Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016845.01.T01 | XP_003602630.1 | 92.098 | 367 | 2 | 1 | 1 | 340 | 277 | 643 | 0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016845.01.T01 | Q9SIT6 | 69.377 | 369 | 77 | 5 | 2 | 338 | 279 | 643 | 3.72E-175 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016845.01.T01 | G7JC32 | 92.098 | 367 | 2 | 1 | 1 | 340 | 277 | 643 | 0.0 | 677 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000367.01 | MsG0380016845.01 | 0.824290 | 8.743197e-54 | 7.711024e-51 |
| MsG0180000556.01 | MsG0380016845.01 | 0.819078 | 1.402774e-52 | 1.068722e-49 |
| MsG0180001084.01 | MsG0380016845.01 | 0.807307 | 5.388867e-50 | 2.991389e-47 |
| MsG0180001486.01 | MsG0380016845.01 | 0.800480 | 1.413386e-48 | 6.587920e-46 |
| MsG0180001503.01 | MsG0380016845.01 | 0.810063 | 1.388532e-50 | 8.288171e-48 |
| MsG0180001513.01 | MsG0380016845.01 | 0.804589 | 2.008642e-49 | 1.039706e-46 |
| MsG0180001515.01 | MsG0380016845.01 | 0.800472 | 1.418433e-48 | 6.610154e-46 |
| MsG0180001614.01 | MsG0380016845.01 | -0.809946 | 1.471433e-50 | 8.756055e-48 |
| MsG0180002808.01 | MsG0380016845.01 | 0.806215 | 9.165040e-50 | 4.946626e-47 |
| MsG0180003484.01 | MsG0380016845.01 | 0.817892 | 2.605424e-52 | 1.921123e-49 |
| MsG0180005127.01 | MsG0380016845.01 | 0.820680 | 6.036147e-53 | 4.807929e-50 |
| MsG0180005146.01 | MsG0380016845.01 | 0.822719 | 2.037512e-53 | 1.719163e-50 |
| MsG0180005633.01 | MsG0380016845.01 | 0.801120 | 1.045971e-48 | 4.955397e-46 |
| MsG0180005762.01 | MsG0380016845.01 | 0.833121 | 6.398294e-56 | 7.299623e-53 |
| MsG0180006010.01 | MsG0380016845.01 | 0.807813 | 4.207800e-50 | 2.366665e-47 |
| MsG0180006253.01 | MsG0380016845.01 | 0.806902 | 6.565127e-50 | 3.606058e-47 |
| MsG0280006316.01 | MsG0380016845.01 | 0.831072 | 2.054081e-55 | 2.204932e-52 |
| MsG0280010617.01 | MsG0380016845.01 | 0.829298 | 5.567540e-55 | 5.676000e-52 |
| MsG0280011016.01 | MsG0380016845.01 | 0.807127 | 5.884286e-50 | 3.250859e-47 |
| MsG0280011271.01 | MsG0380016845.01 | 0.803453 | 3.460421e-49 | 1.739618e-46 |
| MsG0380011686.01 | MsG0380016845.01 | 0.807588 | 4.696825e-50 | 2.626120e-47 |
| MsG0380014231.01 | MsG0380016845.01 | -0.803524 | 3.346259e-49 | 1.685376e-46 |
| MsG0380016031.01 | MsG0380016845.01 | 0.822588 | 2.185882e-53 | 1.837643e-50 |
| MsG0380016458.01 | MsG0380016845.01 | 0.813024 | 3.154692e-51 | 2.037090e-48 |
| MsG0380016845.01 | MsG0380017658.01 | 0.808902 | 2.464874e-50 | 1.426544e-47 |
| MsG0380016845.01 | MsG0480018362.01 | 0.808943 | 2.415712e-50 | 1.399655e-47 |
| MsG0380016845.01 | MsG0480019666.01 | 0.805649 | 1.205337e-49 | 6.411613e-47 |
| MsG0380016845.01 | MsG0480021226.01 | 0.804511 | 2.085587e-49 | 1.077321e-46 |
| MsG0380016845.01 | MsG0480022833.01 | 0.802827 | 4.663815e-49 | 2.307518e-46 |
| MsG0380016845.01 | MsG0480023067.01 | 0.816449 | 5.498310e-52 | 3.896896e-49 |
| MsG0380016845.01 | MsG0480023575.01 | 0.819192 | 1.321603e-52 | 1.010042e-49 |
| MsG0380016845.01 | MsG0580025023.01 | 0.826374 | 2.809864e-54 | 2.630465e-51 |
| MsG0380016845.01 | MsG0580025024.01 | 0.807690 | 4.468059e-50 | 2.504960e-47 |
| MsG0380016845.01 | MsG0580025463.01 | 0.808262 | 3.376518e-50 | 1.921814e-47 |
| MsG0380016845.01 | MsG0580025896.01 | 0.813856 | 2.070701e-51 | 1.367644e-48 |
| MsG0380016845.01 | MsG0580026492.01 | 0.809459 | 1.872849e-50 | 1.100199e-47 |
| MsG0380016845.01 | MsG0680031356.01 | 0.808475 | 3.041724e-50 | 1.740910e-47 |
| MsG0380016845.01 | MsG0680032461.01 | 0.805558 | 1.259767e-49 | 6.685176e-47 |
| MsG0380016845.01 | MsG0780036054.01 | 0.814968 | 1.176006e-51 | 8.004288e-49 |
| MsG0380016845.01 | MsG0780038305.01 | 0.804369 | 2.232985e-49 | 1.149313e-46 |
| MsG0380016845.01 | MsG0780038919.01 | 0.802316 | 5.944846e-49 | 2.903242e-46 |
| MsG0380016845.01 | MsG0780039431.01 | 0.821621 | 3.663775e-53 | 2.995897e-50 |
| MsG0380016845.01 | MsG0780040034.01 | 0.805178 | 1.513020e-49 | 7.951434e-47 |
| MsG0380016845.01 | MsG0780040081.01 | 0.824885 | 6.333975e-54 | 5.683572e-51 |
| MsG0380016845.01 | MsG0780040670.01 | 0.800220 | 1.596337e-48 | 7.391980e-46 |
| MsG0380016845.01 | MsG0780040719.01 | 0.817889 | 2.609272e-52 | 1.923815e-49 |
| MsG0380016845.01 | MsG0780040977.01 | 0.822226 | 2.653375e-53 | 2.207436e-50 |
| MsG0380016845.01 | MsG0780040991.01 | 0.854707 | 1.028627e-61 | 2.317797e-58 |
| MsG0380016845.01 | MsG0880044545.01 | -0.823228 | 1.550742e-53 | 1.327315e-50 |
| MsG0380016845.01 | MsG0880045991.01 | 0.816166 | 6.362672e-52 | 4.475072e-49 |
| MsG0380016845.01 | MsG0880046402.01 | 0.820043 | 8.446733e-53 | 6.611328e-50 |
| MsG0380016845.01 | MsG0880046403.01 | 0.826725 | 2.317606e-54 | 2.191217e-51 |
| MsG0380016845.01 | MsG0880046923.01 | 0.802792 | 4.742118e-49 | 2.344071e-46 |
| MsG0380016845.01 | MsG0880047697.01 | 0.815480 | 9.049929e-52 | 6.247116e-49 |
| MsG0280007504.01 | MsG0380016845.01 | 0.805322 | 1.411510e-49 | 7.445417e-47 |
| MsG0280007786.01 | MsG0380016845.01 | 0.801732 | 7.836967e-49 | 3.770448e-46 |
| MsG0280008226.01 | MsG0380016845.01 | 0.813793 | 2.138378e-51 | 1.409942e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016845.01.T01 | MTR_3g096410 | 92.098 | 367 | 2 | 1 | 1 | 340 | 277 | 643 | 0.0 | 677 |
| MsG0380016845.01.T01 | MTR_8g093840 | 78.706 | 371 | 45 | 3 | 1 | 338 | 272 | 641 | 0.0 | 569 |
| MsG0380016845.01.T01 | MTR_2g078080 | 47.384 | 344 | 172 | 4 | 2 | 337 | 269 | 611 | 9.81e-108 | 327 |
| MsG0380016845.01.T01 | MTR_4g116540 | 42.241 | 348 | 190 | 5 | 1 | 338 | 296 | 642 | 1.04e-90 | 284 |
| MsG0380016845.01.T01 | MTR_1g099570 | 40.688 | 349 | 195 | 5 | 2 | 339 | 263 | 610 | 3.31e-85 | 269 |
| MsG0380016845.01.T01 | MTR_1g115790 | 33.115 | 305 | 170 | 2 | 59 | 330 | 442 | 745 | 2.55e-52 | 184 |
| MsG0380016845.01.T01 | MTR_7g100120 | 30.556 | 396 | 207 | 7 | 2 | 330 | 347 | 741 | 1.22e-49 | 177 |
| MsG0380016845.01.T01 | MTR_8g107450 | 35.017 | 297 | 165 | 6 | 59 | 332 | 519 | 810 | 7.60e-47 | 169 |
| MsG0380016845.01.T01 | MTR_5g030910 | 34.932 | 292 | 178 | 4 | 45 | 332 | 437 | 720 | 4.88e-44 | 161 |
| MsG0380016845.01.T01 | MTR_4g094050 | 27.941 | 272 | 192 | 4 | 64 | 331 | 378 | 649 | 5.69e-30 | 120 |
| MsG0380016845.01.T01 | MTR_4g094060 | 29.197 | 274 | 186 | 5 | 64 | 331 | 378 | 649 | 8.54e-30 | 120 |
| MsG0380016845.01.T01 | MTR_4g094010 | 26.471 | 272 | 196 | 4 | 64 | 331 | 357 | 628 | 9.39e-28 | 114 |
| MsG0380016845.01.T01 | MTR_4g054020 | 25.170 | 294 | 214 | 6 | 43 | 331 | 255 | 547 | 1.29e-23 | 102 |
| MsG0380016845.01.T01 | MTR_6g066240 | 23.795 | 332 | 212 | 6 | 16 | 331 | 341 | 647 | 5.35e-20 | 91.7 |
| MsG0380016845.01.T01 | MTR_4g076970 | 26.316 | 285 | 203 | 5 | 53 | 333 | 355 | 636 | 1.85e-19 | 89.7 |
| MsG0380016845.01.T01 | MTR_4g094090 | 23.358 | 274 | 202 | 5 | 66 | 333 | 335 | 606 | 8.48e-19 | 87.8 |
| MsG0380016845.01.T01 | MTR_4g093845 | 22.727 | 330 | 227 | 9 | 17 | 333 | 318 | 632 | 3.20e-18 | 86.3 |
| MsG0380016845.01.T01 | MTR_4g076900 | 24.221 | 289 | 208 | 6 | 51 | 333 | 331 | 614 | 3.59e-17 | 82.8 |
| MsG0380016845.01.T01 | MTR_3g463680 | 25.234 | 214 | 146 | 3 | 79 | 283 | 1155 | 1363 | 6.81e-17 | 82.4 |
| MsG0380016845.01.T01 | MTR_1g108340 | 21.622 | 222 | 171 | 2 | 88 | 308 | 418 | 637 | 1.99e-13 | 71.6 |
| MsG0380016845.01.T01 | MTR_1g108340 | 21.622 | 222 | 171 | 2 | 88 | 308 | 418 | 637 | 2.19e-13 | 71.6 |
| MsG0380016845.01.T01 | MTR_5g025470 | 31.633 | 196 | 125 | 6 | 138 | 331 | 447 | 635 | 9.04e-13 | 69.7 |
| MsG0380016845.01.T01 | MTR_8g014360 | 23.009 | 226 | 150 | 4 | 119 | 332 | 573 | 786 | 2.09e-12 | 68.9 |
| MsG0380016845.01.T01 | MTR_2g079980 | 23.125 | 320 | 235 | 8 | 13 | 330 | 277 | 587 | 2.59e-12 | 68.2 |
| MsG0380016845.01.T01 | MTR_7g098780 | 21.918 | 219 | 163 | 4 | 86 | 299 | 1164 | 1379 | 2.97e-12 | 68.2 |
| MsG0380016845.01.T01 | MTR_8g014360 | 23.009 | 226 | 150 | 4 | 119 | 332 | 573 | 786 | 2.99e-12 | 68.2 |
| MsG0380016845.01.T01 | MTR_1g054960 | 25.097 | 259 | 163 | 8 | 80 | 331 | 348 | 582 | 3.81e-12 | 67.8 |
| MsG0380016845.01.T01 | MTR_4g123850 | 21.401 | 257 | 195 | 5 | 80 | 332 | 519 | 772 | 8.36e-12 | 67.0 |
| MsG0380016845.01.T01 | MTR_4g076940 | 23.759 | 282 | 205 | 4 | 65 | 340 | 275 | 552 | 9.61e-12 | 66.2 |
| MsG0380016845.01.T01 | MTR_4g076940 | 24.000 | 275 | 199 | 4 | 65 | 333 | 408 | 678 | 1.12e-11 | 66.2 |
| MsG0380016845.01.T01 | MTR_4g076940 | 23.759 | 282 | 205 | 4 | 65 | 340 | 368 | 645 | 1.41e-11 | 65.9 |
| MsG0380016845.01.T01 | MTR_7g098800 | 21.782 | 202 | 154 | 1 | 86 | 283 | 1122 | 1323 | 1.52e-11 | 66.2 |
| MsG0380016845.01.T01 | MTR_7g098320 | 21.339 | 239 | 172 | 4 | 59 | 287 | 1167 | 1399 | 2.42e-11 | 65.5 |
| MsG0380016845.01.T01 | MTR_4g011630 | 24.227 | 194 | 139 | 2 | 96 | 283 | 1195 | 1386 | 3.46e-11 | 65.1 |
| MsG0380016845.01.T01 | MTR_2g102640 | 22.628 | 274 | 184 | 7 | 64 | 322 | 499 | 759 | 3.78e-11 | 65.1 |
| MsG0380016845.01.T01 | MTR_7g098760 | 20.161 | 248 | 182 | 4 | 56 | 293 | 1169 | 1410 | 4.37e-11 | 64.7 |
| MsG0380016845.01.T01 | MTR_1g093990 | 25.000 | 204 | 141 | 5 | 130 | 331 | 466 | 659 | 5.96e-11 | 63.9 |
| MsG0380016845.01.T01 | MTR_1g050525 | 22.907 | 227 | 170 | 3 | 76 | 298 | 1203 | 1428 | 6.73e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016845.01.T01 | AT2G13610 | 69.377 | 369 | 77 | 5 | 2 | 338 | 279 | 643 | 3.79e-176 | 503 |
| MsG0380016845.01.T01 | AT1G53270 | 47.368 | 342 | 156 | 6 | 2 | 339 | 269 | 590 | 1.02e-98 | 303 |
| MsG0380016845.01.T01 | AT5G19410 | 43.235 | 340 | 185 | 4 | 1 | 338 | 290 | 623 | 4.13e-94 | 293 |
| MsG0380016845.01.T01 | AT5G19410 | 43.235 | 340 | 185 | 4 | 1 | 338 | 299 | 632 | 5.36e-94 | 293 |
| MsG0380016845.01.T01 | AT5G52860 | 41.520 | 342 | 184 | 5 | 2 | 337 | 256 | 587 | 1.79e-83 | 264 |
| MsG0380016845.01.T01 | AT4G25750 | 40.116 | 344 | 187 | 6 | 2 | 337 | 243 | 575 | 1.55e-80 | 256 |
| MsG0380016845.01.T01 | AT3G55110 | 28.141 | 398 | 225 | 5 | 2 | 339 | 312 | 708 | 5.11e-54 | 188 |
| MsG0380016845.01.T01 | AT3G55090 | 33.115 | 305 | 170 | 3 | 59 | 330 | 424 | 727 | 6.01e-52 | 183 |
| MsG0380016845.01.T01 | AT5G13580 | 32.781 | 302 | 169 | 2 | 59 | 327 | 415 | 715 | 1.22e-51 | 182 |
| MsG0380016845.01.T01 | AT2G37360 | 32.131 | 305 | 173 | 3 | 59 | 330 | 443 | 746 | 2.76e-51 | 181 |
| MsG0380016845.01.T01 | AT2G39350 | 29.208 | 404 | 210 | 6 | 2 | 330 | 329 | 731 | 1.27e-49 | 177 |
| MsG0380016845.01.T01 | AT3G55100 | 31.457 | 302 | 173 | 3 | 59 | 327 | 350 | 650 | 1.11e-48 | 173 |
| MsG0380016845.01.T01 | AT3G55100 | 31.457 | 302 | 173 | 3 | 59 | 327 | 350 | 650 | 1.11e-48 | 173 |
| MsG0380016845.01.T01 | AT3G55130 | 31.013 | 316 | 182 | 4 | 2 | 281 | 320 | 635 | 1.59e-48 | 174 |
| MsG0380016845.01.T01 | AT3G53510 | 33.770 | 305 | 168 | 3 | 59 | 330 | 427 | 730 | 1.09e-44 | 163 |
| MsG0380016845.01.T01 | AT3G21090 | 26.667 | 285 | 202 | 6 | 53 | 333 | 349 | 630 | 2.68e-20 | 92.4 |
| MsG0380016845.01.T01 | AT2G01320 | 21.846 | 325 | 234 | 5 | 2 | 308 | 312 | 634 | 6.57e-17 | 82.4 |
| MsG0380016845.01.T01 | AT2G01320 | 21.846 | 325 | 234 | 5 | 2 | 308 | 312 | 634 | 6.57e-17 | 82.4 |
| MsG0380016845.01.T01 | AT2G01320 | 21.846 | 325 | 234 | 5 | 2 | 308 | 312 | 634 | 6.88e-17 | 82.4 |
| MsG0380016845.01.T01 | AT2G01320 | 21.846 | 325 | 234 | 5 | 2 | 308 | 312 | 634 | 7.15e-17 | 82.0 |
| MsG0380016845.01.T01 | AT1G17840 | 25.510 | 294 | 200 | 7 | 28 | 316 | 355 | 634 | 1.13e-16 | 81.6 |
| MsG0380016845.01.T01 | AT2G29940 | 23.506 | 251 | 165 | 4 | 59 | 287 | 1145 | 1390 | 1.64e-16 | 81.3 |
| MsG0380016845.01.T01 | AT2G29940 | 24.519 | 208 | 148 | 3 | 78 | 279 | 525 | 729 | 1.86e-13 | 72.0 |
| MsG0380016845.01.T01 | AT2G01320 | 21.725 | 313 | 225 | 5 | 2 | 296 | 312 | 622 | 5.50e-16 | 79.3 |
| MsG0380016845.01.T01 | AT2G01320 | 21.725 | 313 | 225 | 5 | 2 | 296 | 312 | 622 | 5.50e-16 | 79.3 |
| MsG0380016845.01.T01 | AT1G51500 | 25.430 | 291 | 210 | 6 | 47 | 333 | 344 | 631 | 1.21e-15 | 78.6 |
| MsG0380016845.01.T01 | AT1G51460 | 24.042 | 287 | 207 | 6 | 53 | 333 | 344 | 625 | 1.45e-15 | 78.2 |
| MsG0380016845.01.T01 | AT3G53480 | 24.519 | 208 | 143 | 3 | 79 | 277 | 1189 | 1391 | 1.11e-14 | 75.9 |
| MsG0380016845.01.T01 | AT1G15210 | 21.888 | 233 | 177 | 3 | 79 | 307 | 1179 | 1410 | 5.76e-13 | 70.5 |
| MsG0380016845.01.T01 | AT1G31770 | 29.949 | 197 | 127 | 6 | 138 | 331 | 455 | 643 | 7.41e-13 | 70.1 |
| MsG0380016845.01.T01 | AT1G59870 | 22.269 | 238 | 170 | 4 | 79 | 307 | 1206 | 1437 | 1.36e-12 | 69.3 |
| MsG0380016845.01.T01 | AT1G71960 | 25.632 | 277 | 182 | 8 | 69 | 331 | 392 | 658 | 2.32e-12 | 68.6 |
| MsG0380016845.01.T01 | AT3G25620 | 27.876 | 226 | 143 | 6 | 58 | 268 | 390 | 610 | 4.48e-12 | 67.4 |
| MsG0380016845.01.T01 | AT2G37280 | 21.327 | 211 | 158 | 4 | 73 | 277 | 1175 | 1383 | 1.35e-11 | 66.2 |
| MsG0380016845.01.T01 | AT2G37280 | 21.327 | 211 | 158 | 4 | 73 | 277 | 988 | 1196 | 1.51e-11 | 66.2 |
| MsG0380016845.01.T01 | AT2G37280 | 21.327 | 211 | 158 | 4 | 73 | 277 | 1146 | 1354 | 1.55e-11 | 66.2 |
| MsG0380016845.01.T01 | AT1G15520 | 21.875 | 224 | 169 | 2 | 59 | 277 | 1144 | 1366 | 2.86e-11 | 65.5 |
| MsG0380016845.01.T01 | AT5G06530 | 24.179 | 335 | 210 | 12 | 6 | 331 | 446 | 745 | 4.01e-11 | 64.7 |
| MsG0380016845.01.T01 | AT5G06530 | 24.179 | 335 | 210 | 12 | 6 | 331 | 446 | 745 | 4.01e-11 | 64.7 |
Find 65 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGAGCTCTTTGCATTT+AGG | 0.190949 | 3:+88542990 | MsG0380016845.01.T01:CDS |
| CTTCAAATGGATACTTAAAT+AGG | 0.192754 | 3:-88543531 | None:intergenic |
| ACAATTCAGATGCTGATTTC+AGG | 0.220830 | 3:+88543013 | MsG0380016845.01.T01:CDS |
| TATTCGCAGTGCCGCTTTAC+TGG | 0.247389 | 3:+88543278 | MsG0380016845.01.T01:CDS |
| TGAATCCATTGAGACTATTC+AGG | 0.297778 | 3:+88542716 | MsG0380016845.01.T01:CDS |
| GGTTCTTCTTTCTTGTTCTC+TGG | 0.340313 | 3:+88543451 | MsG0380016845.01.T01:CDS |
| TCGATAATCGCCGGTGTCAT+TGG | 0.342293 | 3:+88543430 | MsG0380016845.01.T01:CDS |
| GAATTTCCAACAATGAAATT+AGG | 0.353494 | 3:-88543409 | None:intergenic |
| TGCATGAAAATCCAGTAGTT+TGG | 0.353525 | 3:-88543499 | None:intergenic |
| ATGGAGGAGAGAGTAGTAGA+TGG | 0.363426 | 3:+88543653 | MsG0380016845.01.T01:CDS |
| AGTAGTAGATGGAAGAATGT+TGG | 0.370837 | 3:+88543664 | MsG0380016845.01.T01:CDS |
| AAGTGCTTAGAGTACATGTT+TGG | 0.376996 | 3:+88543586 | MsG0380016845.01.T01:CDS |
| GTAGTAGATGGAAGAATGTT+GGG | 0.378315 | 3:+88543665 | MsG0380016845.01.T01:CDS |
| GTGCCGCTTTACTGGATTAT+CGG | 0.381246 | 3:+88543286 | MsG0380016845.01.T01:CDS |
| AAGCGGCACTGCGAATAAAA+TGG | 0.382829 | 3:-88543272 | None:intergenic |
| GAGGATGTACTTAAAGAAGA+AGG | 0.382957 | 3:+88543628 | MsG0380016845.01.T01:CDS |
| AGTGCTTAGAGTACATGTTT+GGG | 0.394428 | 3:+88543587 | MsG0380016845.01.T01:CDS |
| GAACCACCGAAACGATTACT+AGG | 0.397961 | 3:+88542768 | MsG0380016845.01.T01:CDS |
| GTAGTTTGGAATTTCATGAT+TGG | 0.402726 | 3:-88543485 | None:intergenic |
| TTTATTAGAAACCCTTCAAA+TGG | 0.404458 | 3:-88543544 | None:intergenic |
| CTCTAAGCACTTCTTTGAGT+TGG | 0.406024 | 3:-88543575 | None:intergenic |
| ATCATGAAATTCCAAACTAC+TGG | 0.413131 | 3:+88543488 | MsG0380016845.01.T01:CDS |
| TTCAAATGGATACTTAAATA+GGG | 0.414356 | 3:-88543530 | None:intergenic |
| ATCTTTGAGATTACCAAAGA+TGG | 0.416838 | 3:-88543050 | None:intergenic |
| CTGGTGCCTAATTTCATTGT+TGG | 0.418696 | 3:+88543403 | MsG0380016845.01.T01:CDS |
| ATGGCTAGTATGAGTAGAAA+TGG | 0.425835 | 3:-88543253 | None:intergenic |
| TGTGGTCTGTTTCAGTGCTC+TGG | 0.435440 | 3:+88543384 | MsG0380016845.01.T01:CDS |
| TTGTTCCTGAATAGTCTCAA+TGG | 0.442015 | 3:-88542721 | None:intergenic |
| CTATTTAAGTATCCATTTGA+AGG | 0.459583 | 3:+88543532 | MsG0380016845.01.T01:CDS |
| TCAGATGCTGATTTCAGGAC+TGG | 0.462290 | 3:+88543018 | MsG0380016845.01.T01:CDS |
| AAACTATGATTCTAGCTCAT+AGG | 0.477766 | 3:+88542945 | MsG0380016845.01.T01:CDS |
| GTATACCGCAAACTCGGTTG+TGG | 0.479637 | 3:+88543366 | MsG0380016845.01.T01:CDS |
| ACAGACCACAACCGAGTTTG+CGG | 0.488321 | 3:-88543371 | None:intergenic |
| ATGGAAGAATGTTGGGGTGA+TGG | 0.503312 | 3:+88543672 | MsG0380016845.01.T01:CDS |
| TCATCTTATGCTATTGCCAA+TGG | 0.503545 | 3:+88543217 | MsG0380016845.01.T01:CDS |
| CTAAAGAAAGGCAATGATCA+AGG | 0.507018 | 3:+88542801 | MsG0380016845.01.T01:CDS |
| AGAAAGGGAGATTCTAATGA+AGG | 0.510645 | 3:+88543168 | MsG0380016845.01.T01:CDS |
| ATCTTTGGTAATCTCAAAGA+TGG | 0.517100 | 3:+88543052 | MsG0380016845.01.T01:CDS |
| GTACTTAAAGAAGAAGGGTA+TGG | 0.517341 | 3:+88543634 | MsG0380016845.01.T01:CDS |
| GTAGAAATGGCAAGTAAACT+AGG | 0.526756 | 3:-88543240 | None:intergenic |
| ATGCAAAGAGCTCCTTTGTA+CGG | 0.528480 | 3:-88542985 | None:intergenic |
| AGGATGTACTTAAAGAAGAA+GGG | 0.529648 | 3:+88543629 | MsG0380016845.01.T01:CDS |
| CGGTCTCAACCAAAATTTCA+CGG | 0.533524 | 3:+88543306 | MsG0380016845.01.T01:CDS |
| CTTAAAGAAGAAGGGTATGG+AGG | 0.535146 | 3:+88543637 | MsG0380016845.01.T01:CDS |
| TCAACAACGTTAACATGAAG+AGG | 0.537448 | 3:-88542684 | None:intergenic |
| TATTTAAGTATCCATTTGAA+GGG | 0.540090 | 3:+88543533 | MsG0380016845.01.T01:CDS |
| ATTGTCCCTAGTAATCGTTT+CGG | 0.540509 | 3:-88542774 | None:intergenic |
| GGGACAATGCTACTAAAGAA+AGG | 0.544034 | 3:+88542789 | MsG0380016845.01.T01:CDS |
| GTCCCTAGTAATCGTTTCGG+TGG | 0.545843 | 3:-88542771 | None:intergenic |
| TAGTAGATGGAAGAATGTTG+GGG | 0.575818 | 3:+88543666 | MsG0380016845.01.T01:CDS |
| TGGCAAGTAAACTAGGCCAT+TGG | 0.579106 | 3:-88543233 | None:intergenic |
| TCTAGTGGGAGCAGAACAAA+GGG | 0.579527 | 3:+88543075 | MsG0380016845.01.T01:CDS |
| GTCTAGTGGGAGCAGAACAA+AGG | 0.587870 | 3:+88543074 | MsG0380016845.01.T01:CDS |
| GTTGGAAATTCGATAATCGC+CGG | 0.589192 | 3:+88543421 | MsG0380016845.01.T01:CDS |
| AATCTCAAAGATGGTCTAGT+GGG | 0.594623 | 3:+88543061 | MsG0380016845.01.T01:CDS |
| GAAAGAAGAACCAATGACAC+CGG | 0.613342 | 3:-88543440 | None:intergenic |
| GTGGGAGCAGAACAAAGGGT+TGG | 0.616212 | 3:+88543079 | MsG0380016845.01.T01:CDS |
| TAATCTCAAAGATGGTCTAG+TGG | 0.623708 | 3:+88543060 | MsG0380016845.01.T01:CDS |
| AACCACCGAAACGATTACTA+GGG | 0.639616 | 3:+88542769 | MsG0380016845.01.T01:CDS |
| GATCAAGGTGAAAGTAGAAG+CGG | 0.644104 | 3:+88542816 | MsG0380016845.01.T01:CDS |
| GTGCTTAGAGTACATGTTTG+GGG | 0.649442 | 3:+88543588 | MsG0380016845.01.T01:CDS |
| CTAATGAAGGAGACTTCAAG+TGG | 0.653373 | 3:+88543181 | MsG0380016845.01.T01:CDS |
| TTTGGGGCATGTGTGATGAA+AGG | 0.663714 | 3:+88543604 | MsG0380016845.01.T01:CDS |
| AGACCGATAATCCAGTAAAG+CGG | 0.674612 | 3:-88543289 | None:intergenic |
| GGCATGTGTGATGAAAGGAG+AGG | 0.795588 | 3:+88543609 | MsG0380016845.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAGTATCCATTTGAA+GGG | + | Chr3:88543533-88543552 | MsG0380016845.01.T01:CDS | 20.0% |
| !! | TTCAAATGGATACTTAAATA+GGG | - | Chr3:88543533-88543552 | None:intergenic | 20.0% |
| !!! | AAAAAATATTTTCCGTACAA+AGG | + | Chr3:88542973-88542992 | MsG0380016845.01.T01:CDS | 20.0% |
| ! | CTATTTAAGTATCCATTTGA+AGG | + | Chr3:88543532-88543551 | MsG0380016845.01.T01:CDS | 25.0% |
| ! | CTTCAAATGGATACTTAAAT+AGG | - | Chr3:88543534-88543553 | None:intergenic | 25.0% |
| ! | GAATTTCCAACAATGAAATT+AGG | - | Chr3:88543412-88543431 | None:intergenic | 25.0% |
| ! | TTTATTAGAAACCCTTCAAA+TGG | - | Chr3:88543547-88543566 | None:intergenic | 25.0% |
| AGGATGTACTTAAAGAAGAA+GGG | + | Chr3:88543629-88543648 | MsG0380016845.01.T01:CDS | 30.0% | |
| ATCATGAAATTCCAAACTAC+TGG | + | Chr3:88543488-88543507 | MsG0380016845.01.T01:CDS | 30.0% | |
| TCCCTTTCTTGTAGAAAAAT+CGG | - | Chr3:88543157-88543176 | None:intergenic | 30.0% | |
| ! | ATCTTTGGTAATCTCAAAGA+TGG | + | Chr3:88543052-88543071 | MsG0380016845.01.T01:CDS | 30.0% |
| ! | GTAGTTTGGAATTTCATGAT+TGG | - | Chr3:88543488-88543507 | None:intergenic | 30.0% |
| !! | AAACTATGATTCTAGCTCAT+AGG | + | Chr3:88542945-88542964 | MsG0380016845.01.T01:CDS | 30.0% |
| !! | ACCGATTTTTCTACAAGAAA+GGG | + | Chr3:88543153-88543172 | MsG0380016845.01.T01:CDS | 30.0% |
| !! | ATCTTTGAGATTACCAAAGA+TGG | - | Chr3:88543053-88543072 | None:intergenic | 30.0% |
| !! | TGCACTTTTTGTTGCTAATA+TGG | + | Chr3:88543335-88543354 | MsG0380016845.01.T01:CDS | 30.0% |
| !!! | TACCGATTTTTCTACAAGAA+AGG | + | Chr3:88543152-88543171 | MsG0380016845.01.T01:CDS | 30.0% |
| AAAAATCGGTAGAGCTTCAA+TGG | - | Chr3:88543143-88543162 | None:intergenic | 35.0% | |
| AAGTGCTTAGAGTACATGTT+TGG | + | Chr3:88543586-88543605 | MsG0380016845.01.T01:CDS | 35.0% | |
| AATCTCAAAGATGGTCTAGT+GGG | + | Chr3:88543061-88543080 | MsG0380016845.01.T01:CDS | 35.0% | |
| AGAAAGGGAGATTCTAATGA+AGG | + | Chr3:88543168-88543187 | MsG0380016845.01.T01:CDS | 35.0% | |
| AGTAGTAGATGGAAGAATGT+TGG | + | Chr3:88543664-88543683 | MsG0380016845.01.T01:CDS | 35.0% | |
| AGTGCTTAGAGTACATGTTT+GGG | + | Chr3:88543587-88543606 | MsG0380016845.01.T01:CDS | 35.0% | |
| ATGGCTAGTATGAGTAGAAA+TGG | - | Chr3:88543256-88543275 | None:intergenic | 35.0% | |
| ATTGTCCCTAGTAATCGTTT+CGG | - | Chr3:88542777-88542796 | None:intergenic | 35.0% | |
| CTAAAGAAAGGCAATGATCA+AGG | + | Chr3:88542801-88542820 | MsG0380016845.01.T01:CDS | 35.0% | |
| GAGGATGTACTTAAAGAAGA+AGG | + | Chr3:88543628-88543647 | MsG0380016845.01.T01:CDS | 35.0% | |
| GGTTTCTATGTCAAATACCT+TGG | - | Chr3:88542874-88542893 | None:intergenic | 35.0% | |
| GTACTTAAAGAAGAAGGGTA+TGG | + | Chr3:88543634-88543653 | MsG0380016845.01.T01:CDS | 35.0% | |
| GTAGAAATGGCAAGTAAACT+AGG | - | Chr3:88543243-88543262 | None:intergenic | 35.0% | |
| GTAGTAGATGGAAGAATGTT+GGG | + | Chr3:88543665-88543684 | MsG0380016845.01.T01:CDS | 35.0% | |
| TAATCTCAAAGATGGTCTAG+TGG | + | Chr3:88543060-88543079 | MsG0380016845.01.T01:CDS | 35.0% | |
| TAGTAGATGGAAGAATGTTG+GGG | + | Chr3:88543666-88543685 | MsG0380016845.01.T01:CDS | 35.0% | |
| TCAACAACGTTAACATGAAG+AGG | - | Chr3:88542687-88542706 | None:intergenic | 35.0% | |
| TCATCTTATGCTATTGCCAA+TGG | + | Chr3:88543217-88543236 | MsG0380016845.01.T01:CDS | 35.0% | |
| TGAATCCATTGAGACTATTC+AGG | + | Chr3:88542716-88542735 | MsG0380016845.01.T01:CDS | 35.0% | |
| TGACATAGAAACCTGAATGT+CGG | + | Chr3:88542881-88542900 | MsG0380016845.01.T01:intron | 35.0% | |
| TGCATGAAAATCCAGTAGTT+TGG | - | Chr3:88543502-88543521 | None:intergenic | 35.0% | |
| TTGTTCCTGAATAGTCTCAA+TGG | - | Chr3:88542724-88542743 | None:intergenic | 35.0% | |
| ! | ACAGCTATTTCAACAATCCA+AGG | + | Chr3:88542854-88542873 | MsG0380016845.01.T01:intron | 35.0% |
| ! | CTTTTTGTTGCTAATATGGC+TGG | + | Chr3:88543339-88543358 | MsG0380016845.01.T01:CDS | 35.0% |
| !! | ACAATTCAGATGCTGATTTC+AGG | + | Chr3:88543013-88543032 | MsG0380016845.01.T01:CDS | 35.0% |
| AACCACCGAAACGATTACTA+GGG | + | Chr3:88542769-88542788 | MsG0380016845.01.T01:CDS | 40.0% | |
| AGACCGATAATCCAGTAAAG+CGG | - | Chr3:88543292-88543311 | None:intergenic | 40.0% | |
| ATGCAAAGAGCTCCTTTGTA+CGG | - | Chr3:88542988-88543007 | None:intergenic | 40.0% | |
| CAAAGGAGCTCTTTGCATTT+AGG | + | Chr3:88542990-88543009 | MsG0380016845.01.T01:CDS | 40.0% | |
| CGGTCTCAACCAAAATTTCA+CGG | + | Chr3:88543306-88543325 | MsG0380016845.01.T01:CDS | 40.0% | |
| CTAATGAAGGAGACTTCAAG+TGG | + | Chr3:88543181-88543200 | MsG0380016845.01.T01:CDS | 40.0% | |
| CTCTAAGCACTTCTTTGAGT+TGG | - | Chr3:88543578-88543597 | None:intergenic | 40.0% | |
| CTGGTGCCTAATTTCATTGT+TGG | + | Chr3:88543403-88543422 | MsG0380016845.01.T01:CDS | 40.0% | |
| GAAAGAAGAACCAATGACAC+CGG | - | Chr3:88543443-88543462 | None:intergenic | 40.0% | |
| GATCAAGGTGAAAGTAGAAG+CGG | + | Chr3:88542816-88542835 | MsG0380016845.01.T01:CDS | 40.0% | |
| GGGACAATGCTACTAAAGAA+AGG | + | Chr3:88542789-88542808 | MsG0380016845.01.T01:CDS | 40.0% | |
| GGTTCTTCTTTCTTGTTCTC+TGG | + | Chr3:88543451-88543470 | MsG0380016845.01.T01:CDS | 40.0% | |
| GTGCTTAGAGTACATGTTTG+GGG | + | Chr3:88543588-88543607 | MsG0380016845.01.T01:CDS | 40.0% | |
| GTTGGAAATTCGATAATCGC+CGG | + | Chr3:88543421-88543440 | MsG0380016845.01.T01:CDS | 40.0% | |
| TAGAAACCTGAATGTCGGAA+TGG | + | Chr3:88542886-88542905 | MsG0380016845.01.T01:intron | 40.0% | |
| TGAAATCCATTCCGACATTC+AGG | - | Chr3:88542895-88542914 | None:intergenic | 40.0% | |
| ! | CTTAAAGAAGAAGGGTATGG+AGG | + | Chr3:88543637-88543656 | MsG0380016845.01.T01:CDS | 40.0% |
| ! | GCAAAAACGCCGTGAAATTT+TGG | - | Chr3:88543318-88543337 | None:intergenic | 40.0% |
| !! | GGTTTTGTATACCGCAAACT+CGG | + | Chr3:88543360-88543379 | MsG0380016845.01.T01:CDS | 40.0% |
| !!! | CTGATTTCAGGACTGGTTTT+AGG | + | Chr3:88543025-88543044 | MsG0380016845.01.T01:CDS | 40.0% |
| !!! | CTGGTTTTAGGATCCATCTT+TGG | + | Chr3:88543037-88543056 | MsG0380016845.01.T01:CDS | 40.0% |
| AAGCGGCACTGCGAATAAAA+TGG | - | Chr3:88543275-88543294 | None:intergenic | 45.0% | |
| ATGGAAGAATGTTGGGGTGA+TGG | + | Chr3:88543672-88543691 | MsG0380016845.01.T01:CDS | 45.0% | |
| ATGGAGGAGAGAGTAGTAGA+TGG | + | Chr3:88543653-88543672 | MsG0380016845.01.T01:CDS | 45.0% | |
| GAACCACCGAAACGATTACT+AGG | + | Chr3:88542768-88542787 | MsG0380016845.01.T01:CDS | 45.0% | |
| TCTAGTGGGAGCAGAACAAA+GGG | + | Chr3:88543075-88543094 | MsG0380016845.01.T01:CDS | 45.0% | |
| TGGCAAGTAAACTAGGCCAT+TGG | - | Chr3:88543236-88543255 | None:intergenic | 45.0% | |
| ! | TTTGGGGCATGTGTGATGAA+AGG | + | Chr3:88543604-88543623 | MsG0380016845.01.T01:CDS | 45.0% |
| !! | GTGCCGCTTTACTGGATTAT+CGG | + | Chr3:88543286-88543305 | MsG0380016845.01.T01:CDS | 45.0% |
| !! | TCAGATGCTGATTTCAGGAC+TGG | + | Chr3:88543018-88543037 | MsG0380016845.01.T01:CDS | 45.0% |
| ACAGACCACAACCGAGTTTG+CGG | - | Chr3:88543374-88543393 | None:intergenic | 50.0% | |
| GGCATGTGTGATGAAAGGAG+AGG | + | Chr3:88543609-88543628 | MsG0380016845.01.T01:CDS | 50.0% | |
| GTATACCGCAAACTCGGTTG+TGG | + | Chr3:88543366-88543385 | MsG0380016845.01.T01:CDS | 50.0% | |
| GTCCCTAGTAATCGTTTCGG+TGG | - | Chr3:88542774-88542793 | None:intergenic | 50.0% | |
| GTCTAGTGGGAGCAGAACAA+AGG | + | Chr3:88543074-88543093 | MsG0380016845.01.T01:CDS | 50.0% | |
| TGTGGTCTGTTTCAGTGCTC+TGG | + | Chr3:88543384-88543403 | MsG0380016845.01.T01:CDS | 50.0% | |
| !! | TATTCGCAGTGCCGCTTTAC+TGG | + | Chr3:88543278-88543297 | MsG0380016845.01.T01:CDS | 50.0% |
| !! | TCGATAATCGCCGGTGTCAT+TGG | + | Chr3:88543430-88543449 | MsG0380016845.01.T01:CDS | 50.0% |
| GTGGGAGCAGAACAAAGGGT+TGG | + | Chr3:88543079-88543098 | MsG0380016845.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 88542669 | 88543771 | 88542669 | ID=MsG0380016845.01;Name=MsG0380016845.01 |
| Chr3 | mRNA | 88542669 | 88543771 | 88542669 | ID=MsG0380016845.01.T01;Parent=MsG0380016845.01;Name=MsG0380016845.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|0|0|2|0|340 |
| Chr3 | exon | 88542669 | 88542837 | 88542669 | ID=MsG0380016845.01.T01:exon:25011;Parent=MsG0380016845.01.T01 |
| Chr3 | exon | 88542918 | 88543771 | 88542918 | ID=MsG0380016845.01.T01:exon:25012;Parent=MsG0380016845.01.T01 |
| Chr3 | CDS | 88542669 | 88542837 | 88542669 | ID=MsG0380016845.01.T01:cds;Parent=MsG0380016845.01.T01 |
| Chr3 | CDS | 88542918 | 88543771 | 88542918 | ID=MsG0380016845.01.T01:cds;Parent=MsG0380016845.01.T01 |
| Gene Sequence |
| Protein sequence |
