Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047081.01.T01 | XP_003609709.2 | 98.75 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 1.62E-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047081.01.T01 | P17642 | 56.875 | 160 | 64 | 3 | 1 | 160 | 1 | 155 | 2.71E-61 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047081.01.T01 | G7JLL1 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 7.75e-112 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0880047081.01 | 0.811854 | 5.685023e-51 | 3.557892e-48 |
| MsG0080048348.01 | MsG0880047081.01 | 0.803027 | 4.239799e-49 | 2.108205e-46 |
| MsG0080048699.01 | MsG0880047081.01 | -0.812577 | 3.953923e-51 | 2.523196e-48 |
| MsG0180000019.01 | MsG0880047081.01 | 0.888578 | 5.212220e-73 | 4.061495e-69 |
| MsG0180000222.01 | MsG0880047081.01 | 0.815479 | 9.050522e-52 | 6.247411e-49 |
| MsG0180000337.01 | MsG0880047081.01 | 0.857985 | 1.123765e-62 | 2.824953e-59 |
| MsG0180001050.01 | MsG0880047081.01 | 0.875784 | 2.345041e-68 | 1.109310e-64 |
| MsG0180001053.01 | MsG0880047081.01 | 0.832520 | 9.020557e-56 | 1.010687e-52 |
| MsG0880044305.01 | MsG0880047081.01 | 0.800276 | 1.555134e-48 | 7.211446e-46 |
| MsG0880044669.01 | MsG0880047081.01 | 0.885480 | 7.844112e-72 | 5.392118e-68 |
| MsG0880045275.01 | MsG0880047081.01 | 0.809471 | 1.861199e-50 | 1.093716e-47 |
| MsG0880045277.01 | MsG0880047081.01 | 0.864764 | 9.611409e-65 | 3.052662e-61 |
| MsG0880045441.01 | MsG0880047081.01 | 0.856593 | 2.897344e-62 | 6.951428e-59 |
| MsG0880045861.01 | MsG0880047081.01 | 0.813255 | 2.807736e-51 | 1.824366e-48 |
| MsG0880046975.01 | MsG0880047081.01 | 0.810674 | 1.025188e-50 | 6.218855e-48 |
| MsG0880047081.01 | MsG0880047486.01 | 0.841718 | 4.009623e-58 | 5.942521e-55 |
| MsG0880047081.01 | MsG0880047491.01 | 0.839371 | 1.648923e-57 | 2.272576e-54 |
| MsG0880047081.01 | MsG0880047531.01 | 0.822435 | 2.372189e-53 | 1.985469e-50 |
| MsG0180003241.01 | MsG0880047081.01 | 0.816002 | 6.921354e-52 | 4.846201e-49 |
| MsG0180004110.01 | MsG0880047081.01 | 0.845011 | 5.297819e-59 | 8.709032e-56 |
| MsG0180004181.01 | MsG0880047081.01 | 0.812012 | 5.251852e-51 | 3.300904e-48 |
| MsG0180004562.01 | MsG0880047081.01 | 0.862587 | 4.561567e-64 | 1.342807e-60 |
| MsG0180004752.01 | MsG0880047081.01 | 0.822499 | 2.292492e-53 | 1.922224e-50 |
| MsG0180005357.01 | MsG0880047081.01 | 0.822213 | 2.672241e-53 | 2.222259e-50 |
| MsG0180005996.01 | MsG0880047081.01 | 0.837420 | 5.252044e-57 | 6.818403e-54 |
| MsG0180005997.01 | MsG0880047081.01 | 0.805988 | 1.022998e-49 | 5.489462e-47 |
| MsG0180006012.01 | MsG0880047081.01 | 0.840371 | 9.055186e-58 | 1.287183e-54 |
| MsG0780040480.01 | MsG0880047081.01 | 0.845387 | 4.191783e-59 | 6.974140e-56 |
| MsG0780041556.01 | MsG0880047081.01 | 0.824336 | 8.529313e-54 | 7.532505e-51 |
| MsG0880041985.01 | MsG0880047081.01 | 0.856822 | 2.480182e-62 | 5.994133e-59 |
| MsG0880042320.01 | MsG0880047081.01 | 0.829950 | 3.863409e-55 | 4.013391e-52 |
| MsG0880042368.01 | MsG0880047081.01 | 0.838311 | 3.101752e-57 | 4.137955e-54 |
| MsG0880042843.01 | MsG0880047081.01 | 0.820383 | 7.061225e-53 | 5.579043e-50 |
| MsG0880042976.01 | MsG0880047081.01 | 0.809652 | 1.701840e-50 | 1.004952e-47 |
| MsG0880043094.01 | MsG0880047081.01 | 0.825131 | 5.539991e-54 | 5.005979e-51 |
| MsG0880043285.01 | MsG0880047081.01 | 0.829092 | 6.243877e-55 | 6.325898e-52 |
| MsG0880043286.01 | MsG0880047081.01 | 0.817989 | 2.477383e-52 | 1.831577e-49 |
| MsG0880043715.01 | MsG0880047081.01 | 0.836525 | 8.894511e-57 | 1.123750e-53 |
| MsG0880043744.01 | MsG0880047081.01 | 0.812867 | 3.415800e-51 | 2.196327e-48 |
| MsG0880043824.01 | MsG0880047081.01 | 0.829050 | 6.393847e-55 | 6.469084e-52 |
| MsG0880043828.01 | MsG0880047081.01 | 0.807057 | 6.087160e-50 | 3.357020e-47 |
| MsG0280010695.01 | MsG0880047081.01 | -0.804531 | 2.066100e-49 | 1.067789e-46 |
| MsG0280011041.01 | MsG0880047081.01 | 0.828316 | 9.621546e-55 | 9.528959e-52 |
| MsG0280011042.01 | MsG0880047081.01 | 0.851989 | 6.195062e-61 | 1.275832e-57 |
| MsG0280011053.01 | MsG0880047081.01 | 0.879327 | 1.364093e-69 | 7.365401e-66 |
| MsG0280011152.01 | MsG0880047081.01 | 0.864937 | 8.485211e-65 | 2.711414e-61 |
| MsG0280011288.01 | MsG0880047081.01 | 0.815837 | 7.535000e-52 | 5.251816e-49 |
| MsG0280011349.01 | MsG0880047081.01 | 0.806672 | 7.341403e-50 | 4.008444e-47 |
| MsG0280011350.01 | MsG0880047081.01 | 0.813062 | 3.095152e-51 | 2.000637e-48 |
| MsG0280011473.01 | MsG0880047081.01 | 0.827935 | 1.188748e-54 | 1.164335e-51 |
| MsG0380011613.01 | MsG0880047081.01 | 0.848095 | 7.625645e-60 | 1.383780e-56 |
| MsG0380013300.01 | MsG0880047081.01 | 0.823280 | 1.507865e-53 | 1.292526e-50 |
| MsG0380013951.01 | MsG0880047081.01 | -0.816492 | 5.377401e-52 | 3.815793e-49 |
| MsG0380013968.01 | MsG0880047081.01 | -0.820795 | 5.678371e-53 | 4.537744e-50 |
| MsG0380014018.01 | MsG0880047081.01 | -0.809469 | 1.863541e-50 | 1.095026e-47 |
| MsG0380014920.01 | MsG0880047081.01 | 0.870873 | 1.050043e-66 | 4.150063e-63 |
| MsG0680031429.01 | MsG0880047081.01 | 0.831950 | 1.248403e-55 | 1.375552e-52 |
| MsG0680035496.01 | MsG0880047081.01 | 0.843639 | 1.238449e-58 | 1.950144e-55 |
| MsG0480018500.01 | MsG0880047081.01 | 0.845389 | 4.187242e-59 | 6.966977e-56 |
| MsG0480018807.01 | MsG0880047081.01 | 0.809255 | 2.070924e-50 | 1.209994e-47 |
| MsG0480018904.01 | MsG0880047081.01 | 0.881455 | 2.365950e-70 | 1.387206e-66 |
| MsG0480019038.01 | MsG0880047081.01 | 0.817538 | 3.131520e-52 | 2.286787e-49 |
| MsG0480019295.01 | MsG0880047081.01 | 0.816813 | 4.556985e-52 | 3.262275e-49 |
| MsG0480019880.01 | MsG0880047081.01 | 0.804291 | 2.318476e-49 | 1.190904e-46 |
| MsG0480020428.01 | MsG0880047081.01 | 0.825119 | 5.577887e-54 | 5.038361e-51 |
| MsG0480020444.01 | MsG0880047081.01 | 0.843551 | 1.306953e-58 | 2.052182e-55 |
| MsG0480021135.01 | MsG0880047081.01 | 0.819423 | 1.170583e-52 | 9.004297e-50 |
| MsG0480022125.01 | MsG0880047081.01 | 0.883982 | 2.827538e-71 | 1.832570e-67 |
| MsG0480022507.01 | MsG0880047081.01 | 0.811420 | 7.063780e-51 | 4.370488e-48 |
| MsG0480022508.01 | MsG0880047081.01 | 0.820509 | 6.606878e-53 | 5.237828e-50 |
| MsG0480022736.01 | MsG0880047081.01 | 0.805201 | 1.496825e-49 | 7.870870e-47 |
| MsG0480022760.01 | MsG0880047081.01 | 0.838394 | 2.952012e-57 | 3.948559e-54 |
| MsG0480023280.01 | MsG0880047081.01 | 0.807340 | 5.301734e-50 | 2.945505e-47 |
| MsG0480023318.01 | MsG0880047081.01 | 0.841615 | 4.267775e-58 | 6.305927e-55 |
| MsG0480023417.01 | MsG0880047081.01 | 0.812756 | 3.612764e-51 | 2.316313e-48 |
| MsG0480023947.01 | MsG0880047081.01 | 0.858091 | 1.045173e-62 | 2.636689e-59 |
| MsG0580024154.01 | MsG0880047081.01 | 0.842123 | 3.133648e-58 | 4.704524e-55 |
| MsG0580025876.01 | MsG0880047081.01 | 0.813189 | 2.902453e-51 | 1.882535e-48 |
| MsG0380016644.01 | MsG0880047081.01 | 0.819986 | 8.703751e-53 | 6.801354e-50 |
| MsG0380017007.01 | MsG0880047081.01 | -0.800139 | 1.658017e-48 | 7.661895e-46 |
| MsG0380017020.01 | MsG0880047081.01 | 0.853451 | 2.369513e-61 | 5.122103e-58 |
| MsG0380017158.01 | MsG0880047081.01 | 0.825923 | 3.597504e-54 | 3.324795e-51 |
| MsG0580027073.01 | MsG0880047081.01 | 0.855272 | 7.050821e-62 | 1.618864e-58 |
| MsG0580027227.01 | MsG0880047081.01 | 0.872082 | 4.180343e-67 | 1.726127e-63 |
| MsG0580027733.01 | MsG0880047081.01 | 0.809537 | 1.802075e-50 | 1.060849e-47 |
| MsG0580028051.01 | MsG0880047081.01 | 0.830999 | 2.140077e-55 | 2.292343e-52 |
| MsG0580028355.01 | MsG0880047081.01 | 0.819100 | 1.386662e-52 | 1.057131e-49 |
| MsG0580028758.01 | MsG0880047081.01 | 0.810959 | 8.892164e-51 | 5.435712e-48 |
| MsG0580028999.01 | MsG0880047081.01 | 0.834441 | 2.992032e-56 | 3.551123e-53 |
| MsG0580029555.01 | MsG0880047081.01 | 0.802290 | 6.018760e-49 | 2.937267e-46 |
| MsG0580029583.01 | MsG0880047081.01 | 0.853470 | 2.339268e-61 | 5.060084e-58 |
| MsG0580029906.01 | MsG0880047081.01 | 0.815829 | 7.563437e-52 | 5.270642e-49 |
| MsG0580029930.01 | MsG0880047081.01 | 0.885190 | 1.006728e-71 | 6.843805e-68 |
| MsG0280006704.01 | MsG0880047081.01 | 0.816074 | 6.669618e-52 | 4.679401e-49 |
| MsG0280007272.01 | MsG0880047081.01 | 0.827252 | 1.733151e-54 | 1.664256e-51 |
| MsG0280007369.01 | MsG0880047081.01 | 0.877193 | 7.644816e-69 | 3.810008e-65 |
| MsG0280007391.01 | MsG0880047081.01 | 0.855871 | 4.715094e-62 | 1.104345e-58 |
| MsG0280007751.01 | MsG0880047081.01 | 0.862338 | 5.437901e-64 | 1.586869e-60 |
| MsG0280007759.01 | MsG0880047081.01 | 0.815905 | 7.275569e-52 | 5.080475e-49 |
| MsG0280007760.01 | MsG0880047081.01 | 0.813162 | 2.943453e-51 | 1.907653e-48 |
| MsG0280007840.01 | MsG0880047081.01 | 0.800297 | 1.540064e-48 | 7.145505e-46 |
| MsG0280009394.01 | MsG0880047081.01 | 0.882605 | 9.055717e-71 | 5.550990e-67 |
| MsG0280009838.01 | MsG0880047081.01 | 0.822013 | 2.972043e-53 | 2.457483e-50 |
| MsG0280009858.01 | MsG0880047081.01 | 0.815215 | 1.036310e-51 | 7.100639e-49 |
| MsG0280009971.01 | MsG0880047081.01 | 0.838758 | 2.377531e-57 | 3.215682e-54 |
| MsG0280010145.01 | MsG0880047081.01 | -0.807817 | 4.200013e-50 | 2.362492e-47 |
| MsG0680035741.01 | MsG0880047081.01 | 0.837727 | 4.382155e-57 | 5.743802e-54 |
| MsG0780037258.01 | MsG0880047081.01 | 0.829495 | 4.984887e-55 | 5.110344e-52 |
| MsG0780038123.01 | MsG0880047081.01 | 0.858306 | 9.018323e-63 | 2.291601e-59 |
| MsG0780038135.01 | MsG0880047081.01 | 0.814865 | 1.239361e-51 | 8.411920e-49 |
| MsG0780038515.01 | MsG0880047081.01 | 0.831409 | 1.696456e-55 | 1.839296e-52 |
| MsG0780039334.01 | MsG0880047081.01 | 0.831586 | 1.534475e-55 | 1.672658e-52 |
| MsG0780039472.01 | MsG0880047081.01 | 0.826324 | 2.887135e-54 | 2.698856e-51 |
| MsG0780039877.01 | MsG0880047081.01 | 0.821773 | 3.378324e-53 | 2.774569e-50 |
| MsG0780040060.01 | MsG0880047081.01 | 0.810697 | 1.013374e-50 | 6.151045e-48 |
| MsG0780040144.01 | MsG0880047081.01 | 0.803572 | 3.270507e-49 | 1.649276e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047081.01.T01 | MTR_4g120760 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 1.96e-115 | 323 |
| MsG0880047081.01.T01 | MTR_4g120760 | 98.125 | 160 | 3 | 0 | 1 | 160 | 1 | 160 | 7.25e-115 | 322 |
| MsG0880047081.01.T01 | MTR_2g435310 | 74.843 | 159 | 40 | 0 | 1 | 159 | 1 | 159 | 1.11e-89 | 258 |
| MsG0880047081.01.T01 | MTR_2g035100 | 41.026 | 156 | 91 | 1 | 1 | 156 | 1 | 155 | 6.36e-38 | 127 |
| MsG0880047081.01.T01 | MTR_2g035105 | 39.744 | 156 | 93 | 1 | 1 | 156 | 1 | 155 | 1.17e-36 | 124 |
| MsG0880047081.01.T01 | MTR_2g035150 | 39.744 | 156 | 93 | 1 | 1 | 156 | 1 | 155 | 5.47e-36 | 122 |
| MsG0880047081.01.T01 | MTR_2g035120 | 38.217 | 157 | 96 | 1 | 1 | 157 | 1 | 156 | 1.45e-35 | 121 |
| MsG0880047081.01.T01 | MTR_2g035130 | 38.217 | 157 | 96 | 1 | 1 | 157 | 1 | 156 | 4.82e-35 | 120 |
| MsG0880047081.01.T01 | MTR_6g033450 | 38.217 | 157 | 96 | 1 | 1 | 157 | 1 | 156 | 4.08e-34 | 117 |
| MsG0880047081.01.T01 | MTR_4g120970 | 38.217 | 157 | 96 | 1 | 1 | 157 | 1 | 156 | 4.08e-34 | 117 |
| MsG0880047081.01.T01 | MTR_2g035210 | 34.395 | 157 | 102 | 1 | 1 | 157 | 1 | 156 | 4.11e-31 | 110 |
| MsG0880047081.01.T01 | MTR_2g035220 | 34.395 | 157 | 102 | 1 | 1 | 157 | 1 | 156 | 8.77e-31 | 109 |
| MsG0880047081.01.T01 | MTR_2g035320 | 33.974 | 156 | 102 | 1 | 1 | 156 | 1 | 155 | 1.37e-29 | 106 |
| MsG0880047081.01.T01 | MTR_2g035170 | 33.333 | 156 | 103 | 1 | 1 | 156 | 1 | 155 | 3.23e-29 | 105 |
| MsG0880047081.01.T01 | MTR_2g035190 | 33.121 | 157 | 104 | 1 | 1 | 157 | 1 | 156 | 1.17e-28 | 103 |
| MsG0880047081.01.T01 | MTR_4g120950 | 36.709 | 158 | 96 | 3 | 1 | 156 | 1 | 156 | 1.43e-27 | 101 |
| MsG0880047081.01.T01 | MTR_2g035320 | 31.111 | 90 | 62 | 0 | 67 | 156 | 31 | 120 | 4.92e-11 | 57.4 |
| MsG0880047081.01.T01 | MTR_3g055130 | 29.221 | 154 | 101 | 3 | 6 | 155 | 5 | 154 | 5.18e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAACTGTGGTAAGAGCTT+TGG | 0.325990 | 8:+81689639 | None:intergenic |
| TGATTGAAGGGGATCCATTA+GGG | 0.331913 | 8:-81688899 | MsG0880047081.01.T01:CDS |
| CAAACTGTGGTAAGAGCTTT+GGG | 0.338115 | 8:+81689640 | None:intergenic |
| ATGATTGAAGGGGATCCATT+AGG | 0.378730 | 8:-81688900 | MsG0880047081.01.T01:CDS |
| ATTGAAGGAGATGGAGGAGC+TGG | 0.382904 | 8:-81689600 | MsG0880047081.01.T01:CDS |
| GATTCAAGCTTGTCCCCTAA+TGG | 0.397124 | 8:+81688885 | None:intergenic |
| GCTTGAATCTATTGCTTATG+AGG | 0.397842 | 8:-81688871 | MsG0880047081.01.T01:CDS |
| TGGAGGTTGTCTATGTAAAA+TGG | 0.399526 | 8:-81688826 | MsG0880047081.01.T01:CDS |
| AGGAAGATGTAAAGGAAGGA+AGG | 0.431562 | 8:-81688764 | MsG0880047081.01.T01:CDS |
| TGCAAATACACTATGATTGA+AGG | 0.436438 | 8:-81688912 | MsG0880047081.01.T01:CDS |
| GCAAGCAGTTACAAGACTAT+TGG | 0.438215 | 8:-81688804 | MsG0880047081.01.T01:CDS |
| TGCTTATGAGGTGAAGTTTG+AGG | 0.442957 | 8:-81688859 | MsG0880047081.01.T01:CDS |
| AAAGATGTTAGTATAATTGA+AGG | 0.444869 | 8:-81689615 | MsG0880047081.01.T01:CDS |
| AAAGATTGATGTGCTTGATA+AGG | 0.454495 | 8:-81688946 | MsG0880047081.01.T01:CDS |
| ACGCGATGGTGCAACGGTTG+AGG | 0.456171 | 8:+81689701 | None:intergenic |
| AAGTTTGAGGCTACAAATGA+TGG | 0.474637 | 8:-81688846 | MsG0880047081.01.T01:CDS |
| GTTAGTATAATTGAAGGAGA+TGG | 0.504523 | 8:-81689609 | MsG0880047081.01.T01:CDS |
| TGTTAAAGAGGAAGATGTAA+AGG | 0.506693 | 8:-81688772 | MsG0880047081.01.T01:CDS |
| GAAGGAAGGGAAAGTACCAT+TGG | 0.512113 | 8:-81688750 | MsG0880047081.01.T01:CDS |
| CATTGGAATTTACAAAGTTG+TGG | 0.512917 | 8:-81688733 | MsG0880047081.01.T01:CDS |
| GGAAGATGTAAAGGAAGGAA+GGG | 0.521833 | 8:-81688763 | MsG0880047081.01.T01:CDS |
| GAACAAGTCAACTTCAATGA+AGG | 0.526221 | 8:-81689570 | MsG0880047081.01.T01:intron |
| GCAAATACACTATGATTGAA+GGG | 0.531266 | 8:-81688911 | MsG0880047081.01.T01:CDS |
| AGTTGTGGAGTCATATCTGC+TGG | 0.538493 | 8:-81688718 | MsG0880047081.01.T01:CDS |
| AAAGAGGAAGATGTAAAGGA+AGG | 0.539687 | 8:-81688768 | MsG0880047081.01.T01:CDS |
| CACAACTTTGTAAATTCCAA+TGG | 0.553300 | 8:+81688734 | None:intergenic |
| AGTATAATTGAAGGAGATGG+AGG | 0.558565 | 8:-81689606 | MsG0880047081.01.T01:CDS |
| TTTGTTTCAGATATTTGAAG+GGG | 0.583251 | 8:+81688967 | None:intergenic |
| TGAGGAATACTCATGTGTAA+AGG | 0.583283 | 8:+81689719 | None:intergenic |
| CAAATACACTATGATTGAAG+GGG | 0.588174 | 8:-81688910 | MsG0880047081.01.T01:CDS |
| GAACATACGCGATGGTGCAA+CGG | 0.605469 | 8:+81689695 | None:intergenic |
| CTAACATCTTTAACAAACTG+TGG | 0.611198 | 8:+81689627 | None:intergenic |
| TTTGAGGCTACAAATGATGG+AGG | 0.641637 | 8:-81688843 | MsG0880047081.01.T01:CDS |
| GATTGAAGGGGATCCATTAG+GGG | 0.664801 | 8:-81688898 | MsG0880047081.01.T01:CDS |
| AAAGCTGTGAACATACGCGA+TGG | 0.674937 | 8:+81689687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTTAATAGTTTTTT+TGG | + | Chr8:81688979-81688998 | None:intergenic | 10.0% |
| !!! | TAAGTTTTTATAAAAAAAAG+TGG | + | Chr8:81689144-81689163 | None:intergenic | 10.0% |
| !! | CTAAGATAAAATTTCTATTT+AGG | + | Chr8:81689083-81689102 | None:intergenic | 15.0% |
| !! | AAAGATGTTAGTATAATTGA+AGG | - | Chr8:81688812-81688831 | MsG0880047081.01.T01:CDS | 20.0% |
| !! | AATTCTTTAACCAATATTTC+GGG | + | Chr8:81689060-81689079 | None:intergenic | 20.0% |
| !! | GAATTCTTTAACCAATATTT+CGG | + | Chr8:81689061-81689080 | None:intergenic | 20.0% |
| !!! | AAAATATTTTTGGATTGCTT+CGG | - | Chr8:81689347-81689366 | MsG0880047081.01.T01:intron | 20.0% |
| !!! | TTTTGTTTCAGATATTTGAA+GGG | + | Chr8:81689464-81689483 | None:intergenic | 20.0% |
| ! | ATTCAAGAAATAAACTTCTC+TGG | + | Chr8:81689404-81689423 | None:intergenic | 25.0% |
| ! | ATTCTTTAACCAATATTTCG+GGG | + | Chr8:81689059-81689078 | None:intergenic | 25.0% |
| ! | TTTGTTTCAGATATTTGAAG+GGG | + | Chr8:81689463-81689482 | None:intergenic | 25.0% |
| !! | GTATTTCTATTATGATATGC+AGG | - | Chr8:81689434-81689453 | MsG0880047081.01.T01:intron | 25.0% |
| !!! | CTTTTGTTTCAGATATTTGA+AGG | + | Chr8:81689465-81689484 | None:intergenic | 25.0% |
| AAAGATTGATGTGCTTGATA+AGG | - | Chr8:81689481-81689500 | MsG0880047081.01.T01:intron | 30.0% | |
| AAATGTTTAACCAATGTCGT+TGG | - | Chr8:81689172-81689191 | MsG0880047081.01.T01:intron | 30.0% | |
| AATGTTTAACCAATGTCGTT+GGG | - | Chr8:81689173-81689192 | MsG0880047081.01.T01:intron | 30.0% | |
| CAAATACACTATGATTGAAG+GGG | - | Chr8:81689517-81689536 | MsG0880047081.01.T01:intron | 30.0% | |
| CACAACTTTGTAAATTCCAA+TGG | + | Chr8:81689696-81689715 | None:intergenic | 30.0% | |
| CATTGGAATTTACAAAGTTG+TGG | - | Chr8:81689694-81689713 | MsG0880047081.01.T01:CDS | 30.0% | |
| CTAACATCTTTAACAAACTG+TGG | + | Chr8:81688803-81688822 | None:intergenic | 30.0% | |
| GCAAATACACTATGATTGAA+GGG | - | Chr8:81689516-81689535 | MsG0880047081.01.T01:intron | 30.0% | |
| GTTAGTATAATTGAAGGAGA+TGG | - | Chr8:81688818-81688837 | MsG0880047081.01.T01:CDS | 30.0% | |
| TGCAAATACACTATGATTGA+AGG | - | Chr8:81689515-81689534 | MsG0880047081.01.T01:intron | 30.0% | |
| TGTTAAAGAGGAAGATGTAA+AGG | - | Chr8:81689655-81689674 | MsG0880047081.01.T01:CDS | 30.0% | |
| !! | TGGAGATTTTGATGTTAAAG+AGG | - | Chr8:81689643-81689662 | MsG0880047081.01.T01:CDS | 30.0% |
| AAAGAGGAAGATGTAAAGGA+AGG | - | Chr8:81689659-81689678 | MsG0880047081.01.T01:CDS | 35.0% | |
| AGTATAATTGAAGGAGATGG+AGG | - | Chr8:81688821-81688840 | MsG0880047081.01.T01:CDS | 35.0% | |
| ATGTTTAACCAATGTCGTTG+GGG | - | Chr8:81689174-81689193 | MsG0880047081.01.T01:intron | 35.0% | |
| GAACAAGTCAACTTCAATGA+AGG | - | Chr8:81688857-81688876 | MsG0880047081.01.T01:CDS | 35.0% | |
| GCTTGAATCTATTGCTTATG+AGG | - | Chr8:81689556-81689575 | MsG0880047081.01.T01:intron | 35.0% | |
| TGAGGAATACTCATGTGTAA+AGG | + | Chr8:81688711-81688730 | None:intergenic | 35.0% | |
| TGGAGGTTGTCTATGTAAAA+TGG | - | Chr8:81689601-81689620 | MsG0880047081.01.T01:CDS | 35.0% | |
| ! | AAGTTTGAGGCTACAAATGA+TGG | - | Chr8:81689581-81689600 | MsG0880047081.01.T01:CDS | 35.0% |
| ! | TCTAAGACCTCAATATGTGT+TGG | + | Chr8:81688919-81688938 | None:intergenic | 35.0% |
| !!! | ATATTTTTGGATTGCTTCGG+TGG | - | Chr8:81689350-81689369 | MsG0880047081.01.T01:intron | 35.0% |
| ACAAACTGTGGTAAGAGCTT+TGG | + | Chr8:81688791-81688810 | None:intergenic | 40.0% | |
| AGGAAGATGTAAAGGAAGGA+AGG | - | Chr8:81689663-81689682 | MsG0880047081.01.T01:CDS | 40.0% | |
| AGTCGATCCAACACATATTG+AGG | - | Chr8:81688909-81688928 | MsG0880047081.01.T01:CDS | 40.0% | |
| ATGATTGAAGGGGATCCATT+AGG | - | Chr8:81689527-81689546 | MsG0880047081.01.T01:intron | 40.0% | |
| CAAACTGTGGTAAGAGCTTT+GGG | + | Chr8:81688790-81688809 | None:intergenic | 40.0% | |
| GCAAGCAGTTACAAGACTAT+TGG | - | Chr8:81689623-81689642 | MsG0880047081.01.T01:CDS | 40.0% | |
| GGAAGATGTAAAGGAAGGAA+GGG | - | Chr8:81689664-81689683 | MsG0880047081.01.T01:CDS | 40.0% | |
| TAATCACTGCCCCGAAATAT+TGG | - | Chr8:81689047-81689066 | MsG0880047081.01.T01:intron | 40.0% | |
| TGATTGAAGGGGATCCATTA+GGG | - | Chr8:81689528-81689547 | MsG0880047081.01.T01:intron | 40.0% | |
| TGCTTATGAGGTGAAGTTTG+AGG | - | Chr8:81689568-81689587 | MsG0880047081.01.T01:intron | 40.0% | |
| TGTTTAACCAATGTCGTTGG+GGG | - | Chr8:81689175-81689194 | MsG0880047081.01.T01:intron | 40.0% | |
| TTTATCTCATGTCGACCCAA+TGG | + | Chr8:81689381-81689400 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTACAAATGATGG+AGG | - | Chr8:81689584-81689603 | MsG0880047081.01.T01:CDS | 40.0% |
| AAAGCTGTGAACATACGCGA+TGG | + | Chr8:81688743-81688762 | None:intergenic | 45.0% | |
| AGTTGTGGAGTCATATCTGC+TGG | - | Chr8:81689709-81689728 | MsG0880047081.01.T01:CDS | 45.0% | |
| GATTCAAGCTTGTCCCCTAA+TGG | + | Chr8:81689545-81689564 | None:intergenic | 45.0% | |
| GATTGAAGGGGATCCATTAG+GGG | - | Chr8:81689529-81689548 | MsG0880047081.01.T01:intron | 45.0% | |
| !! | GAAGGAAGGGAAAGTACCAT+TGG | - | Chr8:81689677-81689696 | MsG0880047081.01.T01:CDS | 45.0% |
| !! | GCTTCGGTGGTTTTACCATT+GGG | - | Chr8:81689363-81689382 | MsG0880047081.01.T01:intron | 45.0% |
| !! | TGCTTCGGTGGTTTTACCAT+TGG | - | Chr8:81689362-81689381 | MsG0880047081.01.T01:intron | 45.0% |
| !!! | AAATATTGATAAAATATTTT+TGG | - | Chr8:81689337-81689356 | MsG0880047081.01.T01:intron | 5.0% |
| AAAGAGTCCCCCAACGACAT+TGG | + | Chr8:81689185-81689204 | None:intergenic | 50.0% | |
| ATTGAAGGAGATGGAGGAGC+TGG | - | Chr8:81688827-81688846 | MsG0880047081.01.T01:CDS | 50.0% | |
| GAACATACGCGATGGTGCAA+CGG | + | Chr8:81688735-81688754 | None:intergenic | 50.0% | |
| ACGCGATGGTGCAACGGTTG+AGG | + | Chr8:81688729-81688748 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 81688695 | 81689754 | 81688695 | ID=MsG0880047081.01;Name=MsG0880047081.01 |
| Chr8 | mRNA | 81688695 | 81689754 | 81688695 | ID=MsG0880047081.01.T01;Parent=MsG0880047081.01;Name=MsG0880047081.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|160 |
| Chr8 | exon | 81689571 | 81689754 | 81689571 | ID=MsG0880047081.01.T01:exon:35161;Parent=MsG0880047081.01.T01 |
| Chr8 | exon | 81688695 | 81688993 | 81688695 | ID=MsG0880047081.01.T01:exon:35160;Parent=MsG0880047081.01.T01 |
| Chr8 | CDS | 81689571 | 81689754 | 81689571 | ID=MsG0880047081.01.T01:cds;Parent=MsG0880047081.01.T01 |
| Chr8 | CDS | 81688695 | 81688993 | 81688695 | ID=MsG0880047081.01.T01:cds;Parent=MsG0880047081.01.T01 |
| Gene Sequence |
| Protein sequence |
