Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023596.01.T01 | XP_013446985.1 | 93.091 | 275 | 18 | 1 | 51 | 325 | 48 | 321 | 8.28E-140 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023596.01.T01 | Q9C5D3 | 58.451 | 284 | 103 | 4 | 55 | 325 | 74 | 355 | 9.62E-75 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023596.01.T01 | A0A072TUA8 | 93.091 | 275 | 18 | 1 | 51 | 325 | 48 | 321 | 3.95e-140 | 408 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000575.01 | MsG0480023596.01 | 0.805623 | 1.220619e-49 | 6.488572e-47 |
| MsG0180000824.01 | MsG0480023596.01 | 0.800112 | 1.678917e-48 | 7.753019e-46 |
| MsG0180003257.01 | MsG0480023596.01 | 0.804784 | 1.829298e-49 | 9.516843e-47 |
| MsG0180003337.01 | MsG0480023596.01 | 0.811780 | 5.897999e-51 | 3.683977e-48 |
| MsG0180003864.01 | MsG0480023596.01 | 0.812068 | 5.105235e-51 | 3.213636e-48 |
| MsG0180004050.01 | MsG0480023596.01 | 0.804519 | 2.077484e-49 | 1.073350e-46 |
| MsG0180005388.01 | MsG0480023596.01 | -0.840248 | 9.747496e-58 | 1.380358e-54 |
| MsG0180005575.01 | MsG0480023596.01 | 0.805677 | 1.189093e-49 | 6.329926e-47 |
| MsG0280010554.01 | MsG0480023596.01 | 0.811835 | 5.738241e-51 | 3.589394e-48 |
| MsG0280011003.01 | MsG0480023596.01 | 0.844623 | 6.740731e-59 | 1.094598e-55 |
| MsG0280011013.01 | MsG0480023596.01 | 0.834017 | 3.821211e-56 | 4.477683e-53 |
| MsG0280011014.01 | MsG0480023596.01 | 0.813112 | 3.017658e-51 | 1.953096e-48 |
| MsG0380012471.01 | MsG0480023596.01 | 0.814982 | 1.167222e-51 | 7.947806e-49 |
| MsG0380014489.01 | MsG0480023596.01 | 0.803097 | 4.100755e-49 | 2.042660e-46 |
| MsG0480018641.01 | MsG0480023596.01 | 0.811472 | 6.881198e-51 | 4.263520e-48 |
| MsG0480018894.01 | MsG0480023596.01 | 0.801119 | 1.046371e-48 | 4.957241e-46 |
| MsG0480020495.01 | MsG0480023596.01 | 0.800425 | 1.450131e-48 | 6.750187e-46 |
| MsG0480021464.01 | MsG0480023596.01 | 0.839049 | 1.998831e-57 | 2.727469e-54 |
| MsG0480021842.01 | MsG0480023596.01 | 0.810772 | 9.760554e-51 | 5.936404e-48 |
| MsG0480022481.01 | MsG0480023596.01 | 0.843054 | 1.773371e-58 | 2.740847e-55 |
| MsG0480022614.01 | MsG0480023596.01 | 0.801463 | 8.899165e-49 | 4.252525e-46 |
| MsG0480022696.01 | MsG0480023596.01 | 0.825837 | 3.769363e-54 | 3.475160e-51 |
| MsG0480022790.01 | MsG0480023596.01 | 0.815087 | 1.106531e-51 | 7.555712e-49 |
| MsG0480023596.01 | MsG0480023600.01 | 0.810081 | 1.376001e-50 | 8.216923e-48 |
| MsG0480023596.01 | MsG0480023771.01 | 0.823009 | 1.744290e-53 | 1.483892e-50 |
| MsG0480023596.01 | MsG0580024353.01 | 0.808550 | 2.931547e-50 | 1.681103e-47 |
| MsG0480023596.01 | MsG0580024981.01 | 0.817917 | 2.570793e-52 | 1.896956e-49 |
| MsG0480023596.01 | MsG0580026157.01 | 0.856319 | 3.486413e-62 | 8.288111e-59 |
| MsG0480023596.01 | MsG0680035475.01 | 0.800467 | 1.421880e-48 | 6.625317e-46 |
| MsG0480023596.01 | MsG0780036663.01 | 0.831177 | 1.935043e-55 | 2.083557e-52 |
| MsG0480023596.01 | MsG0780037240.01 | 0.801880 | 7.307655e-49 | 3.529312e-46 |
| MsG0480023596.01 | MsG0780038909.01 | 0.800231 | 1.588354e-48 | 7.356898e-46 |
| MsG0480023596.01 | MsG0780039137.01 | 0.825508 | 4.512372e-54 | 4.121032e-51 |
| MsG0480023596.01 | MsG0780039845.01 | 0.802061 | 6.708542e-49 | 3.254735e-46 |
| MsG0480023596.01 | MsG0780040743.01 | 0.800334 | 1.513304e-48 | 7.027927e-46 |
| MsG0480023596.01 | MsG0780040841.01 | 0.829360 | 5.376145e-55 | 5.490485e-52 |
| MsG0480023596.01 | MsG0780040845.01 | 0.807519 | 4.857366e-50 | 2.711260e-47 |
| MsG0480023596.01 | MsG0780041392.01 | 0.821850 | 3.243022e-53 | 2.669349e-50 |
| MsG0480023596.01 | MsG0780041535.01 | 0.811696 | 6.152387e-51 | 3.834216e-48 |
| MsG0480023596.01 | MsG0780041796.01 | 0.840330 | 9.279074e-58 | 1.317232e-54 |
| MsG0480023596.01 | MsG0880041860.01 | 0.804703 | 1.901695e-49 | 9.872534e-47 |
| MsG0480023596.01 | MsG0880042552.01 | 0.803094 | 4.108141e-49 | 2.046131e-46 |
| MsG0480023596.01 | MsG0880042779.01 | 0.808598 | 2.862479e-50 | 1.643528e-47 |
| MsG0480023596.01 | MsG0880044782.01 | 0.831509 | 1.603841e-55 | 1.744135e-52 |
| MsG0480023596.01 | MsG0880045145.01 | 0.832777 | 7.788138e-56 | 8.793554e-53 |
| MsG0480023596.01 | MsG0880045166.01 | 0.809979 | 1.447863e-50 | 8.623436e-48 |
| MsG0480023596.01 | MsG0880045965.01 | 0.807587 | 4.698557e-50 | 2.627032e-47 |
| MsG0380016389.01 | MsG0480023596.01 | 0.800072 | 1.710896e-48 | 7.892728e-46 |
| MsG0380017039.01 | MsG0480023596.01 | 0.817666 | 2.929331e-52 | 2.146697e-49 |
| MsG0380017382.01 | MsG0480023596.01 | 0.814829 | 1.262125e-51 | 8.558468e-49 |
| MsG0280007196.01 | MsG0480023596.01 | 0.813169 | 2.932472e-51 | 1.900942e-48 |
| MsG0280007321.01 | MsG0480023596.01 | 0.828067 | 1.104403e-54 | 1.085967e-51 |
| MsG0280008909.01 | MsG0480023596.01 | 0.800716 | 1.264782e-48 | 5.930697e-46 |
| MsG0280010002.01 | MsG0480023596.01 | 0.810213 | 1.288994e-50 | 7.723610e-48 |
| MsG0280010176.01 | MsG0480023596.01 | 0.800459 | 1.427365e-48 | 6.649496e-46 |
| MsG0280010489.01 | MsG0480023596.01 | 0.821447 | 4.017688e-53 | 3.269411e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023596.01.T01 | MTR_8g096700 | 93.091 | 275 | 18 | 1 | 51 | 325 | 48 | 321 | 1.00e-143 | 408 |
| MsG0480023596.01.T01 | MTR_3g099030 | 53.137 | 271 | 88 | 6 | 55 | 325 | 35 | 266 | 5.25e-78 | 239 |
| MsG0480023596.01.T01 | MTR_3g099040 | 51.042 | 288 | 104 | 4 | 55 | 325 | 35 | 302 | 6.36e-75 | 233 |
| MsG0480023596.01.T01 | MTR_2g026685 | 49.084 | 273 | 104 | 5 | 53 | 325 | 32 | 269 | 3.23e-54 | 178 |
| MsG0480023596.01.T01 | MTR_2g026685 | 49.084 | 273 | 104 | 5 | 53 | 325 | 33 | 270 | 3.32e-54 | 178 |
| MsG0480023596.01.T01 | MTR_2g026685 | 47.727 | 264 | 103 | 5 | 62 | 325 | 1 | 229 | 4.66e-50 | 166 |
| MsG0480023596.01.T01 | MTR_4g006650 | 68.000 | 125 | 37 | 1 | 55 | 179 | 168 | 289 | 8.11e-48 | 163 |
| MsG0480023596.01.T01 | MTR_3g435930 | 35.165 | 273 | 111 | 6 | 56 | 325 | 28 | 237 | 5.35e-40 | 140 |
| MsG0480023596.01.T01 | MTR_3g093020 | 34.727 | 311 | 162 | 9 | 22 | 324 | 6 | 283 | 3.29e-32 | 121 |
| MsG0480023596.01.T01 | MTR_4g057765 | 30.686 | 277 | 163 | 5 | 57 | 325 | 69 | 324 | 7.44e-31 | 119 |
| MsG0480023596.01.T01 | MTR_8g010540 | 34.386 | 285 | 149 | 11 | 40 | 324 | 18 | 264 | 6.25e-28 | 109 |
| MsG0480023596.01.T01 | MTR_5g069180 | 36.810 | 163 | 91 | 2 | 57 | 219 | 56 | 206 | 1.22e-27 | 110 |
| MsG0480023596.01.T01 | MTR_1g063210 | 33.235 | 340 | 175 | 9 | 29 | 325 | 3 | 333 | 1.59e-27 | 110 |
| MsG0480023596.01.T01 | MTR_2g095480 | 35.329 | 167 | 103 | 3 | 53 | 219 | 64 | 225 | 7.54e-25 | 102 |
| MsG0480023596.01.T01 | MTR_0041s0140 | 33.333 | 213 | 110 | 4 | 46 | 235 | 5 | 208 | 1.17e-20 | 89.7 |
| MsG0480023596.01.T01 | MTR_7g101930 | 33.333 | 213 | 110 | 4 | 46 | 235 | 5 | 208 | 1.49e-20 | 91.3 |
| MsG0480023596.01.T01 | MTR_8g018747 | 50.000 | 62 | 31 | 0 | 158 | 219 | 23 | 84 | 8.21e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023596.01.T01 | AT5G50740 | 50.000 | 310 | 128 | 5 | 16 | 325 | 1 | 283 | 4.39e-81 | 248 |
| MsG0480023596.01.T01 | AT5G50740 | 50.000 | 310 | 128 | 5 | 16 | 325 | 1 | 283 | 4.39e-81 | 248 |
| MsG0480023596.01.T01 | AT5G50740 | 50.000 | 306 | 126 | 5 | 20 | 325 | 12 | 290 | 8.44e-77 | 237 |
| MsG0480023596.01.T01 | AT5G63530 | 58.099 | 284 | 104 | 4 | 55 | 325 | 59 | 340 | 4.09e-76 | 237 |
| MsG0480023596.01.T01 | AT5G63530 | 58.451 | 284 | 103 | 4 | 55 | 325 | 74 | 355 | 9.81e-76 | 236 |
| MsG0480023596.01.T01 | AT3G02960 | 39.114 | 271 | 104 | 6 | 55 | 325 | 37 | 246 | 1.28e-49 | 166 |
| MsG0480023596.01.T01 | AT5G50740 | 55.758 | 165 | 58 | 2 | 16 | 180 | 1 | 150 | 9.35e-45 | 150 |
| MsG0480023596.01.T01 | AT5G50740 | 55.280 | 161 | 57 | 2 | 20 | 180 | 12 | 157 | 1.12e-40 | 140 |
| MsG0480023596.01.T01 | AT5G24580 | 32.979 | 282 | 155 | 6 | 56 | 324 | 58 | 318 | 2.66e-31 | 120 |
| MsG0480023596.01.T01 | AT5G24580 | 32.979 | 282 | 155 | 6 | 56 | 324 | 58 | 318 | 2.66e-31 | 120 |
| MsG0480023596.01.T01 | AT5G24580 | 32.979 | 282 | 155 | 6 | 56 | 324 | 57 | 317 | 2.95e-31 | 120 |
| MsG0480023596.01.T01 | AT5G03380 | 35.926 | 270 | 134 | 8 | 29 | 267 | 3 | 264 | 2.99e-28 | 113 |
| MsG0480023596.01.T01 | AT5G24580 | 31.915 | 282 | 155 | 7 | 56 | 324 | 58 | 315 | 3.80e-28 | 111 |
| MsG0480023596.01.T01 | AT2G36950 | 31.454 | 337 | 162 | 9 | 56 | 325 | 52 | 386 | 2.05e-27 | 110 |
| MsG0480023596.01.T01 | AT5G03380 | 35.270 | 241 | 121 | 6 | 58 | 267 | 1 | 237 | 2.43e-25 | 104 |
| MsG0480023596.01.T01 | AT5G60800 | 35.252 | 278 | 150 | 6 | 56 | 325 | 28 | 283 | 2.55e-22 | 95.1 |
| MsG0480023596.01.T01 | AT5G60800 | 34.892 | 278 | 151 | 6 | 56 | 325 | 28 | 283 | 3.77e-21 | 92.0 |
| MsG0480023596.01.T01 | AT5G24580 | 31.076 | 251 | 139 | 6 | 87 | 324 | 2 | 231 | 5.38e-20 | 87.4 |
| MsG0480023596.01.T01 | AT1G29000 | 33.333 | 165 | 104 | 3 | 57 | 219 | 18 | 178 | 8.61e-19 | 85.5 |
| MsG0480023596.01.T01 | AT1G29000 | 33.333 | 165 | 104 | 3 | 57 | 219 | 18 | 178 | 8.61e-19 | 85.5 |
| MsG0480023596.01.T01 | AT2G28090 | 29.907 | 214 | 136 | 3 | 39 | 250 | 14 | 215 | 1.23e-16 | 78.6 |
Find 59 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACTTTAAGCACAATTTC+TGG | 0.185344 | 4:+87415949 | None:intergenic |
| TCTTGTTCTGAAGGTGGTTT+AGG | 0.196858 | 4:+87415658 | None:intergenic |
| TCTCACAAGGTTGTTGTTAA+AGG | 0.201668 | 4:-87415760 | MsG0480023596.01.T01:CDS |
| TCTTCGTCTTTGGTTTCTTT+TGG | 0.203283 | 4:+87414943 | None:intergenic |
| GGTAATGATAAGGGTAATAT+TGG | 0.277814 | 4:-87414643 | MsG0480023596.01.T01:three_prime_UTR |
| TAAGGGTAATATTGGAATTA+TGG | 0.284369 | 4:-87414635 | MsG0480023596.01.T01:three_prime_UTR |
| CTTGTTCTGAAGGTGGTTTA+GGG | 0.292396 | 4:+87415659 | None:intergenic |
| TCCTCTACTTTCGTTTCCTC+TGG | 0.374047 | 4:+87416078 | None:intergenic |
| AGGTGGTGCAGAAGAAGTTA+AGG | 0.374215 | 4:-87414806 | MsG0480023596.01.T01:CDS |
| ATGATAATGATAATGAAATC+TGG | 0.375338 | 4:-87414593 | MsG0480023596.01.T01:three_prime_UTR |
| AGCTGCAGCTGCAGCTGCAG+AGG | 0.381633 | 4:-87414857 | MsG0480023596.01.T01:CDS |
| GGCACATCTTACCCAGGATA+TGG | 0.400133 | 4:+87414563 | None:intergenic |
| TACATGATAGAACAAGCATT+TGG | 0.401152 | 4:+87414673 | None:intergenic |
| TCTTTCTTCGGTGGTTCCTC+TGG | 0.408707 | 4:+87416048 | None:intergenic |
| ACTCTTTCAAGAACCTTCAA+TGG | 0.419505 | 4:+87415724 | None:intergenic |
| GCTGCAGCTGCAGCTGCAGA+GGG | 0.436837 | 4:-87414856 | MsG0480023596.01.T01:CDS |
| GAATATGTTTACAAGAGAAC+TGG | 0.441360 | 4:-87415012 | MsG0480023596.01.T01:CDS |
| GATCAGAAAGGGAGTGGTGA+AGG | 0.441866 | 4:-87414895 | MsG0480023596.01.T01:CDS |
| TCTGGGTGAAAGCCATATCC+TGG | 0.459053 | 4:-87414575 | MsG0480023596.01.T01:three_prime_UTR |
| AGGAGTTGTATCAGCTGAAC+CGG | 0.461209 | 4:-87415091 | MsG0480023596.01.T01:CDS |
| AAAATTTGAGGAGGGTAAGC+TGG | 0.466832 | 4:+87414709 | None:intergenic |
| GTAACTTCCTTAGATTCCTC+CGG | 0.468732 | 4:+87415976 | None:intergenic |
| AAAGTTCGTCGTTCACTCAA+AGG | 0.473903 | 4:-87415901 | MsG0480023596.01.T01:CDS |
| ACTAGTGAGTTCTTCAGATC+CGG | 0.476586 | 4:+87415072 | None:intergenic |
| CCACCTCCTCCATCACCACT+TGG | 0.479378 | 4:+87414823 | None:intergenic |
| GAAAGGGAGTGGTGAAGGAG+AGG | 0.503599 | 4:-87414890 | MsG0480023596.01.T01:CDS |
| GAAAGAGAAACCTAAGCCAC+AGG | 0.507799 | 4:-87415620 | MsG0480023596.01.T01:CDS |
| GATGGAAAACCAAGTGGTGA+TGG | 0.509668 | 4:-87414832 | MsG0480023596.01.T01:CDS |
| TGCAGAAGAAGTTAAGGTGG+TGG | 0.510388 | 4:-87414800 | MsG0480023596.01.T01:CDS |
| TCTGAAGGTGGTTTAGGGAT+CGG | 0.522573 | 4:+87415664 | None:intergenic |
| GCTGCAGCTGCAGAGGGAGA+TGG | 0.525345 | 4:-87414850 | MsG0480023596.01.T01:CDS |
| ATTAATGCAATGCAATGGTA+AGG | 0.528189 | 4:-87416571 | None:intergenic |
| TGATAATGATAATGAAATCT+GGG | 0.533220 | 4:-87414592 | MsG0480023596.01.T01:three_prime_UTR |
| GGAAGAAAAGAAAGCTGAAG+AGG | 0.548605 | 4:-87415599 | MsG0480023596.01.T01:intron |
| AACTCACTAGTGACAGTGAA+AGG | 0.549081 | 4:-87415060 | MsG0480023596.01.T01:CDS |
| AAAGTCTTCATGCATTGTGA+AGG | 0.559957 | 4:-87415934 | MsG0480023596.01.T01:CDS |
| TAAAACTCCGTACCATACCT+TGG | 0.562455 | 4:+87414745 | None:intergenic |
| AGAATCACTATCATAACCTT+AGG | 0.564388 | 4:+87415487 | None:intergenic |
| TAATCCACCAAGGTATGGTA+CGG | 0.565997 | 4:-87414752 | MsG0480023596.01.T01:CDS |
| CATCACTGAAAATTTGAGGA+GGG | 0.566558 | 4:+87414701 | None:intergenic |
| TGGTGCAGAAGAAGTTAAGG+TGG | 0.570601 | 4:-87414803 | MsG0480023596.01.T01:CDS |
| CCAAGTGGTGATGGAGGAGG+TGG | 0.579532 | 4:-87414823 | MsG0480023596.01.T01:CDS |
| AAACCAAGTGGTGATGGAGG+AGG | 0.582262 | 4:-87414826 | MsG0480023596.01.T01:CDS |
| AACTCCGTACCATACCTTGG+TGG | 0.588756 | 4:+87414748 | None:intergenic |
| AGACGCATTGAGAAAATCAA+AGG | 0.589980 | 4:-87415421 | MsG0480023596.01.T01:intron |
| TGAGGAGGGTAAGCTGGACC+AGG | 0.590722 | 4:+87414715 | None:intergenic |
| TACTGCAGGGAAAAGTACAT+AGG | 0.593196 | 4:+87414541 | None:intergenic |
| GGAAAACCAAGTGGTGATGG+AGG | 0.597768 | 4:-87414829 | MsG0480023596.01.T01:CDS |
| ACTGCAGGGAAAAGTACATA+GGG | 0.600268 | 4:+87414542 | None:intergenic |
| ACCAGAGGAAACGAAAGTAG+AGG | 0.601453 | 4:-87416079 | MsG0480023596.01.T01:CDS |
| CTGGGTGAAAGCCATATCCT+GGG | 0.602074 | 4:-87414574 | MsG0480023596.01.T01:three_prime_UTR |
| TACTGATTGCAAATCTCACA+AGG | 0.619184 | 4:-87415773 | MsG0480023596.01.T01:CDS |
| TCATCACTGAAAATTTGAGG+AGG | 0.625780 | 4:+87414700 | None:intergenic |
| ATATTATTAATGCAATGCAA+TGG | 0.644424 | 4:-87416576 | None:intergenic |
| AGGTTCTTGAAAGAGTTCAG+AGG | 0.645167 | 4:-87415717 | MsG0480023596.01.T01:CDS |
| ACTTTAAGCACAATTTCTGG+CGG | 0.689016 | 4:+87415952 | None:intergenic |
| ACATAGGGCACATCTTACCC+AGG | 0.692217 | 4:+87414557 | None:intergenic |
| ATAGGAAGAAAAGAAACCAG+AGG | 0.703898 | 4:-87416094 | MsG0480023596.01.T01:intron |
| GAGGGAGATGGAAAACCAAG+TGG | 0.706478 | 4:-87414838 | MsG0480023596.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTATTATTATTTT+TGG | + | Chr4:87414580-87414599 | None:intergenic | 0.0% |
| !!! | CATTTTAATAATATTGTTTC+TGG | - | Chr4:87414848-87414867 | MsG0480023596.01.T01:CDS | 15.0% |
| !!! | TAAAAATTTGGTAATGATAA+GGG | - | Chr4:87416338-87416357 | MsG0480023596.01.T01:intron | 15.0% |
| !!! | TTACTTTTATTTCATTTACT+TGG | - | Chr4:87415636-87415655 | MsG0480023596.01.T01:CDS | 15.0% |
| !! | CTTGATAAAATATTTGTAAG+TGG | - | Chr4:87415810-87415829 | MsG0480023596.01.T01:intron | 20.0% |
| !! | TAATGATTAATTGTTTGTGA+TGG | - | Chr4:87415169-87415188 | MsG0480023596.01.T01:intron | 20.0% |
| !! | TGTTCTATCATGTAAAAATT+TGG | - | Chr4:87416326-87416345 | MsG0480023596.01.T01:intron | 20.0% |
| !! | TTAAAATTATATTCACATGC+AGG | - | Chr4:87415879-87415898 | MsG0480023596.01.T01:intron | 20.0% |
| !! | TTTATTTCATTTACTTGGTT+TGG | - | Chr4:87415641-87415660 | MsG0480023596.01.T01:CDS | 20.0% |
| !!! | AATATTATTTTAATCCACCA+AGG | - | Chr4:87416228-87416247 | MsG0480023596.01.T01:intron | 20.0% |
| !!! | AGAAAAAAAGTGTAAAGAAA+AGG | + | Chr4:87415136-87415155 | None:intergenic | 20.0% |
| !!! | ATGATAATGATAATGAAATC+TGG | - | Chr4:87416397-87416416 | MsG0480023596.01.T01:intron | 20.0% |
| !!! | CTTTTTTTGCCTTAAAATTT+CGG | + | Chr4:87414669-87414688 | None:intergenic | 20.0% |
| !!! | GTAAAAATTTGGTAATGATA+AGG | - | Chr4:87416337-87416356 | MsG0480023596.01.T01:intron | 20.0% |
| !!! | TGATAATGATAATGAAATCT+GGG | - | Chr4:87416398-87416417 | MsG0480023596.01.T01:intron | 20.0% |
| !!! | TTAAAAACACCGAAATTTTA+AGG | - | Chr4:87414657-87414676 | MsG0480023596.01.T01:exon | 20.0% |
| !!! | TTTTTGTTGTTGTTTTGAAT+AGG | - | Chr4:87414878-87414897 | MsG0480023596.01.T01:CDS | 20.0% |
| ! | TAAGGGTAATATTGGAATTA+TGG | - | Chr4:87416355-87416374 | MsG0480023596.01.T01:intron | 25.0% |
| !! | AAATTTTTCTGAATCTGTGA+TGG | - | Chr4:87415444-87415463 | MsG0480023596.01.T01:CDS | 25.0% |
| !! | TTCTTCTTTTCTTCTTTCTT+CGG | + | Chr4:87414957-87414976 | None:intergenic | 25.0% |
| !! | TTTTCATCACTGAAAATTTG+AGG | + | Chr4:87416296-87416315 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCTCTTGTTCTGA+AGG | + | Chr4:87415344-87415363 | None:intergenic | 25.0% |
| AAATCTGACAAATTCCTGAA+AGG | + | Chr4:87415686-87415705 | None:intergenic | 30.0% | |
| AAGACTTTAAGCACAATTTC+TGG | + | Chr4:87415044-87415063 | None:intergenic | 30.0% | |
| AAGGTGAAAAAGATCAGAAA+GGG | - | Chr4:87416084-87416103 | MsG0480023596.01.T01:CDS | 30.0% | |
| AGAATCACTATCATAACCTT+AGG | + | Chr4:87415506-87415525 | None:intergenic | 30.0% | |
| GAATATGTTTACAAGAGAAC+TGG | - | Chr4:87415978-87415997 | MsG0480023596.01.T01:CDS | 30.0% | |
| GGTAATGATAAGGGTAATAT+TGG | - | Chr4:87416347-87416366 | MsG0480023596.01.T01:intron | 30.0% | |
| TACATGATAGAACAAGCATT+TGG | + | Chr4:87416320-87416339 | None:intergenic | 30.0% | |
| TGTTGTTAAAGGAGAAAAAG+CGG | - | Chr4:87415241-87415260 | MsG0480023596.01.T01:intron | 30.0% | |
| !! | TTGATGATGATAGAATGAGT+GGG | - | Chr4:87414539-87414558 | MsG0480023596.01.T01:three_prime_UTR | 30.0% |
| !!! | AGTTTTTTTCTCTTCGTCTT+TGG | + | Chr4:87416060-87416079 | None:intergenic | 30.0% |
| !!! | ATTACACTTTTTCTACTGCA+GGG | + | Chr4:87416465-87416484 | None:intergenic | 30.0% |
| !!! | TATTTTAATCCACCAAGGTA+TGG | - | Chr4:87416233-87416252 | MsG0480023596.01.T01:intron | 30.0% |
| !!! | TGTTTGTGATGGATTTTTCA+GGG | - | Chr4:87415180-87415199 | MsG0480023596.01.T01:intron | 30.0% |
| !!! | TTGTTTGTGATGGATTTTTC+AGG | - | Chr4:87415179-87415198 | MsG0480023596.01.T01:intron | 30.0% |
| !!! | TTTGGATGTTCTTTTTTCTC+TGG | + | Chr4:87416032-87416051 | None:intergenic | 30.0% |
| AAAGTCTTCATGCATTGTGA+AGG | - | Chr4:87415056-87415075 | MsG0480023596.01.T01:CDS | 35.0% | |
| AAGACACATGGAATAGAACA+TGG | + | Chr4:87414468-87414487 | None:intergenic | 35.0% | |
| ACTCTTTCAAGAACCTTCAA+TGG | + | Chr4:87415269-87415288 | None:intergenic | 35.0% | |
| AGACGAAGAGAAAAAAACTG+AGG | - | Chr4:87416061-87416080 | MsG0480023596.01.T01:CDS | 35.0% | |
| AGACGCATTGAGAAAATCAA+AGG | - | Chr4:87415569-87415588 | MsG0480023596.01.T01:intron | 35.0% | |
| AGTTTCAAGCTTAAGACACA+TGG | + | Chr4:87414480-87414499 | None:intergenic | 35.0% | |
| ATAGGAAGAAAAGAAACCAG+AGG | - | Chr4:87414896-87414915 | MsG0480023596.01.T01:CDS | 35.0% | |
| CATCACTGAAAATTTGAGGA+GGG | + | Chr4:87416292-87416311 | None:intergenic | 35.0% | |
| GAAGAGAAAAAAACTGAGGA+AGG | - | Chr4:87416065-87416084 | MsG0480023596.01.T01:CDS | 35.0% | |
| GAAGGTGAAAAAGATCAGAA+AGG | - | Chr4:87416083-87416102 | MsG0480023596.01.T01:CDS | 35.0% | |
| GACAGAAGAAGAGAAAAAAC+CGG | - | Chr4:87414995-87415014 | MsG0480023596.01.T01:CDS | 35.0% | |
| TCATCACTGAAAATTTGAGG+AGG | + | Chr4:87416293-87416312 | None:intergenic | 35.0% | |
| TGACAAATTCCTGAAAGGAT+GGG | + | Chr4:87415681-87415700 | None:intergenic | 35.0% | |
| TTATTATATGGTGCAGCCTA+AGG | - | Chr4:87415487-87415506 | MsG0480023596.01.T01:CDS | 35.0% | |
| ! | ACTTTAAGCACAATTTCTGG+CGG | + | Chr4:87415041-87415060 | None:intergenic | 35.0% |
| ! | TACTGATTGCAAATCTCACA+AGG | - | Chr4:87415217-87415236 | MsG0480023596.01.T01:intron | 35.0% |
| ! | TCTCACAAGGTTGTTGTTAA+AGG | - | Chr4:87415230-87415249 | MsG0480023596.01.T01:intron | 35.0% |
| ! | TTCTTTTCTTCTTTCTTCGG+TGG | + | Chr4:87414954-87414973 | None:intergenic | 35.0% |
| !! | GTTGATGATGATAGAATGAG+TGG | - | Chr4:87414538-87414557 | MsG0480023596.01.T01:three_prime_UTR | 35.0% |
| !! | TCTTCGTCTTTGGTTTCTTT+TGG | + | Chr4:87416050-87416069 | None:intergenic | 35.0% |
| !!! | GATTACACTTTTTCTACTGC+AGG | + | Chr4:87416466-87416485 | None:intergenic | 35.0% |
| !!! | GGTTTTTTCTCTTCTTCTGT+CGG | + | Chr4:87414996-87415015 | None:intergenic | 35.0% |
| !!! | GTTTGTGATGGATTTTTCAG+GGG | - | Chr4:87415181-87415200 | MsG0480023596.01.T01:intron | 35.0% |
| !!! | TTTTTCTCTTGTTCTGAAGG+TGG | + | Chr4:87415341-87415360 | None:intergenic | 35.0% |
| AAAAGGCAAAACTCTTCACC+TGG | + | Chr4:87415119-87415138 | None:intergenic | 40.0% | |
| AAAATTTGAGGAGGGTAAGC+TGG | + | Chr4:87416284-87416303 | None:intergenic | 40.0% | |
| AAAGTTCGTCGTTCACTCAA+AGG | - | Chr4:87415089-87415108 | MsG0480023596.01.T01:CDS | 40.0% | |
| AACTCACTAGTGACAGTGAA+AGG | - | Chr4:87415930-87415949 | MsG0480023596.01.T01:CDS | 40.0% | |
| ACTAGTGAGTTCTTCAGATC+CGG | + | Chr4:87415921-87415940 | None:intergenic | 40.0% | |
| AGAAAAAGCGGATCCATTGA+AGG | - | Chr4:87415253-87415272 | MsG0480023596.01.T01:intron | 40.0% | |
| AGAAGAAGAGAAAAAACCGG+AGG | - | Chr4:87414998-87415017 | MsG0480023596.01.T01:CDS | 40.0% | |
| AGGTTCTTGAAAGAGTTCAG+AGG | - | Chr4:87415273-87415292 | MsG0480023596.01.T01:intron | 40.0% | |
| AGTAGAGGAGAAAAAACCAG+AGG | - | Chr4:87414926-87414945 | MsG0480023596.01.T01:CDS | 40.0% | |
| AGTCAGTCACACTAAACCAA+TGG | - | Chr4:87414760-87414779 | MsG0480023596.01.T01:CDS | 40.0% | |
| CTATCATCATCAACATGACG+TGG | + | Chr4:87414532-87414551 | None:intergenic | 40.0% | |
| CTGACAAATTCCTGAAAGGA+TGG | + | Chr4:87415682-87415701 | None:intergenic | 40.0% | |
| GAAAAAACCGGAGGAATCTA+AGG | - | Chr4:87415007-87415026 | MsG0480023596.01.T01:CDS | 40.0% | |
| GAAAAAGATCAGAAAGGGAG+TGG | - | Chr4:87416089-87416108 | MsG0480023596.01.T01:CDS | 40.0% | |
| GAGAGAGAGATATAGAAGCT+AGG | + | Chr4:87414707-87414726 | None:intergenic | 40.0% | |
| GAGAGATATAGAAGCTAGGT+TGG | + | Chr4:87414703-87414722 | None:intergenic | 40.0% | |
| GGAAGAAAAGAAAGCTGAAG+AGG | - | Chr4:87415391-87415410 | MsG0480023596.01.T01:intron | 40.0% | |
| GTAACTTCCTTAGATTCCTC+CGG | + | Chr4:87415017-87415036 | None:intergenic | 40.0% | |
| GTCAGTCACACTAAACCAAT+GGG | - | Chr4:87414761-87414780 | MsG0480023596.01.T01:CDS | 40.0% | |
| TAAAACTCCGTACCATACCT+TGG | + | Chr4:87416248-87416267 | None:intergenic | 40.0% | |
| TAATCCACCAAGGTATGGTA+CGG | - | Chr4:87416238-87416257 | MsG0480023596.01.T01:intron | 40.0% | |
| ! | ACTGCAGGGAAAAGTACATA+GGG | + | Chr4:87416451-87416470 | None:intergenic | 40.0% |
| ! | ATGAGTGGGTTCAAATCAGA+TGG | - | Chr4:87414553-87414572 | MsG0480023596.01.T01:three_prime_UTR | 40.0% |
| ! | TACTGCAGGGAAAAGTACAT+AGG | + | Chr4:87416452-87416471 | None:intergenic | 40.0% |
| ! | TCAGCTTTCTTTTCTTCCTG+TGG | + | Chr4:87415389-87415408 | None:intergenic | 40.0% |
| ! | TTCTTTTCTTCCTGTGGCTT+AGG | + | Chr4:87415383-87415402 | None:intergenic | 40.0% |
| ! | TTTTTCTCTTCTTCTGTCGG+TGG | + | Chr4:87414993-87415012 | None:intergenic | 40.0% |
| !! | ACGGAGTTTTATGCATATCC+TGG | - | Chr4:87416257-87416276 | MsG0480023596.01.T01:intron | 40.0% |
| !! | CTTGTTCTGAAGGTGGTTTA+GGG | + | Chr4:87415334-87415353 | None:intergenic | 40.0% |
| !! | TCTTGTTCTGAAGGTGGTTT+AGG | + | Chr4:87415335-87415354 | None:intergenic | 40.0% |
| ACCAGAGGAAACGAAAGTAG+AGG | - | Chr4:87414911-87414930 | MsG0480023596.01.T01:CDS | 45.0% | |
| ACTAAACCAATGGGAGAGGT+TGG | - | Chr4:87414770-87414789 | MsG0480023596.01.T01:CDS | 45.0% | |
| AGGAGTTGTATCAGCTGAAC+CGG | - | Chr4:87415899-87415918 | MsG0480023596.01.T01:CDS | 45.0% | |
| AGGTGGTGCAGAAGAAGTTA+AGG | - | Chr4:87416184-87416203 | MsG0480023596.01.T01:intron | 45.0% | |
| ATGACGTGGCAAACTTTGAG+AGG | + | Chr4:87414518-87414537 | None:intergenic | 45.0% | |
| GAAAGAGAAACCTAAGCCAC+AGG | - | Chr4:87415370-87415389 | MsG0480023596.01.T01:intron | 45.0% | |
| GATGGAAAACCAAGTGGTGA+TGG | - | Chr4:87416158-87416177 | MsG0480023596.01.T01:intron | 45.0% | |
| TCACACTAAACCAATGGGAG+AGG | - | Chr4:87414766-87414785 | MsG0480023596.01.T01:CDS | 45.0% | |
| TCCTCTACTTTCGTTTCCTC+TGG | + | Chr4:87414915-87414934 | None:intergenic | 45.0% | |
| TCTGAAGGTGGTTTAGGGAT+CGG | + | Chr4:87415329-87415348 | None:intergenic | 45.0% | |
| TGCAGAAGAAGTTAAGGTGG+TGG | - | Chr4:87416190-87416209 | MsG0480023596.01.T01:intron | 45.0% | |
| TGGTGCAGAAGAAGTTAAGG+TGG | - | Chr4:87416187-87416206 | MsG0480023596.01.T01:intron | 45.0% | |
| TTCTCATGTCCCATCCTTTC+AGG | - | Chr4:87415669-87415688 | MsG0480023596.01.T01:CDS | 45.0% | |
| ! | AGTGTGACTGACTGACTCAA+AGG | + | Chr4:87414753-87414772 | None:intergenic | 45.0% |
| ! | CGTTCACTCAAAGGTTTTCC+AGG | - | Chr4:87415098-87415117 | MsG0480023596.01.T01:intron | 45.0% |
| !! | TAGAAGCTAGGTTGGTTCTG+CGG | + | Chr4:87414695-87414714 | None:intergenic | 45.0% |
| !!! | AGTTAAAATATTTTATAATA+AGG | + | Chr4:87415792-87415811 | None:intergenic | 5.0% |
| !!! | ATCATTTTTATTTTATTATA+TGG | - | Chr4:87415475-87415494 | MsG0480023596.01.T01:CDS | 5.0% |
| AACTCCGTACCATACCTTGG+TGG | + | Chr4:87416245-87416264 | None:intergenic | 50.0% | |
| AAGTGGTCCTGCAAGTGCAA+AGG | - | Chr4:87415827-87415846 | MsG0480023596.01.T01:intron | 50.0% | |
| ACATAGGGCACATCTTACCC+AGG | + | Chr4:87416436-87416455 | None:intergenic | 50.0% | |
| AGAGAACCAACCTCTCCCAT+TGG | + | Chr4:87414779-87414798 | None:intergenic | 50.0% | |
| AGTGGTCCTGCAAGTGCAAA+GGG | - | Chr4:87415828-87415847 | MsG0480023596.01.T01:intron | 50.0% | |
| CTGGGTGAAAGCCATATCCT+GGG | - | Chr4:87416416-87416435 | MsG0480023596.01.T01:intron | 50.0% | |
| GAGGGAGATGGAAAACCAAG+TGG | - | Chr4:87416152-87416171 | MsG0480023596.01.T01:intron | 50.0% | |
| GATCAGAAAGGGAGTGGTGA+AGG | - | Chr4:87416095-87416114 | MsG0480023596.01.T01:intron | 50.0% | |
| GGCACATCTTACCCAGGATA+TGG | + | Chr4:87416430-87416449 | None:intergenic | 50.0% | |
| TCTGGGTGAAAGCCATATCC+TGG | - | Chr4:87416415-87416434 | MsG0480023596.01.T01:intron | 50.0% | |
| TCTTTCTTCGGTGGTTCCTC+TGG | + | Chr4:87414945-87414964 | None:intergenic | 50.0% | |
| ! | ACTTTGAGAGGCACGTGCAA+TGG | + | Chr4:87414506-87414525 | None:intergenic | 50.0% |
| !! | AAACCAAGTGGTGATGGAGG+AGG | - | Chr4:87416164-87416183 | MsG0480023596.01.T01:intron | 50.0% |
| !! | GGAAAACCAAGTGGTGATGG+AGG | - | Chr4:87416161-87416180 | MsG0480023596.01.T01:intron | 50.0% |
| GAAAGGGAGTGGTGAAGGAG+AGG | - | Chr4:87416100-87416119 | MsG0480023596.01.T01:intron | 55.0% | |
| GTCACACCCTTTGCACTTGC+AGG | + | Chr4:87415837-87415856 | None:intergenic | 55.0% | |
| ! | TTGAGAGGCACGTGCAATGG+AGG | + | Chr4:87414503-87414522 | None:intergenic | 55.0% |
| CCACCTCCTCCATCACCACT+TGG | + | Chr4:87416170-87416189 | None:intergenic | 60.0% | |
| TGAGGAGGGTAAGCTGGACC+AGG | + | Chr4:87416278-87416297 | None:intergenic | 60.0% | |
| !! | CCAAGTGGTGATGGAGGAGG+TGG | - | Chr4:87416167-87416186 | MsG0480023596.01.T01:intron | 60.0% |
| AGCTGCAGCTGCAGCTGCAG+AGG | - | Chr4:87416133-87416152 | MsG0480023596.01.T01:intron | 65.0% | |
| GCTGCAGCTGCAGAGGGAGA+TGG | - | Chr4:87416140-87416159 | MsG0480023596.01.T01:intron | 65.0% | |
| GCTGCAGCTGCAGCTGCAGA+GGG | - | Chr4:87416134-87416153 | MsG0480023596.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 87414423 | 87416589 | 87414423 | ID=MsG0480023596.01;Name=MsG0480023596.01 |
| Chr4 | mRNA | 87414423 | 87416589 | 87414423 | ID=MsG0480023596.01.T01;Parent=MsG0480023596.01;Name=MsG0480023596.01.T01;_AED=0.21;_eAED=0.21;_QI=0|0.75|0.8|0.8|0.75|0.8|5|249|325 |
| Chr4 | exon | 87414423 | 87415111 | 87414423 | ID=MsG0480023596.01.T01:exon:6168;Parent=MsG0480023596.01.T01 |
| Chr4 | exon | 87415422 | 87415509 | 87415422 | ID=MsG0480023596.01.T01:exon:6167;Parent=MsG0480023596.01.T01 |
| Chr4 | exon | 87415600 | 87415811 | 87415600 | ID=MsG0480023596.01.T01:exon:6166;Parent=MsG0480023596.01.T01 |
| Chr4 | exon | 87415893 | 87416112 | 87415893 | ID=MsG0480023596.01.T01:exon:6165;Parent=MsG0480023596.01.T01 |
| Chr4 | exon | 87416572 | 87416589 | 87416572 | ID=MsG0480023596.01.T01:exon:6164;Parent=MsG0480023596.01.T01 |
| Chr4 | CDS | 87416572 | 87416589 | 87416572 | ID=MsG0480023596.01.T01:cds;Parent=MsG0480023596.01.T01 |
| Chr4 | CDS | 87415893 | 87416112 | 87415893 | ID=MsG0480023596.01.T01:cds;Parent=MsG0480023596.01.T01 |
| Chr4 | CDS | 87415600 | 87415811 | 87415600 | ID=MsG0480023596.01.T01:cds;Parent=MsG0480023596.01.T01 |
| Chr4 | CDS | 87415422 | 87415509 | 87415422 | ID=MsG0480023596.01.T01:cds;Parent=MsG0480023596.01.T01 |
| Chr4 | CDS | 87414672 | 87415111 | 87414672 | ID=MsG0480023596.01.T01:cds;Parent=MsG0480023596.01.T01 |
| Chr4 | three_prime_UTR | 87414423 | 87414671 | 87414423 | ID=MsG0480023596.01.T01:three_prime_utr;Parent=MsG0480023596.01.T01 |
| Gene Sequence |
| Protein sequence |
