AlfalfaGEDB | MsG0580028719.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028719.01

KEGG: -
GO: -
PFAM: PF13086 PF13087

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028719.01.T01	XP_024639454.1	78.76	758	82	7	63	750	3	751	0	1157
MsG0580028719.01.T01	XP_024639454.1	72.028	143	40	0	742	884	861	1003	2.11E-53	214

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028719.01.T01	B6SFA4	43.182	88	49	1	755	842	665	751	6.85E-15	82.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048505.01	MsG0580028719.01	0.863340	2.668772e-64	8.063862e-61
MsG0080048845.01	MsG0580028719.01	0.851148	1.071612e-60	2.148697e-57
MsG0080048969.01	MsG0580028719.01	0.853140	2.909254e-61	6.222618e-58
MsG0080049016.01	MsG0580028719.01	0.805636	1.213006e-49	6.450290e-47
MsG0080049130.01	MsG0580028719.01	0.818779	1.640209e-52	1.239383e-49
MsG0180000017.01	MsG0580028719.01	0.851185	1.046040e-60	2.100085e-57
MsG0180000489.01	MsG0580028719.01	0.845676	3.499619e-59	5.877592e-56
MsG0180000490.01	MsG0580028719.01	0.804123	2.512830e-49	1.285175e-46
MsG0180000491.01	MsG0580028719.01	0.834102	3.639504e-56	4.275698e-53
MsG0180000599.01	MsG0580028719.01	0.823863	1.101520e-53	9.599597e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028719.01.T01	MTR_5g076500	80.959	688	57	5	64	750	1	615	0.0	1082
MsG0580028719.01.T01	MTR_5g076500	75.658	152	18	2	742	893	725	857	7.62e-55	205
MsG0580028719.01.T01	MTR_5g076380	76.912	693	78	6	65	750	1	618	0.0	1028
MsG0580028719.01.T01	MTR_5g076380	72.028	143	40	0	742	884	728	870	1.34e-57	213
MsG0580028719.01.T01	MTR_5g076440	58.017	686	202	11	74	750	21	629	0.0	726
MsG0580028719.01.T01	MTR_5g076440	83.562	146	24	0	742	887	739	884	3.46e-64	233
MsG0580028719.01.T01	MTR_3g064190	47.338	695	261	17	73	750	13	619	0.0	570
MsG0580028719.01.T01	MTR_3g064190	66.225	151	51	0	742	892	729	879	1.49e-54	204
MsG0580028719.01.T01	MTR_5g076330	45.755	695	273	14	73	750	8	615	0.0	548
MsG0580028719.01.T01	MTR_5g076330	70.149	134	39	1	751	884	734	866	1.87e-51	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028719.01.T01	AT1G65780	34.512	707	358	17	65	750	1	623	2.52e-114	375
MsG0580028719.01.T01	AT1G65780	56.557	122	52	1	751	871	744	865	8.04e-36	147
MsG0580028719.01.T01	AT4G05540	34.211	570	274	18	199	753	10	493	6.00e-81	276
MsG0580028719.01.T01	AT4G05540	75.325	77	17	1	756	830	613	689	9.55e-28	120
MsG0580028719.01.T01	AT1G65810	39.211	431	230	12	75	482	22	443	1.43e-78	276
MsG0580028719.01.T01	AT1G65810	42.927	205	96	3	555	750	420	612	1.55e-39	159
MsG0580028719.01.T01	AT1G65810	66.990	103	34	0	756	858	735	837	8.10e-39	156
MsG0580028719.01.T01	AT1G65810	39.211	431	230	12	75	482	22	443	1.97e-78	276
MsG0580028719.01.T01	AT1G65810	42.927	205	96	3	555	750	420	612	1.43e-39	159
MsG0580028719.01.T01	AT1G65810	66.990	103	34	0	756	858	735	837	1.08e-38	156

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Find 147 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGTCAAATTGAGTT+TGG	0.333989	5:-85319646	MsG0580028719.01.T01:CDS
AAACTCAAACCGAGTCAAAG+TGG	0.586565	5:-85319672	MsG0580028719.01.T01:CDS
AAACTGATATGGGGACCACC+AGG	0.527115	5:-85315638	MsG0580028719.01.T01:CDS
AAAGGAAACTTAGTATCCGA+AGG	0.621936	5:+85314517	None:intergenic
AAATAATAAGAGAATGAAAG+TGG	0.526470	5:-85315435	MsG0580028719.01.T01:CDS
AACATCCATCTTCATGCATT+TGG	0.305607	5:+85316216	None:intergenic
AACTCAAACCGAGTCAAAGT+GGG	0.557349	5:-85319671	MsG0580028719.01.T01:CDS
AACTGATATGGGGACCACCA+GGG	0.682358	5:-85315637	MsG0580028719.01.T01:CDS
AAGAAGTATGTTTGAGAGAC+TGG	0.461971	5:-85314109	MsG0580028719.01.T01:intron
AAGATAAGTAAGGGGAACTA+TGG	0.462535	5:-85315212	MsG0580028719.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGAAAATATAGGAGG+AGG	-	Chr5:85314139-85314158	MsG0580028719.01.T01:intron	30.0%
AAAAGCAGTCAAATTGAGTT+TGG	-	Chr5:85312956-85312975	MsG0580028719.01.T01:three_prime_UTR	30.0%
AAACAGTTGAAGTATATGTC+CGG	+	Chr5:85315174-85315193	None:intergenic	30.0%
AAATGGAACCACAAATGTTA+AGG	+	Chr5:85315201-85315220	None:intergenic	30.0%
AAGCCTGAAAAAAGATTGAT+CGG	+	Chr5:85315775-85315794	None:intergenic	30.0%
AATCACTAAGCTATACCAAT+TGG	-	Chr5:85317458-85317477	MsG0580028719.01.T01:intron	30.0%
ACAAAGAAGAAAGTTAGCAT+TGG	-	Chr5:85318916-85318935	MsG0580028719.01.T01:intron	30.0%
ACCATATTGCCTATGTTAAT+GGG	-	Chr5:85316323-85316342	MsG0580028719.01.T01:CDS	30.0%
ATAATGCTTGTATTTCAGAG+TGG	-	Chr5:85316793-85316812	MsG0580028719.01.T01:intron	30.0%
ATAGAGCGACAATAATTTCA+AGG	-	Chr5:85315813-85315832	MsG0580028719.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	85312706	85319918	85312706	ID=MsG0580028719.01;Name=MsG0580028719.01
Chr5	mRNA	85312706	85319918	85312706	ID=MsG0580028719.01.T01;Parent=MsG0580028719.01;Name=MsG0580028719.01.T01;_AED=0.41;_eAED=0.44;_QI=0\|0.55\|0.4\|1\|1\|1\|10\|282\|900
Chr5	exon	85312706	85313016	85312706	ID=MsG0580028719.01.T01:exon:29931;Parent=MsG0580028719.01.T01
Chr5	exon	85313141	85313379	85313141	ID=MsG0580028719.01.T01:exon:29930;Parent=MsG0580028719.01.T01
Chr5	exon	85313462	85313646	85313462	ID=MsG0580028719.01.T01:exon:29929;Parent=MsG0580028719.01.T01
Chr5	exon	85314110	85314154	85314110	ID=MsG0580028719.01.T01:exon:29928;Parent=MsG0580028719.01.T01
Chr5	exon	85314254	85314841	85314254	ID=MsG0580028719.01.T01:exon:29927;Parent=MsG0580028719.01.T01
Chr5	exon	85315064	85315813	85315064	ID=MsG0580028719.01.T01:exon:29926;Parent=MsG0580028719.01.T01
Chr5	exon	85316063	85316641	85316063	ID=MsG0580028719.01.T01:exon:29925;Parent=MsG0580028719.01.T01
Chr5	exon	85317239	85317340	85317239	ID=MsG0580028719.01.T01:exon:29924;Parent=MsG0580028719.01.T01
Chr5	exon	85319627	85319774	85319627	ID=MsG0580028719.01.T01:exon:29923;Parent=MsG0580028719.01.T01
Chr5	exon	85319881	85319918	85319881	ID=MsG0580028719.01.T01:exon:29922;Parent=MsG0580028719.01.T01
Chr5	CDS	85319881	85319918	85319881	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85319627	85319774	85319627	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85317239	85317340	85317239	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85316063	85316641	85316063	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85315064	85315813	85315064	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85314254	85314841	85314254	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85314110	85314154	85314110	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85313462	85313646	85313462	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85313141	85313379	85313141	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	CDS	85312988	85313016	85312988	ID=MsG0580028719.01.T01:cds;Parent=MsG0580028719.01.T01
Chr5	three_prime_UTR	85312706	85312987	85312706	ID=MsG0580028719.01.T01:three_prime_utr;Parent=MsG0580028719.01.T01

Gene Sequence

>MsG0580028719.01.T01

ATGGCTATGGTGATGGAGAATAGAGAGAACTATGAGAAGACAAGTTTGGGTATGAGTTCAGGGTGGGTATACCTATATCTCCGTTACTCATCCCGTACCCGTATTTTGAAATCGGGGAAAACTCAAACCGAGTCAAAGTGGGGAAAAAGCAGTCAAATTGAGTTTGGTTCGGATGAGTACTCGCGGCAAATAATGGAGAAGAGTAGAAATGGAAGTGGGAGTCTTATAGATATTGTACTTTCTTGGACCCTCGAGGATGTTCTCAATGAAAATCTTTACGAAGACAAGGTTCATAAGATTCCAGAGACATTTAAGTCAGCAACAGATTACAAGAACTCTTTTCCTCTATTGTTTGAGGAAACACGCGCTGATTTATCTTCAAGCTTGTCTGGTGTGTCTCAAGCTGCTCTTTGTGAAATCAAGAATGTCGAACACAGCAAGCACTTGAAACTTCACAAATCTCAAAATCAATTCATTCAGTTCCATCATACCATATGGTTGGAGAGTACAACTGAATCTGATAGAGATGAAAATGGTGAAAATTATGAACCTGCATCAGGAGATCTTATTGCTATTACATACATTAGGCCAAAAAGCTTAAATGACTTGAACACACTCAACAGTCCCTACCATATTGCCTATGTTAATGGGGTAAAAAATATATTTTCTGGTAGAATCACAGTTCTATCTTCCAAATGCATGAAGATGGATGTTGAATCTGTATCCATGAAAAATAATACACAGAAAATGTATGCTGTTTACATTATGAACATGACAACAAATGTTCGTATTTGGAAAGCCTTGAACTCAAAGTCAAAGGGTGATCACCTCAACATTATTGAAAAAGTTTTGCAACCTAATCTCAATAGTGGAGAGAACTGCAAAATTTGCATGTCTCGATCAAATAGTAAAGCTTCTTTCATTACGAAAGACATAATTCGATCTCATAATCTGAATGAATCCCAACAAGATGCGGTTACAAGCTGTGCTAGTATGGTAGATTGCTCTCATGCTAATACCAAACTGATATGGGGACCACCAGGGACAGGAAAAACAAAGTCTGTTGCATGCTTGCTTTTTTCTCTACTCAAGTTGAAATCAAGAACATTGGCCTGTGCTCCAACTAATACTGCAGTGTTGCAAGTGGCAACAAGGTTGCATAGTTTAGTTACAGATTCACTTGACGATGATACATATGGTTTAAGTGACATTGTGCTATTTGGAAATAATAAGAGAATGAAAGTGGAAAGTTATCCAGGTCTTGAAGATATCTTTCTTGATTATCGCGTGAAAAATCTCATGCAGTGCTATGCTGAATGGAAGCATAGCTTTGAAGCAATGATCGAATTTCTTAGTGATCCTAGTAAACAATATTTCTTGGAGATGTCCAAAAAGGATTTTGTTATGGATAAAAATAGGATTTTAGCATCTGCATATCATGCATACAAGATAAGTAAGGGGAACTATGGTCTGATTATGAGGTTTGAGGATTATGTTCAGAAGGCACGGACAGAAATCACTAAGCTATACCAATTGGTTGAGAATGACAAAAAGAAATGTATGTTGACAATTGAGCGATTTGTGAAACAGAGAATTGATAAACTAAGAATGAATAAAGGATATGTGAAGAGAGCAAGGAAAGAGATTATAGAGCTATACCAAAGTATCATGACCATGGAGCAATTTGTGAAGCAGAGATTTGGAAAATTAAGTGAGAAGCTAAAGTTCTTGATACATACCTTATGCACCCACATGCCAAAATCTTTCATTTCAGTTAACAACATGCTCCAAGCTCTTGACTTGTTAAAATCAATGGAAATTTCCTTGAGTCAAGCCAAATTTAAGCAAACTGTTGATGATTGTGAAGAAGAAAGCATTCCTGCTTGCTTTGGACCATCAAGTTTGGAAAGAAATGATTGCCTTCGGATACTAAGTTTCCTTTCCAACTCAATTTCGCTTCCTGAATTTAAAGTGAGACATCAAGTGGAAAAGTTTTGCTGGTCAAATGCTAGTCTAATTTTGTGTACTGTATCAAGTTCTGTCAAACTTTACTCAGAAGAGACGAGTCCAGTGAAATTTTTAGTGATTGATGAAGCAGCACAGCTGAAAGAATGTGAATCCATGATTCCGTTACAGCTCCCGGGTCTTCAACATTGCATTCTTATAGGTGATGAGAAACAACTTCCAGCGCTAGTCAAAAGCAAGATTGCGGACAATTGTCGATTTGGAAGAAGTATGTTTGAGAGACTGGAGAAAGTTAAGCAAGACACTTGGGATTCTAATTCTGACTTTTCTGTTAATGTTCGTTCTGTTGATGGTTTCCAAGGCGGTGAGGAAGATATTATAATAATATCTACTGTGAGATCAAATGGAAGTGGTAATATCGGTTTTCTTTCAAATAGACAAAGAGCTAATGTTGCAATGACAAGGGCTAGATATTGTCTTTGGATATTAGGCAATGCATCTACTTTAGCCAGTAGTGATTCTATCTGGAGAAAGTTAATTATTGATGCTAAGAGAAGAGACTGTTATCATAATGCTGACGAGGACATGAAACTGGCTCGAGTTATTGATGATGTCTTGCTTGAGATTGAACTTCTTGAAGAATCTGAGTCAACATTTAAGAAACTCAGTCTATGTGAAAAATCTGAAATTGATGCTATACTTCCTCAAGGTCAAGGAAACCTAGGGGCCCAAGTTTGA

Protein sequence

>MsG0580028719.01.T01

MAMVMENRENYEKTSLGMSSGWVYLYLRYSSRTRILKSGKTQTESKWGKSSQIEFGSDEYSRQIMEKSRNGSGSLIDIVLSWTLEDVLNENLYEDKVHKIPETFKSATDYKNSFPLLFEETRADLSSSLSGVSQAALCEIKNVEHSKHLKLHKSQNQFIQFHHTIWLESTTESDRDENGENYEPASGDLIAITYIRPKSLNDLNTLNSPYHIAYVNGVKNIFSGRITVLSSKCMKMDVESVSMKNNTQKMYAVYIMNMTTNVRIWKALNSKSKGDHLNIIEKVLQPNLNSGENCKICMSRSNSKASFITKDIIRSHNLNESQQDAVTSCASMVDCSHANTKLIWGPPGTGKTKSVACLLFSLLKLKSRTLACAPTNTAVLQVATRLHSLVTDSLDDDTYGLSDIVLFGNNKRMKVESYPGLEDIFLDYRVKNLMQCYAEWKHSFEAMIEFLSDPSKQYFLEMSKKDFVMDKNRILASAYHAYKISKGNYGLIMRFEDYVQKARTEITKLYQLVENDKKKCMLTIERFVKQRIDKLRMNKGYVKRARKEIIELYQSIMTMEQFVKQRFGKLSEKLKFLIHTLCTHMPKSFISVNNMLQALDLLKSMEISLSQAKFKQTVDDCEEESIPACFGPSSLERNDCLRILSFLSNSISLPEFKVRHQVEKFCWSNASLILCTVSSSVKLYSEETSPVKFLVIDEAAQLKECESMIPLQLPGLQHCILIGDEKQLPALVKSKIADNCRFGRSMFERLEKVKQDTWDSNSDFSVNVRSVDGFQGGEEDIIIISTVRSNGSGNIGFLSNRQRANVAMTRARYCLWILGNASTLASSDSIWRKLIIDAKRRDCYHNADEDMKLARVIDDVLLEIELLEESESTFKKLSLCEKSEIDAILPQGQGNLGAQV*