AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016214.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016214.01.T01 MTR_3g085710 93.061 245 17 0 174 418 2 246 7.18e-165 470
MsG0380016214.01.T01 MTR_7g022360 46.465 297 103 15 175 428 3 286 2.61e-58 197
MsG0380016214.01.T01 MTR_7g028590 38.023 263 123 10 174 423 2 237 1.20e-34 131
MsG0380016214.01.T01 MTR_7g028590 37.838 259 129 8 174 423 2 237 1.14e-33 130
MsG0380016214.01.T01 MTR_7g028590 41.135 141 61 5 291 423 2 128 2.69e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016214.01.T01 AT5G14090 35.798 257 137 10 174 417 2 243 1.01e-26 109
MsG0380016214.01.T01 AT5G14090 35.798 257 137 10 174 417 2 243 4.23e-26 109

Find 94 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATAAGCAGGTAGCTTTA+TGG 0.231413 3:+80556959 MsG0380016214.01.T01:intron
GAGATGCATGGCAGATTTAT+TGG 0.247230 3:-80558440 None:intergenic
CTTATTCTTTGACACTGATA+TGG 0.261165 3:-80558299 None:intergenic
CCACTTCAGGGATATCTCTT+TGG 0.265174 3:+80558241 MsG0380016214.01.T01:CDS
CATATCAGTGTCAAAGAATA+AGG 0.288207 3:+80558300 MsG0380016214.01.T01:CDS
TTGCATTATCTATCTATTGC+AGG 0.327188 3:+80553711 MsG0380016214.01.T01:CDS
TTCTCTCTGCGGTGCTTACA+TGG 0.339766 3:-80558177 None:intergenic
AGACAGAAAACTGCATAATA+AGG 0.354735 3:+80558533 MsG0380016214.01.T01:CDS
CTTAATTTGCAGCAGTTACT+TGG 0.355697 3:+80557201 MsG0380016214.01.T01:CDS
GCCAAGTTGCACATGAATCT+TGG 0.360241 3:-80558620 None:intergenic
GGATGATACTGACAATAAAA+AGG 0.366676 3:+80558411 MsG0380016214.01.T01:CDS
AAACTCCATTTGTCCACTTC+AGG 0.368249 3:+80558228 MsG0380016214.01.T01:CDS
TTCCTAGCAATTGGAACTCT+TGG 0.378228 3:+80557983 MsG0380016214.01.T01:CDS
ACTTGACGCAAAAGTATATA+TGG 0.387634 3:+80553735 MsG0380016214.01.T01:CDS
AGCAATTGGAACTCTTGGTT+TGG 0.393170 3:+80557988 MsG0380016214.01.T01:CDS
CACTATCTGAAACCGAACTT+TGG 0.396952 3:+80557830 MsG0380016214.01.T01:CDS
GATCAGCTTCAGCTCATTCT+CGG 0.397412 3:-80558089 None:intergenic
AATGCTGGTCCCAACACTAA+TGG 0.397418 3:+80554052 MsG0380016214.01.T01:CDS
TTCCCCGGCTTCCTAGCAAT+TGG 0.406570 3:+80557974 MsG0380016214.01.T01:CDS
GAGAAGCAAACAAGCAGATC+AGG 0.413070 3:+80558369 MsG0380016214.01.T01:CDS
AAGTTGAATCAACAGAGGTC+TGG 0.422480 3:-80558506 None:intergenic
TGGAACTCTTGGTTTGGAAT+CGG 0.430619 3:+80557994 MsG0380016214.01.T01:CDS
ACTATCTGAAACCGAACTTT+GGG 0.435339 3:+80557831 MsG0380016214.01.T01:CDS
ATGCTGGTCCCAACACTAAT+GGG 0.440075 3:+80554053 MsG0380016214.01.T01:CDS
GCAGATCAGGACAATCTTGT+TGG 0.449301 3:+80558382 MsG0380016214.01.T01:CDS
AACTCCATTTGTCCACTTCA+GGG 0.453747 3:+80558229 MsG0380016214.01.T01:CDS
GGAGACTTTGACAAAGGAAA+TGG 0.455746 3:+80553513 MsG0380016214.01.T01:CDS
GCTCACCCAGTGTTGTTCTC+TGG 0.456925 3:-80558339 None:intergenic
AATGATGGTGTTAGTGGTGA+TGG 0.457780 3:-80558019 None:intergenic
GTTCCAATTGCTAGGAAGCC+GGG 0.462497 3:-80557977 None:intergenic
CAAGGAGGAGACTTTGACAA+AGG 0.466944 3:+80553507 MsG0380016214.01.T01:CDS
AGAAAATCTTTCGAAGCAGT+TGG 0.467282 3:+80557899 MsG0380016214.01.T01:CDS
TGAGAATATAATAACTGAAA+AGG 0.468108 3:+80558054 MsG0380016214.01.T01:CDS
AACAACAATGATGATTCATC+TGG 0.470245 3:+80558145 MsG0380016214.01.T01:CDS
TCCAAGATTCATGTGCAACT+TGG 0.471243 3:+80558619 MsG0380016214.01.T01:CDS
GAAAATCTTTCGAAGCAGTT+GGG 0.473047 3:+80557900 MsG0380016214.01.T01:CDS
AGATGAATCATCATTGTTGT+TGG 0.478539 3:-80558143 None:intergenic
ATCTCTTTATAGACATAAGC+AGG 0.480746 3:+80556948 MsG0380016214.01.T01:intron
ATGGAAAATGATGGTGTTAG+TGG 0.481586 3:-80558025 None:intergenic
AACTGACTCCCATTAGTGTT+GGG 0.488895 3:-80554061 None:intergenic
ATCAAGGACTTCATGATTCA+AGG 0.493893 3:+80553489 MsG0380016214.01.T01:CDS
ATATCCCTGAAGTGGACAAA+TGG 0.494244 3:-80558233 None:intergenic
AGGGAACTTGACAAAGGAAA+TGG 0.495780 3:+80553621 MsG0380016214.01.T01:intron
GTGATGATAATCTATATAAG+AGG 0.503718 3:-80557023 None:intergenic
CACCTTCCATCGTGTCATCA+AGG 0.504304 3:+80553473 MsG0380016214.01.T01:CDS
AGTTGAATCAACAGAGGTCT+GGG 0.504381 3:-80558505 None:intergenic
CCAGTGTCTCGTACTGGACC+AGG 0.505381 3:+80554013 MsG0380016214.01.T01:intron
GGAAGAAGATAAGGAGGCAT+GGG 0.511093 3:+80557943 MsG0380016214.01.T01:CDS
ATTTGCAGCAGTTACTTGGA+TGG 0.516221 3:+80557205 MsG0380016214.01.T01:CDS
AGTAGACGAGGAAGAAGATA+AGG 0.519096 3:+80557934 MsG0380016214.01.T01:CDS
AGTTCCAATTGCTAGGAAGC+CGG 0.522924 3:-80557978 None:intergenic
ATAATCTATATAAGAGGAGA+AGG 0.525113 3:-80557017 None:intergenic
AAAGATTATCAATGTGGATG+AGG 0.525746 3:+80553324 MsG0380016214.01.T01:CDS
AGAGGTCTGGGAAGAAGCAT+GGG 0.527489 3:-80558493 None:intergenic
ATATCTCCAGTGTCTCGTAC+TGG 0.527840 3:+80554007 MsG0380016214.01.T01:intron
CAGAGGTCTGGGAAGAAGCA+TGG 0.527966 3:-80558494 None:intergenic
TTTGCCATGCTAACAGCTCC+TGG 0.534982 3:-80554031 None:intergenic
CACTGAACCTTTCAAAGACC+TGG 0.535667 3:+80557254 MsG0380016214.01.T01:CDS
GCTGTTAGCATGGCAAATGC+TGG 0.538859 3:+80554037 MsG0380016214.01.T01:CDS
TATTATATTCTCAACAGAGA+TGG 0.542260 3:-80558044 None:intergenic
GGACAATCTTGTTGGAGCAA+AGG 0.550435 3:+80558390 MsG0380016214.01.T01:CDS
TCTTTCGAAGCAGTTGGGAG+TGG 0.552062 3:+80557905 MsG0380016214.01.T01:CDS
CCAGCGACCAGGTCTTTGAA+AGG 0.556891 3:-80557261 None:intergenic
CCTTTCAAAGACCTGGTCGC+TGG 0.558214 3:+80557261 MsG0380016214.01.T01:CDS
AAACTGACTCCCATTAGTGT+TGG 0.558780 3:-80554062 None:intergenic
AGGAAGAAGATAAGGAGGCA+TGG 0.571385 3:+80557942 MsG0380016214.01.T01:CDS
CCAAAGAGATATCCCTGAAG+TGG 0.575875 3:-80558241 None:intergenic
GAAGATAAGGAGGCATGGGG+TGG 0.581558 3:+80557947 MsG0380016214.01.T01:CDS
TCAACAGAGATGGAAAATGA+TGG 0.585903 3:-80558034 None:intergenic
AAAATAGCTTACCAGCGACC+AGG 0.586209 3:-80557272 None:intergenic
ATAACACTATCAAAGAATGA+AGG 0.592308 3:+80557087 MsG0380016214.01.T01:CDS
CACAGCCAGAGAACAACACT+GGG 0.596125 3:+80558334 MsG0380016214.01.T01:CDS
CTTGATGACACGATGGAAGG+TGG 0.597367 3:-80553472 None:intergenic
ACACAGCCAGAGAACAACAC+TGG 0.600693 3:+80558333 MsG0380016214.01.T01:CDS
TGGACCAGGAGCTGTTAGCA+TGG 0.604837 3:+80554027 MsG0380016214.01.T01:CDS
AGACGAGGAAGAAGATAAGG+AGG 0.605480 3:+80557937 MsG0380016214.01.T01:CDS
GATGGATGCATAGAAAACTT+CGG 0.607420 3:+80557223 MsG0380016214.01.T01:CDS
CTGAAACCGAACTTTGGGAG+CGG 0.608233 3:+80557836 MsG0380016214.01.T01:CDS
GTAGCTTTATGGAATATGAT+CGG 0.608864 3:+80556970 MsG0380016214.01.T01:CDS
GCAGGCAACATCAGTTGATG+AGG 0.617201 3:+80557793 MsG0380016214.01.T01:CDS
AACCAAGAGTTCCAATTGCT+AGG 0.618323 3:-80557985 None:intergenic
TTCCAATTGCTAGGAAGCCG+GGG 0.628342 3:-80557976 None:intergenic
GATGACACGATGGAAGGTGG+AGG 0.641732 3:-80553469 None:intergenic
TATTGCAGGGAACTTGACAA+AGG 0.651993 3:+80553615 MsG0380016214.01.T01:intron
TGTTTCTGATAATTCAACTG+CGG 0.657633 3:-80558266 None:intergenic
GAGTGGTAGAGCAGTAGACG+AGG 0.660218 3:+80557922 MsG0380016214.01.T01:CDS
TCCATGACTATTTCTCTCTG+CGG 0.668096 3:-80558188 None:intergenic
TGCTGAAGTTGAATCAACAG+AGG 0.671518 3:-80558511 None:intergenic
ACCGCAGAGAGAAATAGTCA+TGG 0.693609 3:+80558187 MsG0380016214.01.T01:CDS
GAGGTCTGGGAAGAAGCATG+GGG 0.705384 3:-80558492 None:intergenic
TGAAGTCCTTGATGACACGA+TGG 0.706416 3:-80553479 None:intergenic
GAAGAAGATAAGGAGGCATG+GGG 0.707091 3:+80557944 MsG0380016214.01.T01:CDS
GTCCTTGATGACACGATGGA+AGG 0.709975 3:-80553475 None:intergenic
AAGGACTTCATGATTCAAGG+AGG 0.745105 3:+80553492 MsG0380016214.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATTATCTTCTTAA+TGG - Chr3:80557580-80557599 None:intergenic 10.0%
!! ATTAAAAATCAAAAGAAAAA+AGG - Chr3:80556092-80556111 None:intergenic 10.0%
!! TAGGTAAAAAAAAAAAAAAA+AGG + Chr3:80555295-80555314 MsG0380016214.01.T01:intron 10.0%
!! TTAAAAATCAAAAGAAAAAA+GGG - Chr3:80556091-80556110 None:intergenic 10.0%
!! AAATCATTTATGTTATCTAT+TGG - Chr3:80555433-80555452 None:intergenic 15.0%
!! AAATTTGATTATAGTAAACT+TGG - Chr3:80556176-80556195 None:intergenic 15.0%
!! ACAAATATTATAACTAACAA+AGG - Chr3:80557760-80557779 None:intergenic 15.0%
!! ATAAAATGAAATTTGAATAG+TGG - Chr3:80553818-80553837 None:intergenic 15.0%
!! ATAACTTATACTTACAAAAT+CGG - Chr3:80555067-80555086 None:intergenic 15.0%
!! ATAGATAACATAAATGATTT+AGG + Chr3:80555433-80555452 MsG0380016214.01.T01:intron 15.0%
!! ATCTTAAAATATTTGAAAGA+AGG - Chr3:80554704-80554723 None:intergenic 15.0%
!! ATTTCTACTATTATACAAAT+AGG - Chr3:80554599-80554618 None:intergenic 15.0%
!! TATAATAGTAGAAATATAGT+TGG + Chr3:80554604-80554623 MsG0380016214.01.T01:intron 15.0%
!! TCTTAAAATATTTGAAAGAA+GGG - Chr3:80554703-80554722 None:intergenic 15.0%
!!! ACTAAGCAAAATATATTTTA+TGG - Chr3:80557651-80557670 None:intergenic 15.0%
!!! TGGATTTTTTATAATTTGTT+AGG - Chr3:80556061-80556080 None:intergenic 15.0%
!!! TTTTTTATAATTTGTTAGGA+TGG - Chr3:80556057-80556076 None:intergenic 15.0%
!! AAAAATGTCAACATAACTTT+AGG + Chr3:80555276-80555295 MsG0380016214.01.T01:intron 20.0%
!! ACCATATTAAAGTTTGTATT+GGG - Chr3:80555091-80555110 None:intergenic 20.0%
!! ACTAATTCATTTCTATCAAT+TGG - Chr3:80557607-80557626 None:intergenic 20.0%
!! AGACATGCAAAATAAAATAA+TGG + Chr3:80555348-80555367 MsG0380016214.01.T01:intron 20.0%
!! ATGTTTACCAAAAATCATAA+CGG + Chr3:80556258-80556277 MsG0380016214.01.T01:intron 20.0%
!! ATTTGATGTCAAACATTAAT+CGG - Chr3:80555582-80555601 None:intergenic 20.0%
!! TACCATATTAAAGTTTGTAT+TGG - Chr3:80555092-80555111 None:intergenic 20.0%
!! TATTTAGAAAATGAAAGAAC+TGG + Chr3:80555688-80555707 MsG0380016214.01.T01:intron 20.0%
!! TCATAGTATGAAAATAAAGA+AGG - Chr3:80554559-80554578 None:intergenic 20.0%
!! TGAGAATATAATAACTGAAA+AGG + Chr3:80558054-80558073 MsG0380016214.01.T01:CDS 20.0%
!! TGTTGACATATAATAAACAA+TGG + Chr3:80556903-80556922 MsG0380016214.01.T01:intron 20.0%
!!! AAAGAATTTCCCTTATTTTA+TGG - Chr3:80556680-80556699 None:intergenic 20.0%
!!! AATCGGTATATTTTTTTCTT+TGG - Chr3:80555565-80555584 None:intergenic 20.0%
!!! ATTAATTCATTGTCTACTTT+TGG - Chr3:80557424-80557443 None:intergenic 20.0%
!!! ATTTTATGTTATTTACCGAA+TGG + Chr3:80553831-80553850 MsG0380016214.01.T01:intron 20.0%
! AAAAAAAAAAACAGCAAGCA+AGG - Chr3:80553550-80553569 None:intergenic 25.0%
! AAAAAAAAAACAGCAAGCAA+GGG - Chr3:80553549-80553568 None:intergenic 25.0%
! AAAGAAAAAAGGGTAAAAGT+TGG - Chr3:80556081-80556100 None:intergenic 25.0%
! AATAAAGTTAAGTGACATGT+TGG + Chr3:80555808-80555827 MsG0380016214.01.T01:intron 25.0%
! AATTAATGCCAGATTTAACT+AGG + Chr3:80557437-80557456 MsG0380016214.01.T01:intron 25.0%
! AATTATACACACATCTCTAT+CGG + Chr3:80556629-80556648 MsG0380016214.01.T01:intron 25.0%
! ACATTTAAGAAACAGTCAAA+TGG - Chr3:80554732-80554751 None:intergenic 25.0%
! AGAAAAAGCTCAAGAAAAAA+AGG + Chr3:80558466-80558485 MsG0380016214.01.T01:CDS 25.0%
! AGTTAGATAAACTTGGAATA+TGG + Chr3:80555655-80555674 MsG0380016214.01.T01:intron 25.0%
! ATAACACTATCAAAGAATGA+AGG + Chr3:80557087-80557106 MsG0380016214.01.T01:CDS 25.0%
! ATAATCTATATAAGAGGAGA+AGG - Chr3:80557020-80557039 None:intergenic 25.0%
! ATATCAACCATCAATAGTAA+AGG + Chr3:80555500-80555519 MsG0380016214.01.T01:intron 25.0%
! ATTATTTGATGAATGATGTC+AGG + Chr3:80554895-80554914 MsG0380016214.01.T01:intron 25.0%
! CATTTATGTTATCTATTGGA+CGG - Chr3:80555429-80555448 None:intergenic 25.0%
! CTAAACTAAACATAGTGAAA+GGG - Chr3:80553926-80553945 None:intergenic 25.0%
! GAACAAAAAGATTATCAATG+TGG + Chr3:80553318-80553337 MsG0380016214.01.T01:CDS 25.0%
! GTATTAGAACCTATCAATAA+GGG + Chr3:80555109-80555128 MsG0380016214.01.T01:intron 25.0%
! GTGATGATAATCTATATAAG+AGG - Chr3:80557026-80557045 None:intergenic 25.0%
! GTTAGATAAACTTGGAATAT+GGG + Chr3:80555656-80555675 MsG0380016214.01.T01:intron 25.0%
! TAAACTAAACATAGTGAAAG+GGG - Chr3:80553925-80553944 None:intergenic 25.0%
! TATTATATTCTCAACAGAGA+TGG - Chr3:80558047-80558066 None:intergenic 25.0%
! TCATCATGAGCAAAATTATA+AGG + Chr3:80556789-80556808 MsG0380016214.01.T01:intron 25.0%
! TCTACTATTATACAAATAGG+TGG - Chr3:80554596-80554615 None:intergenic 25.0%
! TGTCTTCAATACTGAAAAAT+TGG + Chr3:80556231-80556250 MsG0380016214.01.T01:intron 25.0%
! TTGGAATACACATGAAAATA+CGG - Chr3:80555481-80555500 None:intergenic 25.0%
!! AAATTTGAATAGTGGAAGAA+AGG - Chr3:80553810-80553829 None:intergenic 25.0%
!! AATTTGAATAGTGGAAGAAA+GGG - Chr3:80553809-80553828 None:intergenic 25.0%
!! AGTTTCAATTGATTGATAAC+TGG + Chr3:80554231-80554250 MsG0380016214.01.T01:intron 25.0%
!! ATTATATCTTTTGATCCAAG+TGG - Chr3:80555211-80555230 None:intergenic 25.0%
!! ATTTGACTGTTTCTTAAATG+TGG + Chr3:80554731-80554750 MsG0380016214.01.T01:intron 25.0%
!! CTTTCACTATGTTTAGTTTA+GGG + Chr3:80553925-80553944 MsG0380016214.01.T01:intron 25.0%
!! TTACTATTGATGGTTGATAT+TGG - Chr3:80555500-80555519 None:intergenic 25.0%
!!! AAGTTAGTTTTTTTGACCAA+AGG + Chr3:80555628-80555647 MsG0380016214.01.T01:intron 25.0%
!!! GCTTTTTTGTATGTTTGTTT+TGG + Chr3:80555710-80555729 MsG0380016214.01.T01:intron 25.0%
!!! GGTATATTTTTTTCTTTGGT+TGG - Chr3:80555561-80555580 None:intergenic 25.0%
AAAAAAAACAGCAAGCAAGA+AGG - Chr3:80553547-80553566 None:intergenic 30.0%
AAAAAAACAGCAAGCAAGAA+GGG - Chr3:80553546-80553565 None:intergenic 30.0%
AAACAAAAATTTGAGAGAGC+AGG - Chr3:80554513-80554532 None:intergenic 30.0%
AAACTAAACATAGTGAAAGG+GGG - Chr3:80553924-80553943 None:intergenic 30.0%
AAAGATTATCAATGTGGATG+AGG + Chr3:80553324-80553343 MsG0380016214.01.T01:CDS 30.0%
AACAAAACATGTCAAGCAAA+TGG - Chr3:80554442-80554461 None:intergenic 30.0%
AACAACAATGATGATTCATC+TGG + Chr3:80558145-80558164 MsG0380016214.01.T01:CDS 30.0%
AACTAAAAGATGCTCAACAT+TGG - Chr3:80554215-80554234 None:intergenic 30.0%
AATAAACAATTTGCAGCTAG+TGG + Chr3:80555976-80555995 MsG0380016214.01.T01:intron 30.0%
AATATTTGTGTTGCGTTTCA+GGG + Chr3:80557771-80557790 MsG0380016214.01.T01:intron 30.0%
ACTTTGACCTTTACTATTGA+TGG - Chr3:80555510-80555529 None:intergenic 30.0%
AGACAGAAAACTGCATAATA+AGG + Chr3:80558533-80558552 MsG0380016214.01.T01:CDS 30.0%
AGACATATATTCCTGGAATA+AGG - Chr3:80553384-80553403 None:intergenic 30.0%
AGATGAATCATCATTGTTGT+TGG - Chr3:80558146-80558165 None:intergenic 30.0%
AGATGTGTGTATAATTCGAT+TGG - Chr3:80556625-80556644 None:intergenic 30.0%
ATAAACAATTTGCAGCTAGT+GGG + Chr3:80555977-80555996 MsG0380016214.01.T01:intron 30.0%
ATAAACTTGTCTGATGACAT+CGG + Chr3:80554297-80554316 MsG0380016214.01.T01:intron 30.0%
ATACACAAGAAGCTGTAAAA+GGG + Chr3:80556417-80556436 MsG0380016214.01.T01:intron 30.0%
ATCTCTTTATAGACATAAGC+AGG + Chr3:80556948-80556967 MsG0380016214.01.T01:intron 30.0%
CATATCAGTGTCAAAGAATA+AGG + Chr3:80558300-80558319 MsG0380016214.01.T01:CDS 30.0%
CCTAAACTAAACATAGTGAA+AGG - Chr3:80553927-80553946 None:intergenic 30.0%
CTTATTCTTTGACACTGATA+TGG - Chr3:80558302-80558321 None:intergenic 30.0%
GAAAAACATGCTTATGTTTC+TGG + Chr3:80556756-80556775 MsG0380016214.01.T01:intron 30.0%
GACATATATTCCTGGAATAA+GGG - Chr3:80553383-80553402 None:intergenic 30.0%
GCCCAATACAAACTTTAATA+TGG + Chr3:80555087-80555106 MsG0380016214.01.T01:intron 30.0%
GGAGCAACAAATATATATGT+TGG - Chr3:80557630-80557649 None:intergenic 30.0%
GGATGATACTGACAATAAAA+AGG + Chr3:80558411-80558430 MsG0380016214.01.T01:CDS 30.0%
GGTATTAGAACCTATCAATA+AGG + Chr3:80555108-80555127 MsG0380016214.01.T01:intron 30.0%
GGTATTTCATTGCATTACTT+AGG + Chr3:80553345-80553364 MsG0380016214.01.T01:intron 30.0%
GGTGCTTGTATATGTATAAA+CGG - Chr3:80555140-80555159 None:intergenic 30.0%
TAATATTTGTGTTGCGTTTC+AGG + Chr3:80557770-80557789 MsG0380016214.01.T01:intron 30.0%
TATTCAAGAATGAGACAACA+TGG + Chr3:80555240-80555259 MsG0380016214.01.T01:intron 30.0%
TCAAAAATCGAGCATCTTAT+AGG - Chr3:80554270-80554289 None:intergenic 30.0%
TGATACTGACAATAAAAAGG+AGG + Chr3:80558414-80558433 MsG0380016214.01.T01:CDS 30.0%
TGCATTATCTATCTATTGCA+GGG + Chr3:80553602-80553621 MsG0380016214.01.T01:intron 30.0%
TTATTTACCGAATGGATGAA+TGG + Chr3:80553839-80553858 MsG0380016214.01.T01:intron 30.0%
TTGCATTATCTATCTATTGC+AGG + Chr3:80553601-80553620 MsG0380016214.01.T01:intron 30.0%
TTTGTGCAATAGATATAGAG+AGG + Chr3:80556322-80556341 MsG0380016214.01.T01:intron 30.0%
! AAAAAACTAACTTGCACTTG+TGG - Chr3:80555621-80555640 None:intergenic 30.0%
! ACTTGACGCAAAAGTATATA+TGG + Chr3:80553735-80553754 MsG0380016214.01.T01:CDS 30.0%
! AGAACTTGCTTCAAGTTTAT+CGG - Chr3:80556204-80556223 None:intergenic 30.0%
! AGTTTTTCTTTGGCATGAAA+CGG - Chr3:80554847-80554866 None:intergenic 30.0%
! ATTTGAATAGTGGAAGAAAG+GGG - Chr3:80553808-80553827 None:intergenic 30.0%
! CATAGAACCGTTATGATTTT+TGG - Chr3:80556268-80556287 None:intergenic 30.0%
! CCTTTCACTATGTTTAGTTT+AGG + Chr3:80553924-80553943 MsG0380016214.01.T01:intron 30.0%
! GAAACATAAGCATGTTTTTC+TGG - Chr3:80556756-80556775 None:intergenic 30.0%
! GTAGGTATAAAACCATTTTG+AGG + Chr3:80555889-80555908 MsG0380016214.01.T01:intron 30.0%
! TATGTATGTTTGATAGCTGT+TGG + Chr3:80557355-80557374 MsG0380016214.01.T01:intron 30.0%
! TGAAGTTCGAAGTTTTTCTT+TGG - Chr3:80554857-80554876 None:intergenic 30.0%
! TGTTTCTGATAATTCAACTG+CGG - Chr3:80558269-80558288 None:intergenic 30.0%
! TTCAGTATTGAAGACAGAAT+CGG - Chr3:80556227-80556246 None:intergenic 30.0%
! TTTTATACCTACAACCATGT+TGG - Chr3:80555881-80555900 None:intergenic 30.0%
!! AATTCATTGTCTACTTTTGG+AGG - Chr3:80557421-80557440 None:intergenic 30.0%
!! GTAGCTTTATGGAATATGAT+CGG + Chr3:80556970-80556989 MsG0380016214.01.T01:CDS 30.0%
!!! AAGTGACATGTTGGTTTTTT+AGG + Chr3:80555817-80555836 MsG0380016214.01.T01:intron 30.0%
!!! AGTGACATGTTGGTTTTTTA+GGG + Chr3:80555818-80555837 MsG0380016214.01.T01:intron 30.0%
!!! ATAAGCATGTTTTTCTGGTT+CGG - Chr3:80556751-80556770 None:intergenic 30.0%
!!! ATATGTCTCAAACTGGTTTT+AGG + Chr3:80553396-80553415 MsG0380016214.01.T01:intron 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + Chr3:80554448-80554467 MsG0380016214.01.T01:intron 30.0%
AAAGAAGGGTTTCTGCAATT+TGG - Chr3:80554689-80554708 None:intergenic 35.0%
AAAGGCAAAGAGAAATCTTG+GGG - Chr3:80556493-80556512 None:intergenic 35.0%
AAGAAGGTAGAGAACTCATT+TGG - Chr3:80554543-80554562 None:intergenic 35.0%
ACACATGAAAATACGGTGTT+GGG - Chr3:80555474-80555493 None:intergenic 35.0%
AGAAAATCTTTCGAAGCAGT+TGG + Chr3:80557899-80557918 MsG0380016214.01.T01:CDS 35.0%
AGATGAAACCTGAACATCAA+CGG - Chr3:80554814-80554833 None:intergenic 35.0%
AGATTTCTCTTTGCCTTTCA+TGG + Chr3:80556495-80556514 MsG0380016214.01.T01:intron 35.0%
AGCAAAATATACGCGAGATA+TGG - Chr3:80556708-80556727 None:intergenic 35.0%
AGGTAACTAAGATCAGTCAA+TGG + Chr3:80557107-80557126 MsG0380016214.01.T01:intron 35.0%
AGGTGCAAGTTAGATAAACT+TGG + Chr3:80555648-80555667 MsG0380016214.01.T01:intron 35.0%
AGTTGGAGTTAGTACCATAT+TGG + Chr3:80554621-80554640 MsG0380016214.01.T01:intron 35.0%
ATCAAGGACTTCATGATTCA+AGG + Chr3:80553489-80553508 MsG0380016214.01.T01:CDS 35.0%
CAGCAAATAATGTACCAACA+TGG + Chr3:80555864-80555883 MsG0380016214.01.T01:intron 35.0%
CAGGAATATATGTCTCAAAC+TGG + Chr3:80553389-80553408 MsG0380016214.01.T01:intron 35.0%
CTAACAAAGGATGTCTATGA+CGG - Chr3:80557747-80557766 None:intergenic 35.0%
CTCTTCAGTAAAATTCAACG+CGG + Chr3:80555916-80555935 MsG0380016214.01.T01:intron 35.0%
GAAAATCTTTCGAAGCAGTT+GGG + Chr3:80557900-80557919 MsG0380016214.01.T01:CDS 35.0%
GAAAGGCAAAGAGAAATCTT+GGG - Chr3:80556494-80556513 None:intergenic 35.0%
GATACACAAGAAGCTGTAAA+AGG + Chr3:80556416-80556435 MsG0380016214.01.T01:intron 35.0%
GATCAGAGACATGTTGTATT+TGG + Chr3:80554335-80554354 MsG0380016214.01.T01:intron 35.0%
GATGGATGCATAGAAAACTT+CGG + Chr3:80557223-80557242 MsG0380016214.01.T01:CDS 35.0%
GCAAAATATACGCGAGATAT+GGG - Chr3:80556707-80556726 None:intergenic 35.0%
GCTATTACTAGTAGGCTATT+TGG + Chr3:80556879-80556898 MsG0380016214.01.T01:intron 35.0%
GGAGATTTCAAATCCTACAT+GGG + Chr3:80554643-80554662 MsG0380016214.01.T01:intron 35.0%
GGATCCAATAAAAGAGAGAA+AGG - Chr3:80555408-80555427 None:intergenic 35.0%
GTATCTTGAAGCAAAGGTAA+AGG - Chr3:80553899-80553918 None:intergenic 35.0%
GTGCATGTGCCATAAAATAA+GGG + Chr3:80556668-80556687 MsG0380016214.01.T01:intron 35.0%
GTTAGGATGGATAACTTTGT+GGG - Chr3:80556044-80556063 None:intergenic 35.0%
GTTGGAGTTAGTACCATATT+GGG + Chr3:80554622-80554641 MsG0380016214.01.T01:intron 35.0%
TAATGTACCAACATGGTTGT+AGG + Chr3:80555871-80555890 MsG0380016214.01.T01:intron 35.0%
TACACAAGAAGCTGTAAAAG+GGG + Chr3:80556418-80556437 MsG0380016214.01.T01:intron 35.0%
TACACATGAAAATACGGTGT+TGG - Chr3:80555475-80555494 None:intergenic 35.0%
TACTGACAATAAAAAGGAGG+AGG + Chr3:80558417-80558436 MsG0380016214.01.T01:CDS 35.0%
TAGACATGCCTAGTTAAATC+TGG - Chr3:80557448-80557467 None:intergenic 35.0%
TATATGCAGTTGAAGCAGTA+AGG - Chr3:80557155-80557174 None:intergenic 35.0%
TCAACAGAGATGGAAAATGA+TGG - Chr3:80558037-80558056 None:intergenic 35.0%
TGAAAAAACCAAGTTCCACT+TGG + Chr3:80555193-80555212 MsG0380016214.01.T01:intron 35.0%
TGAAAGGCAAAGAGAAATCT+TGG - Chr3:80556495-80556514 None:intergenic 35.0%
TGCAAATCCATTCATCCATT+CGG - Chr3:80553849-80553868 None:intergenic 35.0%
TGTGCATGTGCCATAAAATA+AGG + Chr3:80556667-80556686 MsG0380016214.01.T01:intron 35.0%
TGTTAGGATGGATAACTTTG+TGG - Chr3:80556045-80556064 None:intergenic 35.0%
TGTTGTATTTGGCCAAGTAT+TGG + Chr3:80554346-80554365 MsG0380016214.01.T01:intron 35.0%
TTCATTGCATTACTTAGGAG+AGG + Chr3:80553350-80553369 MsG0380016214.01.T01:intron 35.0%
TTCTACTCTACAGTACTACT+AGG + Chr3:80555738-80555757 MsG0380016214.01.T01:intron 35.0%
TTGGGGAAGGATTAAAATGT+CGG - Chr3:80554189-80554208 None:intergenic 35.0%
TTGTGTATCAAACACCTAAC+TGG - Chr3:80556405-80556424 None:intergenic 35.0%
TTTACAGTGGGCAATACTTA+TGG - Chr3:80557541-80557560 None:intergenic 35.0%
! ACTATCTGAAACCGAACTTT+GGG + Chr3:80557831-80557850 MsG0380016214.01.T01:CDS 35.0%
! AGTTTTCATATGCACTGTCA+AGG + Chr3:80554080-80554099 MsG0380016214.01.T01:CDS 35.0%
! ATGGAAAATGATGGTGTTAG+TGG - Chr3:80558028-80558047 None:intergenic 35.0%
! CAGTTTGAGACATATATTCC+TGG - Chr3:80553391-80553410 None:intergenic 35.0%
! GACTGTTTCTTAAATGTGGA+AGG + Chr3:80554735-80554754 MsG0380016214.01.T01:intron 35.0%
! GATTGCTGCTGAATTAGTTT+AGG + Chr3:80553952-80553971 MsG0380016214.01.T01:intron 35.0%
! GCATGTCTTTTTATCTCTTC+AGG - Chr3:80555336-80555355 None:intergenic 35.0%
! GGATTTGAAATCTCCCAATA+TGG - Chr3:80554638-80554657 None:intergenic 35.0%
! GTTTATCTAACTTGCACCTT+TGG - Chr3:80555647-80555666 None:intergenic 35.0%
! TCTAGAATGATCAGAAGTCT+TGG + Chr3:80557670-80557689 MsG0380016214.01.T01:intron 35.0%
! TGTGCCTTTCTCTCTTTTAT+TGG + Chr3:80555401-80555420 MsG0380016214.01.T01:intron 35.0%
! TTTGTGAGCTAGTTTACAGT+GGG - Chr3:80557553-80557572 None:intergenic 35.0%
!! ACTTACAAAATCGGTTTGCA+AGG - Chr3:80555058-80555077 None:intergenic 35.0%
!! CTTAATTTGCAGCAGTTACT+TGG + Chr3:80557201-80557220 MsG0380016214.01.T01:CDS 35.0%
AAACTCCATTTGTCCACTTC+AGG + Chr3:80558228-80558247 MsG0380016214.01.T01:CDS 40.0%
AACCAAGAGTTCCAATTGCT+AGG - Chr3:80557988-80558007 None:intergenic 40.0%
AACTCCATTTGTCCACTTCA+GGG + Chr3:80558229-80558248 MsG0380016214.01.T01:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + Chr3:80553492-80553511 MsG0380016214.01.T01:CDS 40.0%
AAGTTGAATCAACAGAGGTC+TGG - Chr3:80558509-80558528 None:intergenic 40.0%
AATAGGTGGCAAGAGTTTGT+AGG - Chr3:80554582-80554601 None:intergenic 40.0%
ACACAAGAAGCTGTAAAAGG+GGG + Chr3:80556419-80556438 MsG0380016214.01.T01:intron 40.0%
ACACGGTAGCTATTACTAGT+AGG + Chr3:80556871-80556890 MsG0380016214.01.T01:intron 40.0%
ACTAGTAATAGCTACCGTGT+GGG - Chr3:80556871-80556890 None:intergenic 40.0%
AGATGCTCAACATTGGAACT+TGG - Chr3:80554208-80554227 None:intergenic 40.0%
AGATTGTGGTTATCAGTGAC+TGG + Chr3:80554409-80554428 MsG0380016214.01.T01:intron 40.0%
AGCAATTGGAACTCTTGGTT+TGG + Chr3:80557988-80558007 MsG0380016214.01.T01:CDS 40.0%
AGGGAACTTGACAAAGGAAA+TGG + Chr3:80553621-80553640 MsG0380016214.01.T01:intron 40.0%
AGTAGACGAGGAAGAAGATA+AGG + Chr3:80557934-80557953 MsG0380016214.01.T01:CDS 40.0%
AGTTGAATCAACAGAGGTCT+GGG - Chr3:80558508-80558527 None:intergenic 40.0%
ATAATGTGACCATTCTCGTG+AGG + Chr3:80556449-80556468 MsG0380016214.01.T01:intron 40.0%
ATATCCCTGAAGTGGACAAA+TGG - Chr3:80558236-80558255 None:intergenic 40.0%
ATCAAACACCTAACTGGTTG+TGG - Chr3:80556399-80556418 None:intergenic 40.0%
ATGCTCAACATTGGAACTTG+GGG - Chr3:80554206-80554225 None:intergenic 40.0%
ATGGATAACTTTGTGGGTGT+GGG - Chr3:80556038-80556057 None:intergenic 40.0%
ATTTGCAGCAGTTACTTGGA+TGG + Chr3:80557205-80557224 MsG0380016214.01.T01:CDS 40.0%
CAGGGTATAAAGCTCATTTC+TGG + Chr3:80556003-80556022 MsG0380016214.01.T01:intron 40.0%
CTGAAGAAAACTTCCGTTGT+TGG + Chr3:80556559-80556578 MsG0380016214.01.T01:intron 40.0%
CTGAAGAGCTTACCTCAAAA+TGG - Chr3:80555904-80555923 None:intergenic 40.0%
GAGATGCATGGCAGATTTAT+TGG - Chr3:80558443-80558462 None:intergenic 40.0%
GATGCTCAACATTGGAACTT+GGG - Chr3:80554207-80554226 None:intergenic 40.0%
GGAGACTTTGACAAAGGAAA+TGG + Chr3:80553513-80553532 MsG0380016214.01.T01:CDS 40.0%
GGGAGATTTCAAATCCTACA+TGG + Chr3:80554642-80554661 MsG0380016214.01.T01:intron 40.0%
TAATGTGACCATTCTCGTGA+GGG + Chr3:80556450-80556469 MsG0380016214.01.T01:intron 40.0%
TACTAGTAATAGCTACCGTG+TGG - Chr3:80556872-80556891 None:intergenic 40.0%
TATTGCAGGGAACTTGACAA+AGG + Chr3:80553615-80553634 MsG0380016214.01.T01:intron 40.0%
TCCAAGATTCATGTGCAACT+TGG + Chr3:80558619-80558638 MsG0380016214.01.T01:CDS 40.0%
TCTAATAGACCCAAGCTTAG+TGG - Chr3:80554154-80554173 None:intergenic 40.0%
TGCAGCTTGACAAAACAGTA+AGG - Chr3:80556818-80556837 None:intergenic 40.0%
TGCTGAAGTTGAATCAACAG+AGG - Chr3:80558514-80558533 None:intergenic 40.0%
TGTTACATCCACAACCAGTT+AGG + Chr3:80556388-80556407 MsG0380016214.01.T01:intron 40.0%
TTAAGCTGTCTTGTGGTACA+TGG + Chr3:80554920-80554939 MsG0380016214.01.T01:intron 40.0%
TTCCTAGCAATTGGAACTCT+TGG + Chr3:80557983-80558002 MsG0380016214.01.T01:CDS 40.0%
TTTGTCAAGCTGCACATGAT+CGG + Chr3:80556824-80556843 MsG0380016214.01.T01:intron 40.0%
! AAACTGACTCCCATTAGTGT+TGG - Chr3:80554065-80554084 None:intergenic 40.0%
! AACTGACTCCCATTAGTGTT+GGG - Chr3:80554064-80554083 None:intergenic 40.0%
! AATGATGGTGTTAGTGGTGA+TGG - Chr3:80558022-80558041 None:intergenic 40.0%
! CACTATCTGAAACCGAACTT+TGG + Chr3:80557830-80557849 MsG0380016214.01.T01:CDS 40.0%
! CTAGCACTAGTCTGCAAAAT+TGG + Chr3:80554775-80554794 MsG0380016214.01.T01:intron 40.0%
! CTCTTTATTTCTTGCTGCTG+AGG + Chr3:80554474-80554493 MsG0380016214.01.T01:intron 40.0%
! CTGCAATTTGGCTTAACTTG+AGG - Chr3:80554677-80554696 None:intergenic 40.0%
! CTTTTGATCCAAGTGGAACT+TGG - Chr3:80555204-80555223 None:intergenic 40.0%
! GACATAAGCAGGTAGCTTTA+TGG + Chr3:80556959-80556978 MsG0380016214.01.T01:intron 40.0%
! GACTGTGTTCATTGTTGCTT+TGG + Chr3:80553438-80553457 MsG0380016214.01.T01:intron 40.0%
! GTTTGTGAGCTAGTTTACAG+TGG - Chr3:80557554-80557573 None:intergenic 40.0%
! TATTTTCCGCTCCCAAAGTT+CGG - Chr3:80557845-80557864 None:intergenic 40.0%
! TCCATGACTATTTCTCTCTG+CGG - Chr3:80558191-80558210 None:intergenic 40.0%
! TTTATTTCTTGCTGCTGAGG+AGG + Chr3:80554477-80554496 MsG0380016214.01.T01:intron 40.0%
!! GCTTTTTCTCATGAGATGCA+TGG - Chr3:80558455-80558474 None:intergenic 40.0%
!! GTATTTGGCCAAGTATTGGA+AGG + Chr3:80554350-80554369 MsG0380016214.01.T01:intron 40.0%
!! TGGAACTCTTGGTTTGGAAT+CGG + Chr3:80557994-80558013 MsG0380016214.01.T01:CDS 40.0%
!! TGTTAGGTTGATTGAACCAC+AGG + Chr3:80554382-80554401 MsG0380016214.01.T01:intron 40.0%
!! TTCGGTTTCTAGAATCTGAC+CGG - Chr3:80556733-80556752 None:intergenic 40.0%
AAAATAGCTTACCAGCGACC+AGG - Chr3:80557275-80557294 None:intergenic 45.0%
AAGATTGATCAGGACCCACA+CGG + Chr3:80556854-80556873 MsG0380016214.01.T01:intron 45.0%
AATGCTGGTCCCAACACTAA+TGG + Chr3:80554052-80554071 MsG0380016214.01.T01:CDS 45.0%
AATGTGACCATTCTCGTGAG+GGG + Chr3:80556451-80556470 MsG0380016214.01.T01:intron 45.0%
ACCGCAGAGAGAAATAGTCA+TGG + Chr3:80558187-80558206 MsG0380016214.01.T01:CDS 45.0%
ACGCTCAGCACTATTAGGTT+TGG - Chr3:80555161-80555180 None:intergenic 45.0%
ACGGTGATGCCCTTATTGAT+AGG - Chr3:80555121-80555140 None:intergenic 45.0%
AGACGAGGAAGAAGATAAGG+AGG + Chr3:80557937-80557956 MsG0380016214.01.T01:CDS 45.0%
AGGAAGAAGATAAGGAGGCA+TGG + Chr3:80557942-80557961 MsG0380016214.01.T01:CDS 45.0%
AGGCATGAAACCCTTATTCC+AGG + Chr3:80553370-80553389 MsG0380016214.01.T01:intron 45.0%
AGTTCCAATTGCTAGGAAGC+CGG - Chr3:80557981-80558000 None:intergenic 45.0%
ATATCTCCAGTGTCTCGTAC+TGG + Chr3:80554007-80554026 MsG0380016214.01.T01:intron 45.0%
ATCCATTGCCTGAAGATTGC+TGG + Chr3:80556590-80556609 MsG0380016214.01.T01:intron 45.0%
ATGCTGGTCCCAACACTAAT+GGG + Chr3:80554053-80554072 MsG0380016214.01.T01:CDS 45.0%
ATGGACGGTGATATATGCGT+TGG - Chr3:80557522-80557541 None:intergenic 45.0%
CAAAGGATGTCTATGACGGT+TGG - Chr3:80557743-80557762 None:intergenic 45.0%
CAAAGGTAAAGGAGTGAGGT+GGG - Chr3:80553888-80553907 None:intergenic 45.0%
CAAGGAGGAGACTTTGACAA+AGG + Chr3:80553507-80553526 MsG0380016214.01.T01:CDS 45.0%
CACTGAACCTTTCAAAGACC+TGG + Chr3:80557254-80557273 MsG0380016214.01.T01:CDS 45.0%
CAGTGGGCAATACTTATGGA+CGG - Chr3:80557537-80557556 None:intergenic 45.0%
CATATATTACCCGAATCCCC+TGG - Chr3:80555765-80555784 None:intergenic 45.0%
CCAAAGAGATATCCCTGAAG+TGG - Chr3:80558244-80558263 None:intergenic 45.0%
CCACTTCAGGGATATCTCTT+TGG + Chr3:80558241-80558260 MsG0380016214.01.T01:CDS 45.0%
CCATGAACTCAAGTGGCATT+CGG - Chr3:80557716-80557735 None:intergenic 45.0%
CGGATAGGTGAAGATTGATC+AGG + Chr3:80556844-80556863 MsG0380016214.01.T01:intron 45.0%
CTACAGTACTACTAGGTCCA+GGG + Chr3:80555745-80555764 MsG0380016214.01.T01:intron 45.0%
GAAGCAAAGGTAAAGGAGTG+AGG - Chr3:80553892-80553911 None:intergenic 45.0%
GAGAAGCAAACAAGCAGATC+AGG + Chr3:80558369-80558388 MsG0380016214.01.T01:CDS 45.0%
GATCAGCTTCAGCTCATTCT+CGG - Chr3:80558092-80558111 None:intergenic 45.0%
GATGGATAACTTTGTGGGTG+TGG - Chr3:80556039-80556058 None:intergenic 45.0%
GCAGATCAGGACAATCTTGT+TGG + Chr3:80558382-80558401 MsG0380016214.01.T01:CDS 45.0%
GCCAAGTTGCACATGAATCT+TGG - Chr3:80558623-80558642 None:intergenic 45.0%
GGACAATCTTGTTGGAGCAA+AGG + Chr3:80558390-80558409 MsG0380016214.01.T01:CDS 45.0%
TAACCACAATCTGTGTCCTG+TGG - Chr3:80554401-80554420 None:intergenic 45.0%
TACAGTACTACTAGGTCCAG+GGG + Chr3:80555746-80555765 MsG0380016214.01.T01:intron 45.0%
TCAACATTGGAACTTGGGGA+AGG - Chr3:80554202-80554221 None:intergenic 45.0%
TCTACAGTACTACTAGGTCC+AGG + Chr3:80555744-80555763 MsG0380016214.01.T01:intron 45.0%
TCTATCGGTGTGTATCACTG+TGG + Chr3:80556644-80556663 MsG0380016214.01.T01:intron 45.0%
TGAGGATACTCTACCCATGT+AGG - Chr3:80554659-80554678 None:intergenic 45.0%
TGCCCAAATCCACTAAGCTT+GGG + Chr3:80554142-80554161 MsG0380016214.01.T01:intron 45.0%
TGGAAGGCAAGGACATTGTT+AGG + Chr3:80554366-80554385 MsG0380016214.01.T01:intron 45.0%
TGGATAACTTTGTGGGTGTG+GGG - Chr3:80556037-80556056 None:intergenic 45.0%
TGGATATCACACGCCAACAA+CGG - Chr3:80556575-80556594 None:intergenic 45.0%
TGTCCTTGCCTTCCAATACT+TGG - Chr3:80554361-80554380 None:intergenic 45.0%
TTCTCTTTGCCTTTCATGGC+TGG + Chr3:80556499-80556518 MsG0380016214.01.T01:intron 45.0%
TTGGCATGAAACGGAAGAAG+AGG - Chr3:80554838-80554857 None:intergenic 45.0%
! ATGCCACTTGAGTTCATGGT+TGG + Chr3:80557717-80557736 MsG0380016214.01.T01:intron 45.0%
! CTCGCGTATATTTTGCTTCC+CGG + Chr3:80556711-80556730 MsG0380016214.01.T01:intron 45.0%
! GAAGAAGATAAGGAGGCATG+GGG + Chr3:80557944-80557963 MsG0380016214.01.T01:CDS 45.0%
! GGAAGAAGATAAGGAGGCAT+GGG + Chr3:80557943-80557962 MsG0380016214.01.T01:CDS 45.0%
! TGAAGTCCTTGATGACACGA+TGG - Chr3:80553482-80553501 None:intergenic 45.0%
!! AGACCCAAGCTTAGTGGATT+TGG - Chr3:80554148-80554167 None:intergenic 45.0%
!! ATTTGCAGCTAGTGGGTTTC+AGG + Chr3:80555984-80556003 MsG0380016214.01.T01:intron 45.0%
!! GACCCAAGCTTAGTGGATTT+GGG - Chr3:80554147-80554166 None:intergenic 45.0%
!! TCAGGCTTTAAGCTGTCTTG+TGG + Chr3:80554913-80554932 MsG0380016214.01.T01:intron 45.0%
!! TCGGTTTCTAGAATCTGACC+GGG - Chr3:80556732-80556751 None:intergenic 45.0%
!! TTTGCAGCTAGTGGGTTTCA+GGG + Chr3:80555985-80556004 MsG0380016214.01.T01:intron 45.0%
!!! AAAATTTTTTTTTATACTTT+TGG - Chr3:80556141-80556160 None:intergenic 5.0%
ACACAGCCAGAGAACAACAC+TGG + Chr3:80558333-80558352 MsG0380016214.01.T01:CDS 50.0%
ACATGTCTCTGATCCAGCCA+CGG - Chr3:80554329-80554348 None:intergenic 50.0%
ACTACTAGGTCCAGGGGATT+CGG + Chr3:80555752-80555771 MsG0380016214.01.T01:intron 50.0%
ATCAGAAGTCTTGGCGAGTG+AGG + Chr3:80557679-80557698 MsG0380016214.01.T01:intron 50.0%
CAAGCTGCACATGATCGGAT+AGG + Chr3:80556829-80556848 MsG0380016214.01.T01:intron 50.0%
CACAGCCAGAGAACAACACT+GGG + Chr3:80558334-80558353 MsG0380016214.01.T01:CDS 50.0%
CACCTTCCATCGTGTCATCA+AGG + Chr3:80553473-80553492 MsG0380016214.01.T01:CDS 50.0%
CATGTACGACCAGTGACACA+TGG - Chr3:80556527-80556546 None:intergenic 50.0%
CGTGTATGCCAGCAATCTTC+AGG - Chr3:80556601-80556620 None:intergenic 50.0%
CTGCCCAAATCCACTAAGCT+TGG + Chr3:80554141-80554160 MsG0380016214.01.T01:intron 50.0%
GAACCACAGGACACAGATTG+TGG + Chr3:80554395-80554414 MsG0380016214.01.T01:intron 50.0%
GATGACTGCCGTTGATGTTC+AGG + Chr3:80554803-80554822 MsG0380016214.01.T01:intron 50.0%
GCAAAGGTAAAGGAGTGAGG+TGG - Chr3:80553889-80553908 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + Chr3:80554037-80554056 MsG0380016214.01.T01:CDS 50.0%
GGGGCAGTATCTTGAAGCAA+AGG - Chr3:80553905-80553924 None:intergenic 50.0%
GTTCCAATTGCTAGGAAGCC+GGG - Chr3:80557980-80557999 None:intergenic 50.0%
TCAGAAGTCTTGGCGAGTGA+GGG + Chr3:80557680-80557699 MsG0380016214.01.T01:intron 50.0%
TCTTTCGAAGCAGTTGGGAG+TGG + Chr3:80557905-80557924 MsG0380016214.01.T01:CDS 50.0%
TGCCAGCAATCTTCAGGCAA+TGG - Chr3:80556595-80556614 None:intergenic 50.0%
TGGCCAACCATGAACTCAAG+TGG - Chr3:80557723-80557742 None:intergenic 50.0%
TTCCAATTGCTAGGAAGCCG+GGG - Chr3:80557979-80557998 None:intergenic 50.0%
TTCTCTCTGCGGTGCTTACA+TGG - Chr3:80558180-80558199 None:intergenic 50.0%
TTTGCCATGCTAACAGCTCC+TGG - Chr3:80554034-80554053 None:intergenic 50.0%
TTTGTGTTGCGTTTCAGGGC+AGG + Chr3:80557775-80557794 MsG0380016214.01.T01:intron 50.0%
! ACCTAATAGTGCTGAGCGTG+AGG + Chr3:80555162-80555181 MsG0380016214.01.T01:intron 50.0%
! AGAGGTCTGGGAAGAAGCAT+GGG - Chr3:80558496-80558515 None:intergenic 50.0%
! CATGTGTCACTGGTCGTACA+TGG + Chr3:80556525-80556544 MsG0380016214.01.T01:intron 50.0%
! CCGAATGCCACTTGAGTTCA+TGG + Chr3:80557713-80557732 MsG0380016214.01.T01:intron 50.0%
! CCTAATAGTGCTGAGCGTGA+GGG + Chr3:80555163-80555182 MsG0380016214.01.T01:intron 50.0%
! CTGAAACCGAACTTTGGGAG+CGG + Chr3:80557836-80557855 MsG0380016214.01.T01:CDS 50.0%
! CTTGATGACACGATGGAAGG+TGG - Chr3:80553475-80553494 None:intergenic 50.0%
! GCAGGCAACATCAGTTGATG+AGG + Chr3:80557793-80557812 MsG0380016214.01.T01:CDS 50.0%
! GTCCTTGATGACACGATGGA+AGG - Chr3:80553478-80553497 None:intergenic 50.0%
!! TGGCCAAGTATTGGAAGGCA+AGG + Chr3:80554355-80554374 MsG0380016214.01.T01:intron 50.0%
AGCAGATCCCCTCACGAGAA+TGG - Chr3:80556461-80556480 None:intergenic 55.0%
CACATGGCACCAGCCATGAA+AGG - Chr3:80556511-80556530 None:intergenic 55.0%
CAGAGGTCTGGGAAGAAGCA+TGG - Chr3:80558497-80558516 None:intergenic 55.0%
CCAGCGACCAGGTCTTTGAA+AGG - Chr3:80557264-80557283 None:intergenic 55.0%
CCCTCACGCTCAGCACTATT+AGG - Chr3:80555166-80555185 None:intergenic 55.0%
CCTTTCAAAGACCTGGTCGC+TGG + Chr3:80557261-80557280 MsG0380016214.01.T01:CDS 55.0%
CTACTAGGTCCAGGGGATTC+GGG + Chr3:80555753-80555772 MsG0380016214.01.T01:intron 55.0%
GAGTGGTAGAGCAGTAGACG+AGG + Chr3:80557922-80557941 MsG0380016214.01.T01:CDS 55.0%
GATGACACGATGGAAGGTGG+AGG - Chr3:80553472-80553491 None:intergenic 55.0%
TGGACCAGGAGCTGTTAGCA+TGG + Chr3:80554027-80554046 MsG0380016214.01.T01:CDS 55.0%
TTCCCCGGCTTCCTAGCAAT+TGG + Chr3:80557974-80557993 MsG0380016214.01.T01:CDS 55.0%
TTCTCGTGAGGGGATCTGCT+AGG + Chr3:80556461-80556480 MsG0380016214.01.T01:intron 55.0%
! GAAGATAAGGAGGCATGGGG+TGG + Chr3:80557947-80557966 MsG0380016214.01.T01:CDS 55.0%
! GAGGTCTGGGAAGAAGCATG+GGG - Chr3:80558495-80558514 None:intergenic 55.0%
! GCATGGGGTGGTATTTTCCC+CGG + Chr3:80557959-80557978 MsG0380016214.01.T01:CDS 55.0%
! GCTCACCCAGTGTTGTTCTC+TGG - Chr3:80558342-80558361 None:intergenic 55.0%
CCAGTGTCTCGTACTGGACC+AGG + Chr3:80554013-80554032 MsG0380016214.01.T01:intron 60.0%
CCTGGTCCAGTACGAGACAC+TGG - Chr3:80554016-80554035 None:intergenic 60.0%
GATGACATCGGCAGACACCG+TGG + Chr3:80554309-80554328 MsG0380016214.01.T01:intron 60.0%
!! TGGCTGGTGCCATGTGTCAC+TGG + Chr3:80556515-80556534 MsG0380016214.01.T01:intron 60.0%
ACATCGGCAGACACCGTGGC+TGG + Chr3:80554313-80554332 MsG0380016214.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80553313 80558654 80553313 ID=MsG0380016214.01;Name=MsG0380016214.01
Chr3 mRNA 80553313 80558654 80553313 ID=MsG0380016214.01.T01;Parent=MsG0380016214.01;Name=MsG0380016214.01.T01;_AED=0.57;_eAED=0.68;_QI=0|0|0|0.85|0.5|0.57|7|0|483
Chr3 exon 80553313 80553345 80553313 ID=MsG0380016214.01.T01:exon:32810;Parent=MsG0380016214.01.T01
Chr3 exon 80553468 80553537 80553468 ID=MsG0380016214.01.T01:exon:32811;Parent=MsG0380016214.01.T01
Chr3 exon 80553623 80553790 80553623 ID=MsG0380016214.01.T01:exon:32812;Parent=MsG0380016214.01.T01
Chr3 exon 80554017 80554101 80554017 ID=MsG0380016214.01.T01:exon:32813;Parent=MsG0380016214.01.T01
Chr3 exon 80556960 80557108 80556960 ID=MsG0380016214.01.T01:exon:32814;Parent=MsG0380016214.01.T01
Chr3 exon 80557199 80557282 80557199 ID=MsG0380016214.01.T01:exon:32815;Parent=MsG0380016214.01.T01
Chr3 exon 80557792 80558654 80557792 ID=MsG0380016214.01.T01:exon:32816;Parent=MsG0380016214.01.T01
Chr3 CDS 80553313 80553345 80553313 ID=MsG0380016214.01.T01:cds;Parent=MsG0380016214.01.T01
Chr3 CDS 80553468 80553537 80553468 ID=MsG0380016214.01.T01:cds;Parent=MsG0380016214.01.T01
Chr3 CDS 80553623 80553790 80553623 ID=MsG0380016214.01.T01:cds;Parent=MsG0380016214.01.T01
Chr3 CDS 80554017 80554101 80554017 ID=MsG0380016214.01.T01:cds;Parent=MsG0380016214.01.T01
Chr3 CDS 80556960 80557108 80556960 ID=MsG0380016214.01.T01:cds;Parent=MsG0380016214.01.T01
Chr3 CDS 80557199 80557282 80557199 ID=MsG0380016214.01.T01:cds;Parent=MsG0380016214.01.T01
Chr3 CDS 80557792 80558654 80557792 ID=MsG0380016214.01.T01:cds;Parent=MsG0380016214.01.T01
Gene Sequence

>MsG0380016214.01.T01

ATGAAGAACAAAAAGATTATCAATGTGGATGAGTCCTCCACCTTCCATCGTGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGATGGAACTTGACAAAGGAAATGGATGTATGCCCTTGCTTGCTGTTTTTTTTTTTTTTTTTTTTTTTATCTCTTCTCAATCTCAGCTACTTTTGCATTATCTATCTATTGCAGGAACTTGACGCAAAAGTATATATGGTTGTACTTTCAAATATGAGAATTTTAATCGTGATGTCTCGTACTGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACTAATGGGAGTCAGTTTTCATATGCACTGTCAAGACATAAGCAGGTAGCTTTATGGAATATGATCGGTCTTAAGAAATTAATTGAGCTATTCCTTCTCCTCTTATATAGATTATCATCACAACTGTCGAGCGATCAGAAACAAGACTTTGCATGTGTAAACATAACACTATCAAAGAATGAAGTTCTTAATTTGCAGCAGTTACTTGGATGGATGCATAGAAAACTTCGGCAGAATAGCACTGAACCTTTCAAAGACCTGGTCGCTGGGCAGGCAACATCAGTTGATGAGGAACACAACTACTATCACTATCTGAAACCGAACTTTGGGAGCGGAAAATATGTGAAACAAACTCAGAAAGAGCAGTTTAAGCTTAGAAAATCTTTCGAAGCAGTTGGGAGTGGTAGAGCAGTAGACGAGGAAGAAGATAAGGAGGCATGGGGTGGTATTTTCCCCGGCTTCCTAGCAATTGGAACTCTTGGTTTGGAATCGGATCCATCACCACTAACACCATCATTTTCCATCTCTGTTGAGAATATAATAACTGAAAAGGAAGCTGAAGTGACCGAGAATGAGCTGAAGCTGATCAACAATGAGCTAGAGAAAGTTCTCGTGCTAACCAACAACAATGATGATTCATCTGGCAGAAACAGCCATGTAAGCACCGCAGAGAGAAATAGTCATGGACGCATCAGCATAGAATCAAACTCCATTTGTCCACTTCAGGGATATCTCTTTGGATCCGCAGTTGAATTATCAGAAACAAAAACTTCTTCCATATCAGTGTCAAAGAATAAGGAGCAGCAACAACACAGCCAGAGAACAACACTGGGTGAGCTGTTTCAGAGAAGCAAACAAGCAGATCAGGACAATCTTGTTGGAGCAAAGGATGATACTGACAATAAAAAGGAGGAGGCCAATAAATCTGCCATGCATCTCATGAGAAAAAGCTCAAGAAAAAAAGGACGCCCCATGCTTCTTCCCAGACCTCTGTTGATTCAACTTCAGCAGACAGAAAACTGCATAATAAGGTGCTACACACATTTTTTTTACTTTATTTATTTTTATTTTTATATATTATCTGTATGTCTGTTATCCAAGATTCATGTGCAACTTGGCAAGAGAAAATGA

Protein sequence

>MsG0380016214.01.T01

MKNKKIINVDESSTFHRVIKDFMIQGGDFDKGNGWNLTKEMDVCPCLLFFFFFFFLSLLNLSYFCIIYLLQELDAKVYMVVLSNMRILIVMSRTGPGAVSMANAGPNTNGSQFSYALSRHKQVALWNMIGLKKLIELFLLLLYRLSSQLSSDQKQDFACVNITLSKNEVLNLQQLLGWMHRKLRQNSTEPFKDLVAGQATSVDEEHNYYHYLKPNFGSGKYVKQTQKEQFKLRKSFEAVGSGRAVDEEEDKEAWGGIFPGFLAIGTLGLESDPSPLTPSFSISVENIITEKEAEVTENELKLINNELEKVLVLTNNNDDSSGRNSHVSTAERNSHGRISIESNSICPLQGYLFGSAVELSETKTSSISVSKNKEQQQHSQRTTLGELFQRSKQADQDNLVGAKDDTDNKKEEANKSAMHLMRKSSRKKGRPMLLPRPLLIQLQQTENCIIRCYTHFFYFIYFYFYILSVCLLSKIHVQLGKRK*