime_UTR 30.0%
CAGTTATCTTATGATTCAAG+AGG + Chr2:71251877-71251896 MsG0280010544.01.T01:five_prime_UTR 30.0%
CTTTGTGATGAAGTAAAATG+AGG - Chr2:71251029-71251048 None:intergenic 30.0%
GAATCAATTGAACTTAGGAT+TGG + Chr2:71252123-71252142 MsG0280010544.01.T01:five_prime_UTR 30.0%
GGAATCAGATTTCATTACAA+TGG - Chr2:71254116-71254135 None:intergenic 30.0%
GTAGTTCAAATGCTAGAAAA+GGG + Chr2:71253751-71253770 MsG0280010544.01.T01:three_prime_UTR 30.0%
GTTACTAAAAGCTCAAAAAG+TGG - Chr2:71251167-71251186 None:intergenic 30.0%
GTTAGGAATCAATTGAACTT+AGG + Chr2:71252118-71252137 MsG0280010544.01.T01:five_prime_UTR 30.0%
GTTTAGTGAATTGATCTGAA+TGG + Chr2:71252254-71252273 MsG0280010544.01.T01:intron 30.0%
TATCAAGTTTACCTAGCATT+AGG - Chr2:71251362-71251381 None:intergenic 30.0%
TGCATTAACAGAAGAATTGT+TGG - Chr2:71251913-71251932 None:intergenic 30.0%
TTATTTCCTTTCAAGAGTAG+TGG + Chr2:71251203-71251222 MsG0280010544.01.T01:five_prime_UTR 30.0%
! AATATTTGGGATGGTAAACA+GGG + Chr2:71252568-71252587 MsG0280010544.01.T01:intron 30.0%
! GTTAGAATGAAGAAAAGTGT+GGG - Chr2:71250807-71250826 None:intergenic 30.0%
! TTCTTTCCCATGTTTCTTTT+CGG - Chr2:71253711-71253730 None:intergenic 30.0%
!! ACATCATTTTCAAGACACAT+TGG + Chr2:71252507-71252526 MsG0280010544.01.T01:intron 30.0%
!! GAAGGTTCTAAATTCAATCT+TGG - Chr2:71253464-71253483 None:intergenic 30.0%
!! TTTTGAAGGAGGTTGAAAAA+TGG - Chr2:71251135-71251154 None:intergenic 30.0%
!!! GTTACTTTTGATAGGTTCAA+TGG + Chr2:71251287-71251306 MsG0280010544.01.T01:five_prime_UTR 30.0%
AAAAGGGTCCAAAAAGACAA+GGG + Chr2:71253767-71253786 MsG0280010544.01.T01:three_prime_UTR 35.0%
AAATCAGGTTCAAACTCATC+AGG - Chr2:71251326-71251345 None:intergenic 35.0%
AAGACTGTATTGAACTAGTG+AGG + Chr2:71253034-71253053 MsG0280010544.01.T01:five_prime_UTR 35.0%
AAGTAAAATGAGGTGGAGAA+TGG - Chr2:71251019-71251038 None:intergenic 35.0%
AATGTTGCTGTGTAACATGT+TGG + Chr2:71250650-71250669 MsG0280010544.01.T01:five_prime_UTR 35.0%
AATTTGTACATGTAGGTGGA+GGG + Chr2:71252055-71252074 MsG0280010544.01.T01:intron 35.0%
AGCTACACCATGCAATATTT+GGG + Chr2:71252555-71252574 MsG0280010544.01.T01:intron 35.0%
AGCTCAAAAAGTGGAAAATG+TGG - Chr2:71251158-71251177 None:intergenic 35.0%
AGGCATCTGTATGTTCAAAA+AGG + Chr2:71251934-71251953 MsG0280010544.01.T01:five_prime_UTR 35.0%
ATAGTCAAGAGGAACATGTT+AGG + Chr2:71252101-71252120 MsG0280010544.01.T01:five_prime_UTR 35.0%
ATATAGGGTAAAGGAGTTGA+AGG - Chr2:71252730-71252749 None:intergenic 35.0%
ATTCGTTCGCTAATTAAAGG+CGG - Chr2:71251749-71251768 None:intergenic 35.0%
ATTTATGTACATTGTCTGGC+AGG + Chr2:71252157-71252176 MsG0280010544.01.T01:five_prime_UTR 35.0%
GAAATGACTCGAAAAGTCTA+CGG - Chr2:71253502-71253521 None:intergenic 35.0%
GAAGTTGAAGTTGAAGTTGA+AGG - Chr2:71251080-71251099 None:intergenic 35.0%
GAATCATGTGTGCAGATAAT+TGG + Chr2:71252422-71252441 MsG0280010544.01.T01:intron 35.0%
GATAGGTTCAATGGTTTCTT+GGG + Chr2:71251296-71251315 MsG0280010544.01.T01:five_prime_UTR 35.0%
GGCATCTGTATGTTCAAAAA+GGG + Chr2:71251935-71251954 MsG0280010544.01.T01:five_prime_UTR 35.0%
GTTACACAGCAACATTGAAA+AGG - Chr2:71250646-71250665 None:intergenic 35.0%
GTTGAATTTGTACATGTAGG+TGG + Chr2:71252051-71252070 MsG0280010544.01.T01:intron 35.0%
TAATGCAGACAATAGTCAAG+AGG + Chr2:71252090-71252109 MsG0280010544.01.T01:five_prime_UTR 35.0%
TACAATTCCTCGTTGCAAAT+TGG - Chr2:71253675-71253694 None:intergenic 35.0%
TACGTCATCCATAAGATTGA+TGG - Chr2:71253097-71253116 None:intergenic 35.0%
TAGCTACACCATGCAATATT+TGG + Chr2:71252554-71252573 MsG0280010544.01.T01:intron 35.0%
TGATAGGTTCAATGGTTTCT+TGG + Chr2:71251295-71251314 MsG0280010544.01.T01:five_prime_UTR 35.0%
TGTGATGAAGTAAAATGAGG+TGG - Chr2:71251026-71251045 None:intergenic 35.0%
TGTTGAATACGCATGACATT+AGG - Chr2:71252808-71252827 None:intergenic 35.0%
TTACCATCCCAAATATTGCA+TGG - Chr2:71252565-71252584 None:intergenic 35.0%
TTTCCTCCGAAAAGAAACAT+GGG + Chr2:71253702-71253721 MsG0280010544.01.T01:three_prime_UTR 35.0%
! ACATGTAGTGCAACTGTTTT+TGG + Chr2:71251835-71251854 MsG0280010544.01.T01:intron 35.0%
! CAATATTTGGGATGGTAAAC+AGG + Chr2:71252567-71252586 MsG0280010544.01.T01:intron 35.0%
! GTTTTGTGTGTTAGATAGAG+TGG - Chr2:71250693-71250712 None:intergenic 35.0%
! TGTGATCAATGCAAAAGTGT+CGG + Chr2:71253800-71253819 MsG0280010544.01.T01:three_prime_UTR 35.0%
! TTGAACCTGATTTTCCCATA+AGG + Chr2:71251333-71251352 MsG0280010544.01.T01:five_prime_UTR 35.0%
!! ACTTTTCAAGGCTTGGTTTT+GGG + Chr2:71252948-71252967 MsG0280010544.01.T01:intron 35.0%
!! CTTGTCTCAAATTTTGACGA+AGG - Chr2:71251425-71251444 None:intergenic 35.0%
!! TACTTTTCAAGGCTTGGTTT+TGG + Chr2:71252947-71252966 MsG0280010544.01.T01:intron 35.0%
!! TTCTTGTACTTTTCAAGGCT+TGG + Chr2:71252941-71252960 MsG0280010544.01.T01:intron 35.0%
!! TTTTGAGTATTGTGTTGAGC+TGG - Chr2:71250831-71250850 None:intergenic 35.0%
!!! AGTGGAAAATGTGGTTTTGA+AGG - Chr2:71251149-71251168 None:intergenic 35.0%
!!! GGAGTTTTTTTCGAGTGATT+CGG - Chr2:71253607-71253626 None:intergenic 35.0%
AAAGGGTCCAAAAAGACAAG+GGG + Chr2:71253768-71253787 MsG0280010544.01.T01:three_prime_UTR 40.0%
AAGGAGGTTGAAAAATGGCA+TGG - Chr2:71251130-71251149 None:intergenic 40.0%
ACACCATGCAATATTTGGGA+TGG + Chr2:71252559-71252578 MsG0280010544.01.T01:intron 40.0%
AGAATGGAGAACTTCTGTCA+TGG - Chr2:71251003-71251022 None:intergenic 40.0%
ATGGGAAAGAACAACAAGTC+TGG + Chr2:71253720-71253739 MsG0280010544.01.T01:three_prime_UTR 40.0%
ATTTGTACATGTAGGTGGAG+GGG + Chr2:71252056-71252075 MsG0280010544.01.T01:intron 40.0%
CAACAAAGACCTTTGCAACA+TGG + Chr2:71251226-71251245 MsG0280010544.01.T01:five_prime_UTR 40.0%
CAAGTTTACCTAGCATTAGG+AGG - Chr2:71251359-71251378 None:intergenic 40.0%
CAATACAGTCTTCCTCAGTT+TGG - Chr2:71253026-71253045 None:intergenic 40.0%
GAAAAGGGTCCAAAAAGACA+AGG + Chr2:71253766-71253785 MsG0280010544.01.T01:three_prime_UTR 40.0%
GAATTTGTACATGTAGGTGG+AGG + Chr2:71252054-71252073 MsG0280010544.01.T01:intron 40.0%
GGATTAGGCCATCAATCTTA+TGG + Chr2:71253086-71253105 MsG0280010544.01.T01:intron 40.0%
GTATGTTCAAAAAGGGTTGC+AGG + Chr2:71251942-71251961 MsG0280010544.01.T01:five_prime_UTR 40.0%
GTGTGCAGATAATTGGAGAA+AGG + Chr2:71252429-71252448 MsG0280010544.01.T01:intron 40.0%
GTTTCCTCCGAAAAGAAACA+TGG + Chr2:71253701-71253720 MsG0280010544.01.T01:three_prime_UTR 40.0%
TCCTCAACTGAAAGAGAATC+TGG + Chr2:71253624-71253643 MsG0280010544.01.T01:intron 40.0%
TGAGAATCCAATTTGCAACG+AGG + Chr2:71253665-71253684 MsG0280010544.01.T01:three_prime_UTR 40.0%
TGTCATGGTGGCAATGAAAA+AGG - Chr2:71250988-71251007 None:intergenic 40.0%
TTAGAACCTTCGGATGAGAA+TGG + Chr2:71253473-71253492 MsG0280010544.01.T01:CDS 40.0%
TTGTCTGGCAGGACTAATTA+AGG + Chr2:71252168-71252187 MsG0280010544.01.T01:five_prime_UTR 40.0%
TTGTTGCCACTACTCTTGAA+AGG - Chr2:71251212-71251231 None:intergenic 40.0%
! TTTCCCATGTTTCTTTTCGG+AGG - Chr2:71253708-71253727 None:intergenic 40.0%
!! AAAAGTGTCGGTCGAGAAAA+AGG + Chr2:71253812-71253831 MsG0280010544.01.T01:three_prime_UTR 40.0%
!! AAAGTGTCGGTCGAGAAAAA+GGG + Chr2:71253813-71253832 MsG0280010544.01.T01:three_prime_UTR 40.0%
!! CTTTTGCATTGATCACAGGT+TGG - Chr2:71253797-71253816 None:intergenic 40.0%
!! GACACTTTTGCATTGATCAC+AGG - Chr2:71253801-71253820 None:intergenic 40.0%
!! TTGGCTTTTCTGATTGCAGA+TGG + Chr2:71253331-71253350 MsG0280010544.01.T01:intron 40.0%
!!! GCTCGTTTTTTCTCCTTCAT+CGG + Chr2:71252680-71252699 MsG0280010544.01.T01:intron 40.0%
!!! GGAAAATGTGGTTTTGAAGG+AGG - Chr2:71251146-71251165 None:intergenic 40.0%
AAGGACGCTACGAGAAAGAA+AGG + Chr2:71253418-71253437 MsG0280010544.01.T01:CDS 45.0%
ATGGAGAACTTCTGTCATGG+TGG - Chr2:71251000-71251019 None:intergenic 45.0%
CAGTGTTCAAACTCCGATGA+AGG - Chr2:71252696-71252715 None:intergenic 45.0%
CTTCATCGGAGTTTGAACAC+TGG + Chr2:71252694-71252713 MsG0280010544.01.T01:intron 45.0%
GAACAGACCTGAGTCATGTT+TGG - Chr2:71253177-71253196 None:intergenic 45.0%
GCCAGATTCTCTTTCAGTTG+AGG - Chr2:71253628-71253647 None:intergenic 45.0%
GCGTACATCAATGCAGTGAA+TGG - Chr2:71253362-71253381 None:intergenic 45.0%
GGACTCATTATCACAAGAGC+AGG + Chr2:71252990-71253009 MsG0280010544.01.T01:five_prime_UTR 45.0%
GGCTTATGTCCATGTTGCAA+AGG - Chr2:71251238-71251257 None:intergenic 45.0%
GGTAATGCAATGCCAAACTG+AGG + Chr2:71253011-71253030 MsG0280010544.01.T01:five_prime_UTR 45.0%
TGAAGCTGCACTCTTGGATT+AGG + Chr2:71253071-71253090 MsG0280010544.01.T01:five_prime_UTR 45.0%
TGGCAAGAGAATGAAGAGAG+AGG - Chr2:71251110-71251129 None:intergenic 45.0%
! CTAGCATTAGGAGGCCTTAT+GGG - Chr2:71251350-71251369 None:intergenic 45.0%
!! TTGGTGTCCCCTTGTCTTTT+TGG - Chr2:71253778-71253797 None:intergenic 45.0%
!!! TCGCGCACGTTACTTTTGAT+AGG + Chr2:71251279-71251298 MsG0280010544.01.T01:five_prime_UTR 45.0%
!! AAAAAAATATATAAAAAGAA+AGG - Chr2:71250946-71250965 None:intergenic 5.0%
ACATGGTGCACGTTAGTTGG+AGG - Chr2:71251260-71251279 None:intergenic 50.0%
CAAAAGTAACGTGCGCGACA+TGG - Chr2:71251277-71251296 None:intergenic 50.0%
CATGGTGCACGTTAGTTGGA+GGG - Chr2:71251259-71251278 None:intergenic 50.0%
CATGTTTGGCGCGAAAACCA+TGG - Chr2:71253163-71253182 None:intergenic 50.0%
CCATAAGGCCTCCTAATGCT+AGG + Chr2:71251348-71251367 MsG0280010544.01.T01:five_prime_UTR 50.0%
CCTAGCATTAGGAGGCCTTA+TGG - Chr2:71251351-71251370 None:intergenic 50.0%
CGGTCGAGAAAAAGGGAATG+AGG + Chr2:71253820-71253839 MsG0280010544.01.T01:three_prime_UTR 50.0%
TCATGCTGAAGCTGCACTCT+TGG + Chr2:71253065-71253084 MsG0280010544.01.T01:five_prime_UTR 50.0%
TGCAGCAGCAGACAATGAAG+AGG + Chr2:71253535-71253554 MsG0280010544.01.T01:CDS 50.0%
TTTCGCGCCAAACATGACTC+AGG + Chr2:71253167-71253186 MsG0280010544.01.T01:CDS 50.0%
! AAGAGTGCAGCTTCAGCATG+AGG - Chr2:71253066-71253085 None:intergenic 50.0%
! GGAGGCCTTATGGGAAAATC+AGG - Chr2:71251341-71251360 None:intergenic 50.0%
!!! TGGTTTTGGGAACGTCCTAG+CGG + Chr2:71252961-71252980 MsG0280010544.01.T01:five_prime_UTR 50.0%
AATGAGTCCAGAACGCCGCT+AGG - Chr2:71252979-71252998 None:intergenic 55.0%
CGGTGTCCATTCTCATCCGA+AGG - Chr2:71253482-71253501 None:intergenic 55.0%
GAATGCGCGCAACATTGCCA+TGG + Chr2:71253143-71253162 MsG0280010544.01.T01:CDS 55.0%
GATCAGACCGAGTCGAAGCT+TGG + Chr2:71253865-71253884 MsG0280010544.01.T01:three_prime_UTR 55.0%
GCGACATGGTGCACGTTAGT+TGG - Chr2:71251263-71251282 None:intergenic 55.0%
TTCACCGCCAAGCTTCGACT+CGG - Chr2:71253875-71253894 None:intergenic 55.0%
CAGACCGAGTCGAAGCTTGG+CGG + Chr2:71253868-71253887 MsG0280010544.01.T01:three_prime_UTR 60.0%
GGAACGTCCTAGCGGCGTTC+TGG + Chr2:71252969-71252988 MsG0280010544.01.T01:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 71250620 71254140 71250620 ID=MsG0280010544.01;Name=MsG0280010544.01
Chr2 mRNA 71250620 71254140 71250620 ID=MsG0280010544.01.T01;Parent=MsG0280010544.01;Name=MsG0280010544.01.T01;_AED=0.43;_eAED=0.43;_QI=1138|1|1|1|0.75|0.8|5|506|122
Chr2 five_prime_UTR 71250620 71251369 71250620 ID=MsG0280010544.01.T01:five_prime_utr;Parent=MsG0280010544.01.T01
Chr2 five_prime_UTR 71251843 71251963 71251843 ID=MsG0280010544.01.T01:five_prime_utr;Parent=MsG0280010544.01.T01
Chr2 five_prime_UTR 71252070 71252189 71252070 ID=MsG0280010544.01.T01:five_prime_utr;Parent=MsG0280010544.01.T01
Chr2 five_prime_UTR 71252958 71253104 71252958 ID=MsG0280010544.01.T01:five_prime_utr;Parent=MsG0280010544.01.T01
Chr2 CDS 71253105 71253188 71253105 ID=MsG0280010544.01.T01:cds;Parent=MsG0280010544.01.T01
Chr2 CDS 71253350 71253634 71253350 ID=MsG0280010544.01.T01:cds;Parent=MsG0280010544.01.T01
Chr2 three_prime_UTR 71253635 71254140 71253635 ID=MsG0280010544.01.T01:three_prime_utr;Parent=MsG0280010544.01.T01
Chr2 mRNA 71250807 71254140 71250807 ID=MsG0280010544.01.T02;Parent=MsG0280010544.01;Name=MsG0280010544.01.T02;_AED=0.42;_eAED=0.42;_QI=1424|1|1|1|0.66|0.75|4|506|122
Chr2 exon 71250807 71251963 71250807 ID=MsG0280010544.01.T02:exon:6769;Parent=MsG0280010544.01.T02
Chr2 five_prime_UTR 71250807 71251963 71250807 ID=MsG0280010544.01.T02:five_prime_utr;Parent=MsG0280010544.01.T02
Chr2 five_prime_UTR 71252070 71252189 71252070 ID=MsG0280010544.01.T02:five_prime_utr;Parent=MsG0280010544.01.T02
Chr2 five_prime_UTR 71252958 71253104 71252958 ID=MsG0280010544.01.T02:five_prime_utr;Parent=MsG0280010544.01.T02
Chr2 CDS 71253105 71253188 71253105 ID=MsG0280010544.01.T02:cds;Parent=MsG0280010544.01.T02
Chr2 CDS 71253350 71253634 71253350 ID=MsG0280010544.01.T02:cds;Parent=MsG0280010544.01.T02
Chr2 three_prime_UTR 71253635 71254140 71253635 ID=MsG0280010544.01.T02:three_prime_utr;Parent=MsG0280010544.01.T02
Chr2 mRNA 71250620 71252195 71250620 ID=MsG0280010544.01.T03;Parent=MsG0280010544.01;Name=MsG0280010544.01.T03;_AED=0.46;_eAED=0.47;_QI=382|1|0.66|1|1|1|3|0|204
Chr2 exon 71252070 71252195 71252070 ID=MsG0280010544.01.T03:exon:6770;Parent=MsG0280010544.01.T03
Chr2 five_prime_UTR 71250620 71251001 71250620 ID=MsG0280010544.01.T03:five_prime_utr;Parent=MsG0280010544.01.T03
Chr2 CDS 71251002 71251369 71251002 ID=MsG0280010544.01.T03:cds;Parent=MsG0280010544.01.T03
Chr2 CDS 71251843 71251963 71251843 ID=MsG0280010544.01.T03:cds;Parent=MsG0280010544.01.T03
Chr2 CDS 71252070 71252195 71252070 ID=MsG0280010544.01.T03:cds;Parent=MsG0280010544.01.T03
Gene Sequence

>MsG0280010544.01.T03

ATGACAGAAGTTCTCCATTCTCCACCTCATTTTACTTCATCACAAAGAACAACATCAACAACTACAACAACAACACCTTCAACTTCAACTTCAACTTCTTCTTCTCCTCTCTCTTCATTCTCTTGCCATGCCATTTTTCAACCTCCTTCAAAACCACATTTTCCACTTTTTGAGCTTTTAGTAACTCTTTTCAGAAAATCATTATTTCCTTTCAAGAGTAGTGGCAACAAAGACCTTTGCAACATGGACATAAGCCCTCCAACTAACGTGCACCATGTCGCGCACGTTACTTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGATGAGTTTGAACCTGATTTTCCCATAAGGCCTCCTAATGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCTATGCAGTTATCTTATGATTCAAGAGGAAACAGTGTGCCAACAATTCTTCTGTTAATGCAAAGGCATCTGTATGTTCAAAAAGGGTTGCAGGTGGAGGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGAATCAATTGAACTTAGGATTGGTTCCTGAAGACATTTATGTACATTGTCTGGCAGGACTAATTAAGGTATGA

>MsG0280010544.01.T01

ATGGATGACGTAGTCGAACAAGAAAATCTCAATAAGATGAATGCGCGCAACATTGCCATGGTTTTCGCGCCAAACATGACTCAGATGGCAGATCCATTCACTGCATTGATGTACGCAGTTCAAGTGATGAATTTCTTGAAGACACTTATATTAAGGACGCTACGAGAAAGAAAGGATTCTATCGTCGAATCTAATCCAAGATTGAATTTAGAACCTTCGGATGAGAATGGACACCGTAGACTTTTCGAGTCATTTCAGAAAGAAGATGCTGCAGCAGCAGACAATGAAGAGGCTAAAGAAATTTTTTGTTACAGAAAAAACTGTCTTAGAATGTACATCCGAATCACTCGAAAAAAACTCCTCAACTGA

>MsG0280010544.01.T02

ATGGATGACGTAGTCGAACAAGAAAATCTCAATAAGATGAATGCGCGCAACATTGCCATGGTTTTCGCGCCAAACATGACTCAGATGGCAGATCCATTCACTGCATTGATGTACGCAGTTCAAGTGATGAATTTCTTGAAGACACTTATATTAAGGACGCTACGAGAAAGAAAGGATTCTATCGTCGAATCTAATCCAAGATTGAATTTAGAACCTTCGGATGAGAATGGACACCGTAGACTTTTCGAGTCATTTCAGAAAGAAGATGCTGCAGCAGCAGACAATGAAGAGGCTAAAGAAATTTTTTGTTACAGAAAAAACTGTCTTAGAATGTACATCCGAATCACTCGAAAAAAACTCCTCAACTGA

Protein sequence

>MsG0280010544.01.T03

MTEVLHSPPHFTSSQRTTSTTTTTTPSTSTSTSSSPLSSFSCHAIFQPPSKPHFPLFELLVTLFRKSLFPFKSSGNKDLCNMDISPPTNVHHVAHVTFDRFNGFLGLPDEFEPDFPIRPPNASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQKGLQVEGIFRINADNSQEEHVRNQLNLGLVPEDIYVHCLAGLIKV*

>MsG0280010544.01.T01

MDDVVEQENLNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKTLILRTLRERKDSIVESNPRLNLEPSDENGHRRLFESFQKEDAAAADNEEAKEIFCYRKNCLRMYIRITRKKLLN*

>MsG0280010544.01.T02

MDDVVEQENLNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKTLILRTLRERKDSIVESNPRLNLEPSDENGHRRLFESFQKEDAAAADNEEAKEIFCYRKNCLRMYIRITRKKLLN*