Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022508.01.T01 | XP_003608243.1 | 86.364 | 528 | 48 | 2 | 1 | 504 | 1 | 528 | 0 | 931 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022508.01.T01 | Q9SVG7 | 49.901 | 507 | 222 | 6 | 26 | 503 | 23 | 526 | 4.67E-171 | 496 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022508.01.T01 | Q2HTY4 | 86.364 | 528 | 48 | 2 | 1 | 504 | 1 | 528 | 0.0 | 931 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048302.01 | MsG0480022508.01 | 0.859927 | 2.946411e-63 | 7.913945e-60 |
MsG0080048699.01 | MsG0480022508.01 | -0.804362 | 2.240136e-49 | 1.152783e-46 |
MsG0180002989.01 | MsG0480022508.01 | 0.821091 | 4.854569e-53 | 3.911741e-50 |
MsG0180003130.01 | MsG0480022508.01 | 0.819904 | 9.088481e-53 | 7.085680e-50 |
MsG0180004393.01 | MsG0480022508.01 | 0.819853 | 9.336199e-53 | 7.268231e-50 |
MsG0180005996.01 | MsG0480022508.01 | 0.861518 | 9.695138e-64 | 2.750924e-60 |
MsG0180005997.01 | MsG0480022508.01 | 0.825999 | 3.451167e-54 | 3.196464e-51 |
MsG0180006187.01 | MsG0480022508.01 | 0.843011 | 1.821094e-58 | 2.810772e-55 |
MsG0280011053.01 | MsG0480022508.01 | 0.824473 | 7.919346e-54 | 7.021369e-51 |
MsG0280011350.01 | MsG0480022508.01 | 0.803789 | 2.947873e-49 | 1.494817e-46 |
MsG0380012008.01 | MsG0480022508.01 | 0.821609 | 3.685713e-53 | 3.012879e-50 |
MsG0380012607.01 | MsG0480022508.01 | 0.853945 | 1.707901e-61 | 3.753174e-58 |
MsG0380013951.01 | MsG0480022508.01 | -0.813930 | 1.994968e-51 | 1.320232e-48 |
MsG0380013968.01 | MsG0480022508.01 | -0.818844 | 1.585360e-52 | 1.200156e-49 |
MsG0480018904.01 | MsG0480022508.01 | 0.831506 | 1.605799e-55 | 1.746147e-52 |
MsG0480020444.01 | MsG0480022508.01 | 0.811256 | 7.668342e-51 | 4.723960e-48 |
MsG0480021001.01 | MsG0480022508.01 | 0.800319 | 1.524194e-48 | 7.075796e-46 |
MsG0480022117.01 | MsG0480022508.01 | 0.801348 | 9.395479e-49 | 4.476778e-46 |
MsG0480022125.01 | MsG0480022508.01 | 0.822615 | 2.154217e-53 | 1.812405e-50 |
MsG0480022507.01 | MsG0480022508.01 | 0.958891 | 7.637743e-117 | 2.938510e-111 |
MsG0480022508.01 | MsG0480022680.01 | 0.815595 | 8.531969e-52 | 5.907874e-49 |
MsG0480022508.01 | MsG0480023947.01 | 0.822220 | 2.661947e-53 | 2.214153e-50 |
MsG0480022508.01 | MsG0580024467.01 | 0.808098 | 3.659210e-50 | 2.073638e-47 |
MsG0480022508.01 | MsG0580025180.01 | 0.803407 | 3.538100e-49 | 1.776548e-46 |
MsG0480022508.01 | MsG0580025870.01 | 0.804770 | 1.841788e-49 | 9.578326e-47 |
MsG0480022508.01 | MsG0580028051.01 | 0.812666 | 3.779572e-51 | 2.417589e-48 |
MsG0480022508.01 | MsG0580029583.01 | 0.833518 | 5.092130e-56 | 5.878636e-53 |
MsG0480022508.01 | MsG0580029930.01 | 0.816125 | 6.496595e-52 | 4.564164e-49 |
MsG0480022508.01 | MsG0680030996.01 | 0.832352 | 9.930950e-56 | 1.107116e-52 |
MsG0480022508.01 | MsG0680031429.01 | 0.802183 | 6.329717e-49 | 3.080486e-46 |
MsG0480022508.01 | MsG0680035565.01 | 0.810595 | 1.066212e-50 | 6.453922e-48 |
MsG0480022508.01 | MsG0680035842.01 | 0.801286 | 9.675251e-49 | 4.602889e-46 |
MsG0480022508.01 | MsG0780038118.01 | 0.804783 | 1.830353e-49 | 9.522072e-47 |
MsG0480022508.01 | MsG0780038515.01 | 0.802484 | 5.488800e-49 | 2.691817e-46 |
MsG0480022508.01 | MsG0780039190.01 | 0.843593 | 1.274074e-58 | 2.003305e-55 |
MsG0480022508.01 | MsG0780040060.01 | 0.836320 | 1.002997e-56 | 1.259683e-53 |
MsG0480022508.01 | MsG0780040480.01 | 0.865727 | 4.787898e-65 | 1.573920e-61 |
MsG0480022508.01 | MsG0780041589.01 | 0.835922 | 1.265729e-56 | 1.570386e-53 |
MsG0480022508.01 | MsG0880042368.01 | 0.853613 | 2.127842e-61 | 4.624822e-58 |
MsG0480022508.01 | MsG0880043246.01 | 0.841437 | 4.753671e-58 | 6.985339e-55 |
MsG0480022508.01 | MsG0880043262.01 | 0.807536 | 4.818423e-50 | 2.690601e-47 |
MsG0480022508.01 | MsG0880043824.01 | 0.847868 | 8.803677e-60 | 1.586392e-56 |
MsG0480022508.01 | MsG0880044669.01 | 0.829438 | 5.146609e-55 | 5.267438e-52 |
MsG0480022508.01 | MsG0880045861.01 | 0.842955 | 1.885121e-58 | 2.904585e-55 |
MsG0480022508.01 | MsG0880047081.01 | 0.820509 | 6.606878e-53 | 5.237828e-50 |
MsG0380016644.01 | MsG0480022508.01 | 0.819895 | 9.131344e-53 | 7.117358e-50 |
MsG0380018026.01 | MsG0480022508.01 | 0.806521 | 7.900861e-50 | 4.297464e-47 |
MsG0280006581.01 | MsG0480022508.01 | 0.836408 | 9.524787e-57 | 1.199200e-53 |
MsG0280007369.01 | MsG0480022508.01 | 0.810228 | 1.279706e-50 | 7.670943e-48 |
MsG0280007759.01 | MsG0480022508.01 | 0.822047 | 2.919319e-53 | 2.416209e-50 |
MsG0280007760.01 | MsG0480022508.01 | 0.827957 | 1.174328e-54 | 1.151014e-51 |
MsG0280010354.01 | MsG0480022508.01 | 0.804603 | 1.995852e-49 | 1.033440e-46 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0380011900.01 | MsG0480022508.01 | PPI |
MsG0380011901.01 | MsG0480022508.01 | PPI |
MsG0380011899.01 | MsG0480022508.01 | PPI |
MsG0480022507.01 | MsG0480022508.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022508.01.T01 | MTR_4g091200 | 86.364 | 528 | 48 | 2 | 1 | 504 | 1 | 528 | 0.0 | 931 |
MsG0480022508.01.T01 | MTR_6g017205 | 84.906 | 530 | 56 | 2 | 1 | 506 | 1 | 530 | 0.0 | 910 |
MsG0480022508.01.T01 | MTR_4g057990 | 76.850 | 527 | 91 | 5 | 4 | 503 | 1 | 523 | 0.0 | 805 |
MsG0480022508.01.T01 | MTR_4g091190 | 72.642 | 530 | 115 | 4 | 1 | 502 | 1 | 528 | 0.0 | 773 |
MsG0480022508.01.T01 | MTR_4g088355 | 73.031 | 508 | 107 | 3 | 26 | 503 | 27 | 534 | 0.0 | 753 |
MsG0480022508.01.T01 | MTR_2g023590 | 73.150 | 473 | 101 | 3 | 59 | 507 | 1 | 471 | 0.0 | 703 |
MsG0480022508.01.T01 | MTR_4g091170 | 69.063 | 459 | 100 | 2 | 68 | 502 | 102 | 542 | 0.0 | 656 |
MsG0480022508.01.T01 | MTR_4g091150 | 57.249 | 538 | 192 | 6 | 1 | 500 | 1 | 538 | 0.0 | 595 |
MsG0480022508.01.T01 | MTR_2g031560 | 49.701 | 501 | 220 | 4 | 31 | 501 | 24 | 522 | 1.15e-178 | 514 |
MsG0480022508.01.T01 | MTR_2g031590 | 48.560 | 521 | 225 | 9 | 17 | 501 | 18 | 531 | 2.56e-175 | 504 |
MsG0480022508.01.T01 | MTR_4g094498 | 48.387 | 527 | 235 | 7 | 8 | 501 | 11 | 533 | 1.22e-168 | 488 |
MsG0480022508.01.T01 | MTR_4g094488 | 47.850 | 535 | 239 | 9 | 6 | 502 | 5 | 537 | 4.47e-160 | 466 |
MsG0480022508.01.T01 | MTR_4g094520 | 46.816 | 534 | 244 | 11 | 2 | 501 | 4 | 531 | 1.80e-159 | 464 |
MsG0480022508.01.T01 | MTR_4g094478 | 47.448 | 529 | 242 | 8 | 8 | 501 | 7 | 534 | 6.34e-159 | 463 |
MsG0480022508.01.T01 | MTR_2g031390 | 46.967 | 511 | 234 | 8 | 23 | 500 | 21 | 527 | 9.59e-159 | 462 |
MsG0480022508.01.T01 | MTR_4g094495 | 48.936 | 517 | 226 | 7 | 22 | 502 | 26 | 540 | 3.34e-158 | 461 |
MsG0480022508.01.T01 | MTR_4g094492 | 44.528 | 530 | 257 | 7 | 8 | 501 | 7 | 535 | 2.55e-155 | 453 |
MsG0480022508.01.T01 | MTR_4g094480 | 47.170 | 530 | 243 | 8 | 9 | 502 | 7 | 535 | 2.26e-154 | 451 |
MsG0480022508.01.T01 | MTR_3g009820 | 43.462 | 520 | 260 | 9 | 9 | 500 | 7 | 520 | 1.90e-151 | 443 |
MsG0480022508.01.T01 | MTR_2g031490 | 46.845 | 523 | 237 | 11 | 14 | 500 | 19 | 536 | 2.87e-151 | 443 |
MsG0480022508.01.T01 | MTR_2g031510 | 45.192 | 520 | 235 | 10 | 21 | 500 | 29 | 538 | 5.61e-150 | 440 |
MsG0480022508.01.T01 | MTR_4g094518 | 48.148 | 486 | 214 | 8 | 46 | 500 | 50 | 528 | 6.48e-150 | 439 |
MsG0480022508.01.T01 | MTR_3g009880 | 43.654 | 520 | 261 | 8 | 7 | 500 | 5 | 518 | 7.64e-146 | 429 |
MsG0480022508.01.T01 | MTR_3g009760 | 42.500 | 520 | 265 | 9 | 9 | 500 | 7 | 520 | 3.18e-145 | 427 |
MsG0480022508.01.T01 | MTR_4g094515 | 46.641 | 521 | 240 | 9 | 16 | 502 | 24 | 540 | 1.06e-144 | 444 |
MsG0480022508.01.T01 | MTR_4g094515 | 45.247 | 526 | 254 | 7 | 7 | 501 | 627 | 1149 | 6.84e-143 | 440 |
MsG0480022508.01.T01 | MTR_2g031420 | 44.633 | 531 | 258 | 8 | 3 | 503 | 4 | 528 | 1.37e-144 | 426 |
MsG0480022508.01.T01 | MTR_2g031460 | 42.939 | 524 | 263 | 7 | 6 | 499 | 7 | 524 | 2.07e-142 | 421 |
MsG0480022508.01.T01 | MTR_4g094418 | 48.064 | 439 | 196 | 5 | 98 | 505 | 1 | 438 | 1.85e-136 | 408 |
MsG0480022508.01.T01 | MTR_1g076830 | 33.840 | 526 | 301 | 12 | 22 | 507 | 22 | 540 | 3.64e-94 | 296 |
MsG0480022508.01.T01 | MTR_2g031600 | 51.304 | 230 | 78 | 5 | 17 | 216 | 19 | 244 | 5.20e-68 | 224 |
MsG0480022508.01.T01 | MTR_2g031600 | 51.250 | 160 | 77 | 1 | 342 | 501 | 241 | 399 | 1.20e-52 | 184 |
MsG0480022508.01.T01 | MTR_3g009850 | 48.661 | 224 | 112 | 3 | 278 | 500 | 5 | 226 | 3.02e-64 | 209 |
MsG0480022508.01.T01 | MTR_2g084370 | 55.056 | 89 | 38 | 1 | 122 | 208 | 1 | 89 | 8.40e-31 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022508.01.T01 | AT4G20800 | 49.901 | 507 | 222 | 6 | 26 | 503 | 23 | 526 | 4.76e-172 | 496 |
MsG0480022508.01.T01 | AT1G30720 | 49.126 | 515 | 225 | 7 | 21 | 502 | 16 | 526 | 3.21e-168 | 486 |
MsG0480022508.01.T01 | AT1G30730 | 46.981 | 530 | 245 | 7 | 4 | 502 | 1 | 525 | 1.19e-166 | 482 |
MsG0480022508.01.T01 | AT1G26420 | 48.289 | 526 | 233 | 9 | 7 | 500 | 5 | 523 | 2.04e-165 | 479 |
MsG0480022508.01.T01 | AT1G26390 | 49.102 | 501 | 219 | 7 | 32 | 500 | 29 | 525 | 2.94e-163 | 473 |
MsG0480022508.01.T01 | AT1G34575 | 50.000 | 488 | 206 | 7 | 41 | 500 | 45 | 522 | 3.38e-163 | 473 |
MsG0480022508.01.T01 | AT1G26380 | 49.400 | 500 | 217 | 8 | 32 | 500 | 29 | 523 | 4.97e-162 | 470 |
MsG0480022508.01.T01 | AT1G30710 | 45.826 | 539 | 246 | 9 | 1 | 503 | 1 | 529 | 1.39e-159 | 464 |
MsG0480022508.01.T01 | AT1G26400 | 46.053 | 532 | 251 | 10 | 4 | 504 | 1 | 527 | 9.18e-158 | 459 |
MsG0480022508.01.T01 | AT1G26410 | 48.800 | 500 | 220 | 8 | 32 | 500 | 53 | 547 | 6.94e-156 | 455 |
MsG0480022508.01.T01 | AT1G30700 | 46.825 | 504 | 230 | 7 | 30 | 500 | 26 | 524 | 6.04e-153 | 447 |
MsG0480022508.01.T01 | AT5G44390 | 45.857 | 519 | 246 | 8 | 15 | 501 | 24 | 539 | 4.88e-149 | 437 |
MsG0480022508.01.T01 | AT2G34810 | 44.101 | 517 | 253 | 6 | 20 | 501 | 23 | 538 | 2.30e-148 | 436 |
MsG0480022508.01.T01 | AT4G20840 | 45.635 | 504 | 233 | 9 | 32 | 501 | 38 | 534 | 1.93e-147 | 433 |
MsG0480022508.01.T01 | AT5G44400 | 44.906 | 530 | 249 | 10 | 10 | 500 | 9 | 534 | 2.43e-147 | 433 |
MsG0480022508.01.T01 | AT2G34790 | 45.113 | 532 | 242 | 11 | 8 | 502 | 12 | 530 | 4.02e-144 | 424 |
MsG0480022508.01.T01 | AT4G20820 | 44.000 | 525 | 251 | 8 | 7 | 500 | 12 | 524 | 3.44e-143 | 422 |
MsG0480022508.01.T01 | AT1G30760 | 45.979 | 485 | 226 | 8 | 45 | 501 | 73 | 549 | 8.16e-143 | 422 |
MsG0480022508.01.T01 | AT1G30760 | 45.979 | 485 | 226 | 8 | 45 | 501 | 55 | 531 | 9.84e-143 | 421 |
MsG0480022508.01.T01 | AT1G01980 | 44.796 | 538 | 250 | 12 | 4 | 501 | 3 | 533 | 2.59e-141 | 418 |
MsG0480022508.01.T01 | AT1G11770 | 44.071 | 506 | 242 | 9 | 30 | 501 | 30 | 528 | 4.87e-141 | 417 |
MsG0480022508.01.T01 | AT5G44380 | 44.078 | 515 | 250 | 9 | 21 | 500 | 26 | 537 | 4.28e-138 | 409 |
MsG0480022508.01.T01 | AT5G44380 | 44.250 | 513 | 248 | 9 | 23 | 500 | 68 | 577 | 5.18e-138 | 410 |
MsG0480022508.01.T01 | AT5G44410 | 43.371 | 528 | 253 | 12 | 7 | 500 | 12 | 527 | 5.14e-134 | 399 |
MsG0480022508.01.T01 | AT4G20860 | 42.406 | 507 | 252 | 8 | 21 | 500 | 34 | 527 | 9.69e-134 | 398 |
MsG0480022508.01.T01 | AT5G44440 | 41.966 | 529 | 265 | 8 | 7 | 500 | 6 | 527 | 1.16e-133 | 398 |
MsG0480022508.01.T01 | AT5G44440 | 41.966 | 529 | 265 | 8 | 7 | 500 | 76 | 597 | 1.01e-132 | 398 |
MsG0480022508.01.T01 | AT4G20830 | 44.444 | 504 | 239 | 9 | 32 | 501 | 39 | 535 | 4.05e-132 | 394 |
MsG0480022508.01.T01 | AT4G20830 | 44.444 | 504 | 239 | 9 | 32 | 501 | 39 | 535 | 1.64e-131 | 394 |
MsG0480022508.01.T01 | AT5G44360 | 43.056 | 504 | 244 | 12 | 32 | 500 | 49 | 544 | 2.68e-130 | 390 |
MsG0480022508.01.T01 | AT5G44360 | 43.056 | 504 | 244 | 12 | 32 | 500 | 33 | 528 | 2.84e-130 | 389 |
MsG0480022508.01.T01 | AT1G30740 | 41.935 | 527 | 269 | 10 | 7 | 501 | 6 | 527 | 1.45e-122 | 369 |
MsG0480022508.01.T01 | AT1G30740 | 41.935 | 527 | 269 | 10 | 7 | 501 | 9 | 530 | 1.53e-122 | 369 |
Find 88 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACCTAATGTTGTTCAAAT+TGG | 0.228780 | 4:+73406598 | MsG0480022508.01.T01:CDS |
AAGCTGAATGTTGTTGCTTT+TGG | 0.230709 | 4:-73406027 | None:intergenic |
GGAAATTTGATGAGAAAATT+TGG | 0.258916 | 4:+73406298 | MsG0480022508.01.T01:CDS |
TTTGACATTGCCAAAACTTA+TGG | 0.263954 | 4:+73407204 | MsG0480022508.01.T01:CDS |
TGGCACATTTAACTGTTTCT+TGG | 0.267359 | 4:-73406007 | None:intergenic |
AAACTTGCTTCCATAAGTTT+TGG | 0.271849 | 4:-73407214 | None:intergenic |
AATAGATCTTTATGCAGTTT+TGG | 0.273624 | 4:-73406565 | None:intergenic |
AGTAAGGAATTCCCCGAATT+AGG | 0.285169 | 4:+73406700 | MsG0480022508.01.T01:CDS |
ACTTTGGTTCAAACCTAATT+CGG | 0.311377 | 4:-73406713 | None:intergenic |
TGACCAATTTGAACAACATT+AGG | 0.312133 | 4:-73406601 | None:intergenic |
TCTTTCATCTTTCCACCATA+TGG | 0.316468 | 4:-73406952 | None:intergenic |
ATAGATTCTAGAGCTTCTTT+AGG | 0.318699 | 4:-73406883 | None:intergenic |
TCTAGAGCTTCTTTAGGAAT+AGG | 0.321024 | 4:-73406877 | None:intergenic |
GTTATAATTGCCAAAGGTTT+CGG | 0.327951 | 4:-73405963 | None:intergenic |
GGTGGTGGTGGTGCTAGTTT+TGG | 0.331271 | 4:+73406421 | MsG0480022508.01.T01:CDS |
AAGAAGCTCTAGAATCTATA+TGG | 0.334429 | 4:+73406887 | MsG0480022508.01.T01:CDS |
CTTTGGTTCAAACCTAATTC+GGG | 0.343696 | 4:-73406712 | None:intergenic |
GGGAGGCATTCCTCAATTAT+AGG | 0.357483 | 4:+73407139 | MsG0480022508.01.T01:CDS |
CATTTCTCTGGTGGTGGGTA+TGG | 0.360817 | 4:+73406277 | MsG0480022508.01.T01:CDS |
AATTATAGGGATGCTGATAT+TGG | 0.376157 | 4:+73407153 | MsG0480022508.01.T01:CDS |
GTAGTGCAAGTTAGTTTCAT+TGG | 0.379275 | 4:+73406637 | MsG0480022508.01.T01:CDS |
GTGATTGTCTTTCAATGCCT+TGG | 0.383003 | 4:+73406734 | MsG0480022508.01.T01:CDS |
TCAAATCTCGTTACATTACT+TGG | 0.393941 | 4:-73407186 | None:intergenic |
ACGATAACCTGTGGAGTTAT+CGG | 0.397449 | 4:-73406475 | None:intergenic |
TAAATTGGTTGAGGATCCTT+TGG | 0.399190 | 4:-73406823 | None:intergenic |
TACTCCTCTTGAAGCATTGT+TGG | 0.402290 | 4:+73406795 | MsG0480022508.01.T01:CDS |
TACTATACCATGGATACAAT+GGG | 0.405654 | 4:+73405741 | None:intergenic |
ATTAGACAAGACAATTGTTA+AGG | 0.415135 | 4:-73405787 | None:intergenic |
TTCATATCTAAAGAAATTCT+CGG | 0.418836 | 4:-73407286 | None:intergenic |
GAAATTCTCGGGATCAACTT+TGG | 0.424393 | 4:-73407274 | None:intergenic |
GGTGGTCATTTCTCTGGTGG+TGG | 0.426644 | 4:+73406271 | MsG0480022508.01.T01:CDS |
TCAACAGCATGGGTTGAATC+AGG | 0.427451 | 4:+73406161 | MsG0480022508.01.T01:CDS |
TCTTTCATGGAAACTTCAAT+TGG | 0.441584 | 4:+73406450 | MsG0480022508.01.T01:CDS |
GGAGGCATTCCTCAATTATA+GGG | 0.443623 | 4:+73407140 | MsG0480022508.01.T01:CDS |
CTTATGCAATGGAATCCATA+TGG | 0.450449 | 4:+73406937 | MsG0480022508.01.T01:CDS |
TATTCTTGATAGAAAATCAA+TGG | 0.458066 | 4:+73406372 | MsG0480022508.01.T01:CDS |
GGTGCTGGTGGTCATTTCTC+TGG | 0.459504 | 4:+73406265 | MsG0480022508.01.T01:intron |
AGCAACAACACCGAAACCTT+TGG | 0.466175 | 4:+73405953 | MsG0480022508.01.T01:CDS |
CTCGGAGAATTCGAAACATA+AGG | 0.468696 | 4:-73407117 | None:intergenic |
GTTGAGAATGAGGCATTGTT+TGG | 0.470969 | 4:-73405891 | None:intergenic |
CAATTTCCCCATTGTATCCA+TGG | 0.476747 | 4:-73405748 | None:intergenic |
CATATGGATTCCATTGCATA+AGG | 0.477148 | 4:-73406936 | None:intergenic |
CAACTGATGTCGTTTACAAA+TGG | 0.490862 | 4:+73406530 | MsG0480022508.01.T01:CDS |
AGTGGCGGTCACGACTTTGA+AGG | 0.494173 | 4:+73406059 | MsG0480022508.01.T01:CDS |
GTGGTCATTTCTCTGGTGGT+GGG | 0.501321 | 4:+73406272 | MsG0480022508.01.T01:CDS |
GACTTATACAATGATCTAGT+AGG | 0.504206 | 4:-73407318 | None:intergenic |
AACAAGTCAAGTATAACAAA+AGG | 0.504620 | 4:-73406104 | None:intergenic |
AACAAGTTTCCTACTCTATG+AGG | 0.510558 | 4:-73407000 | None:intergenic |
TGCTTTACTCTAGGTGCTGG+TGG | 0.512366 | 4:+73406253 | MsG0480022508.01.T01:intron |
TCATATCTAAAGAAATTCTC+GGG | 0.512401 | 4:-73407285 | None:intergenic |
TGGGCTATAAGAGGTGGTGG+TGG | 0.518497 | 4:+73406409 | MsG0480022508.01.T01:CDS |
TTTCCTACTCTATGAGGAAA+CGG | 0.519543 | 4:-73406994 | None:intergenic |
GCTTCAAGAGGAGTACCAAT+TGG | 0.520632 | 4:-73406787 | None:intergenic |
ATTCTTGATAGAAAATCAAT+GGG | 0.522100 | 4:+73406373 | MsG0480022508.01.T01:CDS |
GTGAGAATTTCCTTATGCAA+TGG | 0.526102 | 4:+73406926 | MsG0480022508.01.T01:CDS |
GTTGTTCAAATTGGTCAAGA+GGG | 0.530168 | 4:+73406607 | MsG0480022508.01.T01:CDS |
CTACTATACCATGGATACAA+TGG | 0.530615 | 4:+73405740 | None:intergenic |
ATTGGTTCCGATAACTCCAC+AGG | 0.531147 | 4:+73406468 | MsG0480022508.01.T01:CDS |
ATATGGAAATTGATGATTGA+AGG | 0.537491 | 4:+73406904 | MsG0480022508.01.T01:CDS |
TTTACAAGAATCAACAGCAT+GGG | 0.543499 | 4:+73406151 | MsG0480022508.01.T01:CDS |
GCATTGAAAGACAATCACTT+TGG | 0.543501 | 4:-73406729 | None:intergenic |
TATCAGCATCCCTATAATTG+AGG | 0.547264 | 4:-73407149 | None:intergenic |
TGTTGTTCAAATTGGTCAAG+AGG | 0.558808 | 4:+73406606 | MsG0480022508.01.T01:CDS |
AGCATTGTTGGAAGAACCAA+AGG | 0.559301 | 4:+73406807 | MsG0480022508.01.T01:CDS |
GTTGAGGATAGTTGAGAATG+AGG | 0.563351 | 4:-73405901 | None:intergenic |
GCTGGTGGTCATTTCTCTGG+TGG | 0.564457 | 4:+73406268 | MsG0480022508.01.T01:CDS |
TGATTCAATACTTTAATCCG+TGG | 0.570353 | 4:+73407025 | MsG0480022508.01.T01:CDS |
TTTGCAGTTATAATTGCCAA+AGG | 0.570639 | 4:-73405969 | None:intergenic |
TAATTGAGGAATGCCTCCCT+CGG | 0.575705 | 4:-73407135 | None:intergenic |
TGAGGAAACGGTGTTTCTGA+TGG | 0.577426 | 4:-73406982 | None:intergenic |
GTTGAATCAGGTGCAACACT+TGG | 0.578127 | 4:+73406173 | MsG0480022508.01.T01:CDS |
TCTTCCAACAATGCTTCAAG+AGG | 0.594711 | 4:-73406799 | None:intergenic |
ACACCGTTTCCTCATAGAGT+AGG | 0.600052 | 4:+73406991 | MsG0480022508.01.T01:CDS |
AAAAGAGTGGAATTAATCCA+AGG | 0.600902 | 4:-73406751 | None:intergenic |
ATTTACAAGAATCAACAGCA+TGG | 0.603350 | 4:+73406150 | MsG0480022508.01.T01:CDS |
TTATGTTTCGAATTCTCCGA+GGG | 0.609571 | 4:+73407119 | MsG0480022508.01.T01:CDS |
TGTAAGTAACTTCAGAGACA+AGG | 0.624291 | 4:-73405866 | None:intergenic |
TGTTTCGAATTCTCCGAGGG+AGG | 0.634404 | 4:+73407122 | MsG0480022508.01.T01:CDS |
CAGCTTAGAATTCGAAGTGG+CGG | 0.641139 | 4:+73406044 | MsG0480022508.01.T01:CDS |
TTTGGTTCAAACCTAATTCG+GGG | 0.645523 | 4:-73406711 | None:intergenic |
ATGCAATGGAATCCATATGG+TGG | 0.646403 | 4:+73406940 | MsG0480022508.01.T01:CDS |
ACATTGAAAACGATAACCTG+TGG | 0.652393 | 4:-73406484 | None:intergenic |
GTAAGTAACTTCAGAGACAA+GGG | 0.668268 | 4:-73405865 | None:intergenic |
CTTATGTTTCGAATTCTCCG+AGG | 0.672859 | 4:+73407118 | MsG0480022508.01.T01:CDS |
TCAGAAGAATCATTAGACCA+CGG | 0.676978 | 4:-73407042 | None:intergenic |
GTGAAAAGGAATGTCAGTGA+AGG | 0.694179 | 4:+73406505 | MsG0480022508.01.T01:CDS |
ATTCAGCTTAGAATTCGAAG+TGG | 0.701549 | 4:+73406041 | MsG0480022508.01.T01:CDS |
ACTATACCATGGATACAATG+GGG | 0.728986 | 4:+73405742 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTTATTTTTTTGATAAAT+TGG | - | Chr4:73406841-73406860 | None:intergenic | 10.0% |
!! | ATTCTTGATAGAAAATCAAT+GGG | + | Chr4:73406373-73406392 | MsG0480022508.01.T01:CDS | 20.0% |
!! | TATTCTTGATAGAAAATCAA+TGG | + | Chr4:73406372-73406391 | MsG0480022508.01.T01:CDS | 20.0% |
!! | TTCATATCTAAAGAAATTCT+CGG | - | Chr4:73407289-73407308 | None:intergenic | 20.0% |
!!! | ACTTTTAATTTTGATGAGTA+AGG | + | Chr4:73406684-73406703 | MsG0480022508.01.T01:CDS | 20.0% |
!!! | TATTTTGTATTTTCATGTTG+AGG | - | Chr4:73405920-73405939 | None:intergenic | 20.0% |
!!! | TTTTTTTGATAAATTGGTTG+AGG | - | Chr4:73406835-73406854 | None:intergenic | 20.0% |
! | AACAAGTCAAGTATAACAAA+AGG | - | Chr4:73406107-73406126 | None:intergenic | 25.0% |
! | ATTAGACAAGACAATTGTTA+AGG | - | Chr4:73405790-73405809 | None:intergenic | 25.0% |
! | GCAAAAATTGTTGATGTTAA+GGG | + | Chr4:73406346-73406365 | MsG0480022508.01.T01:CDS | 25.0% |
! | GGAAATTTGATGAGAAAATT+TGG | + | Chr4:73406298-73406317 | MsG0480022508.01.T01:CDS | 25.0% |
! | TCATATCTAAAGAAATTCTC+GGG | - | Chr4:73407288-73407307 | None:intergenic | 25.0% |
! | TGCAAAAATTGTTGATGTTA+AGG | + | Chr4:73406345-73406364 | MsG0480022508.01.T01:CDS | 25.0% |
!! | AATAGATCTTTATGCAGTTT+TGG | - | Chr4:73406568-73406587 | None:intergenic | 25.0% |
!! | AGTTTCATTGGTCAATTTTT+AGG | + | Chr4:73406649-73406668 | MsG0480022508.01.T01:CDS | 25.0% |
!! | ATATGGAAATTGATGATTGA+AGG | + | Chr4:73406904-73406923 | MsG0480022508.01.T01:CDS | 25.0% |
!! | TTATCGTTTTCAATGTGAAA+AGG | + | Chr4:73406491-73406510 | MsG0480022508.01.T01:CDS | 25.0% |
AAAAGAGTGGAATTAATCCA+AGG | - | Chr4:73406754-73406773 | None:intergenic | 30.0% | |
AATTATAGGGATGCTGATAT+TGG | + | Chr4:73407153-73407172 | MsG0480022508.01.T01:CDS | 30.0% | |
ATTTACAAGAATCAACAGCA+TGG | + | Chr4:73406150-73406169 | MsG0480022508.01.T01:CDS | 30.0% | |
CAACCTAATGTTGTTCAAAT+TGG | + | Chr4:73406598-73406617 | MsG0480022508.01.T01:CDS | 30.0% | |
GACTTATACAATGATCTAGT+AGG | - | Chr4:73407321-73407340 | None:intergenic | 30.0% | |
GTTATAATTGCCAAAGGTTT+CGG | - | Chr4:73405966-73405985 | None:intergenic | 30.0% | |
TCAAATCTCGTTACATTACT+TGG | - | Chr4:73407189-73407208 | None:intergenic | 30.0% | |
TCTTTCATGGAAACTTCAAT+TGG | + | Chr4:73406450-73406469 | MsG0480022508.01.T01:CDS | 30.0% | |
TGACCAATTTGAACAACATT+AGG | - | Chr4:73406604-73406623 | None:intergenic | 30.0% | |
TGATTCAATACTTTAATCCG+TGG | + | Chr4:73407025-73407044 | MsG0480022508.01.T01:CDS | 30.0% | |
TTTACAAGAATCAACAGCAT+GGG | + | Chr4:73406151-73406170 | MsG0480022508.01.T01:CDS | 30.0% | |
TTTGACATTGCCAAAACTTA+TGG | + | Chr4:73407204-73407223 | MsG0480022508.01.T01:CDS | 30.0% | |
TTTGCAGTTATAATTGCCAA+AGG | - | Chr4:73405972-73405991 | None:intergenic | 30.0% | |
! | AACGTCATGTGAATTTTTCA+AGG | + | Chr4:73407073-73407092 | MsG0480022508.01.T01:CDS | 30.0% |
! | ACTTTGGTTCAAACCTAATT+CGG | - | Chr4:73406716-73406735 | None:intergenic | 30.0% |
!! | AAACTTGCTTCCATAAGTTT+TGG | - | Chr4:73407217-73407236 | None:intergenic | 30.0% |
!! | AAGAAGCTCTAGAATCTATA+TGG | + | Chr4:73406887-73406906 | MsG0480022508.01.T01:CDS | 30.0% |
!! | ATAGATTCTAGAGCTTCTTT+AGG | - | Chr4:73406886-73406905 | None:intergenic | 30.0% |
!! | TATGGAAGCAAGTTTTTCAA+AGG | + | Chr4:73407222-73407241 | MsG0480022508.01.T01:CDS | 30.0% |
!!! | AATGGGAGAAGATCTTTTTT+GGG | + | Chr4:73406390-73406409 | MsG0480022508.01.T01:CDS | 30.0% |
!!! | AATTCCACTCTTTTTTGGTA+TGG | + | Chr4:73406760-73406779 | MsG0480022508.01.T01:CDS | 30.0% |
!!! | GGATTAATTCCACTCTTTTT+TGG | + | Chr4:73406755-73406774 | MsG0480022508.01.T01:CDS | 30.0% |
!!! | GTTTTGGTGTTATTCTTTCA+TGG | + | Chr4:73406437-73406456 | MsG0480022508.01.T01:CDS | 30.0% |
AACAAGTTTCCTACTCTATG+AGG | - | Chr4:73407003-73407022 | None:intergenic | 35.0% | |
AATTGGTCAAGAGGGAAAAA+AGG | + | Chr4:73406615-73406634 | MsG0480022508.01.T01:CDS | 35.0% | |
ACATTGAAAACGATAACCTG+TGG | - | Chr4:73406487-73406506 | None:intergenic | 35.0% | |
ATTCAGCTTAGAATTCGAAG+TGG | + | Chr4:73406041-73406060 | MsG0480022508.01.T01:CDS | 35.0% | |
CATATGGATTCCATTGCATA+AGG | - | Chr4:73406939-73406958 | None:intergenic | 35.0% | |
CTTATGCAATGGAATCCATA+TGG | + | Chr4:73406937-73406956 | MsG0480022508.01.T01:CDS | 35.0% | |
GCATTGAAAGACAATCACTT+TGG | - | Chr4:73406732-73406751 | None:intergenic | 35.0% | |
GTAAGTAACTTCAGAGACAA+GGG | - | Chr4:73405868-73405887 | None:intergenic | 35.0% | |
GTGAGAATTTCCTTATGCAA+TGG | + | Chr4:73406926-73406945 | MsG0480022508.01.T01:CDS | 35.0% | |
GTTGTTCAAATTGGTCAAGA+GGG | + | Chr4:73406607-73406626 | MsG0480022508.01.T01:CDS | 35.0% | |
TAAATTGGTTGAGGATCCTT+TGG | - | Chr4:73406826-73406845 | None:intergenic | 35.0% | |
TATCAGCATCCCTATAATTG+AGG | - | Chr4:73407152-73407171 | None:intergenic | 35.0% | |
TCAGAAGAATCATTAGACCA+CGG | - | Chr4:73407045-73407064 | None:intergenic | 35.0% | |
TCTTTCATCTTTCCACCATA+TGG | - | Chr4:73406955-73406974 | None:intergenic | 35.0% | |
TGTAAGTAACTTCAGAGACA+AGG | - | Chr4:73405869-73405888 | None:intergenic | 35.0% | |
TGTTGTTCAAATTGGTCAAG+AGG | + | Chr4:73406606-73406625 | MsG0480022508.01.T01:CDS | 35.0% | |
TTATGTTTCGAATTCTCCGA+GGG | + | Chr4:73407119-73407138 | MsG0480022508.01.T01:CDS | 35.0% | |
TTTCCTACTCTATGAGGAAA+CGG | - | Chr4:73406997-73407016 | None:intergenic | 35.0% | |
! | CAACTGATGTCGTTTACAAA+TGG | + | Chr4:73406530-73406549 | MsG0480022508.01.T01:CDS | 35.0% |
! | CTTTGGTTCAAACCTAATTC+GGG | - | Chr4:73406715-73406734 | None:intergenic | 35.0% |
! | GTAGTGCAAGTTAGTTTCAT+TGG | + | Chr4:73406637-73406656 | MsG0480022508.01.T01:CDS | 35.0% |
! | TCTAGAGCTTCTTTAGGAAT+AGG | - | Chr4:73406880-73406899 | None:intergenic | 35.0% |
! | TGGCACATTTAACTGTTTCT+TGG | - | Chr4:73406010-73406029 | None:intergenic | 35.0% |
! | TTTGGTTCAAACCTAATTCG+GGG | - | Chr4:73406714-73406733 | None:intergenic | 35.0% |
!!! | AAGCTGAATGTTGTTGCTTT+TGG | - | Chr4:73406030-73406049 | None:intergenic | 35.0% |
!!! | CAATGGGAGAAGATCTTTTT+TGG | + | Chr4:73406389-73406408 | MsG0480022508.01.T01:CDS | 35.0% |
!!! | CTTGTTGCTTTTCTTTGCAA+TGG | - | Chr4:73406212-73406231 | None:intergenic | 35.0% |
!!! | GATCTTTTTTGGGCTATAAG+AGG | + | Chr4:73406400-73406419 | MsG0480022508.01.T01:CDS | 35.0% |
!!! | GGGGAAATTGTTTTTTCTCA+TGG | + | Chr4:73405761-73405780 | MsG0480022508.01.T01:CDS | 35.0% |
ACGATAACCTGTGGAGTTAT+CGG | - | Chr4:73406478-73406497 | None:intergenic | 40.0% | |
AGCATTGTTGGAAGAACCAA+AGG | + | Chr4:73406807-73406826 | MsG0480022508.01.T01:CDS | 40.0% | |
AGTAAGGAATTCCCCGAATT+AGG | + | Chr4:73406700-73406719 | MsG0480022508.01.T01:CDS | 40.0% | |
ATGCAATGGAATCCATATGG+TGG | + | Chr4:73406940-73406959 | MsG0480022508.01.T01:CDS | 40.0% | |
CTCGGAGAATTCGAAACATA+AGG | - | Chr4:73407120-73407139 | None:intergenic | 40.0% | |
CTGACCATACCAAAAAAGAG+TGG | - | Chr4:73406767-73406786 | None:intergenic | 40.0% | |
CTTATGTTTCGAATTCTCCG+AGG | + | Chr4:73407118-73407137 | MsG0480022508.01.T01:CDS | 40.0% | |
GAAATTCTCGGGATCAACTT+TGG | - | Chr4:73407277-73407296 | None:intergenic | 40.0% | |
GTGAAAAGGAATGTCAGTGA+AGG | + | Chr4:73406505-73406524 | MsG0480022508.01.T01:CDS | 40.0% | |
GTGATTGTCTTTCAATGCCT+TGG | + | Chr4:73406734-73406753 | MsG0480022508.01.T01:CDS | 40.0% | |
GTTGAGGATAGTTGAGAATG+AGG | - | Chr4:73405904-73405923 | None:intergenic | 40.0% | |
TCTTCCAACAATGCTTCAAG+AGG | - | Chr4:73406802-73406821 | None:intergenic | 40.0% | |
! | TTTTGGTATGGTCAGCCAAT+TGG | + | Chr4:73406772-73406791 | MsG0480022508.01.T01:CDS | 40.0% |
!! | GGAGGCATTCCTCAATTATA+GGG | + | Chr4:73407140-73407159 | MsG0480022508.01.T01:CDS | 40.0% |
!! | GTTGAGAATGAGGCATTGTT+TGG | - | Chr4:73405894-73405913 | None:intergenic | 40.0% |
!! | TACTCCTCTTGAAGCATTGT+TGG | + | Chr4:73406795-73406814 | MsG0480022508.01.T01:CDS | 40.0% |
!!! | CTTTTTTGGGCTATAAGAGG+TGG | + | Chr4:73406403-73406422 | MsG0480022508.01.T01:CDS | 40.0% |
ACACCGTTTCCTCATAGAGT+AGG | + | Chr4:73406991-73407010 | MsG0480022508.01.T01:CDS | 45.0% | |
AGCAACAACACCGAAACCTT+TGG | + | Chr4:73405953-73405972 | MsG0480022508.01.T01:CDS | 45.0% | |
CAGCTTAGAATTCGAAGTGG+CGG | + | Chr4:73406044-73406063 | MsG0480022508.01.T01:CDS | 45.0% | |
GTTGAATCAGGTGCAACACT+TGG | + | Chr4:73406173-73406192 | MsG0480022508.01.T01:CDS | 45.0% | |
TAATTGAGGAATGCCTCCCT+CGG | - | Chr4:73407138-73407157 | None:intergenic | 45.0% | |
! | AACAAGCTTGCTTTCCCATC+TGG | + | Chr4:73406226-73406245 | MsG0480022508.01.T01:intron | 45.0% |
! | ACAAGCTTGCTTTCCCATCT+GGG | + | Chr4:73406227-73406246 | MsG0480022508.01.T01:intron | 45.0% |
! | ATTGGTTCCGATAACTCCAC+AGG | + | Chr4:73406468-73406487 | MsG0480022508.01.T01:CDS | 45.0% |
! | TCAACAGCATGGGTTGAATC+AGG | + | Chr4:73406161-73406180 | MsG0480022508.01.T01:CDS | 45.0% |
! | TGAGGAAACGGTGTTTCTGA+TGG | - | Chr4:73406985-73407004 | None:intergenic | 45.0% |
! | TTTTGGGCTATAAGAGGTGG+TGG | + | Chr4:73406406-73406425 | MsG0480022508.01.T01:CDS | 45.0% |
!! | GCTTCAAGAGGAGTACCAAT+TGG | - | Chr4:73406790-73406809 | None:intergenic | 45.0% |
!! | GGGAGGCATTCCTCAATTAT+AGG | + | Chr4:73407139-73407158 | MsG0480022508.01.T01:CDS | 45.0% |
AGAGTAAAGCAGACCCCAGA+TGG | - | Chr4:73406244-73406263 | None:intergenic | 50.0% | |
GAGTAAAGCAGACCCCAGAT+GGG | - | Chr4:73406243-73406262 | None:intergenic | 50.0% | |
GTCTGCTTTACTCTAGGTGC+TGG | + | Chr4:73406250-73406269 | MsG0480022508.01.T01:intron | 50.0% | |
GTGGTCATTTCTCTGGTGGT+GGG | + | Chr4:73406272-73406291 | MsG0480022508.01.T01:CDS | 50.0% | |
TGTTTCGAATTCTCCGAGGG+AGG | + | Chr4:73407122-73407141 | MsG0480022508.01.T01:CDS | 50.0% | |
! | CAAGCTTGCTTTCCCATCTG+GGG | + | Chr4:73406228-73406247 | MsG0480022508.01.T01:intron | 50.0% |
! | TCTGGGGTCTGCTTTACTCT+AGG | + | Chr4:73406244-73406263 | MsG0480022508.01.T01:intron | 50.0% |
!! | CATTTCTCTGGTGGTGGGTA+TGG | + | Chr4:73406277-73406296 | MsG0480022508.01.T01:CDS | 50.0% |
!! | TGCTTTACTCTAGGTGCTGG+TGG | + | Chr4:73406253-73406272 | MsG0480022508.01.T01:intron | 50.0% |
AGTGGCGGTCACGACTTTGA+AGG | + | Chr4:73406059-73406078 | MsG0480022508.01.T01:CDS | 55.0% | |
GCTGGTGGTCATTTCTCTGG+TGG | + | Chr4:73406268-73406287 | MsG0480022508.01.T01:CDS | 55.0% | |
GGTGGTCATTTCTCTGGTGG+TGG | + | Chr4:73406271-73406290 | MsG0480022508.01.T01:CDS | 55.0% | |
! | TGGGCTATAAGAGGTGGTGG+TGG | + | Chr4:73406409-73406428 | MsG0480022508.01.T01:CDS | 55.0% |
!! | GGTGCTGGTGGTCATTTCTC+TGG | + | Chr4:73406265-73406284 | MsG0480022508.01.T01:intron | 55.0% |
!!! | GGTGGTGGTGGTGCTAGTTT+TGG | + | Chr4:73406421-73406440 | MsG0480022508.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 73405750 | 73407347 | 73405750 | ID=MsG0480022508.01;Name=MsG0480022508.01 |
Chr4 | mRNA | 73405750 | 73407347 | 73405750 | ID=MsG0480022508.01.T01;Parent=MsG0480022508.01;Name=MsG0480022508.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|508 |
Chr4 | exon | 73405750 | 73406194 | 73405750 | ID=MsG0480022508.01.T01:exon:5347;Parent=MsG0480022508.01.T01 |
Chr4 | exon | 73406266 | 73407347 | 73406266 | ID=MsG0480022508.01.T01:exon:5348;Parent=MsG0480022508.01.T01 |
Chr4 | CDS | 73405750 | 73406194 | 73405750 | ID=MsG0480022508.01.T01:cds;Parent=MsG0480022508.01.T01 |
Chr4 | CDS | 73406266 | 73407347 | 73406266 | ID=MsG0480022508.01.T01:cds;Parent=MsG0480022508.01.T01 |
Gene Sequence |
Protein sequence |