AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012458.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012458.01.T01 MTR_3g023780 96.304 514 19 0 1 514 1 514 0.0 1036
MsG0380012458.01.T01 MTR_7g078120 38.624 189 103 4 140 326 378 555 2.65e-31 128
MsG0380012458.01.T01 MTR_7g078120 38.624 189 103 4 140 326 378 555 3.40e-31 128
MsG0380012458.01.T01 MTR_1g073380 38.191 199 106 5 132 326 378 563 2.75e-26 113
MsG0380012458.01.T01 MTR_8g098645 39.560 182 97 5 147 326 141 311 1.10e-25 108
MsG0380012458.01.T01 MTR_1g073530 38.462 182 95 5 149 326 385 553 1.31e-25 110
MsG0380012458.01.T01 MTR_1g073590 38.462 182 95 5 149 326 382 550 1.61e-25 110
MsG0380012458.01.T01 MTR_8g098635 35.938 192 108 6 139 326 82 262 2.19e-25 106
MsG0380012458.01.T01 MTR_8g098605 38.462 182 99 5 147 326 391 561 1.25e-24 108
MsG0380012458.01.T01 MTR_8g098635 35.938 192 108 6 139 326 165 345 1.27e-24 105
MsG0380012458.01.T01 MTR_8g028905 35.326 184 102 7 149 326 408 580 1.83e-22 101
MsG0380012458.01.T01 MTR_7g066890 32.778 180 114 5 143 321 188 361 9.27e-19 88.2
MsG0380012458.01.T01 MTR_7g066890 32.778 180 114 5 143 321 290 463 1.83e-18 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012458.01.T01 AT1G13880 36.512 367 207 9 1 366 1 342 1.95e-62 210
MsG0380012458.01.T01 AT1G13880 36.512 367 207 9 1 366 11 352 2.26e-62 210
MsG0380012458.01.T01 AT1G13880 36.240 367 209 9 1 366 1 343 3.31e-62 209
MsG0380012458.01.T01 AT1G26580 43.825 251 129 5 114 352 33 283 1.58e-60 205
MsG0380012458.01.T01 AT1G26580 37.127 369 195 10 1 352 1 349 1.48e-59 204
MsG0380012458.01.T01 AT1G26580 37.127 369 195 10 1 352 1 349 1.48e-59 204
MsG0380012458.01.T01 AT2G03470 35.347 331 178 6 1 328 1 298 8.95e-59 201
MsG0380012458.01.T01 AT2G03470 48.205 195 97 1 134 328 107 297 2.21e-58 200
MsG0380012458.01.T01 AT4G11400 40.314 191 93 6 145 330 370 544 3.10e-29 121
MsG0380012458.01.T01 AT4G11400 40.314 191 93 6 145 330 370 544 3.10e-29 121
MsG0380012458.01.T01 AT5G04110 31.868 182 115 4 146 325 358 532 7.42e-23 102
MsG0380012458.01.T01 AT5G04110 31.868 182 115 4 146 325 358 532 7.42e-23 102
MsG0380012458.01.T01 AT5G04110 31.868 182 115 4 146 325 359 533 7.80e-23 102
MsG0380012458.01.T01 AT2G46040 35.165 182 99 6 151 326 362 530 2.07e-16 82.4
MsG0380012458.01.T01 AT2G46040 35.165 182 99 6 151 326 362 530 2.07e-16 82.4
MsG0380012458.01.T01 AT2G46040 35.165 182 99 6 151 326 376 544 2.41e-16 82.4
MsG0380012458.01.T01 AT5G04110 30.405 148 100 3 146 291 358 504 1.02e-14 77.0

Find 168 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTTATTCCTTAATTTA+TGG 0.141410 3:-16781227 MsG0380012458.01.T01:three_prime_UTR
CGCTGGGACCTGCATGTTTC+GGG 0.207717 3:+16783052 None:intergenic
TGAATCGAATCGAACAAAAT+TGG 0.219915 3:+16784186 None:intergenic
TAGGTATTCCTGCTTCTTCT+TGG 0.231790 3:-16782739 MsG0380012458.01.T01:CDS
ACTGAAGTACTCATGGAAAA+AGG 0.244769 3:+16782661 None:intergenic
CATCCCTCAACAAGAATTTC+TGG 0.247523 3:-16782163 MsG0380012458.01.T01:CDS
ATTGAGAAATTTATTGAATT+GGG 0.262064 3:-16782272 MsG0380012458.01.T01:CDS
CAGATTCAAACCTCAATGTT+TGG 0.268013 3:-16782484 MsG0380012458.01.T01:CDS
CTCATGAGTTAATGTCCTTA+TGG 0.270357 3:+16782604 None:intergenic
CTGAAATATATTGGCCGTTC+TGG 0.274949 3:+16782638 None:intergenic
TATCACTATCAGCACTTAAT+AGG 0.298492 3:+16782036 None:intergenic
TCGCTGGGACCTGCATGTTT+CGG 0.298552 3:+16783051 None:intergenic
CGTCCCAAACATGTTGGTCC+TGG 0.300930 3:+16781739 None:intergenic
GATGAAAATTGTGATGTTAA+TGG 0.303115 3:-16781858 MsG0380012458.01.T01:CDS
TGGAAACTGACCATAAATTA+AGG 0.308686 3:+16781217 None:intergenic
ATGACAATTACATCCGATAA+TGG 0.318193 3:+16781135 None:intergenic
GATTGAGAAATTTATTGAAT+TGG 0.318877 3:-16782273 MsG0380012458.01.T01:CDS
TCCCTAATGAAAATTCTTAC+TGG 0.324672 3:-16781105 None:intergenic
TTTATTGAATTGGGGTTTGC+TGG 0.329459 3:-16782263 MsG0380012458.01.T01:CDS
TTCATTGTAAAATAGTGTTT+TGG 0.344691 3:-16781312 MsG0380012458.01.T01:three_prime_UTR
AGATTCAAACCTCAATGTTT+GGG 0.347603 3:-16782483 MsG0380012458.01.T01:CDS
ACAAGCATCATCTTCATAGA+TGG 0.348871 3:+16781938 None:intergenic
AAGCCCAGGACCAACATGTT+TGG 0.357207 3:-16781743 MsG0380012458.01.T01:CDS
AGGTATTCCTGCTTCTTCTT+GGG 0.363279 3:-16782738 MsG0380012458.01.T01:CDS
TTGTACATTTGACATAAGTT+TGG 0.366773 3:-16781345 MsG0380012458.01.T01:three_prime_UTR
TGAATTGGGGTTTGCTGGCA+TGG 0.372651 3:-16782258 MsG0380012458.01.T01:CDS
AGGAGAATGTTCAAGGAGTA+TGG 0.375340 3:+16782571 None:intergenic
GCTGGGGACTCTCCTGTGAT+AGG 0.378845 3:-16782758 MsG0380012458.01.T01:CDS
AGCCCAGGACCAACATGTTT+GGG 0.382938 3:-16781742 MsG0380012458.01.T01:CDS
CCGCAATGATGATCACTTAG+AGG 0.384163 3:-16781904 MsG0380012458.01.T01:CDS
GAGTGGGAATGGTGATCATT+GGG 0.407252 3:-16781649 MsG0380012458.01.T01:CDS
AAATTCTTGTTGAGGGATGC+TGG 0.410628 3:+16782167 None:intergenic
CACCTGAAGTCTTAGCCAAA+TGG 0.412401 3:+16782980 None:intergenic
GAAAGCGAGCTGAGCAGAAC+AGG 0.412737 3:-16782064 MsG0380012458.01.T01:CDS
CGTTCCGGACTGAAATATAT+TGG 0.413712 3:+16782629 None:intergenic
ATGTGTAAGACAACATATAA+TGG 0.417704 3:-16782327 MsG0380012458.01.T01:CDS
TGGGGCAGTAACTATAATAA+TGG 0.418652 3:-16781630 MsG0380012458.01.T01:CDS
TCATGAGTTAATGTCCTTAT+GGG 0.424228 3:+16782605 None:intergenic
ATCTTCTCGATCCGAGCTAA+AGG 0.426168 3:-16784133 MsG0380012458.01.T01:intron
CCTTCTTGCTAAGGCTAAGA+AGG 0.430502 3:-16781392 MsG0380012458.01.T01:three_prime_UTR
GATGCACCAGGGTGGGATCC+TGG 0.430640 3:-16781564 MsG0380012458.01.T01:CDS
GAATCGAATCGAACAAAATT+GGG 0.431674 3:+16784187 None:intergenic
AATGTCCTTATGGGTCGTTC+CGG 0.437338 3:+16782614 None:intergenic
ATCATCTTCGGTAGTGCAAC+TGG 0.442795 3:+16782712 None:intergenic
TTCTGAACGGTGATCATCTT+CGG 0.442890 3:+16782700 None:intergenic
ACCCATTTGGCTAAGACTTC+AGG 0.445192 3:-16782982 MsG0380012458.01.T01:intron
TCTAGCCTTGATGATGAAGT+TGG 0.445677 3:-16782395 MsG0380012458.01.T01:CDS
ATGGACATCCTAGAGGGGCT+GGG 0.451477 3:-16782775 MsG0380012458.01.T01:CDS
AGAGTGGGAATGGTGATCAT+TGG 0.452381 3:-16781650 MsG0380012458.01.T01:CDS
TGATCAGCTCCAACTGATAC+AGG 0.454985 3:+16782542 None:intergenic
GTCCCAAACATGTTGGTCCT+GGG 0.455653 3:+16781740 None:intergenic
GATGGACATCCTAGAGGGGC+TGG 0.457386 3:-16782776 MsG0380012458.01.T01:CDS
CCCTCATCTGATTCAAGCCC+AGG 0.459996 3:-16781757 MsG0380012458.01.T01:CDS
GTTCCAGAAATTCTTGTTGA+GGG 0.466806 3:+16782160 None:intergenic
CTTGATGATGAAGTTGGAAA+AGG 0.469243 3:-16782389 MsG0380012458.01.T01:CDS
CCTTCTTAGCCTTAGCAAGA+AGG 0.470634 3:+16781392 None:intergenic
AGGCTAGATAATTCCATCTC+AGG 0.474272 3:+16782410 None:intergenic
ACCTGAAGTCTTAGCCAAAT+GGG 0.476227 3:+16782981 None:intergenic
ATCTTGCTCTAAAAGTAAGA+TGG 0.482487 3:-16781535 MsG0380012458.01.T01:CDS
AGCATCTCCTCAGCATCAAA+AGG 0.482810 3:+16783093 None:intergenic
TGATGATTGCGACACCCATT+TGG 0.484841 3:-16782995 MsG0380012458.01.T01:CDS
AAAACGCGGCGGAAGAAGAA+AGG 0.487684 3:+16784319 None:intergenic
AAACGCGGCGGAAGAAGAAA+GGG 0.488317 3:+16784320 None:intergenic
GATTGAATCGATCGGAAGAA+AGG 0.489122 3:+16784244 None:intergenic
TGATAACGGTAGATAATCGC+TGG 0.490642 3:+16783035 None:intergenic
CAGAATCCTCATCTTCCTCA+TGG 0.490672 3:+16781973 None:intergenic
GATGGGAAAGAAACCATTAT+CGG 0.490922 3:-16781148 MsG0380012458.01.T01:three_prime_UTR
GACAACATATAATGGAAGAA+AGG 0.492793 3:-16782319 MsG0380012458.01.T01:CDS
ATCACCATCAATGTTCCTCT+TGG 0.496474 3:+16781821 None:intergenic
GAAATTGAAGGTGAAATTGA+AGG 0.496839 3:+16784271 None:intergenic
CATCCCCATCCCAAACATTG+AGG 0.498295 3:+16782474 None:intergenic
CAAACCTCAATGTTTGGGAT+GGG 0.499908 3:-16782478 MsG0380012458.01.T01:CDS
CTTGATATGCATCACTCTAG+TGG 0.500136 3:-16781783 MsG0380012458.01.T01:CDS
CAGACCAAGAGGAACATTGA+TGG 0.503584 3:-16781825 MsG0380012458.01.T01:CDS
TGGGTGTCGCAATCATCATC+AGG 0.505398 3:+16783000 None:intergenic
CAATAAATTTCTCAATCCCA+AGG 0.506179 3:+16782279 None:intergenic
TCAAGCTGATGTTCCTGCAT+GGG 0.508514 3:-16782519 MsG0380012458.01.T01:CDS
TGGACATCCTAGAGGGGCTG+GGG 0.508901 3:-16782774 MsG0380012458.01.T01:CDS
TTGAGAAATTTATTGAATTG+GGG 0.509311 3:-16782271 MsG0380012458.01.T01:CDS
GAATTGGGGTTTGCTGGCAT+GGG 0.510950 3:-16782257 MsG0380012458.01.T01:CDS
CTCAGGCATAGGCATAATAC+AGG 0.511357 3:+16782427 None:intergenic
AAGAAAGGAGAAGAAATTGA+AGG 0.511358 3:+16784259 None:intergenic
GAAAATAGACAAATAACAGA+TGG 0.520109 3:-16781166 MsG0380012458.01.T01:three_prime_UTR
TCAAACCTCAATGTTTGGGA+TGG 0.524692 3:-16782479 MsG0380012458.01.T01:CDS
TTAGAGCAAGATACAAAGCC+AGG 0.525570 3:+16781546 None:intergenic
ACCATTCCCACTCTTCACCT+TGG 0.525767 3:+16781659 None:intergenic
GAGAGACCAAGGTGAAGAGT+GGG 0.526119 3:-16781665 MsG0380012458.01.T01:CDS
TGATGCTGAGGAGATGCTTG+AGG 0.526167 3:-16783088 MsG0380012458.01.T01:CDS
CCCTCTAGGATGTCCATCAC+AGG 0.527463 3:+16782781 None:intergenic
AGTTAGCATCCTTCTTGCTA+AGG 0.528548 3:-16781401 MsG0380012458.01.T01:three_prime_UTR
AAATTGGGACATAACTCAAA+CGG 0.530236 3:+16781280 None:intergenic
CCTCGCAAGCCTGTATCAGT+TGG 0.530589 3:-16782551 MsG0380012458.01.T01:CDS
GGTCAGTTTCCACATTGGTG+TGG 0.533227 3:-16781206 MsG0380012458.01.T01:three_prime_UTR
CCCATGTCATGTGATGTGTA+TGG 0.535319 3:+16781699 None:intergenic
CAAGCTGATGTTCCTGCATG+GGG 0.538451 3:-16782518 MsG0380012458.01.T01:CDS
CAAGCATCATCTTCATAGAT+GGG 0.539984 3:+16781939 None:intergenic
TGCTTTCTTGCAGGCAACAA+TGG 0.540913 3:-16783127 MsG0380012458.01.T01:intron
AAACCTCAATGTTTGGGATG+GGG 0.542867 3:-16782477 MsG0380012458.01.T01:CDS
GGAGAGTCCCCAGCCCCTCT+AGG 0.543130 3:+16782767 None:intergenic
ACCAAGGTGAAGAGTGGGAA+TGG 0.543330 3:-16781660 MsG0380012458.01.T01:CDS
TATTATGCCTATGCCTGAGA+TGG 0.543940 3:-16782423 MsG0380012458.01.T01:CDS
GAGAACAAGTGGCTCAAAAG+TGG 0.552554 3:-16782235 MsG0380012458.01.T01:CDS
AGAATTTCACGATCTATCAA+AGG 0.553116 3:+16784222 None:intergenic
GCTTGCGAGGAGAATGTTCA+AGG 0.553211 3:+16782564 None:intergenic
TCAGTCCGGAACGACCCATA+AGG 0.556681 3:-16782619 MsG0380012458.01.T01:CDS
AGTTCCAGAAATTCTTGTTG+AGG 0.557435 3:+16782159 None:intergenic
ATCAAGCTGATGTTCCTGCA+TGG 0.557524 3:-16782520 MsG0380012458.01.T01:CDS
GTTCTGGACTGAAGTACTCA+TGG 0.558958 3:+16782654 None:intergenic
AGAGAGACCAAGGTGAAGAG+TGG 0.559975 3:-16781666 MsG0380012458.01.T01:CDS
TTCAAACACCCGAAACATGC+AGG 0.560228 3:-16783060 MsG0380012458.01.T01:CDS
AATAAATTTCTCAATCCCAA+GGG 0.560869 3:+16782280 None:intergenic
GTAAGCAATGGTTACAGCCA+AGG 0.561471 3:-16781606 MsG0380012458.01.T01:CDS
GTTCAAGGAGTATGGAATAG+AGG 0.561760 3:+16782579 None:intergenic
TATAATAATGGAGTAAGCAA+TGG 0.563529 3:-16781618 MsG0380012458.01.T01:CDS
GATAATTCCATCTCAGGCAT+AGG 0.566406 3:+16782416 None:intergenic
TGCTGGCATGGGAGAACAAG+TGG 0.566560 3:-16782246 MsG0380012458.01.T01:CDS
CACTATCAGCACTTAATAGG+TGG 0.573148 3:+16782039 None:intergenic
AATGCTCCATCACATACCCT+TGG 0.581420 3:+16781589 None:intergenic
TCCATACACATCACATGACA+TGG 0.582605 3:-16781700 MsG0380012458.01.T01:CDS
CTTGCTGTTGAAACCTGTGA+TGG 0.582868 3:-16782794 MsG0380012458.01.T01:CDS
TCTTCAATCATGCTACATGT+AGG 0.586716 3:+16781504 None:intergenic
TGCTACCCATGAGGAAGATG+AGG 0.586723 3:-16781979 MsG0380012458.01.T01:CDS
AAAATAGACAAATAACAGAT+GGG 0.588625 3:-16781165 MsG0380012458.01.T01:three_prime_UTR
ACGGCCAATATATTTCAGTC+CGG 0.589146 3:-16782633 MsG0380012458.01.T01:CDS
GAAGCAGGAATACCTATCAC+AGG 0.590260 3:+16782746 None:intergenic
TTTATGGTCAGTTTCCACAT+TGG 0.593146 3:-16781211 MsG0380012458.01.T01:three_prime_UTR
CTTCTTGCTAAGGCTAAGAA+GGG 0.594069 3:-16781391 MsG0380012458.01.T01:three_prime_UTR
ATGGAGCATTGTGATGCACC+AGG 0.595590 3:-16781576 MsG0380012458.01.T01:CDS
CCTGTGATGGACATCCTAGA+GGG 0.599466 3:-16782781 MsG0380012458.01.T01:CDS
AGAATCCTCATCTTCCTCAT+GGG 0.600761 3:+16781974 None:intergenic
CTGATAGTGATAATGATGAA+TGG 0.603537 3:-16782025 MsG0380012458.01.T01:CDS
TCCTGGGCTTGAATCAGATG+AGG 0.606024 3:+16781756 None:intergenic
CCTGGGCTTGAATCAGATGA+GGG 0.606854 3:+16781757 None:intergenic
TAAGCAATGGTTACAGCCAA+GGG 0.614655 3:-16781605 MsG0380012458.01.T01:CDS
TTAGCTCGGATCGAGAAGAT+CGG 0.616739 3:+16784136 None:intergenic
TATCAAAGGATTGAATCGAT+CGG 0.617409 3:+16784236 None:intergenic
GATGTATAGGCTGTTCTGAA+CGG 0.621550 3:+16782687 None:intergenic
GATTGTAGCTGCGAGGACAG+TGG 0.623911 3:-16782359 MsG0380012458.01.T01:CDS
CTGGTGGCCCAAGAAGAAGC+AGG 0.631250 3:+16782731 None:intergenic
CCAACTGATACAGGCTTGCG+AGG 0.632606 3:+16782551 None:intergenic
CGGATCGAGAAGATCGGAGA+CGG 0.634591 3:+16784142 None:intergenic
TTACAGCCAAGGGTATGTGA+TGG 0.636860 3:-16781595 MsG0380012458.01.T01:CDS
CATAAGGACATTAACTCATG+AGG 0.642135 3:-16782603 MsG0380012458.01.T01:CDS
GCATTGTGATGCACCAGGGT+GGG 0.646215 3:-16781571 MsG0380012458.01.T01:CDS
ATCTAAAATCCACACCAATG+TGG 0.648064 3:+16781197 None:intergenic
GATAACGGTAGATAATCGCT+GGG 0.649982 3:+16783036 None:intergenic
ACAAAGCCAGGATCCCACCC+TGG 0.650732 3:+16781558 None:intergenic
ATCTTCGGTAGTGCAACTGG+TGG 0.650760 3:+16782715 None:intergenic
AGTTGCTTCAAGAGAGACCA+AGG 0.656150 3:-16781676 MsG0380012458.01.T01:CDS
ATGAGTACTTCAGTCCAGAA+CGG 0.667987 3:-16782652 MsG0380012458.01.T01:CDS
CCTCTAAGTGATCATCATTG+CGG 0.670801 3:+16781904 None:intergenic
GAATAGTAGATCAGACCAAG+AGG 0.672649 3:-16781836 MsG0380012458.01.T01:CDS
ACCTGTGATGGACATCCTAG+AGG 0.674785 3:-16782782 MsG0380012458.01.T01:CDS
AACGCGGCGGAAGAAGAAAG+GGG 0.679599 3:+16784321 None:intergenic
CTGGGCTTGAATCAGATGAG+GGG 0.684489 3:+16781758 None:intergenic
AGTGGGAATGGTGATCATTG+GGG 0.687140 3:-16781648 MsG0380012458.01.T01:CDS
CCATACACATCACATGACAT+GGG 0.689211 3:-16781699 MsG0380012458.01.T01:CDS
AGATGAACATCTATTTCACA+AGG 0.692555 3:-16782204 MsG0380012458.01.T01:CDS
CAATGAAGTTGCTACCCATG+AGG 0.694283 3:-16781988 MsG0380012458.01.T01:CDS
CTGTGATGGACATCCTAGAG+GGG 0.704316 3:-16782780 MsG0380012458.01.T01:CDS
AGTGATAATGATGAATGGCA+AGG 0.715180 3:-16782020 MsG0380012458.01.T01:CDS
ATAGAGGAAGGATATGCACA+AGG 0.716188 3:-16782839 MsG0380012458.01.T01:intron
AAGAACTGATTGTAGCTGCG+AGG 0.720002 3:-16782366 MsG0380012458.01.T01:CDS
AGCATTGTGATGCACCAGGG+TGG 0.720303 3:-16781572 MsG0380012458.01.T01:CDS
GAGGAAGGATATGCACAAGG+TGG 0.730040 3:-16782836 MsG0380012458.01.T01:CDS
TGGAGCATTGTGATGCACCA+GGG 0.732549 3:-16781575 MsG0380012458.01.T01:CDS
ATCGAGATCTGAAAACGCGG+CGG 0.744415 3:+16784308 None:intergenic
GGAATCGAGATCTGAAAACG+CGG 0.748403 3:+16784305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTCTTTAATTGATTT+GGG - Chr3:16781448-16781467 MsG0380012458.01.T01:exon 10.0%
!!! TGGATTTTATTTTATTTTTA+GGG + Chr3:16781197-16781216 None:intergenic 10.0%
!!! TGTTTTATTGAAATTTATTT+GGG - Chr3:16781664-16781683 MsG0380012458.01.T01:CDS 10.0%
!!! TTGTTTTATTGAAATTTATT+TGG - Chr3:16781663-16781682 MsG0380012458.01.T01:CDS 10.0%
!! ATTGAGAAATTTATTGAATT+GGG - Chr3:16783282-16783301 MsG0380012458.01.T01:intron 15.0%
!! ATTTCTTATTCCTTAATTTA+TGG - Chr3:16784327-16784346 MsG0380012458.01.T01:five_prime_UTR 15.0%
!!! AAAAACCATATTTTTTTTTG+TGG - Chr3:16781831-16781850 MsG0380012458.01.T01:CDS 15.0%
!!! AAAACCATATTTTTTTTTGT+GGG - Chr3:16781832-16781851 MsG0380012458.01.T01:CDS 15.0%
!!! CAATTTTTCTTTAATTGATT+TGG - Chr3:16781447-16781466 MsG0380012458.01.T01:exon 15.0%
!!! GTGGATTTTATTTTATTTTT+AGG + Chr3:16781198-16781217 None:intergenic 15.0%
!!! GTTTTATTGAAATTTATTTG+GGG - Chr3:16781665-16781684 MsG0380012458.01.T01:CDS 15.0%
!!! TTTTATTTTATTTTTAGGGT+TGG + Chr3:16781193-16781212 None:intergenic 15.0%
!!! TTTTTATTATACCTTAAACA+CGG + Chr3:16781773-16781792 None:intergenic 15.0%
!! AAAAAACTATTAAAAACCCT+TGG - Chr3:16783258-16783277 MsG0380012458.01.T01:intron 20.0%
!! AAAAACTATTAAAAACCCTT+GGG - Chr3:16783259-16783278 MsG0380012458.01.T01:intron 20.0%
!! AAAATAGACAAATAACAGAT+GGG - Chr3:16784389-16784408 MsG0380012458.01.T01:five_prime_UTR 20.0%
!! AAATTGAAGGAAAAAGAAAA+GGG + Chr3:16781273-16781292 None:intergenic 20.0%
!! ACTATGTAATATACATTTCA+AGG - Chr3:16782635-16782654 MsG0380012458.01.T01:CDS 20.0%
!! ATTTGAAAAAAATTAGGGTT+AGG - Chr3:16781617-16781636 MsG0380012458.01.T01:CDS 20.0%
!! GATTGAGAAATTTATTGAAT+TGG - Chr3:16783281-16783300 MsG0380012458.01.T01:intron 20.0%
!! TTGAGAAATTTATTGAATTG+GGG - Chr3:16783283-16783302 MsG0380012458.01.T01:intron 20.0%
!! TTTGAAAAAAATTAGGGTTA+GGG - Chr3:16781618-16781637 MsG0380012458.01.T01:CDS 20.0%
!!! AAAACACTATTTTACAATGA+AGG + Chr3:16784243-16784262 None:intergenic 20.0%
!!! CTTTGACTGTTTTATTTTTA+TGG - Chr3:16784120-16784139 MsG0380012458.01.T01:intron 20.0%
!!! GTTCGATTTGAAAAAAATTA+GGG - Chr3:16781612-16781631 MsG0380012458.01.T01:CDS 20.0%
!!! TATTTTCTGGTTAAAAGTTT+TGG - Chr3:16781896-16781915 MsG0380012458.01.T01:CDS 20.0%
!!! TGTTCGATTTGAAAAAAATT+AGG - Chr3:16781611-16781630 MsG0380012458.01.T01:CDS 20.0%
!!! TTCATTGTAAAATAGTGTTT+TGG - Chr3:16784242-16784261 MsG0380012458.01.T01:five_prime_UTR 20.0%
! AAAAATTGAAACCTTTAGCT+CGG + Chr3:16781435-16781454 None:intergenic 25.0%
! AAGACTTGAGAAGAAAAAAT+TGG + Chr3:16784293-16784312 None:intergenic 25.0%
! AATAAATTTCTCAATCCCAA+GGG + Chr3:16783277-16783296 None:intergenic 25.0%
! AGACTTGAGAAGAAAAAATT+GGG + Chr3:16784292-16784311 None:intergenic 25.0%
! AGTACCCACAAAAAAAAATA+TGG + Chr3:16781839-16781858 None:intergenic 25.0%
! ATGTGTAAGACAACATATAA+TGG - Chr3:16783227-16783246 MsG0380012458.01.T01:intron 25.0%
! GAAAATAGACAAATAACAGA+TGG - Chr3:16784388-16784407 MsG0380012458.01.T01:five_prime_UTR 25.0%
! GAAATTGAAGGAAAAAGAAA+AGG + Chr3:16781274-16781293 None:intergenic 25.0%
! GATGAAAATTGTGATGTTAA+TGG - Chr3:16783696-16783715 MsG0380012458.01.T01:intron 25.0%
! TAATTGCAAATTGCTGAATT+TGG + Chr3:16781738-16781757 None:intergenic 25.0%
! TTGTACATTTGACATAAGTT+TGG - Chr3:16784209-16784228 MsG0380012458.01.T01:five_prime_UTR 25.0%
! TTGTATAATTACGATTCTCT+TGG - Chr3:16781702-16781721 MsG0380012458.01.T01:CDS 25.0%
!! TATAATAATGGAGTAAGCAA+TGG - Chr3:16783936-16783955 MsG0380012458.01.T01:intron 25.0%
!!! CGCAAAATATCTTATTTTTG+AGG - Chr3:16782145-16782164 MsG0380012458.01.T01:CDS 25.0%
!!! GATTTTAATCTTGTGCAATT+TGG - Chr3:16782605-16782624 MsG0380012458.01.T01:CDS 25.0%
!!! TTGTAAAATAGTGTTTTGGA+AGG - Chr3:16784246-16784265 MsG0380012458.01.T01:five_prime_UTR 25.0%
AAATTGGGACATAACTCAAA+CGG + Chr3:16784277-16784296 None:intergenic 30.0%
AAGAAAGGAGAAGAAATTGA+AGG + Chr3:16781298-16781317 None:intergenic 30.0%
ACATTGTAATTCATAGAGGA+AGG - Chr3:16782703-16782722 MsG0380012458.01.T01:CDS 30.0%
AGAATTTCACGATCTATCAA+AGG + Chr3:16781335-16781354 None:intergenic 30.0%
AGATGAACATCTATTTCACA+AGG - Chr3:16783350-16783369 MsG0380012458.01.T01:intron 30.0%
AGATTCAAACCTCAATGTTT+GGG - Chr3:16783071-16783090 MsG0380012458.01.T01:CDS 30.0%
ATGACAATTACATCCGATAA+TGG + Chr3:16784422-16784441 None:intergenic 30.0%
CAATAAATTTCTCAATCCCA+AGG + Chr3:16783278-16783297 None:intergenic 30.0%
CATTGTATCATCATCATAGA+AGG + Chr3:16782000-16782019 None:intergenic 30.0%
GAAATTGAAGGTGAAATTGA+AGG + Chr3:16781286-16781305 None:intergenic 30.0%
GAAGTCAGAACATAACATAA+GGG - Chr3:16782069-16782088 MsG0380012458.01.T01:CDS 30.0%
GAATCGAATCGAACAAAATT+GGG + Chr3:16781370-16781389 None:intergenic 30.0%
GGAAAAACAGATTCTGATAA+CGG + Chr3:16782536-16782555 None:intergenic 30.0%
GTCTACATTGTAATTCATAG+AGG - Chr3:16782699-16782718 MsG0380012458.01.T01:CDS 30.0%
TATCAAAGGATTGAATCGAT+CGG + Chr3:16781321-16781340 None:intergenic 30.0%
TATCACTATCAGCACTTAAT+AGG + Chr3:16783521-16783540 None:intergenic 30.0%
TCATGAGTTAATGTCCTTAT+GGG + Chr3:16782952-16782971 None:intergenic 30.0%
TGAAGTCAGAACATAACATA+AGG - Chr3:16782068-16782087 MsG0380012458.01.T01:CDS 30.0%
TGAATCGAATCGAACAAAAT+TGG + Chr3:16781371-16781390 None:intergenic 30.0%
TGAGGAAAAATAAACGTGTT+TGG + Chr3:16781150-16781169 None:intergenic 30.0%
TGGAAACTGACCATAAATTA+AGG + Chr3:16784340-16784359 None:intergenic 30.0%
TTTATTGAATGCTTTCTTGC+AGG - Chr3:16782418-16782437 MsG0380012458.01.T01:CDS 30.0%
! AGCATGATTGAAGAAGTTTT+TGG - Chr3:16784059-16784078 MsG0380012458.01.T01:intron 30.0%
! ATTCACGTTTTCGGTTTTTA+GGG - Chr3:16781386-16781405 MsG0380012458.01.T01:three_prime_UTR 30.0%
! CTGATAGTGATAATGATGAA+TGG - Chr3:16783529-16783548 MsG0380012458.01.T01:intron 30.0%
! GACAACATATAATGGAAGAA+AGG - Chr3:16783235-16783254 MsG0380012458.01.T01:intron 30.0%
! TCTTCGTTCGAATTTTTGTT+TGG - Chr3:16781542-16781561 MsG0380012458.01.T01:CDS 30.0%
! TTTTTCTTCTCAAGTCTTTC+TGG - Chr3:16784295-16784314 MsG0380012458.01.T01:five_prime_UTR 30.0%
!! ATCTTGCTCTAAAAGTAAGA+TGG - Chr3:16784019-16784038 MsG0380012458.01.T01:intron 30.0%
!! ATTGAAGAAGTTTTTGGAGA+TGG - Chr3:16784065-16784084 MsG0380012458.01.T01:intron 30.0%
!!! CGATTTGTTGTTTTCGATTT+GGG - Chr3:16781490-16781509 MsG0380012458.01.T01:CDS 30.0%
!!! GATTTGTTGTTTTCGATTTG+GGG - Chr3:16781491-16781510 MsG0380012458.01.T01:CDS 30.0%
!!! TAAAAGTTTTGGAAGTGATG+TGG - Chr3:16781907-16781926 MsG0380012458.01.T01:CDS 30.0%
!!! TCGATTTGTTGTTTTCGATT+TGG - Chr3:16781489-16781508 MsG0380012458.01.T01:CDS 30.0%
AACGGAAAACACTATGAATG+AGG + Chr3:16782324-16782343 None:intergenic 35.0%
AAGAAGAAAGGGGAAAAACT+AGG + Chr3:16781226-16781245 None:intergenic 35.0%
AAGCTGAAAAAAGATCGATG+GGG - Chr3:16783103-16783122 MsG0380012458.01.T01:CDS 35.0%
ACAAGCATCATCTTCATAGA+TGG + Chr3:16783619-16783638 None:intergenic 35.0%
AGAAGAAAGGGGAAAAACTA+GGG + Chr3:16781225-16781244 None:intergenic 35.0%
AGTTCCAGAAATTCTTGTTG+AGG + Chr3:16783398-16783417 None:intergenic 35.0%
ATCATCATCATAGAAGGAGT+GGG + Chr3:16781994-16782013 None:intergenic 35.0%
CAAGCATCATCTTCATAGAT+GGG + Chr3:16783618-16783637 None:intergenic 35.0%
CAGATTCAAACCTCAATGTT+TGG - Chr3:16783070-16783089 MsG0380012458.01.T01:CDS 35.0%
CATAAGGACATTAACTCATG+AGG - Chr3:16782951-16782970 MsG0380012458.01.T01:intron 35.0%
CTCATGAGTTAATGTCCTTA+TGG + Chr3:16782953-16782972 None:intergenic 35.0%
GAAGCTGAAAAAAGATCGAT+GGG - Chr3:16783102-16783121 MsG0380012458.01.T01:CDS 35.0%
GATGGGAAAGAAACCATTAT+CGG - Chr3:16784406-16784425 MsG0380012458.01.T01:five_prime_UTR 35.0%
GTTCCAGAAATTCTTGTTGA+GGG + Chr3:16783397-16783416 None:intergenic 35.0%
TATCATCATCATAGAAGGAG+TGG + Chr3:16781995-16782014 None:intergenic 35.0%
TCTTCAATCATGCTACATGT+AGG + Chr3:16784053-16784072 None:intergenic 35.0%
TGAAGCTGAAAAAAGATCGA+TGG - Chr3:16783101-16783120 MsG0380012458.01.T01:CDS 35.0%
TGGAAAAAGGGAAGATGTAT+AGG + Chr3:16782883-16782902 None:intergenic 35.0%
TGGGGCAGTAACTATAATAA+TGG - Chr3:16783924-16783943 MsG0380012458.01.T01:intron 35.0%
TTTATGGTCAGTTTCCACAT+TGG - Chr3:16784343-16784362 MsG0380012458.01.T01:five_prime_UTR 35.0%
TTTATTGAATTGGGGTTTGC+TGG - Chr3:16783291-16783310 MsG0380012458.01.T01:intron 35.0%
! ACTGAAGTACTCATGGAAAA+AGG + Chr3:16782896-16782915 None:intergenic 35.0%
! AGTGATAATGATGAATGGCA+AGG - Chr3:16783534-16783553 MsG0380012458.01.T01:intron 35.0%
! ATCTAAAATCCACACCAATG+TGG + Chr3:16784360-16784379 None:intergenic 35.0%
! CTGAAGTACTCATGGAAAAA+GGG + Chr3:16782895-16782914 None:intergenic 35.0%
! CTTTTCCAACTTCATCATCA+AGG + Chr3:16783167-16783186 None:intergenic 35.0%
! GATTCACGTTTTCGGTTTTT+AGG - Chr3:16781385-16781404 MsG0380012458.01.T01:three_prime_UTR 35.0%
! GGTGTGGATTTTAGATTAGA+GGG - Chr3:16784364-16784383 MsG0380012458.01.T01:five_prime_UTR 35.0%
! TGGTGTGGATTTTAGATTAG+AGG - Chr3:16784363-16784382 MsG0380012458.01.T01:five_prime_UTR 35.0%
! TTTTCCTTCACGAAGCAAAA+AGG - Chr3:16783431-16783450 MsG0380012458.01.T01:intron 35.0%
!! ATTTTCCACGGGTTTGATTT+TGG - Chr3:16781516-16781535 MsG0380012458.01.T01:CDS 35.0%
!! CTTGATGATGAAGTTGGAAA+AGG - Chr3:16783165-16783184 MsG0380012458.01.T01:intron 35.0%
!! TTCGATTCGATTCACGTTTT+CGG - Chr3:16781377-16781396 MsG0380012458.01.T01:three_prime_UTR 35.0%
!! TTTTCCACGGGTTTGATTTT+GGG - Chr3:16781517-16781536 MsG0380012458.01.T01:CDS 35.0%
AAAGGGGAAAAACTAGGGTT+AGG + Chr3:16781220-16781239 None:intergenic 40.0%
AAATTCTTGTTGAGGGATGC+TGG + Chr3:16783390-16783409 None:intergenic 40.0%
ACAAGAAAAGCCCCAAATTC+AGG + Chr3:16781647-16781666 None:intergenic 40.0%
ACCTGAAGTCTTAGCCAAAT+GGG + Chr3:16782576-16782595 None:intergenic 40.0%
ACGGCCAATATATTTCAGTC+CGG - Chr3:16782921-16782940 MsG0380012458.01.T01:intron 40.0%
AGAATCCTCATCTTCCTCAT+GGG + Chr3:16783583-16783602 None:intergenic 40.0%
AGGAGAATGTTCAAGGAGTA+TGG + Chr3:16782986-16783005 None:intergenic 40.0%
AGGCTAGATAATTCCATCTC+AGG + Chr3:16783147-16783166 None:intergenic 40.0%
AGGTATTCCTGCTTCTTCTT+GGG - Chr3:16782816-16782835 MsG0380012458.01.T01:CDS 40.0%
AGTTAGCATCCTTCTTGCTA+AGG - Chr3:16784153-16784172 MsG0380012458.01.T01:five_prime_UTR 40.0%
ATAGAGGAAGGATATGCACA+AGG - Chr3:16782715-16782734 MsG0380012458.01.T01:CDS 40.0%
ATCACCATCAATGTTCCTCT+TGG + Chr3:16783736-16783755 None:intergenic 40.0%
ATGAGTACTTCAGTCCAGAA+CGG - Chr3:16782902-16782921 MsG0380012458.01.T01:intron 40.0%
ATTTGGCTAAGACTTCAGGT+GGG - Chr3:16782576-16782595 MsG0380012458.01.T01:CDS 40.0%
CACTATCAGCACTTAATAGG+TGG + Chr3:16783518-16783537 None:intergenic 40.0%
CATCCCTCAACAAGAATTTC+TGG - Chr3:16783391-16783410 MsG0380012458.01.T01:intron 40.0%
CCATACACATCACATGACAT+GGG - Chr3:16783855-16783874 MsG0380012458.01.T01:intron 40.0%
CCTCTAAGTGATCATCATTG+CGG + Chr3:16783653-16783672 None:intergenic 40.0%
CGTTCCGGACTGAAATATAT+TGG + Chr3:16782928-16782947 None:intergenic 40.0%
CTGAAATATATTGGCCGTTC+TGG + Chr3:16782919-16782938 None:intergenic 40.0%
CTTCTTGCTAAGGCTAAGAA+GGG - Chr3:16784163-16784182 MsG0380012458.01.T01:five_prime_UTR 40.0%
CTTGATATGCATCACTCTAG+TGG - Chr3:16783771-16783790 MsG0380012458.01.T01:intron 40.0%
GAATAGTAGATCAGACCAAG+AGG - Chr3:16783718-16783737 MsG0380012458.01.T01:intron 40.0%
GATAATTCCATCTCAGGCAT+AGG + Chr3:16783141-16783160 None:intergenic 40.0%
GATTGAATCGATCGGAAGAA+AGG + Chr3:16781313-16781332 None:intergenic 40.0%
GCTTCGTGAAGGAAAAACAA+TGG + Chr3:16783427-16783446 None:intergenic 40.0%
GGTTAGGGTTTCCTGAATTT+GGG - Chr3:16781633-16781652 MsG0380012458.01.T01:CDS 40.0%
GTTAGGGTTTCCTGAATTTG+GGG - Chr3:16781634-16781653 MsG0380012458.01.T01:CDS 40.0%
TAAGCAATGGTTACAGCCAA+GGG - Chr3:16783949-16783968 MsG0380012458.01.T01:intron 40.0%
TAGGTATTCCTGCTTCTTCT+TGG - Chr3:16782815-16782834 MsG0380012458.01.T01:CDS 40.0%
TATTATGCCTATGCCTGAGA+TGG - Chr3:16783131-16783150 MsG0380012458.01.T01:intron 40.0%
TCAAACCTCAATGTTTGGGA+TGG - Chr3:16783075-16783094 MsG0380012458.01.T01:CDS 40.0%
TCCATACACATCACATGACA+TGG - Chr3:16783854-16783873 MsG0380012458.01.T01:intron 40.0%
TGCATGTCCTTTCATTGAGT+AGG - Chr3:16781968-16781987 MsG0380012458.01.T01:CDS 40.0%
TTAGAGCAAGATACAAAGCC+AGG + Chr3:16784011-16784030 None:intergenic 40.0%
TTCTGAACGGTGATCATCTT+CGG + Chr3:16782857-16782876 None:intergenic 40.0%
TTTGACAGAGACCGTGTTTA+AGG - Chr3:16781759-16781778 MsG0380012458.01.T01:CDS 40.0%
! AAACCTCAATGTTTGGGATG+GGG - Chr3:16783077-16783096 MsG0380012458.01.T01:CDS 40.0%
! ATCTCCTTTTTGCTTCGTGA+AGG + Chr3:16783438-16783457 None:intergenic 40.0%
! CAAACCTCAATGTTTGGGAT+GGG - Chr3:16783076-16783095 MsG0380012458.01.T01:CDS 40.0%
! GATAACGGTAGATAATCGCT+GGG + Chr3:16782521-16782540 None:intergenic 40.0%
! GATGTATAGGCTGTTCTGAA+CGG + Chr3:16782870-16782889 None:intergenic 40.0%
! GATTTGGGGAAATTTTCCAC+GGG - Chr3:16781505-16781524 MsG0380012458.01.T01:CDS 40.0%
! GTTCAAGGAGTATGGAATAG+AGG + Chr3:16782978-16782997 None:intergenic 40.0%
!! AAGTTTTTGGAGATGGACGA+AGG - Chr3:16784072-16784091 MsG0380012458.01.T01:intron 40.0%
!! CGATTTGGGGAAATTTTCCA+CGG - Chr3:16781504-16781523 MsG0380012458.01.T01:CDS 40.0%
!! CTTTTTCGTCCCAAACATGT+TGG + Chr3:16783824-16783843 None:intergenic 40.0%
!! TCTAGCCTTGATGATGAAGT+TGG - Chr3:16783159-16783178 MsG0380012458.01.T01:intron 40.0%
!! TGATAACGGTAGATAATCGC+TGG + Chr3:16782522-16782541 None:intergenic 40.0%
!! TGATAGCTCATCGACTTCAA+CGG + Chr3:16782342-16782361 None:intergenic 40.0%
AAGAACTGATTGTAGCTGCG+AGG - Chr3:16783188-16783207 MsG0380012458.01.T01:intron 45.0%
AATGCTCCATCACATACCCT+TGG + Chr3:16783968-16783987 None:intergenic 45.0%
AATGTCCTTATGGGTCGTTC+CGG + Chr3:16782943-16782962 None:intergenic 45.0%
ACCCATTTGGCTAAGACTTC+AGG - Chr3:16782572-16782591 MsG0380012458.01.T01:CDS 45.0%
AGAGTGGGAATGGTGATCAT+TGG - Chr3:16783904-16783923 MsG0380012458.01.T01:intron 45.0%
AGCATCTCCTCAGCATCAAA+AGG + Chr3:16782464-16782483 None:intergenic 45.0%
AGTGGGAATGGTGATCATTG+GGG - Chr3:16783906-16783925 MsG0380012458.01.T01:intron 45.0%
AGTTGCTTCAAGAGAGACCA+AGG - Chr3:16783878-16783897 MsG0380012458.01.T01:intron 45.0%
ATCAAGCTGATGTTCCTGCA+TGG - Chr3:16783034-16783053 MsG0380012458.01.T01:CDS 45.0%
ATCATCTTCGGTAGTGCAAC+TGG + Chr3:16782845-16782864 None:intergenic 45.0%
ATCTTCTCGATCCGAGCTAA+AGG - Chr3:16781421-16781440 MsG0380012458.01.T01:three_prime_UTR 45.0%
CAATGAAGTTGCTACCCATG+AGG - Chr3:16783566-16783585 MsG0380012458.01.T01:intron 45.0%
CACCTGAAGTCTTAGCCAAA+TGG + Chr3:16782577-16782596 None:intergenic 45.0%
CAGAATCCTCATCTTCCTCA+TGG + Chr3:16783584-16783603 None:intergenic 45.0%
CAGACCAAGAGGAACATTGA+TGG - Chr3:16783729-16783748 MsG0380012458.01.T01:intron 45.0%
CATTTGGCTAAGACTTCAGG+TGG - Chr3:16782575-16782594 MsG0380012458.01.T01:CDS 45.0%
CCCATGTCATGTGATGTGTA+TGG + Chr3:16783858-16783877 None:intergenic 45.0%
CCGCAATGATGATCACTTAG+AGG - Chr3:16783650-16783669 MsG0380012458.01.T01:intron 45.0%
CCTTCTTGCTAAGGCTAAGA+AGG - Chr3:16784162-16784181 MsG0380012458.01.T01:five_prime_UTR 45.0%
CTCAGGCATAGGCATAATAC+AGG + Chr3:16783130-16783149 None:intergenic 45.0%
GAAGCAGGAATACCTATCAC+AGG + Chr3:16782811-16782830 None:intergenic 45.0%
GAATCCCAAAATCAAACCCG+TGG + Chr3:16781524-16781543 None:intergenic 45.0%
GAGAACAAGTGGCTCAAAAG+TGG - Chr3:16783319-16783338 MsG0380012458.01.T01:intron 45.0%
GAGTGGGAATGGTGATCATT+GGG - Chr3:16783905-16783924 MsG0380012458.01.T01:intron 45.0%
GGAATCGAGATCTGAAAACG+CGG + Chr3:16781252-16781271 None:intergenic 45.0%
GGGTTAGGGTTTCCTGAATT+TGG - Chr3:16781632-16781651 MsG0380012458.01.T01:CDS 45.0%
GTAAGCAATGGTTACAGCCA+AGG - Chr3:16783948-16783967 MsG0380012458.01.T01:intron 45.0%
TCAAGCTGATGTTCCTGCAT+GGG - Chr3:16783035-16783054 MsG0380012458.01.T01:CDS 45.0%
TGATCAGCTCCAACTGATAC+AGG + Chr3:16783015-16783034 None:intergenic 45.0%
TGATGATTGCGACACCCATT+TGG - Chr3:16782559-16782578 MsG0380012458.01.T01:CDS 45.0%
TGCTTTCTTGCAGGCAACAA+TGG - Chr3:16782427-16782446 MsG0380012458.01.T01:CDS 45.0%
TTAGCTCGGATCGAGAAGAT+CGG + Chr3:16781421-16781440 None:intergenic 45.0%
TTCAAACACCCGAAACATGC+AGG - Chr3:16782494-16782513 MsG0380012458.01.T01:CDS 45.0%
! AGAGAAACGACAGCGTTTTG+AGG + Chr3:16781168-16781187 None:intergenic 45.0%
! GAAACGTCCTTTTGATGCTG+AGG - Chr3:16782454-16782473 MsG0380012458.01.T01:CDS 45.0%
! GTTCTGGACTGAAGTACTCA+TGG + Chr3:16782903-16782922 None:intergenic 45.0%
! TTACAGCCAAGGGTATGTGA+TGG - Chr3:16783959-16783978 MsG0380012458.01.T01:intron 45.0%
!! CCTTCTTAGCCTTAGCAAGA+AGG + Chr3:16784165-16784184 None:intergenic 45.0%
!! CTTGCTGTTGAAACCTGTGA+TGG - Chr3:16782760-16782779 MsG0380012458.01.T01:CDS 45.0%
!!! TTTTTTTTAAATTTATTTTC+TGG - Chr3:16781883-16781902 MsG0380012458.01.T01:CDS 5.0%
AAAACGCGGCGGAAGAAGAA+AGG + Chr3:16781238-16781257 None:intergenic 50.0%
AAACGCGGCGGAAGAAGAAA+GGG + Chr3:16781237-16781256 None:intergenic 50.0%
AAGCCCAGGACCAACATGTT+TGG - Chr3:16783811-16783830 MsG0380012458.01.T01:intron 50.0%
ACCAAGGTGAAGAGTGGGAA+TGG - Chr3:16783894-16783913 MsG0380012458.01.T01:intron 50.0%
ACCATTCCCACTCTTCACCT+TGG + Chr3:16783898-16783917 None:intergenic 50.0%
AGAGAGACCAAGGTGAAGAG+TGG - Chr3:16783888-16783907 MsG0380012458.01.T01:intron 50.0%
AGCCCAGGACCAACATGTTT+GGG - Chr3:16783812-16783831 MsG0380012458.01.T01:intron 50.0%
ATCGAGATCTGAAAACGCGG+CGG + Chr3:16781249-16781268 None:intergenic 50.0%
ATCTTCGGTAGTGCAACTGG+TGG + Chr3:16782842-16782861 None:intergenic 50.0%
CAAGCTGATGTTCCTGCATG+GGG - Chr3:16783036-16783055 MsG0380012458.01.T01:CDS 50.0%
CATCCCCATCCCAAACATTG+AGG + Chr3:16783083-16783102 None:intergenic 50.0%
CCTGGGCTTGAATCAGATGA+GGG + Chr3:16783800-16783819 None:intergenic 50.0%
CTGGGCTTGAATCAGATGAG+GGG + Chr3:16783799-16783818 None:intergenic 50.0%
GAACCAGAAAAACCCCATGC+AGG + Chr3:16783051-16783070 None:intergenic 50.0%
GAGAGACCAAGGTGAAGAGT+GGG - Chr3:16783889-16783908 MsG0380012458.01.T01:intron 50.0%
GAGGAAGGATATGCACAAGG+TGG - Chr3:16782718-16782737 MsG0380012458.01.T01:CDS 50.0%
GAGTGGGCCTACTCAATGAA+AGG + Chr3:16781978-16781997 None:intergenic 50.0%
GCTTGCGAGGAGAATGTTCA+AGG + Chr3:16782993-16783012 None:intergenic 50.0%
GGGGAAAAACTAGGGTTAGG+TGG + Chr3:16781217-16781236 None:intergenic 50.0%
GGTCAGTTTCCACATTGGTG+TGG - Chr3:16784348-16784367 MsG0380012458.01.T01:five_prime_UTR 50.0%
GTCCCAAACATGTTGGTCCT+GGG + Chr3:16783817-16783836 None:intergenic 50.0%
TCCTGGGCTTGAATCAGATG+AGG + Chr3:16783801-16783820 None:intergenic 50.0%
TGATGCTGAGGAGATGCTTG+AGG - Chr3:16782466-16782485 MsG0380012458.01.T01:CDS 50.0%
TGCTACCCATGAGGAAGATG+AGG - Chr3:16783575-16783594 MsG0380012458.01.T01:intron 50.0%
! GTTCCTGCATGGGGTTTTTC+TGG - Chr3:16783045-16783064 MsG0380012458.01.T01:CDS 50.0%
! TGGGTGTCGCAATCATCATC+AGG + Chr3:16782557-16782576 None:intergenic 50.0%
!! ACCTGTGATGGACATCCTAG+AGG - Chr3:16782772-16782791 MsG0380012458.01.T01:CDS 50.0%
!! ATGGAGCATTGTGATGCACC+AGG - Chr3:16783978-16783997 MsG0380012458.01.T01:intron 50.0%
!! CCTGTGATGGACATCCTAGA+GGG - Chr3:16782773-16782792 MsG0380012458.01.T01:CDS 50.0%
!! CTGTGATGGACATCCTAGAG+GGG - Chr3:16782774-16782793 MsG0380012458.01.T01:CDS 50.0%
!! GAATTGGGGTTTGCTGGCAT+GGG - Chr3:16783297-16783316 MsG0380012458.01.T01:intron 50.0%
!! TGAATTGGGGTTTGCTGGCA+TGG - Chr3:16783296-16783315 MsG0380012458.01.T01:intron 50.0%
!! TGGAGCATTGTGATGCACCA+GGG - Chr3:16783979-16783998 MsG0380012458.01.T01:intron 50.0%
AACGCGGCGGAAGAAGAAAG+GGG + Chr3:16781236-16781255 None:intergenic 55.0%
AGCATTGTGATGCACCAGGG+TGG - Chr3:16783982-16784001 MsG0380012458.01.T01:intron 55.0%
ATGGACATCCTAGAGGGGCT+GGG - Chr3:16782779-16782798 MsG0380012458.01.T01:CDS 55.0%
CCAACTGATACAGGCTTGCG+AGG + Chr3:16783006-16783025 None:intergenic 55.0%
CCCTCATCTGATTCAAGCCC+AGG - Chr3:16783797-16783816 MsG0380012458.01.T01:intron 55.0%
CCTCGCAAGCCTGTATCAGT+TGG - Chr3:16783003-16783022 MsG0380012458.01.T01:CDS 55.0%
CGGATCGAGAAGATCGGAGA+CGG + Chr3:16781415-16781434 None:intergenic 55.0%
CGTCCCAAACATGTTGGTCC+TGG + Chr3:16783818-16783837 None:intergenic 55.0%
GAAAGCGAGCTGAGCAGAAC+AGG - Chr3:16783490-16783509 MsG0380012458.01.T01:intron 55.0%
GATTGTAGCTGCGAGGACAG+TGG - Chr3:16783195-16783214 MsG0380012458.01.T01:intron 55.0%
GCATTGTGATGCACCAGGGT+GGG - Chr3:16783983-16784002 MsG0380012458.01.T01:intron 55.0%
TCAGTCCGGAACGACCCATA+AGG - Chr3:16782935-16782954 MsG0380012458.01.T01:intron 55.0%
TCGCTGGGACCTGCATGTTT+CGG + Chr3:16782506-16782525 None:intergenic 55.0%
TGCTGGCATGGGAGAACAAG+TGG - Chr3:16783308-16783327 MsG0380012458.01.T01:intron 55.0%
!! CCCTCTAGGATGTCCATCAC+AGG + Chr3:16782776-16782795 None:intergenic 55.0%
ACAAAGCCAGGATCCCACCC+TGG + Chr3:16783999-16784018 None:intergenic 60.0%
CGCTGGGACCTGCATGTTTC+GGG + Chr3:16782505-16782524 None:intergenic 60.0%
CTGGTGGCCCAAGAAGAAGC+AGG + Chr3:16782826-16782845 None:intergenic 60.0%
GATGGACATCCTAGAGGGGC+TGG - Chr3:16782778-16782797 MsG0380012458.01.T01:CDS 60.0%
GCTGGGGACTCTCCTGTGAT+AGG - Chr3:16782796-16782815 MsG0380012458.01.T01:CDS 60.0%
TGGACATCCTAGAGGGGCTG+GGG - Chr3:16782780-16782799 MsG0380012458.01.T01:CDS 60.0%
GATGCACCAGGGTGGGATCC+TGG - Chr3:16783990-16784009 MsG0380012458.01.T01:intron 65.0%
GGAGAGTCCCCAGCCCCTCT+AGG + Chr3:16782790-16782809 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 16781106 16784470 16781106 ID=MsG0380012458.01;Name=MsG0380012458.01
Chr3 mRNA 16781106 16784470 16781106 ID=MsG0380012458.01.T01;Parent=MsG0380012458.01;Name=MsG0380012458.01.T01;_AED=0.30;_eAED=0.30;_QI=343|1|1|1|0.5|0.66|3|355|514
Chr3 exon 16781106 16782857 16781106 ID=MsG0380012458.01.T01:exon:21956;Parent=MsG0380012458.01.T01
Chr3 exon 16782983 16783136 16782983 ID=MsG0380012458.01.T01:exon:21955;Parent=MsG0380012458.01.T01
Chr3 exon 16784134 16784470 16784134 ID=MsG0380012458.01.T01:exon:21954;Parent=MsG0380012458.01.T01
Chr3 five_prime_UTR 16784134 16784470 16784134 ID=MsG0380012458.01.T01:five_prime_utr;Parent=MsG0380012458.01.T01
Chr3 five_prime_UTR 16783131 16783136 16783131 ID=MsG0380012458.01.T01:five_prime_utr;Parent=MsG0380012458.01.T01
Chr3 CDS 16782983 16783130 16782983 ID=MsG0380012458.01.T01:cds;Parent=MsG0380012458.01.T01
Chr3 CDS 16781461 16782857 16781461 ID=MsG0380012458.01.T01:cds;Parent=MsG0380012458.01.T01
Chr3 three_prime_UTR 16781106 16781460 16781106 ID=MsG0380012458.01.T01:three_prime_utr;Parent=MsG0380012458.01.T01
Gene Sequence

>MsG0380012458.01.T01

ATGGTGCAGAAACGTCCTTTTGATGCTGAGGAGATGCTTGAGGTGTCATTCAAACACCCGAAACATGCAGGTCCCAGCGATTATCTACCGTTATCAGAATCTGTTTTTCCTGATGATGATTGCGACACCCATTTGGCTAAGACTTCAGAGGAAGGATATGCACAAGGTGGTAGTGATTGTAATGAGAAGCTTGCTGTTGAAACCTGTGATGGACATCCTAGAGGGGCTGGGGACTCTCCTGTGATAGGTATTCCTGCTTCTTCTTGGGCCACCAGTTGCACTACCGAAGATGATCACCGTTCAGAACAGCCTATACATCTTCCCTTTTTCCATGAGTACTTCAGTCCAGAACGGCCAATATATTTCAGTCCGGAACGACCCATAAGGACATTAACTCATGAGGACCTCTATTCCATACTCCTTGAACATTCTCCTCGCAAGCCTGTATCAGTTGGAGCTGATCATCAAGCTGATGTTCCTGCATGGGGTTTTTCTGGTTCAGATTCAAACCTCAATGTTTGGGATGGGGATGAAGCTGAAAAAAGATCGATGGGGACCTGTATTATGCCTATGCCTGAGATGGAATTATCTAGCCTTGATGATGAAGTTGGAAAAGGAAGAACTGATTGTAGCTGCGAGGACAGTGGATCTATGAGATGTGTAAGACAACATATAATGGAAGAAAGGAAAAAACTATTAAAAACCCTTGGGATTGAGAAATTTATTGAATTGGGGTTTGCTGGCATGGGAGAACAAGTGGCTCAAAAGTGGACTCAAGAAGATGAACATCTATTTCACAAGGTAGTCTTCAACAATCCAGCATCCCTCAACAAGAATTTCTGGAACTATCTTTCCATTGTTTTTCCTTCACGAAGCAAAAAGGAGATAGTGAGTTACTACTTTAATGTCTTCATGCTTCGAAAGCGAGCTGAGCAGAACAGGAACCACCTATTAAGTGCTGATAGTGATAATGATGAATGGCAAGGTAGTGACGACAATGAAGTTGCTACCCATGAGGAAGATGAGGATTCTGTTGCTGAGTATCCCATCTATGAAGATGATGCTTGTAACAATAATAACCGCAATGATGATCACTTAGAGGATTATGATGATGATTTTTCTGAAGATGAAAATTGTGATGTTAATGGAATAGTAGATCAGACCAAGAGGAACATTGATGGTGATTCTAAGTATGATTTTCTTGATATGCATCACTCTAGTGGTTCCCCTCATCTGATTCAAGCCCAGGACCAACATGTTTGGGACGAAAAAGTTAAACATGATCCATACACATCACATGACATGGGAGTTGCTTCAAGAGAGACCAAGGTGAAGAGTGGGAATGGTGATCATTGGGGCAGTAACTATAATAATGGAGTAAGCAATGGTTACAGCCAAGGGTATGTGATGGAGCATTGTGATGCACCAGGGTGGGATCCTGGCTTTGTATCTTGCTCTAAAAGTAAGATGGATTTCTTACCTACATGTAGCATGATTGAAGAAGTTTTTGGAGATGGACGAAGGCAAGACATGAGAAGAGCTTGA

Protein sequence

>MsG0380012458.01.T01

MVQKRPFDAEEMLEVSFKHPKHAGPSDYLPLSESVFPDDDCDTHLAKTSEEGYAQGGSDCNEKLAVETCDGHPRGAGDSPVIGIPASSWATSCTTEDDHRSEQPIHLPFFHEYFSPERPIYFSPERPIRTLTHEDLYSILLEHSPRKPVSVGADHQADVPAWGFSGSDSNLNVWDGDEAEKRSMGTCIMPMPEMELSSLDDEVGKGRTDCSCEDSGSMRCVRQHIMEERKKLLKTLGIEKFIELGFAGMGEQVAQKWTQEDEHLFHKVVFNNPASLNKNFWNYLSIVFPSRSKKEIVSYYFNVFMLRKRAEQNRNHLLSADSDNDEWQGSDDNEVATHEEDEDSVAEYPIYEDDACNNNNRNDDHLEDYDDDFSEDENCDVNGIVDQTKRNIDGDSKYDFLDMHHSSGSPHLIQAQDQHVWDEKVKHDPYTSHDMGVASRETKVKSGNGDHWGSNYNNGVSNGYSQGYVMEHCDAPGWDPGFVSCSKSKMDFLPTCSMIEEVFGDGRRQDMRRA*