AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023422.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023422.01.T01 MTR_8g092680 90.854 164 9 2 1 164 10 167 2.40e-102 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023422.01.T01 AT5G09820 48.765 162 64 3 12 161 21 175 8.59e-40 135
MsG0480023422.01.T01 AT5G09820 48.765 162 64 3 12 161 21 175 2.52e-39 135
MsG0480023422.01.T01 AT5G09820 48.765 162 64 3 12 161 21 175 3.64e-39 135

Find 62 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCACTATCTCTATTT+TGG 0.111980 4:-85038722 MsG0480023422.01.T01:CDS
GAAGTTAGAAATTGAAAGTT+TGG 0.249564 4:-85039047 MsG0480023422.01.T01:CDS
GGAATCAACAGAGGGATATT+TGG 0.264142 4:-85039085 MsG0480023422.01.T01:CDS
ATCATGAAACTTCAAAGATT+TGG 0.272932 4:-85039388 MsG0480023422.01.T01:CDS
TGTTGGCCATGTTTCATTCT+AGG 0.280611 4:-85037198 MsG0480023422.01.T01:three_prime_UTR
TGGATAAACACTTCAAGATT+TGG 0.298180 4:-85039346 MsG0480023422.01.T01:CDS
TCTAGTTCTAGAGTTGGTTC+TGG 0.326515 4:+85038995 None:intergenic
TTGAAGTTTCATGATATTCA+TGG 0.326931 4:+85039396 None:intergenic
GATTTGGTGAGAAGCCATTA+TGG 0.349218 4:-85039330 MsG0480023422.01.T01:CDS
AAAGTTGCAGAACAATCTTC+TGG 0.358341 4:-85039286 MsG0480023422.01.T01:CDS
CCAATGCAATAAAGTCTCTT+AGG 0.361573 4:+85038677 None:intergenic
GACCACCTAGTAATCTTTCA+TGG 0.363929 4:-85039366 MsG0480023422.01.T01:CDS
CTAAGAGACTTTATTGCATT+GGG 0.375979 4:-85038676 MsG0480023422.01.T01:CDS
GCAACTTTAATGATAGTAAT+GGG 0.377037 4:+85039301 None:intergenic
TCTAGAGTTGGTTCTGGAGT+TGG 0.385057 4:+85039001 None:intergenic
GGATCAAGAAGGACAAAGTT+AGG 0.406396 4:-85038700 MsG0480023422.01.T01:CDS
GTGATCAAGTTCAATGCAAA+AGG 0.408117 4:-85037963 MsG0480023422.01.T01:CDS
CCTAAGAGACTTTATTGCAT+TGG 0.415989 4:-85038677 MsG0480023422.01.T01:CDS
CGAAGTTTGTTTCGACATAG+TGG 0.440289 4:-85037251 MsG0480023422.01.T01:three_prime_UTR
GGAAGGTGGATGGGTGTTGG+AGG 0.446955 4:-85038750 MsG0480023422.01.T01:intron
TGCAACTTTAATGATAGTAA+TGG 0.449400 4:+85039300 None:intergenic
TCCACTTGTATCCATTGTGT+TGG 0.450555 4:-85037215 MsG0480023422.01.T01:three_prime_UTR
AAGAGAGCTTTACCAGGCTC+TGG 0.452031 4:-85039224 MsG0480023422.01.T01:CDS
TGATTCTCATGTGAGTCCTC+TGG 0.455246 4:-85039428 MsG0480023422.01.T01:CDS
GTAATGGGTCTAAACCATAA+TGG 0.465210 4:+85039316 None:intergenic
CAAAGGCAATATCTTTGTGT+TGG 0.468289 4:-85037400 MsG0480023422.01.T01:three_prime_UTR
GGGATATTTGGAATTCCATC+TGG 0.474487 4:-85039073 MsG0480023422.01.T01:CDS
GTTGATGACAACATGAGAAT+AGG 0.478063 4:-85037432 MsG0480023422.01.T01:three_prime_UTR
TTTATCCATGAAAGATTACT+AGG 0.478881 4:+85039361 None:intergenic
ACTGGAAGGTGGATGGGTGT+TGG 0.486174 4:-85038753 MsG0480023422.01.T01:intron
GCAGAACAATCTTCTGGCTA+TGG 0.491323 4:-85039280 MsG0480023422.01.T01:CDS
ACCTTCTCTAGTTCTAGAGT+TGG 0.492031 4:+85038989 None:intergenic
GACAAAATTACTTTCCGTGA+AGG 0.498911 4:+85037321 None:intergenic
TTCTATTACTGGAAGGTGGA+TGG 0.515531 4:-85038760 MsG0480023422.01.T01:intron
ATTTCTAACTTCTTGCCAGA+TGG 0.516677 4:+85039058 None:intergenic
AGATGCTACCTTCCAGAGCC+TGG 0.516686 4:+85039212 None:intergenic
ATGGGTAAACAAGTGTTTGA+AGG 0.522700 4:-85039106 MsG0480023422.01.T01:intron
TCTATTACTGGAAGGTGGAT+GGG 0.533432 4:-85038759 MsG0480023422.01.T01:intron
TCGAAACAAACTTCGAATCC+CGG 0.559452 4:+85037259 None:intergenic
GAAGTTTGTTTCGACATAGT+GGG 0.564277 4:-85037250 MsG0480023422.01.T01:three_prime_UTR
ACAATGGATACAAGTGGAAG+GGG 0.569905 4:+85037220 None:intergenic
CACAATGGATACAAGTGGAA+GGG 0.576982 4:+85037219 None:intergenic
ACCAACTCTAGAACTAGAGA+AGG 0.579053 4:-85038990 MsG0480023422.01.T01:intron
GAGCTTTACCAGGCTCTGGA+AGG 0.579893 4:-85039220 MsG0480023422.01.T01:intron
TGATCAAGTTCAATGCAAAA+GGG 0.581171 4:-85037962 MsG0480023422.01.T01:CDS
ATGACAACATGAGAATAGGA+AGG 0.590421 4:-85037428 MsG0480023422.01.T01:three_prime_UTR
ATGAAACATGGCCAACACAA+TGG 0.596822 4:+85037204 None:intergenic
GAAGAAAAGAGAGCTTTACC+AGG 0.603570 4:-85039230 MsG0480023422.01.T01:CDS
TTAGTTGAAGATGAAGCACT+TGG 0.610602 4:-85039256 MsG0480023422.01.T01:CDS
TCAGACTATTGATAAAGCCA+AGG 0.616602 4:-85038644 MsG0480023422.01.T01:intron
GCCAACACAATGGATACAAG+TGG 0.626649 4:+85037214 None:intergenic
ACACAATGGATACAAGTGGA+AGG 0.627896 4:+85037218 None:intergenic
TGACAACATGAGAATAGGAA+GGG 0.637950 4:-85037427 MsG0480023422.01.T01:three_prime_UTR
CTTTCCGTGAAGGAAACATG+TGG 0.639124 4:+85037331 None:intergenic
TGTTTGAAGGAATCAACAGA+GGG 0.671880 4:-85039093 MsG0480023422.01.T01:CDS
AGAATAGGAAGGGATGACAA+AGG 0.678331 4:-85037417 MsG0480023422.01.T01:three_prime_UTR
AAAGGGTTGATATTGTTGTG+TGG 0.686655 4:-85037945 MsG0480023422.01.T01:CDS
GTGTTTGAAGGAATCAACAG+AGG 0.696259 4:-85039094 MsG0480023422.01.T01:CDS
TTCATGGTTCTACAAACCAG+AGG 0.699055 4:+85039412 None:intergenic
ATACTTCCTAGAATGAAACA+TGG 0.703196 4:+85037192 None:intergenic
ATCCATGAAAGATTACTAGG+TGG 0.706915 4:+85039364 None:intergenic
TTTGAAAATGAAGAGCAAAG+CGG 0.731147 4:-85037991 MsG0480023422.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGAAAATTAATTAAACAT+AGG + Chr4:85038769-85038788 None:intergenic 15.0%
!! GAAAAATTATGATATTTGTT+GGG - Chr4:85038819-85038838 MsG0480023422.01.T01:intron 15.0%
!! GTTTAAAAAAATTGTGATTT+AGG + Chr4:85037628-85037647 None:intergenic 15.0%
!! TTATTGAGTTTAATTAAACA+TGG - Chr4:85038428-85038447 MsG0480023422.01.T01:intron 15.0%
!! AGAAGTTAAATAGTAGTATT+TGG + Chr4:85038621-85038640 None:intergenic 20.0%
!! GGAAAAATTATGATATTTGT+TGG - Chr4:85038818-85038837 MsG0480023422.01.T01:intron 20.0%
!!! AAAGAGTAATTTGTTTGAAA+TGG - Chr4:85037325-85037344 MsG0480023422.01.T01:three_prime_UTR 20.0%
!!! AAGAGTAATTTGTTTGAAAT+GGG - Chr4:85037326-85037345 MsG0480023422.01.T01:three_prime_UTR 20.0%
!!! CAATTGTTTTACAAATTAGA+GGG - Chr4:85038096-85038115 MsG0480023422.01.T01:intron 20.0%
!!! GTCTCTATTTTTTTTTTCTT+GGG - Chr4:85039368-85039387 MsG0480023422.01.T01:CDS 20.0%
!!! TCAATTGTTTTACAAATTAG+AGG - Chr4:85038095-85038114 MsG0480023422.01.T01:intron 20.0%
!!! TGTCTCTATTTTTTTTTTCT+TGG - Chr4:85039367-85039386 MsG0480023422.01.T01:CDS 20.0%
! AAAAATACGAACTTTGTGAT+TGG + Chr4:85037949-85037968 None:intergenic 25.0%
! AAAACCAATCAACGAAAATT+AGG + Chr4:85038882-85038901 None:intergenic 25.0%
! AAAATACTAAGCTTGAAATC+TGG - Chr4:85038216-85038235 MsG0480023422.01.T01:intron 25.0%
! AAAATAGACGAGATATTATG+TGG + Chr4:85038402-85038421 None:intergenic 25.0%
! ATCATGAAACTTCAAAGATT+TGG - Chr4:85037062-85037081 MsG0480023422.01.T01:three_prime_UTR 25.0%
! ATCTCTAAGTCAAAAGAAAA+AGG + Chr4:85037873-85037892 None:intergenic 25.0%
! ATGTGGAAAACAAAAAAGAA+CGG + Chr4:85039105-85039124 None:intergenic 25.0%
! GAAGTTAGAAATTGAAAGTT+TGG - Chr4:85037403-85037422 MsG0480023422.01.T01:three_prime_UTR 25.0%
! GCAACTTTAATGATAGTAAT+GGG + Chr4:85037152-85037171 None:intergenic 25.0%
! TCTCTAAGTCAAAAGAAAAA+GGG + Chr4:85037872-85037891 None:intergenic 25.0%
! TGCAACTTTAATGATAGTAA+TGG + Chr4:85037153-85037172 None:intergenic 25.0%
! TTACTTAGCAAAAACAAAGA+AGG - Chr4:85039425-85039444 MsG0480023422.01.T01:CDS 25.0%
! TTGAAGTTTCATGATATTCA+TGG + Chr4:85037057-85037076 None:intergenic 25.0%
! TTTATCCATGAAAGATTACT+AGG + Chr4:85037092-85037111 None:intergenic 25.0%
!! AAAGTAATTTTGTCGAAACA+TGG - Chr4:85039138-85039157 MsG0480023422.01.T01:intron 25.0%
!! AATCTACAAGCTTAGTATTT+TGG + Chr4:85038175-85038194 None:intergenic 25.0%
!! ATCAATGTTTTATGTCTTTG+CGG + Chr4:85037598-85037617 None:intergenic 25.0%
!! TATAGCACTATCTCTATTTT+GGG - Chr4:85037729-85037748 MsG0480023422.01.T01:intron 25.0%
!! TATCATAATTTTTCCGAAAC+AGG + Chr4:85038813-85038832 None:intergenic 25.0%
!! TCATGTTATGTTTCTATTAC+TGG - Chr4:85037679-85037698 MsG0480023422.01.T01:intron 25.0%
!! TTATAGCACTATCTCTATTT+TGG - Chr4:85037728-85037747 MsG0480023422.01.T01:intron 25.0%
!!! AAGCTTAGTATTTTGGATTT+TGG + Chr4:85038168-85038187 None:intergenic 25.0%
!!! ACTTTCTACGATAGTTTTTT+CGG + Chr4:85038278-85038297 None:intergenic 25.0%
ATACTTCCTAGAATGAAACA+TGG + Chr4:85039261-85039280 None:intergenic 30.0%
CTAAGAGACTTTATTGCATT+GGG - Chr4:85037774-85037793 MsG0480023422.01.T01:intron 30.0%
CTAGAAATTAAGAGCAAACA+CGG + Chr4:85037997-85038016 None:intergenic 30.0%
GACATAAAACATTGATATCG+AGG - Chr4:85037602-85037621 MsG0480023422.01.T01:intron 30.0%
GACTCAAACTTTAACAATGT+AGG + Chr4:85038320-85038339 None:intergenic 30.0%
GTTAAAACTGGTTAACAAAG+TGG - Chr4:85037302-85037321 MsG0480023422.01.T01:three_prime_UTR 30.0%
TAAATCTCCTACTCTTTGTT+TGG - Chr4:85038571-85038590 MsG0480023422.01.T01:intron 30.0%
TATCGTAGAAAGTGAACTAT+AGG - Chr4:85038285-85038304 MsG0480023422.01.T01:intron 30.0%
TCTTTGTAATATACCTGATC+AGG + Chr4:85038695-85038714 None:intergenic 30.0%
TGATCAAGTTCAATGCAAAA+GGG - Chr4:85038488-85038507 MsG0480023422.01.T01:intron 30.0%
TGGATAAACACTTCAAGATT+TGG - Chr4:85037104-85037123 MsG0480023422.01.T01:three_prime_UTR 30.0%
TTCTACTTCAAATTCACAGA+GGG - Chr4:85038637-85038656 MsG0480023422.01.T01:intron 30.0%
TTGTGAGCTATTGTTAAAAC+TGG - Chr4:85037290-85037309 MsG0480023422.01.T01:three_prime_UTR 30.0%
TTTGAAAATGAAGAGCAAAG+CGG - Chr4:85038459-85038478 MsG0480023422.01.T01:intron 30.0%
! AGTACATTCCTTTTTGTTCT+TGG - Chr4:85038719-85038738 MsG0480023422.01.T01:CDS 30.0%
! AGTAGGAGATTTAACTGTTT+TGG + Chr4:85038564-85038583 None:intergenic 30.0%
! GTATCCTAATTTTCGTTGAT+TGG - Chr4:85038875-85038894 MsG0480023422.01.T01:intron 30.0%
! GTTATGTTTCTATTACTGGA+AGG - Chr4:85037683-85037702 MsG0480023422.01.T01:intron 30.0%
! GTTTTACAAATTAGAGGGTT+TGG - Chr4:85038101-85038120 MsG0480023422.01.T01:intron 30.0%
! TTGATTAGCCAAGAACAAAA+AGG + Chr4:85038730-85038749 None:intergenic 30.0%
!!! AGTTTTTTCGGTTCTAATTC+TGG + Chr4:85038266-85038285 None:intergenic 30.0%
AAAGCAACCAAACAAAGAGT+AGG + Chr4:85038581-85038600 None:intergenic 35.0%
AAAGTTGCAGAACAATCTTC+TGG - Chr4:85037164-85037183 MsG0480023422.01.T01:three_prime_UTR 35.0%
ATCCATGAAAGATTACTAGG+TGG + Chr4:85037089-85037108 None:intergenic 35.0%
ATGACAACATGAGAATAGGA+AGG - Chr4:85039022-85039041 MsG0480023422.01.T01:CDS 35.0%
ATGAGAGTTCTCGTTAAATG+TGG - Chr4:85037542-85037561 MsG0480023422.01.T01:intron 35.0%
ATGGGTAAACAAGTGTTTGA+AGG - Chr4:85037344-85037363 MsG0480023422.01.T01:three_prime_UTR 35.0%
ATTTCTAACTTCTTGCCAGA+TGG + Chr4:85037395-85037414 None:intergenic 35.0%
CAAAGGCAATATCTTTGTGT+TGG - Chr4:85039050-85039069 MsG0480023422.01.T01:CDS 35.0%
CCAATGCAATAAAGTCTCTT+AGG + Chr4:85037776-85037795 None:intergenic 35.0%
CCTAAGAGACTTTATTGCAT+TGG - Chr4:85037773-85037792 MsG0480023422.01.T01:intron 35.0%
CTTCTACTTCAAATTCACAG+AGG - Chr4:85038636-85038655 MsG0480023422.01.T01:intron 35.0%
GACAAAATTACTTTCCGTGA+AGG + Chr4:85039132-85039151 None:intergenic 35.0%
GTGATCAAGTTCAATGCAAA+AGG - Chr4:85038487-85038506 MsG0480023422.01.T01:intron 35.0%
TCAGACTATTGATAAAGCCA+AGG - Chr4:85037806-85037825 MsG0480023422.01.T01:intron 35.0%
TCTCATAATATCAAGAGTCG+TGG + Chr4:85037528-85037547 None:intergenic 35.0%
TGACAACATGAGAATAGGAA+GGG - Chr4:85039023-85039042 MsG0480023422.01.T01:CDS 35.0%
TGTTTGAAGGAATCAACAGA+GGG - Chr4:85037357-85037376 MsG0480023422.01.T01:three_prime_UTR 35.0%
TTTGGAAGCAATCTTGAATG+AGG + Chr4:85038546-85038565 None:intergenic 35.0%
! AATTTTGTCGAAACATGGTC+AGG - Chr4:85039143-85039162 MsG0480023422.01.T01:intron 35.0%
! ATGTTTCTATTACTGGAAGG+TGG - Chr4:85037686-85037705 MsG0480023422.01.T01:intron 35.0%
! GAAGTTTGTTTCGACATAGT+GGG - Chr4:85039200-85039219 MsG0480023422.01.T01:intron 35.0%
! TTAGTTGAAGATGAAGCACT+TGG - Chr4:85037194-85037213 MsG0480023422.01.T01:three_prime_UTR 35.0%
! TTGTAGACACTTTTATCAGC+CGG - Chr4:85039172-85039191 MsG0480023422.01.T01:intron 35.0%
! TTTTCCACATGTTTCCTTCA+CGG - Chr4:85039115-85039134 MsG0480023422.01.T01:intron 35.0%
!! AAAGGGTTGATATTGTTGTG+TGG - Chr4:85038505-85038524 MsG0480023422.01.T01:intron 35.0%
!! CTGGATTGTTTGATTTTGAC+CGG - Chr4:85038235-85038254 MsG0480023422.01.T01:intron 35.0%
!! GTAATGGGTCTAAACCATAA+TGG + Chr4:85037137-85037156 None:intergenic 35.0%
!! GTTGATGACAACATGAGAAT+AGG - Chr4:85039018-85039037 MsG0480023422.01.T01:CDS 35.0%
!!! TCTCTATTTTGGGATCAAGA+AGG - Chr4:85037739-85037758 MsG0480023422.01.T01:intron 35.0%
ACAATGGATACAAGTGGAAG+GGG + Chr4:85039233-85039252 None:intergenic 40.0%
ACACAATGGATACAAGTGGA+AGG + Chr4:85039235-85039254 None:intergenic 40.0%
AGAATAGGAAGGGATGACAA+AGG - Chr4:85039033-85039052 MsG0480023422.01.T01:CDS 40.0%
AGTGCGTTGTATTTGTACCT+TGG + Chr4:85037826-85037845 None:intergenic 40.0%
ATGAAACATGGCCAACACAA+TGG + Chr4:85039249-85039268 None:intergenic 40.0%
CACAATGGATACAAGTGGAA+GGG + Chr4:85039234-85039253 None:intergenic 40.0%
GAAGAAAAGAGAGCTTTACC+AGG - Chr4:85037220-85037239 MsG0480023422.01.T01:three_prime_UTR 40.0%
GACCACCTAGTAATCTTTCA+TGG - Chr4:85037084-85037103 MsG0480023422.01.T01:three_prime_UTR 40.0%
GAGAAGGTAACTTCATGTCA+AGG - Chr4:85037476-85037495 MsG0480023422.01.T01:intron 40.0%
GGAATCAACAGAGGGATATT+TGG - Chr4:85037365-85037384 MsG0480023422.01.T01:three_prime_UTR 40.0%
GGATCAAGAAGGACAAAGTT+AGG - Chr4:85037750-85037769 MsG0480023422.01.T01:intron 40.0%
GTCAAGGCTTAAAATCGACA+CGG - Chr4:85037492-85037511 MsG0480023422.01.T01:intron 40.0%
GTGTTTGAAGGAATCAACAG+AGG - Chr4:85037356-85037375 MsG0480023422.01.T01:three_prime_UTR 40.0%
TCCACTTGTATCCATTGTGT+TGG - Chr4:85039235-85039254 MsG0480023422.01.T01:CDS 40.0%
TCGAAACAAACTTCGAATCC+CGG + Chr4:85039194-85039213 None:intergenic 40.0%
TCTATTACTGGAAGGTGGAT+GGG - Chr4:85037691-85037710 MsG0480023422.01.T01:intron 40.0%
TGTTGGCCATGTTTCATTCT+AGG - Chr4:85039252-85039271 MsG0480023422.01.T01:CDS 40.0%
TTCTATTACTGGAAGGTGGA+TGG - Chr4:85037690-85037709 MsG0480023422.01.T01:intron 40.0%
! CGAAGTTTGTTTCGACATAG+TGG - Chr4:85039199-85039218 MsG0480023422.01.T01:intron 40.0%
! CTCGTTAAATGTGGTTGATG+CGG - Chr4:85037551-85037570 MsG0480023422.01.T01:intron 40.0%
! GGGATATTTGGAATTCCATC+TGG - Chr4:85037377-85037396 MsG0480023422.01.T01:three_prime_UTR 40.0%
! GGTTCTAATTCTGGATTGTC+CGG + Chr4:85038257-85038276 None:intergenic 40.0%
! TGAGTCTTTTAGCACATGCA+GGG - Chr4:85038334-85038353 MsG0480023422.01.T01:intron 40.0%
! TGTAGACACTTTTATCAGCC+GGG - Chr4:85039173-85039192 MsG0480023422.01.T01:intron 40.0%
! TTCATGGTTCTACAAACCAG+AGG + Chr4:85037041-85037060 None:intergenic 40.0%
! TTGAGTCTTTTAGCACATGC+AGG - Chr4:85038333-85038352 MsG0480023422.01.T01:intron 40.0%
!! ACCAACTCTAGAACTAGAGA+AGG - Chr4:85037460-85037479 MsG0480023422.01.T01:intron 40.0%
!! ACCTTCTCTAGTTCTAGAGT+TGG + Chr4:85037464-85037483 None:intergenic 40.0%
!! CACAGTTGATGAACCTGTTT+CGG - Chr4:85038797-85038816 MsG0480023422.01.T01:intron 40.0%
!! GATTTGGTGAGAAGCCATTA+TGG - Chr4:85037120-85037139 MsG0480023422.01.T01:three_prime_UTR 40.0%
!! TCTAGTTCTAGAGTTGGTTC+TGG + Chr4:85037458-85037477 None:intergenic 40.0%
!! TTGGATTTTGGTCAGACAGA+CGG + Chr4:85038156-85038175 None:intergenic 40.0%
CATCAACTGTGCATGCAAGA+AGG + Chr4:85038788-85038807 None:intergenic 45.0%
CTTTCCGTGAAGGAAACATG+TGG + Chr4:85039122-85039141 None:intergenic 45.0%
GCCAACACAATGGATACAAG+TGG + Chr4:85039239-85039258 None:intergenic 45.0%
GGTTTAGATGTGGCTAACTG+CGG + Chr4:85038135-85038154 None:intergenic 45.0%
TACCTGATCAGGAGTGATTG+TGG + Chr4:85038684-85038703 None:intergenic 45.0%
TCAGACAGACGGTTTAGATG+TGG + Chr4:85038145-85038164 None:intergenic 45.0%
TGATTCTCATGTGAGTCCTC+TGG - Chr4:85037022-85037041 MsG0480023422.01.T01:three_prime_UTR 45.0%
TTCCACAATCACTCCTGATC+AGG - Chr4:85038679-85038698 MsG0480023422.01.T01:CDS 45.0%
TTGGGCATCTTCAATCCAGA+GGG - Chr4:85038837-85038856 MsG0480023422.01.T01:intron 45.0%
! GCAGAACAATCTTCTGGCTA+TGG - Chr4:85037170-85037189 MsG0480023422.01.T01:three_prime_UTR 45.0%
!! TCTAGAGTTGGTTCTGGAGT+TGG + Chr4:85037452-85037471 None:intergenic 45.0%
AAGAGAGCTTTACCAGGCTC+TGG - Chr4:85037226-85037245 MsG0480023422.01.T01:three_prime_UTR 50.0%
GCATCTTCAATCCAGAGGGA+TGG - Chr4:85038841-85038860 MsG0480023422.01.T01:intron 50.0%
GTTGGGCATCTTCAATCCAG+AGG - Chr4:85038836-85038855 MsG0480023422.01.T01:intron 50.0%
! GGTGTCATAAGCGGCTGTTA+TGG - Chr4:85037572-85037591 MsG0480023422.01.T01:intron 50.0%
!! GGTTGATGCGGTGTCATAAG+CGG - Chr4:85037563-85037582 MsG0480023422.01.T01:intron 50.0%
!! GTGATTTCTAGCCATCCCTC+TGG + Chr4:85038855-85038874 None:intergenic 50.0%
ACTGGAAGGTGGATGGGTGT+TGG - Chr4:85037697-85037716 MsG0480023422.01.T01:intron 55.0%
AGATGCTACCTTCCAGAGCC+TGG + Chr4:85037241-85037260 None:intergenic 55.0%
!! GAGCTTTACCAGGCTCTGGA+AGG - Chr4:85037230-85037249 MsG0480023422.01.T01:three_prime_UTR 55.0%
!! GGAAGGTGGATGGGTGTTGG+AGG - Chr4:85037700-85037719 MsG0480023422.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85037017 85039455 85037017 ID=MsG0480023422.01;Name=MsG0480023422.01
Chr4 mRNA 85037017 85039455 85037017 ID=MsG0480023422.01.T01;Parent=MsG0480023422.01;Name=MsG0480023422.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0.28|0.25|1|1|1|8|441|181
Chr4 exon 85037017 85037458 85037017 ID=MsG0480023422.01.T01:exon:6260;Parent=MsG0480023422.01.T01
Chr4 exon 85037937 85037998 85037937 ID=MsG0480023422.01.T01:exon:6259;Parent=MsG0480023422.01.T01
Chr4 exon 85038645 85038767 85038645 ID=MsG0480023422.01.T01:exon:6258;Parent=MsG0480023422.01.T01
Chr4 exon 85038991 85039115 85038991 ID=MsG0480023422.01.T01:exon:6257;Parent=MsG0480023422.01.T01
Chr4 exon 85039221 85039455 85039221 ID=MsG0480023422.01.T01:exon:6256;Parent=MsG0480023422.01.T01
Chr4 CDS 85039221 85039455 85039221 ID=MsG0480023422.01.T01:cds;Parent=MsG0480023422.01.T01
Chr4 CDS 85038991 85039115 85038991 ID=MsG0480023422.01.T01:cds;Parent=MsG0480023422.01.T01
Chr4 CDS 85038645 85038767 85038645 ID=MsG0480023422.01.T01:cds;Parent=MsG0480023422.01.T01
Chr4 CDS 85037937 85037998 85037937 ID=MsG0480023422.01.T01:cds;Parent=MsG0480023422.01.T01
Chr4 CDS 85037458 85037458 85037458 ID=MsG0480023422.01.T01:cds;Parent=MsG0480023422.01.T01
Chr4 three_prime_UTR 85037017 85037457 85037017 ID=MsG0480023422.01.T01:three_prime_utr;Parent=MsG0480023422.01.T01
Gene Sequence

>MsG0480023422.01.T01

ATGAATGATTCTCATGTGAGTCCTCTGGTTTGTAGAACCATGAATATCATGAAACTTCAAAGATTTGGACCACCTAGTAATCTTTCATGGATAAACACTTCAAGATTTGGTGAGAAGCCATTATGGTTTAGACCCATTACTATCATTAAAGTTGCAGAACAATCTTCTGGCTATGGCTTAGTTGAAGATGAAGCACTTGGACAGAAGAAAAGAGAGCTTTACCAGGCTCTGGAAGTGTTTGAAGGAATCAACAGAGGGATATTTGGAATTCCATCTGGCAAGAAGTTAGAAATTGAAAGTTTGGTGAAGCAGCTAGAATCTCAAAATCCAACTCCAGAACCAACTCTAGAACTAGAGAAGGTGGATGGGTGTTGGAGGCTTGTTTATAGCACTATCTCTATTTTGGGATCAAGAAGGACAAAGTTAGGCCTAAGAGACTTTATTGCATTGGGTGATTTCTTTCAGACTATTGATAAAGCCAAGCAAAGCGGTGAACGTGATCAAGTTCAATGCAAAAGGGTTGATATTGTTGTGTGGAGAGCTTAA

Protein sequence

>MsG0480023422.01.T01

MNDSHVSPLVCRTMNIMKLQRFGPPSNLSWINTSRFGEKPLWFRPITIIKVAEQSSGYGLVEDEALGQKKRELYQALEVFEGINRGIFGIPSGKKLEIESLVKQLESQNPTPEPTLELEKVDGCWRLVYSTISILGSRRTKLGLRDFIALGDFFQTIDKAKQSGERDQVQCKRVDIVVWRA*