AlfalfaGEDB | MsG0880044636.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044636.01

KEGG: -
GO: GO:0004672 GO:0004674 GO:0005524 GO:0006468
PFAM: PF01453 PF07714 PF08276

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044636.01.T01	XP_024627385.1	95.611	524	23	0	233	756	306	829	0	1050
MsG0880044636.01.T01	XP_024627385.1	95.238	168	8	0	66	233	50	217	2.05E-100	339

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044636.01.T01	O81833	53.626	524	216	5	238	756	314	815	0	545

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044636.01.T01	A0A396GIN1	95.229	524	22	1	233	756	306	826	0.0	1040

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0880044636.01	0.820057	8.384657e-53	6.565219e-50
MsG0080048059.01	MsG0880044636.01	0.806192	9.266806e-50	4.998568e-47
MsG0080048068.01	MsG0880044636.01	0.844183	8.850852e-59	1.417627e-55
MsG0080048198.01	MsG0880044636.01	0.824140	9.486331e-54	8.331613e-51
MsG0080048273.01	MsG0880044636.01	0.859705	3.438496e-63	9.164159e-60
MsG0080048274.01	MsG0880044636.01	0.852553	4.281234e-61	8.978011e-58
MsG0080048401.01	MsG0880044636.01	0.805121	1.555753e-49	8.164099e-47
MsG0080048505.01	MsG0880044636.01	0.834707	2.565260e-56	3.068356e-53
MsG0080048528.01	MsG0880044636.01	0.853341	2.548491e-61	5.488627e-58
MsG0080048780.01	MsG0880044636.01	0.831084	2.040094e-55	2.190737e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044636.01.T01	MTR_8g465510	87.023	524	17	1	233	756	306	778	0.0	935
MsG0880044636.01.T01	MTR_8g465510	95.238	168	8	0	66	233	50	217	1.31e-104	338
MsG0880044636.01.T01	MTR_0090s0020	59.280	528	195	5	235	756	302	815	0.0	640
MsG0880044636.01.T01	MTR_0090s0020	56.395	172	68	3	66	236	50	215	8.04e-50	188
MsG0880044636.01.T01	MTR_8g465980	45.950	753	293	13	66	731	52	777	0.0	619
MsG0880044636.01.T01	MTR_3g007650	57.116	541	212	7	229	756	309	842	0.0	613
MsG0880044636.01.T01	MTR_3g007650	54.545	176	71	5	66	233	55	229	2.76e-48	184
MsG0880044636.01.T01	MTR_3g007510	55.877	553	221	10	215	756	294	834	0.0	609
MsG0880044636.01.T01	MTR_3g007510	56.818	176	67	5	66	233	53	227	3.14e-50	189
MsG0880044636.01.T01	MTR_3g007630	54.463	549	222	8	215	753	294	824	0.0	608

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044636.01.T01	AT4G27300	53.626	524	216	5	238	756	314	815	0.0	545
MsG0880044636.01.T01	AT4G27300	37.278	169	94	6	72	235	62	223	1.27e-19	94.7
MsG0880044636.01.T01	AT4G27290	51.220	533	240	7	234	756	307	829	1.06e-180	538
MsG0880044636.01.T01	AT4G27290	46.784	171	85	2	66	233	52	219	7.92e-39	155
MsG0880044636.01.T01	AT1G11330	39.130	805	352	22	66	756	60	840	4.36e-175	524
MsG0880044636.01.T01	AT1G11330	39.356	808	348	23	66	756	60	842	8.09e-175	523
MsG0880044636.01.T01	AT4G21380	48.094	551	244	6	235	756	313	850	9.67e-174	521
MsG0880044636.01.T01	AT4G21380	47.305	167	86	2	67	233	60	224	1.33e-38	154
MsG0880044636.01.T01	AT4G27290	49.434	530	208	5	234	756	307	783	3.66e-171	512
MsG0880044636.01.T01	AT4G27290	46.784	171	85	2	66	233	52	219	9.91e-39	154

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Find 145 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAACTCCAAATTAAG+AGG	0.452629	8:+46055401	MsG0880044636.01.T01:CDS
AAAAGCCAAGAACCTTAACT+AGG	0.579181	8:-46056089	None:intergenic
AAACTTGGTGAAGGTGGTTT+TGG	0.288442	8:+46055826	MsG0880044636.01.T01:CDS
AAATCTGATGTATATAGCTT+TGG	0.418777	8:+46056664	MsG0880044636.01.T01:CDS
AACACTAACATCCTTGGAAA+TGG	0.401721	8:+46054590	MsG0880044636.01.T01:CDS
AACATCCTTGGAAATGGAAG+TGG	0.523213	8:+46054596	MsG0880044636.01.T01:CDS
AACTGGGATGACCCTTCTTC+AGG	0.347904	8:+46053958	MsG0880044636.01.T01:CDS
AACTTCATAGCAAGGCTCTT+AGG	0.368393	8:+46053778	MsG0880044636.01.T01:CDS
AAGAAGTGACAATCCTGAAT+CGG	0.500175	8:+46054002	MsG0880044636.01.T01:CDS
AAGCATCACAATTAATGAAG+TGG	0.549739	8:-46055345	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAACTCCAAATTAAG+AGG	+	Chr8:46055401-46055420	MsG0880044636.01.T01:CDS	30.0%
AAGCATCACAATTAATGAAG+TGG	-	Chr8:46055348-46055367	None:intergenic	30.0%
AATCAACGAATTTAAGAACG+AGG	+	Chr8:46056035-46056054	MsG0880044636.01.T01:CDS	30.0%
AATCACAGCTACAATCTTAT+TGG	+	Chr8:46056742-46056761	MsG0880044636.01.T01:CDS	30.0%
AGAAATGTAAGGGTAAATGT+TGG	+	Chr8:46054540-46054559	MsG0880044636.01.T01:CDS	30.0%
AGTGTATACTTCATTTCATG+TGG	+	Chr8:46052089-46052108	MsG0880044636.01.T01:intron	30.0%
ATATTGAGCGTAAACAAAGA+AGG	+	Chr8:46053682-46053701	MsG0880044636.01.T01:CDS	30.0%
ATCAACAAAGTGCACAATTA+CGG	+	Chr8:46052465-46052484	MsG0880044636.01.T01:intron	30.0%
ATCACAGCTACAATCTTATT+GGG	+	Chr8:46056743-46056762	MsG0880044636.01.T01:CDS	30.0%
ATGACACTTGAGAAATGTAA+GGG	+	Chr8:46054530-46054549	MsG0880044636.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	46051511	46057130	46051511	ID=MsG0880044636.01;Name=MsG0880044636.01
Chr8	mRNA	46051511	46057130	46051511	ID=MsG0880044636.01.T01;Parent=MsG0880044636.01;Name=MsG0880044636.01.T01;_AED=0.27;_eAED=0.27;_QI=0\|0\|0\|1\|0.75\|0.55\|9\|0\|756
Chr8	exon	46051511	46051707	46051511	ID=MsG0880044636.01.T01:exon:18612;Parent=MsG0880044636.01.T01
Chr8	exon	46053573	46054072	46053573	ID=MsG0880044636.01.T01:exon:18613;Parent=MsG0880044636.01.T01
Chr8	exon	46054339	46054710	46054339	ID=MsG0880044636.01.T01:exon:18614;Parent=MsG0880044636.01.T01
Chr8	exon	46055270	46055422	46055270	ID=MsG0880044636.01.T01:exon:18615;Parent=MsG0880044636.01.T01
Chr8	exon	46055704	46055861	46055704	ID=MsG0880044636.01.T01:exon:18616;Parent=MsG0880044636.01.T01
Chr8	exon	46055973	46056183	46055973	ID=MsG0880044636.01.T01:exon:18617;Parent=MsG0880044636.01.T01
Chr8	exon	46056290	46056527	46056290	ID=MsG0880044636.01.T01:exon:18618;Parent=MsG0880044636.01.T01
Chr8	exon	46056618	46056768	46056618	ID=MsG0880044636.01.T01:exon:18619;Parent=MsG0880044636.01.T01
Chr8	exon	46056840	46057130	46056840	ID=MsG0880044636.01.T01:exon:18620;Parent=MsG0880044636.01.T01
Chr8	CDS	46051511	46051707	46051511	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46053573	46054072	46053573	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46054339	46054710	46054339	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46055270	46055422	46055270	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46055704	46055861	46055704	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46055973	46056183	46055973	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46056290	46056527	46056290	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46056618	46056768	46056618	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01
Chr8	CDS	46056840	46057130	46056840	ID=MsG0880044636.01.T01:cds;Parent=MsG0880044636.01.T01

Gene Sequence

>MsG0880044636.01.T01

ATGGACGATGACAAAGAATTTATAGACGCAATAACAGAGGCAAGTCTTTGGGGAACCTGTAGTTATTTGCGTAGTCTCTTTGCAACATTGATGATGTCTGGTCAACTAGCCAGACCAGAGGTTGTTTGGAATTCTACTCCGATTACTTTGATTGATTACATTTTGCACAAACAAAGGCGGGTTACTTGGAGCTCCAGTCCTGGTAGTTCCACAAACCGCTATGTAGGAATTTGGTTCAAAAATATCCCTATAAAAACAGTTGTTTGGGTAGCCAATCGCGACAATCCAATCAGTGACAAATCCGGCATATTGAGCGTAAACAAAGAAGGAAACCTTGTTCTTCTCAGCAAAAATGGCACAACTCATTGGTCAACAAATGTAACAACCAAACCTTCAACCTCAAACTTCATAGCAAGGCTCTTAGGTACTGGAAACTTGGTTGTAAATGATGAGAAAGACCATAGTGATCATGGCTTTTACTTATGGCAGAGCTTTGACTATCCTACTGATACAATTCTTCCAGGAATGAAGCTTGGTTGGAACCTAACAAGCGGTCTTAATAGGCAACTAACAGCTTGGAAAAACTGGGATGACCCTTCTTCAGGTCAAATGACTTATGGCTTCATAAGAAGTGACAATCCTGAATCGGAGATAAGGAATGGTTCGTCGATGATATACCGAAGTGGACCTTTTAATGGCAAGTCCTCAATGTGTGAGTGTTTAACTGGATTCACTCCAAAATCGCCTCGAAATTGGAGTGAAAAGAACTGGAGTCAAGGATGTGTGCATAATGAAACTTGGAGGTGTAGAGAGAAAAATAAAGATGGCTTCATAAAATTTCAAAGTGTGAAGGTTCCAGACACAAAGCAATCTTGGATAGATAGAAGCATGACACTTGAGAAATGTAAGGGTAAATGTTGGGAGAATTGTTCATGTACAGCTTATGCAAACACTAACATCCTTGGAAATGGAAGTGGTTGCATCCTTTGGTTTGGTGATCTTTTGGACTTGAGAGAATTACCAGATGCTGGACAAGATCTATATGTTAGATCCCCTGTCTCCGAAACAGCAAACCGAGATAAAGTAGCTGCGACTCAAGGAAATCGATATGGTTCAAGGAAAATGGTAATTGTGGTCTCAAGTACCACTTCATTAATTGTGATGCTTTTGATATTCATCACGTTTTTTTGTTGGAGGAGAAAAACCAACTCCAAATTAAGAGAGGAAACAAGAATCATGAAGACAAAAGTAAAGAGAAGTGAAATGAAACAAGAAGATTTGGAACTTCCTTTGTTTGACTTTGGTATAATAACATTTGCCACTAATGACTTCTCAAATGACAACAAACTTGGTGAAGGTGGTTTTGGTCCTGTGTATAAGGGCACACTACCAGATGGACAAGATATAGCAGTTAAACGACTTTCACATACCTCTACTCAAGGAATCAACGAATTTAAGAACGAGGTTGTGTTTTGTTCCAAACTCCAACATAGGAACCTAGTTAAGGTTCTTGGCTTTTGCATTGAAGAACATGAGAAATTACTCATCTATGAATATATGCCCAATAAAAGCTTAGACTTCTTTCTTTTTGATTCGTCTCGAAGTAAAGTTTTAGATTGGTATACGCGGTTCAACATTATAGGTGGTATCGCTAGAGGACTCCTTTACCTTCACCAGGACTCTAGATTAAGGATCATACATCGAGATTTAAAAGCGAGTAATATTTTATTAGATAATGATTTGAGTCCAAAAATATCTGATTTCGGCCTAGCTCGAATGTGTGGAGGTGATCAGATTCAAGGAAACACAAGTAGAGTTGTTGGTACATATGGCTATATGGCACCCGAATATGCGATCGATGGGATATTCTCCATCAAATCTGATGTATATAGCTTTGGAATTTTATTGTTAGAGATTATAAATGGAAACAAAAATAAAGGACTTTCCTATTCAAATCACAGCTACAATCTTATTGGGCATGCATGGAGATTGTGGAAAGAATGCATCCCAATGGAATTTTTGGATACTTGTTTGGAAGAGGGTTCAAACATTCAATCTGAAGTGTTAAGATGCATTCATATTGGTCTTCTATGTGTGCAGCAATATCCAAATGACAGACCAACTATGACATCTGTGCTTGTTATGCTAACTAGTGATAGCACTCTACCCCAACCAAAAGAGCCTATCTTCTTAACTGATGAATATACTTCTGATCAGAAGATTTCCTATTCAACAAATGAAGTATCTATGACAATGTTGGAACCTAGATAG

Protein sequence

>MsG0880044636.01.T01

MDDDKEFIDAITEASLWGTCSYLRSLFATLMMSGQLARPEVVWNSTPITLIDYILHKQRRVTWSSSPGSSTNRYVGIWFKNIPIKTVVWVANRDNPISDKSGILSVNKEGNLVLLSKNGTTHWSTNVTTKPSTSNFIARLLGTGNLVVNDEKDHSDHGFYLWQSFDYPTDTILPGMKLGWNLTSGLNRQLTAWKNWDDPSSGQMTYGFIRSDNPESEIRNGSSMIYRSGPFNGKSSMCECLTGFTPKSPRNWSEKNWSQGCVHNETWRCREKNKDGFIKFQSVKVPDTKQSWIDRSMTLEKCKGKCWENCSCTAYANTNILGNGSGCILWFGDLLDLRELPDAGQDLYVRSPVSETANRDKVAATQGNRYGSRKMVIVVSSTTSLIVMLLIFITFFCWRRKTNSKLREETRIMKTKVKRSEMKQEDLELPLFDFGIITFATNDFSNDNKLGEGGFGPVYKGTLPDGQDIAVKRLSHTSTQGINEFKNEVVFCSKLQHRNLVKVLGFCIEEHEKLLIYEYMPNKSLDFFLFDSSRSKVLDWYTRFNIIGGIARGLLYLHQDSRLRIIHRDLKASNILLDNDLSPKISDFGLARMCGGDQIQGNTSRVVGTYGYMAPEYAIDGIFSIKSDVYSFGILLLEIINGNKNKGLSYSNHSYNLIGHAWRLWKECIPMEFLDTCLEEGSNIQSEVLRCIHIGLLCVQQYPNDRPTMTSVLVMLTSDSTLPQPKEPIFLTDEYTSDQKISYSTNEVSMTMLEPR*