AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022508.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022508.01.T01 MTR_4g091200 86.364 528 48 2 1 504 1 528 0.0 931
MsG0480022508.01.T01 MTR_6g017205 84.906 530 56 2 1 506 1 530 0.0 910
MsG0480022508.01.T01 MTR_4g057990 76.850 527 91 5 4 503 1 523 0.0 805
MsG0480022508.01.T01 MTR_4g091190 72.642 530 115 4 1 502 1 528 0.0 773
MsG0480022508.01.T01 MTR_4g088355 73.031 508 107 3 26 503 27 534 0.0 753
MsG0480022508.01.T01 MTR_2g023590 73.150 473 101 3 59 507 1 471 0.0 703
MsG0480022508.01.T01 MTR_4g091170 69.063 459 100 2 68 502 102 542 0.0 656
MsG0480022508.01.T01 MTR_4g091150 57.249 538 192 6 1 500 1 538 0.0 595
MsG0480022508.01.T01 MTR_2g031560 49.701 501 220 4 31 501 24 522 1.15e-178 514
MsG0480022508.01.T01 MTR_2g031590 48.560 521 225 9 17 501 18 531 2.56e-175 504
MsG0480022508.01.T01 MTR_4g094498 48.387 527 235 7 8 501 11 533 1.22e-168 488
MsG0480022508.01.T01 MTR_4g094488 47.850 535 239 9 6 502 5 537 4.47e-160 466
MsG0480022508.01.T01 MTR_4g094520 46.816 534 244 11 2 501 4 531 1.80e-159 464
MsG0480022508.01.T01 MTR_4g094478 47.448 529 242 8 8 501 7 534 6.34e-159 463
MsG0480022508.01.T01 MTR_2g031390 46.967 511 234 8 23 500 21 527 9.59e-159 462
MsG0480022508.01.T01 MTR_4g094495 48.936 517 226 7 22 502 26 540 3.34e-158 461
MsG0480022508.01.T01 MTR_4g094492 44.528 530 257 7 8 501 7 535 2.55e-155 453
MsG0480022508.01.T01 MTR_4g094480 47.170 530 243 8 9 502 7 535 2.26e-154 451
MsG0480022508.01.T01 MTR_3g009820 43.462 520 260 9 9 500 7 520 1.90e-151 443
MsG0480022508.01.T01 MTR_2g031490 46.845 523 237 11 14 500 19 536 2.87e-151 443
MsG0480022508.01.T01 MTR_2g031510 45.192 520 235 10 21 500 29 538 5.61e-150 440
MsG0480022508.01.T01 MTR_4g094518 48.148 486 214 8 46 500 50 528 6.48e-150 439
MsG0480022508.01.T01 MTR_3g009880 43.654 520 261 8 7 500 5 518 7.64e-146 429
MsG0480022508.01.T01 MTR_3g009760 42.500 520 265 9 9 500 7 520 3.18e-145 427
MsG0480022508.01.T01 MTR_4g094515 46.641 521 240 9 16 502 24 540 1.06e-144 444
MsG0480022508.01.T01 MTR_4g094515 45.247 526 254 7 7 501 627 1149 6.84e-143 440
MsG0480022508.01.T01 MTR_2g031420 44.633 531 258 8 3 503 4 528 1.37e-144 426
MsG0480022508.01.T01 MTR_2g031460 42.939 524 263 7 6 499 7 524 2.07e-142 421
MsG0480022508.01.T01 MTR_4g094418 48.064 439 196 5 98 505 1 438 1.85e-136 408
MsG0480022508.01.T01 MTR_1g076830 33.840 526 301 12 22 507 22 540 3.64e-94 296
MsG0480022508.01.T01 MTR_2g031600 51.304 230 78 5 17 216 19 244 5.20e-68 224
MsG0480022508.01.T01 MTR_2g031600 51.250 160 77 1 342 501 241 399 1.20e-52 184
MsG0480022508.01.T01 MTR_3g009850 48.661 224 112 3 278 500 5 226 3.02e-64 209
MsG0480022508.01.T01 MTR_2g084370 55.056 89 38 1 122 208 1 89 8.40e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022508.01.T01 AT4G20800 49.901 507 222 6 26 503 23 526 4.76e-172 496
MsG0480022508.01.T01 AT1G30720 49.126 515 225 7 21 502 16 526 3.21e-168 486
MsG0480022508.01.T01 AT1G30730 46.981 530 245 7 4 502 1 525 1.19e-166 482
MsG0480022508.01.T01 AT1G26420 48.289 526 233 9 7 500 5 523 2.04e-165 479
MsG0480022508.01.T01 AT1G26390 49.102 501 219 7 32 500 29 525 2.94e-163 473
MsG0480022508.01.T01 AT1G34575 50.000 488 206 7 41 500 45 522 3.38e-163 473
MsG0480022508.01.T01 AT1G26380 49.400 500 217 8 32 500 29 523 4.97e-162 470
MsG0480022508.01.T01 AT1G30710 45.826 539 246 9 1 503 1 529 1.39e-159 464
MsG0480022508.01.T01 AT1G26400 46.053 532 251 10 4 504 1 527 9.18e-158 459
MsG0480022508.01.T01 AT1G26410 48.800 500 220 8 32 500 53 547 6.94e-156 455
MsG0480022508.01.T01 AT1G30700 46.825 504 230 7 30 500 26 524 6.04e-153 447
MsG0480022508.01.T01 AT5G44390 45.857 519 246 8 15 501 24 539 4.88e-149 437
MsG0480022508.01.T01 AT2G34810 44.101 517 253 6 20 501 23 538 2.30e-148 436
MsG0480022508.01.T01 AT4G20840 45.635 504 233 9 32 501 38 534 1.93e-147 433
MsG0480022508.01.T01 AT5G44400 44.906 530 249 10 10 500 9 534 2.43e-147 433
MsG0480022508.01.T01 AT2G34790 45.113 532 242 11 8 502 12 530 4.02e-144 424
MsG0480022508.01.T01 AT4G20820 44.000 525 251 8 7 500 12 524 3.44e-143 422
MsG0480022508.01.T01 AT1G30760 45.979 485 226 8 45 501 73 549 8.16e-143 422
MsG0480022508.01.T01 AT1G30760 45.979 485 226 8 45 501 55 531 9.84e-143 421
MsG0480022508.01.T01 AT1G01980 44.796 538 250 12 4 501 3 533 2.59e-141 418
MsG0480022508.01.T01 AT1G11770 44.071 506 242 9 30 501 30 528 4.87e-141 417
MsG0480022508.01.T01 AT5G44380 44.078 515 250 9 21 500 26 537 4.28e-138 409
MsG0480022508.01.T01 AT5G44380 44.250 513 248 9 23 500 68 577 5.18e-138 410
MsG0480022508.01.T01 AT5G44410 43.371 528 253 12 7 500 12 527 5.14e-134 399
MsG0480022508.01.T01 AT4G20860 42.406 507 252 8 21 500 34 527 9.69e-134 398
MsG0480022508.01.T01 AT5G44440 41.966 529 265 8 7 500 6 527 1.16e-133 398
MsG0480022508.01.T01 AT5G44440 41.966 529 265 8 7 500 76 597 1.01e-132 398
MsG0480022508.01.T01 AT4G20830 44.444 504 239 9 32 501 39 535 4.05e-132 394
MsG0480022508.01.T01 AT4G20830 44.444 504 239 9 32 501 39 535 1.64e-131 394
MsG0480022508.01.T01 AT5G44360 43.056 504 244 12 32 500 49 544 2.68e-130 390
MsG0480022508.01.T01 AT5G44360 43.056 504 244 12 32 500 33 528 2.84e-130 389
MsG0480022508.01.T01 AT1G30740 41.935 527 269 10 7 501 6 527 1.45e-122 369
MsG0480022508.01.T01 AT1G30740 41.935 527 269 10 7 501 9 530 1.53e-122 369

Find 88 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCTAATGTTGTTCAAAT+TGG 0.228780 4:+73406598 MsG0480022508.01.T01:CDS
AAGCTGAATGTTGTTGCTTT+TGG 0.230709 4:-73406027 None:intergenic
GGAAATTTGATGAGAAAATT+TGG 0.258916 4:+73406298 MsG0480022508.01.T01:CDS
TTTGACATTGCCAAAACTTA+TGG 0.263954 4:+73407204 MsG0480022508.01.T01:CDS
TGGCACATTTAACTGTTTCT+TGG 0.267359 4:-73406007 None:intergenic
AAACTTGCTTCCATAAGTTT+TGG 0.271849 4:-73407214 None:intergenic
AATAGATCTTTATGCAGTTT+TGG 0.273624 4:-73406565 None:intergenic
AGTAAGGAATTCCCCGAATT+AGG 0.285169 4:+73406700 MsG0480022508.01.T01:CDS
ACTTTGGTTCAAACCTAATT+CGG 0.311377 4:-73406713 None:intergenic
TGACCAATTTGAACAACATT+AGG 0.312133 4:-73406601 None:intergenic
TCTTTCATCTTTCCACCATA+TGG 0.316468 4:-73406952 None:intergenic
ATAGATTCTAGAGCTTCTTT+AGG 0.318699 4:-73406883 None:intergenic
TCTAGAGCTTCTTTAGGAAT+AGG 0.321024 4:-73406877 None:intergenic
GTTATAATTGCCAAAGGTTT+CGG 0.327951 4:-73405963 None:intergenic
GGTGGTGGTGGTGCTAGTTT+TGG 0.331271 4:+73406421 MsG0480022508.01.T01:CDS
AAGAAGCTCTAGAATCTATA+TGG 0.334429 4:+73406887 MsG0480022508.01.T01:CDS
CTTTGGTTCAAACCTAATTC+GGG 0.343696 4:-73406712 None:intergenic
GGGAGGCATTCCTCAATTAT+AGG 0.357483 4:+73407139 MsG0480022508.01.T01:CDS
CATTTCTCTGGTGGTGGGTA+TGG 0.360817 4:+73406277 MsG0480022508.01.T01:CDS
AATTATAGGGATGCTGATAT+TGG 0.376157 4:+73407153 MsG0480022508.01.T01:CDS
GTAGTGCAAGTTAGTTTCAT+TGG 0.379275 4:+73406637 MsG0480022508.01.T01:CDS
GTGATTGTCTTTCAATGCCT+TGG 0.383003 4:+73406734 MsG0480022508.01.T01:CDS
TCAAATCTCGTTACATTACT+TGG 0.393941 4:-73407186 None:intergenic
ACGATAACCTGTGGAGTTAT+CGG 0.397449 4:-73406475 None:intergenic
TAAATTGGTTGAGGATCCTT+TGG 0.399190 4:-73406823 None:intergenic
TACTCCTCTTGAAGCATTGT+TGG 0.402290 4:+73406795 MsG0480022508.01.T01:CDS
TACTATACCATGGATACAAT+GGG 0.405654 4:+73405741 None:intergenic
ATTAGACAAGACAATTGTTA+AGG 0.415135 4:-73405787 None:intergenic
TTCATATCTAAAGAAATTCT+CGG 0.418836 4:-73407286 None:intergenic
GAAATTCTCGGGATCAACTT+TGG 0.424393 4:-73407274 None:intergenic
GGTGGTCATTTCTCTGGTGG+TGG 0.426644 4:+73406271 MsG0480022508.01.T01:CDS
TCAACAGCATGGGTTGAATC+AGG 0.427451 4:+73406161 MsG0480022508.01.T01:CDS
TCTTTCATGGAAACTTCAAT+TGG 0.441584 4:+73406450 MsG0480022508.01.T01:CDS
GGAGGCATTCCTCAATTATA+GGG 0.443623 4:+73407140 MsG0480022508.01.T01:CDS
CTTATGCAATGGAATCCATA+TGG 0.450449 4:+73406937 MsG0480022508.01.T01:CDS
TATTCTTGATAGAAAATCAA+TGG 0.458066 4:+73406372 MsG0480022508.01.T01:CDS
GGTGCTGGTGGTCATTTCTC+TGG 0.459504 4:+73406265 MsG0480022508.01.T01:intron
AGCAACAACACCGAAACCTT+TGG 0.466175 4:+73405953 MsG0480022508.01.T01:CDS
CTCGGAGAATTCGAAACATA+AGG 0.468696 4:-73407117 None:intergenic
GTTGAGAATGAGGCATTGTT+TGG 0.470969 4:-73405891 None:intergenic
CAATTTCCCCATTGTATCCA+TGG 0.476747 4:-73405748 None:intergenic
CATATGGATTCCATTGCATA+AGG 0.477148 4:-73406936 None:intergenic
CAACTGATGTCGTTTACAAA+TGG 0.490862 4:+73406530 MsG0480022508.01.T01:CDS
AGTGGCGGTCACGACTTTGA+AGG 0.494173 4:+73406059 MsG0480022508.01.T01:CDS
GTGGTCATTTCTCTGGTGGT+GGG 0.501321 4:+73406272 MsG0480022508.01.T01:CDS
GACTTATACAATGATCTAGT+AGG 0.504206 4:-73407318 None:intergenic
AACAAGTCAAGTATAACAAA+AGG 0.504620 4:-73406104 None:intergenic
AACAAGTTTCCTACTCTATG+AGG 0.510558 4:-73407000 None:intergenic
TGCTTTACTCTAGGTGCTGG+TGG 0.512366 4:+73406253 MsG0480022508.01.T01:intron
TCATATCTAAAGAAATTCTC+GGG 0.512401 4:-73407285 None:intergenic
TGGGCTATAAGAGGTGGTGG+TGG 0.518497 4:+73406409 MsG0480022508.01.T01:CDS
TTTCCTACTCTATGAGGAAA+CGG 0.519543 4:-73406994 None:intergenic
GCTTCAAGAGGAGTACCAAT+TGG 0.520632 4:-73406787 None:intergenic
ATTCTTGATAGAAAATCAAT+GGG 0.522100 4:+73406373 MsG0480022508.01.T01:CDS
GTGAGAATTTCCTTATGCAA+TGG 0.526102 4:+73406926 MsG0480022508.01.T01:CDS
GTTGTTCAAATTGGTCAAGA+GGG 0.530168 4:+73406607 MsG0480022508.01.T01:CDS
CTACTATACCATGGATACAA+TGG 0.530615 4:+73405740 None:intergenic
ATTGGTTCCGATAACTCCAC+AGG 0.531147 4:+73406468 MsG0480022508.01.T01:CDS
ATATGGAAATTGATGATTGA+AGG 0.537491 4:+73406904 MsG0480022508.01.T01:CDS
TTTACAAGAATCAACAGCAT+GGG 0.543499 4:+73406151 MsG0480022508.01.T01:CDS
GCATTGAAAGACAATCACTT+TGG 0.543501 4:-73406729 None:intergenic
TATCAGCATCCCTATAATTG+AGG 0.547264 4:-73407149 None:intergenic
TGTTGTTCAAATTGGTCAAG+AGG 0.558808 4:+73406606 MsG0480022508.01.T01:CDS
AGCATTGTTGGAAGAACCAA+AGG 0.559301 4:+73406807 MsG0480022508.01.T01:CDS
GTTGAGGATAGTTGAGAATG+AGG 0.563351 4:-73405901 None:intergenic
GCTGGTGGTCATTTCTCTGG+TGG 0.564457 4:+73406268 MsG0480022508.01.T01:CDS
TGATTCAATACTTTAATCCG+TGG 0.570353 4:+73407025 MsG0480022508.01.T01:CDS
TTTGCAGTTATAATTGCCAA+AGG 0.570639 4:-73405969 None:intergenic
TAATTGAGGAATGCCTCCCT+CGG 0.575705 4:-73407135 None:intergenic
TGAGGAAACGGTGTTTCTGA+TGG 0.577426 4:-73406982 None:intergenic
GTTGAATCAGGTGCAACACT+TGG 0.578127 4:+73406173 MsG0480022508.01.T01:CDS
TCTTCCAACAATGCTTCAAG+AGG 0.594711 4:-73406799 None:intergenic
ACACCGTTTCCTCATAGAGT+AGG 0.600052 4:+73406991 MsG0480022508.01.T01:CDS
AAAAGAGTGGAATTAATCCA+AGG 0.600902 4:-73406751 None:intergenic
ATTTACAAGAATCAACAGCA+TGG 0.603350 4:+73406150 MsG0480022508.01.T01:CDS
TTATGTTTCGAATTCTCCGA+GGG 0.609571 4:+73407119 MsG0480022508.01.T01:CDS
TGTAAGTAACTTCAGAGACA+AGG 0.624291 4:-73405866 None:intergenic
TGTTTCGAATTCTCCGAGGG+AGG 0.634404 4:+73407122 MsG0480022508.01.T01:CDS
CAGCTTAGAATTCGAAGTGG+CGG 0.641139 4:+73406044 MsG0480022508.01.T01:CDS
TTTGGTTCAAACCTAATTCG+GGG 0.645523 4:-73406711 None:intergenic
ATGCAATGGAATCCATATGG+TGG 0.646403 4:+73406940 MsG0480022508.01.T01:CDS
ACATTGAAAACGATAACCTG+TGG 0.652393 4:-73406484 None:intergenic
GTAAGTAACTTCAGAGACAA+GGG 0.668268 4:-73405865 None:intergenic
CTTATGTTTCGAATTCTCCG+AGG 0.672859 4:+73407118 MsG0480022508.01.T01:CDS
TCAGAAGAATCATTAGACCA+CGG 0.676978 4:-73407042 None:intergenic
GTGAAAAGGAATGTCAGTGA+AGG 0.694179 4:+73406505 MsG0480022508.01.T01:CDS
ATTCAGCTTAGAATTCGAAG+TGG 0.701549 4:+73406041 MsG0480022508.01.T01:CDS
ACTATACCATGGATACAATG+GGG 0.728986 4:+73405742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTATTTTTTTGATAAAT+TGG - Chr4:73406841-73406860 None:intergenic 10.0%
!! ATTCTTGATAGAAAATCAAT+GGG + Chr4:73406373-73406392 MsG0480022508.01.T01:CDS 20.0%
!! TATTCTTGATAGAAAATCAA+TGG + Chr4:73406372-73406391 MsG0480022508.01.T01:CDS 20.0%
!! TTCATATCTAAAGAAATTCT+CGG - Chr4:73407289-73407308 None:intergenic 20.0%
!!! ACTTTTAATTTTGATGAGTA+AGG + Chr4:73406684-73406703 MsG0480022508.01.T01:CDS 20.0%
!!! TATTTTGTATTTTCATGTTG+AGG - Chr4:73405920-73405939 None:intergenic 20.0%
!!! TTTTTTTGATAAATTGGTTG+AGG - Chr4:73406835-73406854 None:intergenic 20.0%
! AACAAGTCAAGTATAACAAA+AGG - Chr4:73406107-73406126 None:intergenic 25.0%
! ATTAGACAAGACAATTGTTA+AGG - Chr4:73405790-73405809 None:intergenic 25.0%
! GCAAAAATTGTTGATGTTAA+GGG + Chr4:73406346-73406365 MsG0480022508.01.T01:CDS 25.0%
! GGAAATTTGATGAGAAAATT+TGG + Chr4:73406298-73406317 MsG0480022508.01.T01:CDS 25.0%
! TCATATCTAAAGAAATTCTC+GGG - Chr4:73407288-73407307 None:intergenic 25.0%
! TGCAAAAATTGTTGATGTTA+AGG + Chr4:73406345-73406364 MsG0480022508.01.T01:CDS 25.0%
!! AATAGATCTTTATGCAGTTT+TGG - Chr4:73406568-73406587 None:intergenic 25.0%
!! AGTTTCATTGGTCAATTTTT+AGG + Chr4:73406649-73406668 MsG0480022508.01.T01:CDS 25.0%
!! ATATGGAAATTGATGATTGA+AGG + Chr4:73406904-73406923 MsG0480022508.01.T01:CDS 25.0%
!! TTATCGTTTTCAATGTGAAA+AGG + Chr4:73406491-73406510 MsG0480022508.01.T01:CDS 25.0%
AAAAGAGTGGAATTAATCCA+AGG - Chr4:73406754-73406773 None:intergenic 30.0%
AATTATAGGGATGCTGATAT+TGG + Chr4:73407153-73407172 MsG0480022508.01.T01:CDS 30.0%
ATTTACAAGAATCAACAGCA+TGG + Chr4:73406150-73406169 MsG0480022508.01.T01:CDS 30.0%
CAACCTAATGTTGTTCAAAT+TGG + Chr4:73406598-73406617 MsG0480022508.01.T01:CDS 30.0%
GACTTATACAATGATCTAGT+AGG - Chr4:73407321-73407340 None:intergenic 30.0%
GTTATAATTGCCAAAGGTTT+CGG - Chr4:73405966-73405985 None:intergenic 30.0%
TCAAATCTCGTTACATTACT+TGG - Chr4:73407189-73407208 None:intergenic 30.0%
TCTTTCATGGAAACTTCAAT+TGG + Chr4:73406450-73406469 MsG0480022508.01.T01:CDS 30.0%
TGACCAATTTGAACAACATT+AGG - Chr4:73406604-73406623 None:intergenic 30.0%
TGATTCAATACTTTAATCCG+TGG + Chr4:73407025-73407044 MsG0480022508.01.T01:CDS 30.0%
TTTACAAGAATCAACAGCAT+GGG + Chr4:73406151-73406170 MsG0480022508.01.T01:CDS 30.0%
TTTGACATTGCCAAAACTTA+TGG + Chr4:73407204-73407223 MsG0480022508.01.T01:CDS 30.0%
TTTGCAGTTATAATTGCCAA+AGG - Chr4:73405972-73405991 None:intergenic 30.0%
! AACGTCATGTGAATTTTTCA+AGG + Chr4:73407073-73407092 MsG0480022508.01.T01:CDS 30.0%
! ACTTTGGTTCAAACCTAATT+CGG - Chr4:73406716-73406735 None:intergenic 30.0%
!! AAACTTGCTTCCATAAGTTT+TGG - Chr4:73407217-73407236 None:intergenic 30.0%
!! AAGAAGCTCTAGAATCTATA+TGG + Chr4:73406887-73406906 MsG0480022508.01.T01:CDS 30.0%
!! ATAGATTCTAGAGCTTCTTT+AGG - Chr4:73406886-73406905 None:intergenic 30.0%
!! TATGGAAGCAAGTTTTTCAA+AGG + Chr4:73407222-73407241 MsG0480022508.01.T01:CDS 30.0%
!!! AATGGGAGAAGATCTTTTTT+GGG + Chr4:73406390-73406409 MsG0480022508.01.T01:CDS 30.0%
!!! AATTCCACTCTTTTTTGGTA+TGG + Chr4:73406760-73406779 MsG0480022508.01.T01:CDS 30.0%
!!! GGATTAATTCCACTCTTTTT+TGG + Chr4:73406755-73406774 MsG0480022508.01.T01:CDS 30.0%
!!! GTTTTGGTGTTATTCTTTCA+TGG + Chr4:73406437-73406456 MsG0480022508.01.T01:CDS 30.0%
AACAAGTTTCCTACTCTATG+AGG - Chr4:73407003-73407022 None:intergenic 35.0%
AATTGGTCAAGAGGGAAAAA+AGG + Chr4:73406615-73406634 MsG0480022508.01.T01:CDS 35.0%
ACATTGAAAACGATAACCTG+TGG - Chr4:73406487-73406506 None:intergenic 35.0%
ATTCAGCTTAGAATTCGAAG+TGG + Chr4:73406041-73406060 MsG0480022508.01.T01:CDS 35.0%
CATATGGATTCCATTGCATA+AGG - Chr4:73406939-73406958 None:intergenic 35.0%
CTTATGCAATGGAATCCATA+TGG + Chr4:73406937-73406956 MsG0480022508.01.T01:CDS 35.0%
GCATTGAAAGACAATCACTT+TGG - Chr4:73406732-73406751 None:intergenic 35.0%
GTAAGTAACTTCAGAGACAA+GGG - Chr4:73405868-73405887 None:intergenic 35.0%
GTGAGAATTTCCTTATGCAA+TGG + Chr4:73406926-73406945 MsG0480022508.01.T01:CDS 35.0%
GTTGTTCAAATTGGTCAAGA+GGG + Chr4:73406607-73406626 MsG0480022508.01.T01:CDS 35.0%
TAAATTGGTTGAGGATCCTT+TGG - Chr4:73406826-73406845 None:intergenic 35.0%
TATCAGCATCCCTATAATTG+AGG - Chr4:73407152-73407171 None:intergenic 35.0%
TCAGAAGAATCATTAGACCA+CGG - Chr4:73407045-73407064 None:intergenic 35.0%
TCTTTCATCTTTCCACCATA+TGG - Chr4:73406955-73406974 None:intergenic 35.0%
TGTAAGTAACTTCAGAGACA+AGG - Chr4:73405869-73405888 None:intergenic 35.0%
TGTTGTTCAAATTGGTCAAG+AGG + Chr4:73406606-73406625 MsG0480022508.01.T01:CDS 35.0%
TTATGTTTCGAATTCTCCGA+GGG + Chr4:73407119-73407138 MsG0480022508.01.T01:CDS 35.0%
TTTCCTACTCTATGAGGAAA+CGG - Chr4:73406997-73407016 None:intergenic 35.0%
! CAACTGATGTCGTTTACAAA+TGG + Chr4:73406530-73406549 MsG0480022508.01.T01:CDS 35.0%
! CTTTGGTTCAAACCTAATTC+GGG - Chr4:73406715-73406734 None:intergenic 35.0%
! GTAGTGCAAGTTAGTTTCAT+TGG + Chr4:73406637-73406656 MsG0480022508.01.T01:CDS 35.0%
! TCTAGAGCTTCTTTAGGAAT+AGG - Chr4:73406880-73406899 None:intergenic 35.0%
! TGGCACATTTAACTGTTTCT+TGG - Chr4:73406010-73406029 None:intergenic 35.0%
! TTTGGTTCAAACCTAATTCG+GGG - Chr4:73406714-73406733 None:intergenic 35.0%
!!! AAGCTGAATGTTGTTGCTTT+TGG - Chr4:73406030-73406049 None:intergenic 35.0%
!!! CAATGGGAGAAGATCTTTTT+TGG + Chr4:73406389-73406408 MsG0480022508.01.T01:CDS 35.0%
!!! CTTGTTGCTTTTCTTTGCAA+TGG - Chr4:73406212-73406231 None:intergenic 35.0%
!!! GATCTTTTTTGGGCTATAAG+AGG + Chr4:73406400-73406419 MsG0480022508.01.T01:CDS 35.0%
!!! GGGGAAATTGTTTTTTCTCA+TGG + Chr4:73405761-73405780 MsG0480022508.01.T01:CDS 35.0%
ACGATAACCTGTGGAGTTAT+CGG - Chr4:73406478-73406497 None:intergenic 40.0%
AGCATTGTTGGAAGAACCAA+AGG + Chr4:73406807-73406826 MsG0480022508.01.T01:CDS 40.0%
AGTAAGGAATTCCCCGAATT+AGG + Chr4:73406700-73406719 MsG0480022508.01.T01:CDS 40.0%
ATGCAATGGAATCCATATGG+TGG + Chr4:73406940-73406959 MsG0480022508.01.T01:CDS 40.0%
CTCGGAGAATTCGAAACATA+AGG - Chr4:73407120-73407139 None:intergenic 40.0%
CTGACCATACCAAAAAAGAG+TGG - Chr4:73406767-73406786 None:intergenic 40.0%
CTTATGTTTCGAATTCTCCG+AGG + Chr4:73407118-73407137 MsG0480022508.01.T01:CDS 40.0%
GAAATTCTCGGGATCAACTT+TGG - Chr4:73407277-73407296 None:intergenic 40.0%
GTGAAAAGGAATGTCAGTGA+AGG + Chr4:73406505-73406524 MsG0480022508.01.T01:CDS 40.0%
GTGATTGTCTTTCAATGCCT+TGG + Chr4:73406734-73406753 MsG0480022508.01.T01:CDS 40.0%
GTTGAGGATAGTTGAGAATG+AGG - Chr4:73405904-73405923 None:intergenic 40.0%
TCTTCCAACAATGCTTCAAG+AGG - Chr4:73406802-73406821 None:intergenic 40.0%
! TTTTGGTATGGTCAGCCAAT+TGG + Chr4:73406772-73406791 MsG0480022508.01.T01:CDS 40.0%
!! GGAGGCATTCCTCAATTATA+GGG + Chr4:73407140-73407159 MsG0480022508.01.T01:CDS 40.0%
!! GTTGAGAATGAGGCATTGTT+TGG - Chr4:73405894-73405913 None:intergenic 40.0%
!! TACTCCTCTTGAAGCATTGT+TGG + Chr4:73406795-73406814 MsG0480022508.01.T01:CDS 40.0%
!!! CTTTTTTGGGCTATAAGAGG+TGG + Chr4:73406403-73406422 MsG0480022508.01.T01:CDS 40.0%
ACACCGTTTCCTCATAGAGT+AGG + Chr4:73406991-73407010 MsG0480022508.01.T01:CDS 45.0%
AGCAACAACACCGAAACCTT+TGG + Chr4:73405953-73405972 MsG0480022508.01.T01:CDS 45.0%
CAGCTTAGAATTCGAAGTGG+CGG + Chr4:73406044-73406063 MsG0480022508.01.T01:CDS 45.0%
GTTGAATCAGGTGCAACACT+TGG + Chr4:73406173-73406192 MsG0480022508.01.T01:CDS 45.0%
TAATTGAGGAATGCCTCCCT+CGG - Chr4:73407138-73407157 None:intergenic 45.0%
! AACAAGCTTGCTTTCCCATC+TGG + Chr4:73406226-73406245 MsG0480022508.01.T01:intron 45.0%
! ACAAGCTTGCTTTCCCATCT+GGG + Chr4:73406227-73406246 MsG0480022508.01.T01:intron 45.0%
! ATTGGTTCCGATAACTCCAC+AGG + Chr4:73406468-73406487 MsG0480022508.01.T01:CDS 45.0%
! TCAACAGCATGGGTTGAATC+AGG + Chr4:73406161-73406180 MsG0480022508.01.T01:CDS 45.0%
! TGAGGAAACGGTGTTTCTGA+TGG - Chr4:73406985-73407004 None:intergenic 45.0%
! TTTTGGGCTATAAGAGGTGG+TGG + Chr4:73406406-73406425 MsG0480022508.01.T01:CDS 45.0%
!! GCTTCAAGAGGAGTACCAAT+TGG - Chr4:73406790-73406809 None:intergenic 45.0%
!! GGGAGGCATTCCTCAATTAT+AGG + Chr4:73407139-73407158 MsG0480022508.01.T01:CDS 45.0%
AGAGTAAAGCAGACCCCAGA+TGG - Chr4:73406244-73406263 None:intergenic 50.0%
GAGTAAAGCAGACCCCAGAT+GGG - Chr4:73406243-73406262 None:intergenic 50.0%
GTCTGCTTTACTCTAGGTGC+TGG + Chr4:73406250-73406269 MsG0480022508.01.T01:intron 50.0%
GTGGTCATTTCTCTGGTGGT+GGG + Chr4:73406272-73406291 MsG0480022508.01.T01:CDS 50.0%
TGTTTCGAATTCTCCGAGGG+AGG + Chr4:73407122-73407141 MsG0480022508.01.T01:CDS 50.0%
! CAAGCTTGCTTTCCCATCTG+GGG + Chr4:73406228-73406247 MsG0480022508.01.T01:intron 50.0%
! TCTGGGGTCTGCTTTACTCT+AGG + Chr4:73406244-73406263 MsG0480022508.01.T01:intron 50.0%
!! CATTTCTCTGGTGGTGGGTA+TGG + Chr4:73406277-73406296 MsG0480022508.01.T01:CDS 50.0%
!! TGCTTTACTCTAGGTGCTGG+TGG + Chr4:73406253-73406272 MsG0480022508.01.T01:intron 50.0%
AGTGGCGGTCACGACTTTGA+AGG + Chr4:73406059-73406078 MsG0480022508.01.T01:CDS 55.0%
GCTGGTGGTCATTTCTCTGG+TGG + Chr4:73406268-73406287 MsG0480022508.01.T01:CDS 55.0%
GGTGGTCATTTCTCTGGTGG+TGG + Chr4:73406271-73406290 MsG0480022508.01.T01:CDS 55.0%
! TGGGCTATAAGAGGTGGTGG+TGG + Chr4:73406409-73406428 MsG0480022508.01.T01:CDS 55.0%
!! GGTGCTGGTGGTCATTTCTC+TGG + Chr4:73406265-73406284 MsG0480022508.01.T01:intron 55.0%
!!! GGTGGTGGTGGTGCTAGTTT+TGG + Chr4:73406421-73406440 MsG0480022508.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 73405750 73407347 73405750 ID=MsG0480022508.01;Name=MsG0480022508.01
Chr4 mRNA 73405750 73407347 73405750 ID=MsG0480022508.01.T01;Parent=MsG0480022508.01;Name=MsG0480022508.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|508
Chr4 exon 73405750 73406194 73405750 ID=MsG0480022508.01.T01:exon:5347;Parent=MsG0480022508.01.T01
Chr4 exon 73406266 73407347 73406266 ID=MsG0480022508.01.T01:exon:5348;Parent=MsG0480022508.01.T01
Chr4 CDS 73405750 73406194 73405750 ID=MsG0480022508.01.T01:cds;Parent=MsG0480022508.01.T01
Chr4 CDS 73406266 73407347 73406266 ID=MsG0480022508.01.T01:cds;Parent=MsG0480022508.01.T01
Gene Sequence

>MsG0480022508.01.T01

ATGGATACAATGGGGAAATTGTTTTTTCTCATGGCAACCTTAACAATTGTCTTGTCTAATTCAACAACAACAGCACAATCATCTATTCAACTTTTTTTAAATTGTCTTTCACATTCCCTTGTCTCTGAAGTTACTTACACACCAAACAATGCCTCATTCTCAACTATCCTCAACATGAAAATACAAAATAAGAGATTTAAAACAGCAACAACACCGAAACCTTTGGCAATTATAACTGCAAAAGATGATTCTCATGTCCAAGAAACAGTTAAATGTGCCAAAAGCAACAACATTCAGCTTAGAATTCGAAGTGGCGGTCACGACTTTGAAGGTTATTCATATGTATCAGATGTGCCTTTTGTTATACTTGACTTGTTTAATCTCAATTCAGTTGATGTTAATTTACAAGAATCAACAGCATGGGTTGAATCAGGTGCAACACTTGGTGCTGGTGGTCATTTCTCTGGTGGTGGGTATGGAAATTTGATGAGAAAATTTGGTCTTTCTGTTGATAATATTATCGATGCAAAAATTGTTGATGTTAAGGGTAATATTCTTGATAGAAAATCAATGGGAGAAGATCTTTTTTGGGCTATAAGAGGTGGTGGTGGTGCTAGTTTTGGTGTTATTCTTTCATGGAAACTTCAATTGGTTCCGATAACTCCACAGGTTATCGTTTTCAATGTGAAAAGGAATGTCAGTGAAGGTGCAACTGATGTCGTTTACAAATGGCAATCAATTGCACCAAAACTGCATAAAGATCTATTCATTAGAGTGCAACCTAATGTTGTTCAAATTGGTCAAGAGGGAAAAAAGGTAGTGCAAGTTAGTTTCATTGGTCAATTTTTAGGAAAAGTTGAAAGACTTTTAATTTTGATGAGTAAGGAATTCCCCGAATTAGGTTTGAACCAAAGTGATTGTCTTTCAATGCCTTGGATTAATTCCACTCTTTTTTGGTATGGTCAGCCAATTGGTACTCCTCTTGAAGCATTGTTGGAAGAACCAAAGGATCCTCAACCAATTTATCAAAAAAATAAATCAGATTATGTGAAGAAACCTATTCCTAAAGAAGCTCTAGAATCTATATGGAAATTGATGATTGAAGGTGAGAATTTCCTTATGCAATGGAATCCATATGGTGGAAAGATGAAAGAGATATTGCCATCAGAAACACCGTTTCCTCATAGAGTAGGAAACTTGTTCTTGATTCAATACTTTAATCCGTGGTCTAATGATTCTTCTGAAGTTAGTGAACGTCATGTGAATTTTTCAAGGTCGTTTTATGAATTTATGACGCCTTATGTTTCGAATTCTCCGAGGGAGGCATTCCTCAATTATAGGGATGCTGATATTGGTGCTAATTATCCAAGTAATGTAACGAGATTTGACATTGCCAAAACTTATGGAAGCAAGTTTTTCAAAGGAAATTTTGAAAGACTAGTTAGTGTAAAAACCAAAGTTGATCCCGAGAATTTCTTTAGATATGAACAAAGTATTCCTACTAGATCATTGTATAAGTCATATTGA

Protein sequence

>MsG0480022508.01.T01

MDTMGKLFFLMATLTIVLSNSTTTAQSSIQLFLNCLSHSLVSEVTYTPNNASFSTILNMKIQNKRFKTATTPKPLAIITAKDDSHVQETVKCAKSNNIQLRIRSGGHDFEGYSYVSDVPFVILDLFNLNSVDVNLQESTAWVESGATLGAGGHFSGGGYGNLMRKFGLSVDNIIDAKIVDVKGNILDRKSMGEDLFWAIRGGGGASFGVILSWKLQLVPITPQVIVFNVKRNVSEGATDVVYKWQSIAPKLHKDLFIRVQPNVVQIGQEGKKVVQVSFIGQFLGKVERLLILMSKEFPELGLNQSDCLSMPWINSTLFWYGQPIGTPLEALLEEPKDPQPIYQKNKSDYVKKPIPKEALESIWKLMIEGENFLMQWNPYGGKMKEILPSETPFPHRVGNLFLIQYFNPWSNDSSEVSERHVNFSRSFYEFMTPYVSNSPREAFLNYRDADIGANYPSNVTRFDIAKTYGSKFFKGNFERLVSVKTKVDPENFFRYEQSIPTRSLYKSY*