AlfalfaGEDB | MsG0380011927.01

M. sativa cultivar ZhongmuNo.1 / MsG0380011927.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011927.01.T01	XP_013467304.1	96.875	96	3	0	1	96	1	96	3.43E-60	189

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011927.01.T01	I3S1M4	96.875	96	3	0	1	96	1	96	1.64e-60	189

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048383.01	MsG0380011927.01	0.823887	1.087534e-53	9.484069e-51
MsG0080048784.01	MsG0380011927.01	0.834287	3.269791e-56	3.863047e-53
MsG0080049135.01	MsG0380011927.01	0.809968	1.455783e-50	8.667905e-48
MsG0180000144.01	MsG0380011927.01	0.806038	9.987974e-50	5.366195e-47
MsG0180000611.01	MsG0380011927.01	0.863473	2.427168e-64	7.366022e-61
MsG0180000806.01	MsG0380011927.01	0.815177	1.056837e-51	7.233777e-49
MsG0180000914.01	MsG0380011927.01	0.802100	6.586103e-49	3.198477e-46
MsG0180001260.01	MsG0380011927.01	0.807183	5.723891e-50	3.167080e-47
MsG0180001599.01	MsG0380011927.01	0.807081	6.017416e-50	3.320513e-47
MsG0180002100.01	MsG0380011927.01	0.832456	9.354594e-56	1.046110e-52
MsG0180002547.01	MsG0380011927.01	0.832283	1.032815e-55	1.148956e-52
MsG0180002664.01	MsG0380011927.01	0.861977	7.018394e-64	2.022379e-60
MsG0180002794.01	MsG0380011927.01	0.815508	8.917544e-52	6.160316e-49
MsG0180003379.01	MsG0380011927.01	0.814711	1.340849e-51	9.063321e-49
MsG0180003744.01	MsG0380011927.01	0.803546	3.310530e-49	1.668326e-46
MsG0180003922.01	MsG0380011927.01	0.807258	5.519539e-50	3.059928e-47
MsG0180003932.01	MsG0380011927.01	0.809202	2.125828e-50	1.240366e-47
MsG0180004016.01	MsG0380011927.01	0.813406	2.601148e-51	1.697230e-48
MsG0180004128.01	MsG0380011927.01	0.824701	6.999135e-54	6.247364e-51
MsG0180004160.01	MsG0380011927.01	0.806154	9.442637e-50	5.088244e-47
MsG0180004767.01	MsG0380011927.01	0.804152	2.478292e-49	1.268458e-46
MsG0180004861.01	MsG0380011927.01	0.811315	7.443495e-51	4.592442e-48
MsG0180005049.01	MsG0380011927.01	0.810489	1.123811e-50	6.783298e-48
MsG0180005169.01	MsG0380011927.01	0.827910	1.205064e-54	1.179459e-51
MsG0180005268.01	MsG0380011927.01	0.810692	1.015659e-50	6.164140e-48
MsG0180005443.01	MsG0380011927.01	0.813707	2.233579e-51	1.469326e-48
MsG0180005445.01	MsG0380011927.01	0.805130	1.548624e-49	8.128639e-47
MsG0180005451.01	MsG0380011927.01	0.805184	1.509164e-49	7.932320e-47
MsG0180005787.01	MsG0380011927.01	0.820571	6.392461e-53	5.076527e-50
MsG0180006096.01	MsG0380011927.01	0.805399	1.360564e-49	7.190715e-47
MsG0280010776.01	MsG0380011927.01	0.808993	2.356490e-50	1.367198e-47
MsG0280011371.01	MsG0380011927.01	0.817779	2.762672e-52	2.030848e-49
MsG0380011581.01	MsG0380011927.01	0.832544	8.900125e-56	9.979251e-53
MsG0380011614.01	MsG0380011927.01	0.818280	2.128021e-52	1.585923e-49
MsG0380011747.01	MsG0380011927.01	0.837855	4.063493e-57	5.347052e-54
MsG0380011927.01	MsG0380012570.01	0.807609	4.649797e-50	2.601278e-47
MsG0380011927.01	MsG0380013085.01	0.834766	2.478885e-56	2.970436e-53
MsG0380011927.01	MsG0380013579.01	0.802257	6.113704e-49	2.981023e-46
MsG0380011927.01	MsG0380014778.01	0.844131	9.143644e-59	1.462051e-55
MsG0380011927.01	MsG0380015220.01	0.834157	3.525943e-56	4.148724e-53
MsG0380011927.01	MsG0380015435.01	0.805975	1.029592e-49	5.522877e-47
MsG0380011927.01	MsG0380015818.01	0.814428	1.548386e-51	1.038700e-48
MsG0380011927.01	MsG0380016133.01	0.812334	4.468190e-51	2.833179e-48
MsG0380011927.01	MsG0380016290.01	0.834803	2.426688e-56	2.911208e-53
MsG0380011927.01	MsG0380016505.01	0.814840	1.255328e-51	8.514775e-49
MsG0380011927.01	MsG0380016636.01	0.812125	4.962761e-51	3.128848e-48
MsG0380011927.01	MsG0380017433.01	0.811584	6.506617e-51	4.043155e-48
MsG0380011927.01	MsG0380017476.01	0.806193	9.264620e-50	4.997436e-47
MsG0380011927.01	MsG0380018022.01	0.807195	5.692164e-50	3.150448e-47
MsG0380011927.01	MsG0380018033.01	0.831089	2.033618e-55	2.184135e-52
MsG0380011927.01	MsG0480018235.01	0.805429	1.340510e-49	7.090425e-47
MsG0380011927.01	MsG0480018292.01	0.801257	9.808303e-49	4.662758e-46
MsG0380011927.01	MsG0480021041.01	0.814195	1.743283e-51	1.162032e-48
MsG0380011927.01	MsG0480021432.01	0.812052	5.145968e-51	3.237847e-48
MsG0380011927.01	MsG0480021492.01	0.806617	7.541096e-50	4.111704e-47
MsG0380011927.01	MsG0480021706.01	0.807571	4.737237e-50	2.647561e-47
MsG0380011927.01	MsG0480022292.01	0.822114	2.816977e-53	2.336001e-50
MsG0380011927.01	MsG0480022672.01	0.815340	9.720805e-52	6.684122e-49
MsG0380011927.01	MsG0480022960.01	0.805907	1.064250e-49	5.698715e-47
MsG0380011927.01	MsG0480023221.01	0.852902	3.402934e-61	7.220240e-58
MsG0380011927.01	MsG0480023384.01	0.815931	7.177420e-52	5.015663e-49
MsG0380011927.01	MsG0480023387.01	0.848090	7.650512e-60	1.388051e-56
MsG0380011927.01	MsG0580024084.01	0.817413	3.340676e-52	2.431288e-49
MsG0380011927.01	MsG0580024191.01	0.802161	6.398047e-49	3.112061e-46
MsG0380011927.01	MsG0580024536.01	0.814471	1.514807e-51	1.017392e-48
MsG0380011927.01	MsG0580024619.01	0.805551	1.264080e-49	6.706841e-47
MsG0380011927.01	MsG0580024727.01	0.817290	3.560286e-52	2.582232e-49
MsG0380011927.01	MsG0580025268.01	0.840246	9.761548e-58	1.382273e-54
MsG0380011927.01	MsG0580025439.01	0.834359	3.137177e-56	3.714305e-53
MsG0380011927.01	MsG0580025903.01	0.813429	2.571315e-51	1.678763e-48
MsG0380011927.01	MsG0580025986.01	0.807514	4.871022e-50	2.718510e-47
MsG0380011927.01	MsG0580026137.01	0.817364	3.425937e-52	2.489912e-49
MsG0380011927.01	MsG0580026864.01	0.807364	5.240700e-50	2.913325e-47
MsG0380011927.01	MsG0580027891.01	0.800874	1.174539e-48	5.529950e-46
MsG0380011927.01	MsG0580028094.01	0.804468	2.129784e-49	1.098932e-46
MsG0380011927.01	MsG0580028582.01	0.831155	1.959311e-55	2.108345e-52
MsG0380011927.01	MsG0580028597.01	0.808835	2.547774e-50	1.471903e-47
MsG0380011927.01	MsG0580029283.01	0.819019	1.446957e-52	1.100724e-49
MsG0380011927.01	MsG0580029647.01	0.810478	1.130169e-50	6.819657e-48
MsG0380011927.01	MsG0580029658.01	0.809199	2.128923e-50	1.242077e-47
MsG0380011927.01	MsG0580029801.01	0.817728	2.837221e-52	2.082776e-49
MsG0380011927.01	MsG0580029879.01	0.820818	5.609468e-53	4.485618e-50
MsG0380011927.01	MsG0580029919.01	0.805985	1.024553e-49	5.497397e-47
MsG0380011927.01	MsG0580030003.01	0.830828	2.357534e-55	2.512587e-52
MsG0380011927.01	MsG0580030142.01	0.802349	5.850707e-49	2.859620e-46
MsG0380011927.01	MsG0580030204.01	0.807373	5.217196e-50	2.900949e-47
MsG0380011927.01	MsG0680031000.01	0.816301	5.933742e-52	4.189115e-49
MsG0380011927.01	MsG0680031145.01	0.808699	2.724345e-50	1.568290e-47
MsG0380011927.01	MsG0680031301.01	0.824892	6.309598e-54	5.662804e-51
MsG0380011927.01	MsG0680031699.01	0.804563	2.034252e-49	1.052236e-46
MsG0380011927.01	MsG0680031964.01	0.813025	3.153740e-51	2.036519e-48
MsG0380011927.01	MsG0680032075.01	0.804034	2.621450e-49	1.337719e-46
MsG0380011927.01	MsG0680034235.01	0.818151	2.276179e-52	1.690363e-49
MsG0380011927.01	MsG0680034445.01	0.823130	1.634809e-53	1.395506e-50
MsG0380011927.01	MsG0680035577.01	0.811285	7.557401e-51	4.659049e-48
MsG0380011927.01	MsG0680035877.01	0.802324	5.921395e-49	2.892349e-46
MsG0380011927.01	MsG0680035888.01	0.817973	2.497901e-52	1.845882e-49
MsG0380011927.01	MsG0780035937.01	0.826062	3.332985e-54	3.092427e-51
MsG0380011927.01	MsG0780038948.01	0.805616	1.224993e-49	6.510512e-47
MsG0380011927.01	MsG0780039340.01	0.803511	3.366670e-49	1.695075e-46
MsG0380011927.01	MsG0780039828.01	0.824410	8.196356e-54	7.253470e-51
MsG0380011927.01	MsG0780039943.01	0.807808	4.219106e-50	2.372667e-47
MsG0380011927.01	MsG0780040070.01	0.836925	7.030271e-57	8.990288e-54
MsG0380011927.01	MsG0780040110.01	0.839538	1.492741e-57	2.067611e-54
MsG0380011927.01	MsG0780040125.01	0.805317	1.415436e-49	7.465019e-47
MsG0380011927.01	MsG0780040208.01	0.804079	2.565489e-49	1.310683e-46
MsG0380011927.01	MsG0780040424.01	0.813557	2.410082e-51	1.578985e-48
MsG0380011927.01	MsG0780040569.01	0.806192	9.270310e-50	5.000354e-47
MsG0380011927.01	MsG0780040734.01	0.819634	1.047523e-52	8.105113e-50
MsG0380011927.01	MsG0780041127.01	0.829976	3.808099e-55	3.958936e-52
MsG0380011927.01	MsG0780041210.01	0.812206	4.764851e-51	3.010695e-48
MsG0380011927.01	MsG0780041223.01	0.810819	9.535762e-51	5.806927e-48
MsG0380011927.01	MsG0780041258.01	0.825440	4.682743e-54	4.268193e-51
MsG0380011927.01	MsG0780041268.01	0.802413	5.677611e-49	2.779505e-46
MsG0380011927.01	MsG0780041435.01	0.838635	2.558203e-57	3.447317e-54
MsG0380011927.01	MsG0780041482.01	0.815720	8.000757e-52	5.559168e-49
MsG0380011927.01	MsG0880042033.01	0.864707	1.001863e-64	3.175605e-61
MsG0380011927.01	MsG0880042324.01	0.804219	2.399650e-49	1.230278e-46
MsG0380011927.01	MsG0880042760.01	0.815367	9.589338e-52	6.598435e-49
MsG0380011927.01	MsG0880042978.01	0.819824	9.480528e-53	7.374748e-50
MsG0380011927.01	MsG0880042991.01	0.821842	3.256819e-53	2.680108e-50
MsG0380011927.01	MsG0880043162.01	0.833636	4.758149e-56	5.511931e-53
MsG0380011927.01	MsG0880045294.01	0.807989	3.861003e-50	2.181656e-47
MsG0380011927.01	MsG0880045329.01	0.812312	4.516813e-51	2.862184e-48
MsG0380011927.01	MsG0880045656.01	0.844316	8.152813e-59	1.311107e-55
MsG0380011927.01	MsG0880045869.01	0.821037	4.994640e-53	4.018807e-50
MsG0380011927.01	MsG0880046068.01	0.816271	6.027746e-52	4.251851e-49
MsG0380011927.01	MsG0880046074.01	0.804557	2.040448e-49	1.055280e-46
MsG0380011927.01	MsG0880046901.01	0.808240	3.413799e-50	1.941855e-47
MsG0380011927.01	MsG0880047212.01	0.800123	1.670129e-48	7.714760e-46
MsG0380011927.01	MsG0880047743.01	0.821234	4.500636e-53	3.640797e-50
MsG0280006461.01	MsG0380011927.01	0.813513	2.464790e-51	1.612917e-48
MsG0280006545.01	MsG0380011927.01	0.815885	7.348932e-52	5.128949e-49
MsG0280006679.01	MsG0380011927.01	0.839614	1.425756e-57	1.979564e-54
MsG0280006852.01	MsG0380011927.01	0.806919	6.511850e-50	3.578365e-47
MsG0280007109.01	MsG0380011927.01	0.800837	1.194725e-48	5.619729e-46
MsG0280007440.01	MsG0380011927.01	0.820293	7.406023e-53	5.836355e-50
MsG0280007441.01	MsG0380011927.01	0.822143	2.773511e-53	2.301945e-50
MsG0280007527.01	MsG0380011927.01	0.802199	6.282374e-49	3.058613e-46
MsG0280007847.01	MsG0380011927.01	0.837802	4.193232e-57	5.508709e-54
MsG0280008234.01	MsG0380011927.01	0.815729	7.964443e-52	5.535389e-49
MsG0280008758.01	MsG0380011927.01	0.809049	2.292287e-50	1.331970e-47
MsG0280008765.01	MsG0380011927.01	0.803706	3.067566e-49	1.552120e-46
MsG0280009141.01	MsG0380011927.01	0.805246	1.464401e-49	7.709113e-47
MsG0280009554.01	MsG0380011927.01	0.800831	1.198432e-48	5.636163e-46
MsG0280009575.01	MsG0380011927.01	0.850166	2.023591e-60	3.928912e-57
MsG0280010158.01	MsG0380011927.01	0.806722	7.164554e-50	3.917152e-47
MsG0280010184.01	MsG0380011927.01	0.805298	1.428357e-49	7.529560e-47
MsG0280010411.01	MsG0380011927.01	0.814865	1.239202e-51	8.410955e-49
MsG0280010547.01	MsG0380011927.01	0.822071	2.881417e-53	2.386469e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011927.01.T01	MTR_1g048960	96.875	96	3	0	1	96	1	96	4.16e-64	189

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011927.01.T01	AT1G72020	67.010	97	31	1	1	96	1	97	1.18e-43	137

Find 19 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCTCTACTCACTAATT+TGG	0.203441	3:+8069369	None:intergenic
CTTGGACAAGATGAAGTATC+AGG	0.339393	3:-8069266	MsG0380011927.01.T01:CDS
AGTAGAGGATTTCATTCAAC+TGG	0.411924	3:-8069358	MsG0380011927.01.T01:CDS
CAGCAAAAGAAGACAACATC+TGG	0.443589	3:-8069169	MsG0380011927.01.T01:CDS
GTGTTCACAGCTTTCAGCAT+TGG	0.501579	3:-8069223	MsG0380011927.01.T01:CDS
TGCATATCACATGTACAACT+TGG	0.529028	3:-8069284	MsG0380011927.01.T01:CDS
AAGAGGATGGAAGGCGGACA+TGG	0.536915	3:-8069331	MsG0380011927.01.T01:CDS
TTCATTCAACTGGTGTGAAG+AGG	0.561102	3:-8069348	MsG0380011927.01.T01:CDS
ACTCACTAATTTGGAGATGG+AGG	0.570823	3:+8069378	None:intergenic
GCATATACTCTGGCTCGCTA+TGG	0.570951	3:+8069308	None:intergenic
TTCAACTGGTGTGAAGAGGA+TGG	0.571841	3:-8069344	MsG0380011927.01.T01:CDS
TCTACTCACTAATTTGGAGA+TGG	0.576341	3:+8069375	None:intergenic
TGGAAAATGACTGCATACAC+AGG	0.585917	3:+8069190	None:intergenic
ATCTCCAAATTAGTGAGTAG+AGG	0.593200	3:-8069373	MsG0380011927.01.T01:CDS
TTGGACAAGATGAAGTATCA+GGG	0.612137	3:-8069265	MsG0380011927.01.T01:CDS
ACTGGTGTGAAGAGGATGGA+AGG	0.612873	3:-8069340	MsG0380011927.01.T01:CDS
TGATATGCATGCATATACTC+TGG	0.624731	3:+8069298	None:intergenic
ATAACGATGGCATTGAACAA+CGG	0.641834	3:-8069439	None:intergenic
GGTGTGAAGAGGATGGAAGG+CGG	0.703869	3:-8069337	MsG0380011927.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAATCCTCTACTCACTAATT+TGG	+	Chr3:8069232-8069251	None:intergenic	30.0%
	AGTAGAGGATTTCATTCAAC+TGG	-	Chr3:8069240-8069259	MsG0380011927.01.T01:CDS	35.0%
	ATCTCCAAATTAGTGAGTAG+AGG	-	Chr3:8069225-8069244	MsG0380011927.01.T01:CDS	35.0%
	TCTACTCACTAATTTGGAGA+TGG	+	Chr3:8069226-8069245	None:intergenic	35.0%
	TGATATGCATGCATATACTC+TGG	+	Chr3:8069303-8069322	None:intergenic	35.0%
	TGCATATCACATGTACAACT+TGG	-	Chr3:8069314-8069333	MsG0380011927.01.T01:CDS	35.0%
!	TTGGACAAGATGAAGTATCA+GGG	-	Chr3:8069333-8069352	MsG0380011927.01.T01:CDS	35.0%
	ACTCACTAATTTGGAGATGG+AGG	+	Chr3:8069223-8069242	None:intergenic	40.0%
	CAGCAAAAGAAGACAACATC+TGG	-	Chr3:8069429-8069448	MsG0380011927.01.T01:CDS	40.0%
	TGGAAAATGACTGCATACAC+AGG	+	Chr3:8069411-8069430	None:intergenic	40.0%
	TTCATTCAACTGGTGTGAAG+AGG	-	Chr3:8069250-8069269	MsG0380011927.01.T01:CDS	40.0%
!	CAGATGTTGTCTTCTTTTGC+TGG	+	Chr3:8069431-8069450	None:intergenic	40.0%
!	CTTGGACAAGATGAAGTATC+AGG	-	Chr3:8069332-8069351	MsG0380011927.01.T01:CDS	40.0%
	GTGTTCACAGCTTTCAGCAT+TGG	-	Chr3:8069375-8069394	MsG0380011927.01.T01:CDS	45.0%
	TTCAACTGGTGTGAAGAGGA+TGG	-	Chr3:8069254-8069273	MsG0380011927.01.T01:CDS	45.0%
	ACTGGTGTGAAGAGGATGGA+AGG	-	Chr3:8069258-8069277	MsG0380011927.01.T01:CDS	50.0%
!	GCATATACTCTGGCTCGCTA+TGG	+	Chr3:8069293-8069312	None:intergenic	50.0%
	AAGAGGATGGAAGGCGGACA+TGG	-	Chr3:8069267-8069286	MsG0380011927.01.T01:CDS	55.0%
	GGTGTGAAGAGGATGGAAGG+CGG	-	Chr3:8069261-8069280	MsG0380011927.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	8069165	8069455	8069165	ID=MsG0380011927.01;Name=MsG0380011927.01
Chr3	mRNA	8069165	8069455	8069165	ID=MsG0380011927.01.T01;Parent=MsG0380011927.01;Name=MsG0380011927.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|96
Chr3	exon	8069165	8069455	8069165	ID=MsG0380011927.01.T01:exon:3228;Parent=MsG0380011927.01.T01
Chr3	CDS	8069165	8069455	8069165	ID=MsG0380011927.01.T01:cds;Parent=MsG0380011927.01.T01

Gene Sequence	>MsG0380011927.01.T01 ATGGCATTGAACAACGGTCTCAGATCTGCTGCGAAGCTAATTGCTTCTTCAGAATCCTCCATCTCCAAATTAGTGAGTAGAGGATTTCATTCAACTGGTGTGAAGAGGATGGAAGGCGGACATGGCCATAGCGAGCCAGAGTATATGCATGCATATCACATGTACAACTTGGACAAGATGAAGTATCAGGGTTTGAAAATGTCTCTTGCTGTGTTCACAGCTTTCAGCATTGGTGTTGCAGTTCCTGTGTATGCAGTCATTTTCCAGCAAAAGAAGACAACATCTGGCTGA
Protein sequence	>MsG0380011927.01.T01 MALNNGLRSAAKLIASSESSISKLVSRGFHSTGVKRMEGGHGHSEPEYMHAYHMYNLDKMKYQGLKMSLAVFTAFSIGVAVPVYAVIFQQKKTTSG*