Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026606.01.T01 | KAF3596785.1 | 62.951 | 305 | 56 | 5 | 1 | 272 | 11 | 291 | 1.12E-118 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026606.01.T01 | Q8LJW3 | 54.11 | 292 | 92 | 5 | 23 | 272 | 117 | 408 | 5.22E-88 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026606.01.T01 | A0A6A3AZC9 | 59.538 | 346 | 66 | 6 | 1 | 272 | 9 | 354 | 1.95e-121 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048800.01 | MsG0580026606.01 | -0.801906 | 7.217024e-49 | 3.487736e-46 |
| MsG0080049076.01 | MsG0580026606.01 | -0.813047 | 3.118818e-51 | 2.015137e-48 |
| MsG0180000401.01 | MsG0580026606.01 | 0.804304 | 2.303243e-49 | 1.183476e-46 |
| MsG0180002276.01 | MsG0580026606.01 | 0.804179 | 2.445351e-49 | 1.252465e-46 |
| MsG0180006226.01 | MsG0580026606.01 | -0.817337 | 3.474523e-52 | 2.523343e-49 |
| MsG0280006425.01 | MsG0580026606.01 | 0.843288 | 1.536565e-58 | 2.392906e-55 |
| MsG0280006436.01 | MsG0580026606.01 | 0.807096 | 5.971134e-50 | 3.296324e-47 |
| MsG0280010868.01 | MsG0580026606.01 | 0.855945 | 4.488062e-62 | 1.053854e-58 |
| MsG0380013940.01 | MsG0580026606.01 | -0.804670 | 1.931981e-49 | 1.002126e-46 |
| MsG0380013945.01 | MsG0580026606.01 | -0.805570 | 1.252397e-49 | 6.648221e-47 |
| MsG0380013953.01 | MsG0580026606.01 | -0.840041 | 1.103708e-57 | 1.553188e-54 |
| MsG0380013957.01 | MsG0580026606.01 | -0.818195 | 2.225315e-52 | 1.654560e-49 |
| MsG0380013967.01 | MsG0580026606.01 | -0.816655 | 4.945588e-52 | 3.525249e-49 |
| MsG0380013977.01 | MsG0580026606.01 | -0.807050 | 6.108106e-50 | 3.367913e-47 |
| MsG0380014006.01 | MsG0580026606.01 | -0.840948 | 6.391625e-58 | 9.249480e-55 |
| MsG0380014032.01 | MsG0580026606.01 | -0.806740 | 7.102578e-50 | 3.885073e-47 |
| MsG0380014161.01 | MsG0580026606.01 | 0.820876 | 5.439347e-53 | 4.356817e-50 |
| MsG0380014754.01 | MsG0580026606.01 | 0.806831 | 6.796022e-50 | 3.726065e-47 |
| MsG0480019277.01 | MsG0580026606.01 | 0.825249 | 5.195662e-54 | 4.710393e-51 |
| MsG0480020371.01 | MsG0580026606.01 | 0.807308 | 5.385482e-50 | 2.989615e-47 |
| MsG0480021958.01 | MsG0580026606.01 | 0.851285 | 9.805467e-61 | 1.974949e-57 |
| MsG0480022480.01 | MsG0580026606.01 | 0.816258 | 6.067818e-52 | 4.278603e-49 |
| MsG0480022974.01 | MsG0580026606.01 | 0.826985 | 2.008779e-54 | 1.913796e-51 |
| MsG0480023450.01 | MsG0580026606.01 | 0.830752 | 2.460057e-55 | 2.615914e-52 |
| MsG0480023536.01 | MsG0580026606.01 | 0.810709 | 1.007433e-50 | 6.116932e-48 |
| MsG0480023674.01 | MsG0580026606.01 | -0.803428 | 3.503092e-49 | 1.759913e-46 |
| MsG0580024478.01 | MsG0580026606.01 | 0.814877 | 1.231357e-51 | 8.360406e-49 |
| MsG0580024563.01 | MsG0580026606.01 | 0.814044 | 1.882722e-51 | 1.249857e-48 |
| MsG0380015389.01 | MsG0580026606.01 | 0.800478 | 1.414633e-48 | 6.593367e-46 |
| MsG0380015924.01 | MsG0580026606.01 | 0.807016 | 6.209386e-50 | 3.420803e-47 |
| MsG0380016018.01 | MsG0580026606.01 | 0.802494 | 5.461728e-49 | 2.679199e-46 |
| MsG0380017881.01 | MsG0580026606.01 | 0.812831 | 3.478417e-51 | 2.234430e-48 |
| MsG0580026606.01 | MsG0580028307.01 | 0.856491 | 3.103530e-62 | 7.421707e-59 |
| MsG0580026606.01 | MsG0580029767.01 | 0.812694 | 3.727647e-51 | 2.386142e-48 |
| MsG0580026606.01 | MsG0580029798.01 | 0.806417 | 8.309811e-50 | 4.507829e-47 |
| MsG0580026606.01 | MsG0780038945.01 | 0.837206 | 5.958294e-57 | 7.684290e-54 |
| MsG0580026606.01 | MsG0780039450.01 | 0.803322 | 3.684414e-49 | 1.845931e-46 |
| MsG0580026606.01 | MsG0780040144.01 | 0.805610 | 1.228303e-49 | 6.527139e-47 |
| MsG0580026606.01 | MsG0780041705.01 | 0.856935 | 2.297882e-62 | 5.575233e-59 |
| MsG0580026606.01 | MsG0880041860.01 | 0.815257 | 1.013964e-51 | 6.955946e-49 |
| MsG0580026606.01 | MsG0880047120.01 | 0.812493 | 4.123641e-51 | 2.625766e-48 |
| MsG0280007089.01 | MsG0580026606.01 | 0.805671 | 1.192877e-49 | 6.348930e-47 |
| MsG0280008280.01 | MsG0580026606.01 | 0.802397 | 5.719672e-49 | 2.798992e-46 |
| MsG0280010391.01 | MsG0580026606.01 | 0.800211 | 1.603146e-48 | 7.421694e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026606.01.T01 | MTR_5g047260 | 66.431 | 283 | 57 | 4 | 28 | 272 | 132 | 414 | 1.54e-116 | 342 |
| MsG0580026606.01.T01 | MTR_5g047260 | 65.839 | 161 | 42 | 4 | 1 | 161 | 17 | 164 | 1.06e-58 | 193 |
| MsG0580026606.01.T01 | MTR_7g022470 | 45.361 | 291 | 118 | 4 | 23 | 272 | 121 | 411 | 2.93e-71 | 226 |
| MsG0580026606.01.T01 | MTR_7g022470 | 63.542 | 96 | 35 | 0 | 1 | 96 | 10 | 105 | 4.80e-36 | 134 |
| MsG0580026606.01.T01 | MTR_7g028050 | 43.729 | 295 | 118 | 6 | 23 | 272 | 9 | 300 | 7.21e-68 | 214 |
| MsG0580026606.01.T01 | MTR_7g028050 | 43.729 | 295 | 118 | 6 | 23 | 272 | 112 | 403 | 2.35e-66 | 213 |
| MsG0580026606.01.T01 | MTR_7g028050 | 70.968 | 93 | 27 | 0 | 1 | 93 | 1 | 93 | 1.21e-41 | 148 |
| MsG0580026606.01.T01 | MTR_5g047260 | 52.174 | 230 | 71 | 5 | 28 | 219 | 132 | 360 | 1.05e-61 | 199 |
| MsG0580026606.01.T01 | MTR_5g047260 | 94.898 | 98 | 5 | 0 | 1 | 98 | 17 | 114 | 1.66e-59 | 193 |
| MsG0580026606.01.T01 | MTR_5g011580 | 42.160 | 287 | 129 | 6 | 23 | 272 | 109 | 395 | 1.44e-60 | 198 |
| MsG0580026606.01.T01 | MTR_5g011580 | 59.574 | 94 | 38 | 0 | 3 | 96 | 8 | 101 | 3.78e-31 | 120 |
| MsG0580026606.01.T01 | MTR_5g047260 | 94.898 | 98 | 5 | 0 | 1 | 98 | 17 | 114 | 7.60e-60 | 192 |
| MsG0580026606.01.T01 | MTR_5g047260 | 52.601 | 173 | 51 | 4 | 28 | 169 | 132 | 304 | 1.64e-44 | 153 |
| MsG0580026606.01.T01 | MTR_4g101950 | 40.351 | 285 | 127 | 6 | 28 | 272 | 114 | 395 | 4.15e-56 | 186 |
| MsG0580026606.01.T01 | MTR_4g101950 | 67.778 | 90 | 29 | 0 | 3 | 92 | 8 | 97 | 6.27e-36 | 133 |
| MsG0580026606.01.T01 | MTR_3g088885 | 40.702 | 285 | 126 | 5 | 29 | 270 | 130 | 414 | 9.25e-55 | 183 |
| MsG0580026606.01.T01 | MTR_3g088885 | 61.165 | 103 | 40 | 0 | 1 | 103 | 9 | 111 | 1.44e-36 | 135 |
| MsG0580026606.01.T01 | MTR_1g029520 | 49.495 | 198 | 68 | 3 | 105 | 270 | 451 | 648 | 1.93e-51 | 179 |
| MsG0580026606.01.T01 | MTR_1g029520 | 65.432 | 81 | 28 | 0 | 17 | 97 | 254 | 334 | 5.59e-28 | 113 |
| MsG0580026606.01.T01 | MTR_5g015170 | 32.770 | 296 | 149 | 8 | 24 | 269 | 133 | 428 | 2.23e-40 | 146 |
| MsG0580026606.01.T01 | MTR_5g015170 | 43.827 | 162 | 85 | 2 | 1 | 159 | 9 | 167 | 2.09e-32 | 124 |
| MsG0580026606.01.T01 | MTR_4g097380 | 32.226 | 301 | 151 | 8 | 22 | 270 | 143 | 442 | 2.13e-35 | 132 |
| MsG0580026606.01.T01 | MTR_4g097380 | 51.786 | 112 | 54 | 0 | 1 | 112 | 28 | 139 | 1.32e-31 | 122 |
| MsG0580026606.01.T01 | MTR_1g012740 | 35.165 | 91 | 58 | 1 | 141 | 230 | 54 | 144 | 2.45e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026606.01.T01 | AT1G69040 | 54.110 | 292 | 92 | 5 | 23 | 272 | 117 | 408 | 5.32e-89 | 271 |
| MsG0580026606.01.T01 | AT1G69040 | 80.198 | 101 | 20 | 0 | 1 | 101 | 7 | 107 | 1.13e-49 | 170 |
| MsG0580026606.01.T01 | AT1G69040 | 54.110 | 292 | 92 | 5 | 23 | 272 | 121 | 412 | 7.08e-89 | 271 |
| MsG0580026606.01.T01 | AT1G69040 | 80.198 | 101 | 20 | 0 | 1 | 101 | 11 | 111 | 1.25e-49 | 170 |
| MsG0580026606.01.T01 | AT2G03730 | 51.466 | 307 | 96 | 7 | 16 | 272 | 117 | 420 | 1.92e-82 | 255 |
| MsG0580026606.01.T01 | AT2G03730 | 54.321 | 162 | 62 | 3 | 1 | 161 | 11 | 161 | 4.34e-45 | 158 |
| MsG0580026606.01.T01 | AT2G03730 | 51.466 | 307 | 96 | 7 | 16 | 272 | 117 | 420 | 1.92e-82 | 255 |
| MsG0580026606.01.T01 | AT2G03730 | 54.321 | 162 | 62 | 3 | 1 | 161 | 11 | 161 | 4.34e-45 | 158 |
| MsG0580026606.01.T01 | AT3G01990 | 44.898 | 294 | 120 | 6 | 12 | 266 | 103 | 393 | 7.88e-68 | 217 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 3 | 94 | 8.66e-43 | 151 |
| MsG0580026606.01.T01 | AT3G01990 | 44.898 | 294 | 120 | 6 | 12 | 266 | 103 | 393 | 7.88e-68 | 217 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 3 | 94 | 8.66e-43 | 151 |
| MsG0580026606.01.T01 | AT3G01990 | 45.205 | 292 | 118 | 6 | 14 | 266 | 119 | 407 | 8.09e-68 | 217 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 17 | 108 | 7.26e-43 | 152 |
| MsG0580026606.01.T01 | AT3G01990 | 45.205 | 292 | 118 | 6 | 14 | 266 | 119 | 407 | 9.33e-68 | 217 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 17 | 108 | 8.46e-43 | 152 |
| MsG0580026606.01.T01 | AT3G01990 | 45.205 | 292 | 118 | 6 | 14 | 266 | 119 | 407 | 9.33e-68 | 217 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 17 | 108 | 8.46e-43 | 152 |
| MsG0580026606.01.T01 | AT3G01990 | 45.205 | 292 | 118 | 6 | 14 | 266 | 105 | 393 | 9.73e-68 | 216 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 3 | 94 | 7.99e-43 | 151 |
| MsG0580026606.01.T01 | AT1G76990 | 41.404 | 285 | 125 | 5 | 28 | 270 | 129 | 413 | 1.79e-59 | 196 |
| MsG0580026606.01.T01 | AT1G76990 | 67.010 | 97 | 32 | 0 | 1 | 97 | 9 | 105 | 4.57e-37 | 136 |
| MsG0580026606.01.T01 | AT1G76990 | 41.404 | 285 | 125 | 5 | 28 | 270 | 129 | 413 | 1.79e-59 | 196 |
| MsG0580026606.01.T01 | AT1G76990 | 67.010 | 97 | 32 | 0 | 1 | 97 | 9 | 105 | 4.57e-37 | 136 |
| MsG0580026606.01.T01 | AT1G76990 | 41.404 | 285 | 125 | 5 | 28 | 270 | 129 | 413 | 1.79e-59 | 196 |
| MsG0580026606.01.T01 | AT1G76990 | 67.010 | 97 | 32 | 0 | 1 | 97 | 9 | 105 | 4.57e-37 | 136 |
| MsG0580026606.01.T01 | AT1G76990 | 41.404 | 285 | 125 | 5 | 28 | 270 | 129 | 413 | 1.79e-59 | 196 |
| MsG0580026606.01.T01 | AT1G76990 | 67.010 | 97 | 32 | 0 | 1 | 97 | 9 | 105 | 4.57e-37 | 136 |
| MsG0580026606.01.T01 | AT1G76990 | 41.404 | 285 | 125 | 5 | 28 | 270 | 129 | 413 | 1.79e-59 | 196 |
| MsG0580026606.01.T01 | AT1G76990 | 67.010 | 97 | 32 | 0 | 1 | 97 | 9 | 105 | 4.57e-37 | 136 |
| MsG0580026606.01.T01 | AT1G12420 | 40.206 | 291 | 121 | 6 | 28 | 272 | 42 | 325 | 7.57e-54 | 179 |
| MsG0580026606.01.T01 | AT1G12420 | 40.206 | 291 | 121 | 6 | 28 | 272 | 114 | 397 | 5.67e-53 | 178 |
| MsG0580026606.01.T01 | AT1G12420 | 66.667 | 90 | 30 | 0 | 3 | 92 | 8 | 97 | 3.90e-33 | 125 |
| MsG0580026606.01.T01 | AT4G22780 | 39.209 | 278 | 128 | 8 | 28 | 266 | 114 | 389 | 4.36e-50 | 171 |
| MsG0580026606.01.T01 | AT4G22780 | 64.444 | 90 | 32 | 0 | 3 | 92 | 8 | 97 | 2.29e-31 | 121 |
| MsG0580026606.01.T01 | AT4G22780 | 39.209 | 278 | 128 | 8 | 28 | 266 | 114 | 389 | 4.36e-50 | 171 |
| MsG0580026606.01.T01 | AT4G22780 | 64.444 | 90 | 32 | 0 | 3 | 92 | 8 | 97 | 2.29e-31 | 121 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 17 | 108 | 8.50e-44 | 151 |
| MsG0580026606.01.T01 | AT3G01990 | 38.298 | 188 | 81 | 5 | 14 | 169 | 119 | 303 | 1.35e-25 | 103 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 3 | 94 | 9.37e-44 | 150 |
| MsG0580026606.01.T01 | AT3G01990 | 38.298 | 188 | 81 | 5 | 14 | 169 | 105 | 289 | 1.56e-25 | 103 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 17 | 108 | 1.28e-43 | 151 |
| MsG0580026606.01.T01 | AT3G01990 | 38.865 | 229 | 98 | 6 | 14 | 203 | 119 | 344 | 3.86e-36 | 132 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 3 | 94 | 1.33e-43 | 151 |
| MsG0580026606.01.T01 | AT3G01990 | 38.865 | 229 | 98 | 6 | 14 | 203 | 105 | 330 | 4.35e-36 | 131 |
| MsG0580026606.01.T01 | AT3G01990 | 76.087 | 92 | 22 | 0 | 2 | 93 | 17 | 108 | 1.36e-43 | 151 |
| MsG0580026606.01.T01 | AT3G01990 | 39.732 | 224 | 93 | 6 | 14 | 198 | 119 | 339 | 5.22e-36 | 131 |
| MsG0580026606.01.T01 | AT5G25320 | 31.310 | 313 | 147 | 5 | 28 | 272 | 96 | 408 | 9.94e-42 | 149 |
| MsG0580026606.01.T01 | AT5G25320 | 41.045 | 134 | 69 | 2 | 30 | 160 | 1 | 127 | 9.74e-25 | 102 |
| MsG0580026606.01.T01 | AT5G25320 | 31.310 | 313 | 147 | 5 | 28 | 272 | 135 | 447 | 2.24e-41 | 149 |
| MsG0580026606.01.T01 | AT5G25320 | 41.212 | 165 | 85 | 4 | 1 | 160 | 9 | 166 | 7.43e-31 | 120 |
| MsG0580026606.01.T01 | AT5G65890 | 30.990 | 313 | 161 | 6 | 13 | 270 | 4 | 316 | 1.50e-40 | 144 |
| MsG0580026606.01.T01 | AT5G65890 | 30.990 | 313 | 161 | 6 | 13 | 270 | 66 | 378 | 5.74e-40 | 144 |
| MsG0580026606.01.T01 | AT5G65890 | 63.265 | 49 | 18 | 0 | 44 | 92 | 1 | 49 | 4.39e-14 | 72.0 |
| MsG0580026606.01.T01 | AT5G65890 | 30.990 | 313 | 161 | 6 | 13 | 270 | 66 | 378 | 5.74e-40 | 144 |
| MsG0580026606.01.T01 | AT5G65890 | 63.265 | 49 | 18 | 0 | 44 | 92 | 1 | 49 | 4.39e-14 | 72.0 |
| MsG0580026606.01.T01 | AT5G65890 | 30.990 | 313 | 161 | 6 | 13 | 270 | 118 | 430 | 1.63e-39 | 143 |
| MsG0580026606.01.T01 | AT5G65890 | 59.783 | 92 | 37 | 0 | 1 | 92 | 10 | 101 | 2.36e-31 | 121 |
| MsG0580026606.01.T01 | AT5G65890 | 30.990 | 313 | 161 | 6 | 13 | 270 | 118 | 430 | 1.63e-39 | 143 |
| MsG0580026606.01.T01 | AT5G65890 | 59.783 | 92 | 37 | 0 | 1 | 92 | 10 | 101 | 2.36e-31 | 121 |
| MsG0580026606.01.T01 | AT5G25320 | 41.212 | 165 | 85 | 4 | 1 | 160 | 9 | 166 | 2.14e-31 | 120 |
| MsG0580026606.01.T01 | AT5G25320 | 25.105 | 239 | 111 | 5 | 28 | 198 | 135 | 373 | 3.62e-14 | 72.0 |
Find 75 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGTGTGACTTTAGTTTA+AGG | 0.147126 | 5:-40438965 | MsG0580026606.01.T01:three_prime_UTR |
| CTCAAAATGCCACTGTTATA+AGG | 0.177173 | 5:-40441322 | MsG0580026606.01.T01:CDS |
| GGTAACAGATGAAGTCATTT+TGG | 0.193644 | 5:-40440929 | MsG0580026606.01.T01:CDS |
| CCCATTATAGTTCTTGATTA+AGG | 0.196626 | 5:+40442276 | None:intergenic |
| TTCTACGTTCGCGGAGCTTC+TGG | 0.228860 | 5:-40439229 | MsG0580026606.01.T01:CDS |
| CTGTTACCTTGTTTCCATCT+TGG | 0.252705 | 5:+40440944 | None:intergenic |
| TCCTTAATCAAGAACTATAA+TGG | 0.259593 | 5:-40442277 | MsG0580026606.01.T01:five_prime_UTR |
| TTCAGGGTTGTAATTGATAA+TGG | 0.278263 | 5:-40441350 | MsG0580026606.01.T01:intron |
| TCTCAGAAGCTTGACCCTTT+AGG | 0.298683 | 5:-40438918 | MsG0580026606.01.T01:three_prime_UTR |
| TTCTGATGGTGGATGGTTCA+TGG | 0.305458 | 5:-40441088 | MsG0580026606.01.T01:CDS |
| TATTGTACAGTTGAAAGATT+TGG | 0.322364 | 5:-40439010 | MsG0580026606.01.T01:three_prime_UTR |
| GAATCTTGAGGTACAGATTC+AGG | 0.344720 | 5:+40439132 | None:intergenic |
| GATCTTTGTTAACTTTGGTT+TGG | 0.353496 | 5:-40439068 | MsG0580026606.01.T01:three_prime_UTR |
| ATCAGATGATGTTTGATGAT+AGG | 0.358215 | 5:-40440444 | MsG0580026606.01.T01:CDS |
| GAAGTGTGACTTTAGTTTAA+GGG | 0.365851 | 5:-40438964 | MsG0580026606.01.T01:three_prime_UTR |
| ATTGTCTTGAAGCTCGCTAT+TGG | 0.371697 | 5:-40440004 | MsG0580026606.01.T01:CDS |
| TCATTTGTATATAACTCATT+TGG | 0.371777 | 5:-40438746 | MsG0580026606.01.T01:three_prime_UTR |
| CTAAAGATTGATGATCTTGT+AGG | 0.380245 | 5:+40439108 | None:intergenic |
| TTGATTAAGGATTGATGAAA+TGG | 0.382296 | 5:+40442289 | None:intergenic |
| GTCTAGATCTTTGTTAACTT+TGG | 0.382450 | 5:-40439073 | MsG0580026606.01.T01:three_prime_UTR |
| GTAGGGTAAAATTTCAAGAT+TGG | 0.387003 | 5:+40442311 | None:intergenic |
| TCAAAATGCCACTGTTATAA+GGG | 0.390728 | 5:-40441321 | MsG0580026606.01.T01:intron |
| GAGGGGCCACAAGCATATTC+AGG | 0.397568 | 5:-40440233 | MsG0580026606.01.T01:intron |
| ACAACCAAACACTTCCTAAA+GGG | 0.402715 | 5:+40438904 | None:intergenic |
| TACGTGTTACGTTCGATAAT+AGG | 0.407166 | 5:+40439323 | None:intergenic |
| TTGACCCTTTAGGAAGTGTT+TGG | 0.410378 | 5:-40438908 | MsG0580026606.01.T01:three_prime_UTR |
| TCAGATGATGTTTGATGATA+GGG | 0.410378 | 5:-40440443 | MsG0580026606.01.T01:CDS |
| CCTTAATCAAGAACTATAAT+GGG | 0.419800 | 5:-40442276 | MsG0580026606.01.T01:intron |
| ACAAGATCATCAATCTTTAG+TGG | 0.431730 | 5:-40439105 | MsG0580026606.01.T01:three_prime_UTR |
| CTAAGACGATTGAATCGATT+AGG | 0.434007 | 5:-40439192 | MsG0580026606.01.T01:CDS |
| GTAAAATTTCAAGATTGGTT+CGG | 0.437095 | 5:+40442316 | None:intergenic |
| TTTCAAAGTTTACACAATCA+AGG | 0.438775 | 5:+40438782 | None:intergenic |
| GAATCGATTAGGCAAACAAT+TGG | 0.439461 | 5:-40439181 | MsG0580026606.01.T01:CDS |
| AAGGCTTATATTTCTTCTGA+TGG | 0.455420 | 5:-40441102 | MsG0580026606.01.T01:CDS |
| ATATTTCTTCTGATGGTGGA+TGG | 0.466352 | 5:-40441095 | MsG0580026606.01.T01:CDS |
| TTCTTTCTCCAACTAACGAT+TGG | 0.471376 | 5:+40438818 | None:intergenic |
| GGTAACACAATACTCAAAGT+AGG | 0.477634 | 5:-40439160 | MsG0580026606.01.T01:CDS |
| TACAACCAAACACTTCCTAA+AGG | 0.481143 | 5:+40438903 | None:intergenic |
| GTTATTTCAGTCTCATTACA+TGG | 0.487050 | 5:-40441503 | MsG0580026606.01.T01:exon |
| ATTCGACGCATACTGATAGA+AGG | 0.487974 | 5:-40440471 | MsG0580026606.01.T01:CDS |
| TCTAAATCTCATCATAACTA+AGG | 0.492141 | 5:-40441121 | MsG0580026606.01.T01:CDS |
| TTTGACAGATATGCAATATG+TGG | 0.492908 | 5:-40440279 | MsG0580026606.01.T01:CDS |
| CCAACTAACGATTGGATCCA+TGG | 0.493047 | 5:+40438826 | None:intergenic |
| ACAGTGTCGAAAACAAGCTT+TGG | 0.494289 | 5:+40440308 | None:intergenic |
| CCATGGATCCAATCGTTAGT+TGG | 0.496801 | 5:-40438826 | MsG0580026606.01.T01:three_prime_UTR |
| AGAATAGCCTCACAGTTACA+AGG | 0.500098 | 5:-40439291 | MsG0580026606.01.T01:CDS |
| CGATAATAGGCCGACTCTGT+CGG | 0.506054 | 5:+40439336 | None:intergenic |
| TTAAGGATTGATGAAATGGT+AGG | 0.510582 | 5:+40442293 | None:intergenic |
| GCTTATATTTCTTCTGATGG+TGG | 0.518224 | 5:-40441099 | MsG0580026606.01.T01:CDS |
| GTTAACACTTTCTACGTTCG+CGG | 0.519807 | 5:-40439238 | MsG0580026606.01.T01:CDS |
| TTTAATGTAACTGACCAAGA+TGG | 0.522792 | 5:-40440958 | MsG0580026606.01.T01:CDS |
| CATGCTAATATTGATGCTGA+GGG | 0.531891 | 5:-40440251 | MsG0580026606.01.T01:CDS |
| TGACTTTAGTTTAAGGGAGT+AGG | 0.541199 | 5:-40438958 | MsG0580026606.01.T01:three_prime_UTR |
| TCATGCTAATATTGATGCTG+AGG | 0.542296 | 5:-40440252 | MsG0580026606.01.T01:CDS |
| AATCGTTAGTTGGAGAAAGA+AGG | 0.563030 | 5:-40438816 | MsG0580026606.01.T01:three_prime_UTR |
| GTAACACAATACTCAAAGTA+GGG | 0.574463 | 5:-40439159 | MsG0580026606.01.T01:CDS |
| GGTGGTGGAAACAGGAAAAG+AGG | 0.576386 | 5:-40440517 | MsG0580026606.01.T01:intron |
| TAAGGATTGATGAAATGGTA+GGG | 0.576796 | 5:+40442294 | None:intergenic |
| TTAGAAGAATGAACCCTCCA+AGG | 0.580242 | 5:-40441459 | MsG0580026606.01.T01:intron |
| AAAGTTAAAGCAAGCATGAG+AGG | 0.590023 | 5:+40438867 | None:intergenic |
| GCAGAAGTAACAACGAAAGG+AGG | 0.625698 | 5:-40439268 | MsG0580026606.01.T01:CDS |
| AGGGCAGAAGTAACAACGAA+AGG | 0.626664 | 5:-40439271 | MsG0580026606.01.T01:CDS |
| GAATAGCCTCACAGTTACAA+GGG | 0.627441 | 5:-40439290 | MsG0580026606.01.T01:CDS |
| TGATGAGATTTAGATCAGTG+AGG | 0.629185 | 5:+40441130 | None:intergenic |
| CTATTGGAGAAGAGTTTCTG+AGG | 0.630341 | 5:-40439988 | MsG0580026606.01.T01:intron |
| CTCTGCACCACCGACAGAGT+CGG | 0.631498 | 5:-40439346 | MsG0580026606.01.T01:CDS |
| GTTGATAGTGCTAACAAACA+AGG | 0.636397 | 5:-40441177 | MsG0580026606.01.T01:CDS |
| TAATAGGCCGACTCTGTCGG+TGG | 0.637822 | 5:+40439339 | None:intergenic |
| AACTGACCAAGATGGAAACA+AGG | 0.648970 | 5:-40440950 | MsG0580026606.01.T01:CDS |
| CTTCTGCCCTTGTAACTGTG+AGG | 0.651693 | 5:+40439284 | None:intergenic |
| GATGGTGGATGGTTCATGGA+TGG | 0.659799 | 5:-40441084 | MsG0580026606.01.T01:intron |
| TATATACCTGAATATGCTTG+TGG | 0.661354 | 5:+40440227 | None:intergenic |
| TAAACATACCCTTATAACAG+TGG | 0.663440 | 5:+40441313 | None:intergenic |
| GATCTTGTAGGAGAATCTTG+AGG | 0.691540 | 5:+40439120 | None:intergenic |
| ATGCTAATATTGATGCTGAG+GGG | 0.720303 | 5:-40440250 | MsG0580026606.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAAATAATACTATAAT+AGG | + | Chr5:40439420-40439439 | None:intergenic | 10.0% |
| !!! | ATTGATAATCTTAAATTTTT+TGG | - | Chr5:40440057-40440076 | MsG0580026606.01.T01:intron | 10.0% |
| !!! | TTGATAATCTTAAATTTTTT+GGG | - | Chr5:40440058-40440077 | MsG0580026606.01.T01:intron | 10.0% |
| !! | CTATTTACTAAATATTGTTT+AGG | + | Chr5:40441548-40441567 | None:intergenic | 15.0% |
| !! | TATATATTTATAGGAAAAAG+TGG | + | Chr5:40440029-40440048 | None:intergenic | 15.0% |
| !! | TATATTTGATTGTATATTGT+AGG | - | Chr5:40440983-40441002 | MsG0580026606.01.T01:intron | 15.0% |
| !! | TTTAATCTTTACAATAAACA+TGG | - | Chr5:40440884-40440903 | MsG0580026606.01.T01:intron | 15.0% |
| !!! | CACATGTTATTTAAAATAAA+GGG | + | Chr5:40441410-40441429 | None:intergenic | 15.0% |
| !!! | TAAAAAGCTTATTCTTTTAT+GGG | - | Chr5:40439204-40439223 | MsG0580026606.01.T01:CDS | 15.0% |
| !!! | TAAATTTTTGATGTTTTCTA+TGG | - | Chr5:40438909-40438928 | MsG0580026606.01.T01:three_prime_UTR | 15.0% |
| !!! | TCACATGTTATTTAAAATAA+AGG | + | Chr5:40441411-40441430 | None:intergenic | 15.0% |
| !!! | TGATAATCTTAAATTTTTTG+GGG | - | Chr5:40440059-40440078 | MsG0580026606.01.T01:intron | 15.0% |
| !!! | TTAAAAAGCTTATTCTTTTA+TGG | - | Chr5:40439203-40439222 | MsG0580026606.01.T01:CDS | 15.0% |
| !!! | TTGTTTTGTTAATTTGTTAA+GGG | - | Chr5:40441694-40441713 | MsG0580026606.01.T01:intron | 15.0% |
| !!! | TTTGTTTTGTTAATTTGTTA+AGG | - | Chr5:40441693-40441712 | MsG0580026606.01.T01:intron | 15.0% |
| !!! | TTTTTTTGTTGTTGAAATTT+TGG | - | Chr5:40439847-40439866 | MsG0580026606.01.T01:intron | 15.0% |
| !! | AAAACAAGAACAAAAACAAA+AGG | + | Chr5:40438976-40438995 | None:intergenic | 20.0% |
| !! | ATACTATAATAGGATAATGA+TGG | + | Chr5:40439410-40439429 | None:intergenic | 20.0% |
| !! | ATCAAAATCACTAAATTAAG+TGG | + | Chr5:40441276-40441295 | None:intergenic | 20.0% |
| !! | ATGTTTCTTCTTACTATTAT+TGG | - | Chr5:40439436-40439455 | MsG0580026606.01.T01:intron | 20.0% |
| !! | GTTTATTGTAAAGATTAAAG+TGG | + | Chr5:40440883-40440902 | None:intergenic | 20.0% |
| !! | TAAGAATAGATTATCTAACA+TGG | + | Chr5:40441358-40441377 | None:intergenic | 20.0% |
| !! | TACTATAATAGGATAATGAT+GGG | + | Chr5:40439409-40439428 | None:intergenic | 20.0% |
| !! | TCATTTGTATATAACTCATT+TGG | - | Chr5:40442330-40442349 | MsG0580026606.01.T01:five_prime_UTR | 20.0% |
| !! | TTATTCATCTTCTTTACAAT+TGG | - | Chr5:40439262-40439281 | MsG0580026606.01.T01:CDS | 20.0% |
| !!! | AAGTTTGATTTTTTATGTTC+TGG | - | Chr5:40440085-40440104 | MsG0580026606.01.T01:intron | 20.0% |
| !!! | ACATGTTTATTTTATACAAG+TGG | - | Chr5:40441600-40441619 | MsG0580026606.01.T01:intron | 20.0% |
| !!! | GATAATCTTAAATTTTTTGG+GGG | - | Chr5:40440060-40440079 | MsG0580026606.01.T01:intron | 20.0% |
| !!! | GTGTAGTTTTGTTAAAATTA+CGG | + | Chr5:40441185-40441204 | None:intergenic | 20.0% |
| !!! | TTATTTAAAATAAAGGGTCA+TGG | + | Chr5:40441404-40441423 | None:intergenic | 20.0% |
| ! | AAAAAAAATAGTACCTTGGA+GGG | + | Chr5:40439633-40439652 | None:intergenic | 25.0% |
| ! | AAAAAGAGGAATATTTGTCA+TGG | + | Chr5:40439317-40439336 | None:intergenic | 25.0% |
| ! | AAAAGAGGAATATTTGTCAT+GGG | + | Chr5:40439316-40439335 | None:intergenic | 25.0% |
| ! | AAAGTAAACTAACAAGATTG+TGG | + | Chr5:40441494-40441513 | None:intergenic | 25.0% |
| ! | ATACAAGATAAACAATGAAG+AGG | + | Chr5:40441310-40441329 | None:intergenic | 25.0% |
| ! | ATGCAAAAAAAATAGTACCT+TGG | + | Chr5:40439637-40439656 | None:intergenic | 25.0% |
| ! | ATTACATCAAGCATATAGAT+GGG | - | Chr5:40441009-40441028 | MsG0580026606.01.T01:intron | 25.0% |
| ! | ATTATCTAACATGGAAAAGT+AGG | + | Chr5:40441349-40441368 | None:intergenic | 25.0% |
| ! | CCTTAATCAAGAACTATAAT+GGG | - | Chr5:40438800-40438819 | MsG0580026606.01.T01:three_prime_UTR | 25.0% |
| ! | TATTACATCAAGCATATAGA+TGG | - | Chr5:40441008-40441027 | MsG0580026606.01.T01:intron | 25.0% |
| ! | TATTGTACAGTTGAAAGATT+TGG | - | Chr5:40442066-40442085 | MsG0580026606.01.T01:intron | 25.0% |
| ! | TCAACAAGTAGAAAAATAAG+AGG | + | Chr5:40439699-40439718 | None:intergenic | 25.0% |
| ! | TCCTTAATCAAGAACTATAA+TGG | - | Chr5:40438799-40438818 | MsG0580026606.01.T01:three_prime_UTR | 25.0% |
| ! | TCTAAATCTCATCATAACTA+AGG | - | Chr5:40439955-40439974 | MsG0580026606.01.T01:intron | 25.0% |
| ! | TGTGTTTAGTTAGCAAAATA+TGG | - | Chr5:40439158-40439177 | MsG0580026606.01.T01:CDS | 25.0% |
| ! | TGTTGTTACTATTGAATGTA+GGG | - | Chr5:40440740-40440759 | MsG0580026606.01.T01:intron | 25.0% |
| ! | TTGATTAAGGATTGATGAAA+TGG | + | Chr5:40438790-40438809 | None:intergenic | 25.0% |
| ! | TTTCAAAGTTTACACAATCA+AGG | + | Chr5:40442297-40442316 | None:intergenic | 25.0% |
| !! | AAAGTCAATTTGTATTTTGC+AGG | - | Chr5:40439877-40439896 | MsG0580026606.01.T01:intron | 25.0% |
| !! | ATTTTATACAAGTGGCAATT+AGG | - | Chr5:40441608-40441627 | MsG0580026606.01.T01:intron | 25.0% |
| !! | CTTATTCTTTTATGGGTTTT+TGG | - | Chr5:40439211-40439230 | MsG0580026606.01.T01:CDS | 25.0% |
| !! | GATTTGTATTGGCAATAATT+TGG | - | Chr5:40441141-40441160 | MsG0580026606.01.T01:CDS | 25.0% |
| !! | GTAAAATTTCAAGATTGGTT+CGG | + | Chr5:40438763-40438782 | None:intergenic | 25.0% |
| !! | TTCTATGGTTTTTGTCTTTT+GGG | - | Chr5:40438924-40438943 | MsG0580026606.01.T01:three_prime_UTR | 25.0% |
| !! | TTTCTATGGTTTTTGTCTTT+TGG | - | Chr5:40438923-40438942 | MsG0580026606.01.T01:three_prime_UTR | 25.0% |
| !! | TTTTTATGTTCTATGTTTGC+AGG | - | Chr5:40439492-40439511 | MsG0580026606.01.T01:intron | 25.0% |
| !!! | ACTTGTTGATTGTTTTTTCA+GGG | - | Chr5:40439710-40439729 | MsG0580026606.01.T01:intron | 25.0% |
| !!! | ATGCTGCATTTATGTTTTTA+TGG | - | Chr5:40439812-40439831 | MsG0580026606.01.T01:intron | 25.0% |
| !!! | CTTTTGATTTTCATTGGTTA+TGG | - | Chr5:40439469-40439488 | MsG0580026606.01.T01:intron | 25.0% |
| !!! | GTTCTTGTTTTTTGTTTCTT+TGG | - | Chr5:40438985-40439004 | MsG0580026606.01.T01:three_prime_UTR | 25.0% |
| !!! | TACTAGCTTTTGATTTTCAT+TGG | - | Chr5:40439463-40439482 | MsG0580026606.01.T01:intron | 25.0% |
| !!! | TACTTGTTGATTGTTTTTTC+AGG | - | Chr5:40439709-40439728 | MsG0580026606.01.T01:intron | 25.0% |
| !!! | TGTTTTTTGTTTCTTTGGTT+TGG | - | Chr5:40438990-40439009 | MsG0580026606.01.T01:three_prime_UTR | 25.0% |
| AAGGCTTATATTTCTTCTGA+TGG | - | Chr5:40439974-40439993 | MsG0580026606.01.T01:intron | 30.0% | |
| AATCTTGCTAGTTGTGATAA+TGG | - | Chr5:40441433-40441452 | MsG0580026606.01.T01:intron | 30.0% | |
| ACAAGATCATCAATCTTTAG+TGG | - | Chr5:40441971-40441990 | MsG0580026606.01.T01:intron | 30.0% | |
| CAAAAAAAATAGTACCTTGG+AGG | + | Chr5:40439634-40439653 | None:intergenic | 30.0% | |
| CAAATGTTGATGTTGTTAAC+TGG | - | Chr5:40440700-40440719 | MsG0580026606.01.T01:intron | 30.0% | |
| CAATTTGTGTTACCTAATTG+AGG | + | Chr5:40439049-40439068 | None:intergenic | 30.0% | |
| CAGTTAACAACATCAACATT+TGG | + | Chr5:40440702-40440721 | None:intergenic | 30.0% | |
| CCCATTATAGTTCTTGATTA+AGG | + | Chr5:40438803-40438822 | None:intergenic | 30.0% | |
| CTGTTGTTACTATTGAATGT+AGG | - | Chr5:40440739-40440758 | MsG0580026606.01.T01:intron | 30.0% | |
| GATCTTTGTTAACTTTGGTT+TGG | - | Chr5:40442008-40442027 | MsG0580026606.01.T01:intron | 30.0% | |
| GTAACACAATACTCAAAGTA+GGG | - | Chr5:40441917-40441936 | MsG0580026606.01.T01:intron | 30.0% | |
| GTAGGGTAAAATTTCAAGAT+TGG | + | Chr5:40438768-40438787 | None:intergenic | 30.0% | |
| GTCTAGATCTTTGTTAACTT+TGG | - | Chr5:40442003-40442022 | MsG0580026606.01.T01:intron | 30.0% | |
| GTTCTTAGATTTCTGTTTCA+TGG | - | Chr5:40438873-40438892 | MsG0580026606.01.T01:three_prime_UTR | 30.0% | |
| TAAACATACCCTTATAACAG+TGG | + | Chr5:40439766-40439785 | None:intergenic | 30.0% | |
| TAAATGCAGCATACTCAAAA+AGG | + | Chr5:40439804-40439823 | None:intergenic | 30.0% | |
| TAAGGATTGATGAAATGGTA+GGG | + | Chr5:40438785-40438804 | None:intergenic | 30.0% | |
| TATATACCTGAATATGCTTG+TGG | + | Chr5:40440852-40440871 | None:intergenic | 30.0% | |
| TCAAAATGCCACTGTTATAA+GGG | - | Chr5:40439755-40439774 | MsG0580026606.01.T01:intron | 30.0% | |
| TCAACAATGTACATAGTTAG+TGG | + | Chr5:40440243-40440262 | None:intergenic | 30.0% | |
| TTAAGGATTGATGAAATGGT+AGG | + | Chr5:40438786-40438805 | None:intergenic | 30.0% | |
| TTACTATTGAATGTAGGGAT+AGG | - | Chr5:40440745-40440764 | MsG0580026606.01.T01:intron | 30.0% | |
| TTCAGGGTTGTAATTGATAA+TGG | - | Chr5:40439726-40439745 | MsG0580026606.01.T01:intron | 30.0% | |
| TTGAACTTAACCACATTTGT+TGG | - | Chr5:40441512-40441531 | MsG0580026606.01.T01:five_prime_UTR | 30.0% | |
| TTTAATGTAACTGACCAAGA+TGG | - | Chr5:40440118-40440137 | MsG0580026606.01.T01:intron | 30.0% | |
| TTTGACAGATATGCAATATG+TGG | - | Chr5:40440797-40440816 | MsG0580026606.01.T01:intron | 30.0% | |
| ! | ATCAGATGATGTTTGATGAT+AGG | - | Chr5:40440632-40440651 | MsG0580026606.01.T01:intron | 30.0% |
| ! | CTAAAGATTGATGATCTTGT+AGG | + | Chr5:40441971-40441990 | None:intergenic | 30.0% |
| ! | GAAGTGTGACTTTAGTTTAA+GGG | - | Chr5:40442112-40442131 | MsG0580026606.01.T01:intron | 30.0% |
| ! | GTGTTCTTTTTACTACAACT+TGG | - | Chr5:40439352-40439371 | MsG0580026606.01.T01:CDS | 30.0% |
| ! | GTTATTTCAGTCTCATTACA+TGG | - | Chr5:40439573-40439592 | MsG0580026606.01.T01:intron | 30.0% |
| ! | TACATTGTTGATGCCATTTA+TGG | - | Chr5:40440252-40440271 | MsG0580026606.01.T01:CDS | 30.0% |
| ! | TCAGATGATGTTTGATGATA+GGG | - | Chr5:40440633-40440652 | MsG0580026606.01.T01:intron | 30.0% |
| ! | TTTCTGCATCTGATTTTACA+GGG | + | Chr5:40441037-40441056 | None:intergenic | 30.0% |
| ! | TTTTCGTTAATGCCTCAATT+AGG | - | Chr5:40439034-40439053 | MsG0580026606.01.T01:three_prime_UTR | 30.0% |
| !! | AATAGGATAATGATGGGTTA+AGG | + | Chr5:40439403-40439422 | None:intergenic | 30.0% |
| !! | TTAGTTTTCACTAATCACCA+TGG | - | Chr5:40442233-40442252 | MsG0580026606.01.T01:intron | 30.0% |
| !!! | TAGTGATTTTGATTTCTGCA+GGG | - | Chr5:40441283-40441302 | MsG0580026606.01.T01:intron | 30.0% |
| !!! | TTAGTGATTTTGATTTCTGC+AGG | - | Chr5:40441282-40441301 | MsG0580026606.01.T01:intron | 30.0% |
| !!! | TTTTGGCTTTCTTCAATAAG+TGG | - | Chr5:40439228-40439247 | MsG0580026606.01.T01:CDS | 30.0% |
| AAAGTTAAAGCAAGCATGAG+AGG | + | Chr5:40442212-40442231 | None:intergenic | 35.0% | |
| AAGTGGCAATTAGGTATTCT+TGG | - | Chr5:40441617-40441636 | MsG0580026606.01.T01:intron | 35.0% | |
| AATCGTTAGTTGGAGAAAGA+AGG | - | Chr5:40442260-40442279 | MsG0580026606.01.T01:intron | 35.0% | |
| ACAACCAAACACTTCCTAAA+GGG | + | Chr5:40442175-40442194 | None:intergenic | 35.0% | |
| AGGAGAATCATTCACACAAA+AGG | + | Chr5:40438956-40438975 | None:intergenic | 35.0% | |
| ATGCTAATATTGATGCTGAG+GGG | - | Chr5:40440826-40440845 | MsG0580026606.01.T01:intron | 35.0% | |
| CAAATGCAACATAGTGAATG+CGG | - | Chr5:40440416-40440435 | MsG0580026606.01.T01:CDS | 35.0% | |
| CACTAAATTAAGTGGATGCT+TGG | + | Chr5:40441268-40441287 | None:intergenic | 35.0% | |
| CATGCTAATATTGATGCTGA+GGG | - | Chr5:40440825-40440844 | MsG0580026606.01.T01:intron | 35.0% | |
| CATTCACTATGTTGCATTTG+AGG | + | Chr5:40440416-40440435 | None:intergenic | 35.0% | |
| CTAAGACGATTGAATCGATT+AGG | - | Chr5:40441884-40441903 | MsG0580026606.01.T01:intron | 35.0% | |
| CTCAAAATGCCACTGTTATA+AGG | - | Chr5:40439754-40439773 | MsG0580026606.01.T01:intron | 35.0% | |
| CTTGAGTTATAGTACTTGAG+TGG | - | Chr5:40441116-40441135 | MsG0580026606.01.T01:CDS | 35.0% | |
| GAATCGATTAGGCAAACAAT+TGG | - | Chr5:40441895-40441914 | MsG0580026606.01.T01:intron | 35.0% | |
| GACCAAGACTAATCCATAAA+TGG | + | Chr5:40440268-40440287 | None:intergenic | 35.0% | |
| GCAATAATTTGGCAGAATCA+CGG | - | Chr5:40441152-40441171 | MsG0580026606.01.T01:CDS | 35.0% | |
| GCTTATATTTCTTCTGATGG+TGG | - | Chr5:40439977-40439996 | MsG0580026606.01.T01:intron | 35.0% | |
| GGAGAATCATTCACACAAAA+GGG | + | Chr5:40438955-40438974 | None:intergenic | 35.0% | |
| GGGTTATAAGGTGATTTCAT+TGG | - | Chr5:40440953-40440972 | MsG0580026606.01.T01:CDS | 35.0% | |
| GGTAACACAATACTCAAAGT+AGG | - | Chr5:40441916-40441935 | MsG0580026606.01.T01:intron | 35.0% | |
| TACAACCAAACACTTCCTAA+AGG | + | Chr5:40442176-40442195 | None:intergenic | 35.0% | |
| TACGTGTTACGTTCGATAAT+AGG | + | Chr5:40441756-40441775 | None:intergenic | 35.0% | |
| TAGAAAGTGAGTGTCTCATT+TGG | - | Chr5:40440177-40440196 | MsG0580026606.01.T01:intron | 35.0% | |
| TCAACTGCTATTCAACTAAC+CGG | + | Chr5:40441461-40441480 | None:intergenic | 35.0% | |
| TCATGCTAATATTGATGCTG+AGG | - | Chr5:40440824-40440843 | MsG0580026606.01.T01:intron | 35.0% | |
| TGATGAGATTTAGATCAGTG+AGG | + | Chr5:40439949-40439968 | None:intergenic | 35.0% | |
| TTCTTTCTCCAACTAACGAT+TGG | + | Chr5:40442261-40442280 | None:intergenic | 35.0% | |
| TTTCTCTCTCACTTTCTTTC+TGG | - | Chr5:40439127-40439146 | MsG0580026606.01.T01:three_prime_UTR | 35.0% | |
| ! | ACTATGTTGCATTTGAGGTT+TGG | + | Chr5:40440411-40440430 | None:intergenic | 35.0% |
| ! | CTTGAGTGGATGATTTGTAT+TGG | - | Chr5:40441130-40441149 | MsG0580026606.01.T01:CDS | 35.0% |
| ! | CTTTCTGCATCTGATTTTAC+AGG | + | Chr5:40441038-40441057 | None:intergenic | 35.0% |
| ! | GGAAGTGTGACTTTAGTTTA+AGG | - | Chr5:40442111-40442130 | MsG0580026606.01.T01:intron | 35.0% |
| ! | GGTAACAGATGAAGTCATTT+TGG | - | Chr5:40440147-40440166 | MsG0580026606.01.T01:intron | 35.0% |
| ! | TATAACAGTGGCATTTTGAG+AGG | + | Chr5:40439754-40439773 | None:intergenic | 35.0% |
| ! | TGACTTTAGTTTAAGGGAGT+AGG | - | Chr5:40442118-40442137 | MsG0580026606.01.T01:intron | 35.0% |
| ! | TGTTGTTAACTGGTCTGATA+AGG | - | Chr5:40440710-40440729 | MsG0580026606.01.T01:intron | 35.0% |
| ! | TTCTGCATCTGATTTTACAG+GGG | + | Chr5:40441036-40441055 | None:intergenic | 35.0% |
| ! | TTTGGAGATGCAAAAAGTGT+TGG | - | Chr5:40442084-40442103 | MsG0580026606.01.T01:intron | 35.0% |
| ! | TTTTGTCAAGCCAACAAATG+TGG | + | Chr5:40441525-40441544 | None:intergenic | 35.0% |
| !! | ATATTTCTTCTGATGGTGGA+TGG | - | Chr5:40439981-40440000 | MsG0580026606.01.T01:intron | 35.0% |
| !! | GTTGATAGTGCTAACAAACA+AGG | - | Chr5:40439899-40439918 | MsG0580026606.01.T01:intron | 35.0% |
| !! | TGCCATTTATGGATTAGTCT+TGG | - | Chr5:40440263-40440282 | MsG0580026606.01.T01:CDS | 35.0% |
| !! | TGTTGGTGTTAAACAAACAC+TGG | - | Chr5:40440318-40440337 | MsG0580026606.01.T01:CDS | 35.0% |
| !!! | AGGTAACCTTTTTTAGCAGT+TGG | + | Chr5:40439383-40439402 | None:intergenic | 35.0% |
| !!! | TCACTTTCTTTCTGGCTTTT+GGG | - | Chr5:40439135-40439154 | MsG0580026606.01.T01:three_prime_UTR | 35.0% |
| AACTGACCAAGATGGAAACA+AGG | - | Chr5:40440126-40440145 | MsG0580026606.01.T01:intron | 40.0% | |
| ACAGACTTGTGAGATTCCTT+TGG | - | Chr5:40440909-40440928 | MsG0580026606.01.T01:intron | 40.0% | |
| AGAATAGCCTCACAGTTACA+AGG | - | Chr5:40441785-40441804 | MsG0580026606.01.T01:intron | 40.0% | |
| AGTAGTTGGAAAGCAGATTC+AGG | + | Chr5:40440290-40440309 | None:intergenic | 40.0% | |
| ATTCGACGCATACTGATAGA+AGG | - | Chr5:40440605-40440624 | MsG0580026606.01.T01:intron | 40.0% | |
| ATTGTCTTGAAGCTCGCTAT+TGG | - | Chr5:40441072-40441091 | MsG0580026606.01.T01:intron | 40.0% | |
| CAACTGCTATTCAACTAACC+GGG | + | Chr5:40441460-40441479 | None:intergenic | 40.0% | |
| CACACAGCAATAGAGCTTAT+GGG | - | Chr5:40440343-40440362 | MsG0580026606.01.T01:intron | 40.0% | |
| CCAACAGATCTCATAGTAGT+TGG | + | Chr5:40440304-40440323 | None:intergenic | 40.0% | |
| CCAACTACTATGAGATCTGT+TGG | - | Chr5:40440301-40440320 | MsG0580026606.01.T01:CDS | 40.0% | |
| CTATTGGAGAAGAGTTTCTG+AGG | - | Chr5:40441088-40441107 | MsG0580026606.01.T01:CDS | 40.0% | |
| CTGTACTTTGCTGGGTTATA+AGG | - | Chr5:40440941-40440960 | MsG0580026606.01.T01:CDS | 40.0% | |
| GAATAGCCTCACAGTTACAA+GGG | - | Chr5:40441786-40441805 | MsG0580026606.01.T01:intron | 40.0% | |
| GAATCTTGAGGTACAGATTC+AGG | + | Chr5:40441947-40441966 | None:intergenic | 40.0% | |
| GATCTTGTAGGAGAATCTTG+AGG | + | Chr5:40441959-40441978 | None:intergenic | 40.0% | |
| GCAGAAAGAGAGAGAAAAAG+AGG | + | Chr5:40439331-40439350 | None:intergenic | 40.0% | |
| GCTACACCAACTGCTAAAAA+AGG | - | Chr5:40439374-40439393 | MsG0580026606.01.T01:intron | 40.0% | |
| GTTAACACTTTCTACGTTCG+CGG | - | Chr5:40441838-40441857 | MsG0580026606.01.T01:intron | 40.0% | |
| TAGAGCTTATGGGAAGTGAT+AGG | - | Chr5:40440353-40440372 | MsG0580026606.01.T01:intron | 40.0% | |
| TTAGAAGAATGAACCCTCCA+AGG | - | Chr5:40439617-40439636 | MsG0580026606.01.T01:intron | 40.0% | |
| ! | ACAGTGTCGAAAACAAGCTT+TGG | + | Chr5:40440771-40440790 | None:intergenic | 40.0% |
| ! | CTGTTACCTTGTTTCCATCT+TGG | + | Chr5:40440135-40440154 | None:intergenic | 40.0% |
| !! | GATGCAAAAAGTGTTGGTAG+AGG | - | Chr5:40442090-40442109 | MsG0580026606.01.T01:intron | 40.0% |
| !! | TTGACCCTTTAGGAAGTGTT+TGG | - | Chr5:40442168-40442187 | MsG0580026606.01.T01:intron | 40.0% |
| !!! | CTCACTTTCTTTCTGGCTTT+TGG | - | Chr5:40439134-40439153 | MsG0580026606.01.T01:three_prime_UTR | 40.0% |
| AGCTTGTGTAATGTGCTTGG+TGG | - | Chr5:40440541-40440560 | MsG0580026606.01.T01:intron | 45.0% | |
| AGGAGCTTGTGTAATGTGCT+TGG | - | Chr5:40440538-40440557 | MsG0580026606.01.T01:intron | 45.0% | |
| AGGGCAGAAGTAACAACGAA+AGG | - | Chr5:40441805-40441824 | MsG0580026606.01.T01:intron | 45.0% | |
| AGTACAGACCAAGCAACCAA+AGG | + | Chr5:40440928-40440947 | None:intergenic | 45.0% | |
| ATGCAACATAGTGAATGCGG+AGG | - | Chr5:40440419-40440438 | MsG0580026606.01.T01:CDS | 45.0% | |
| CAGCATACTCAAAAAGGAGC+AGG | + | Chr5:40439798-40439817 | None:intergenic | 45.0% | |
| CCAACTAACGATTGGATCCA+TGG | + | Chr5:40442253-40442272 | None:intergenic | 45.0% | |
| CCACACAGCAATAGAGCTTA+TGG | - | Chr5:40440342-40440361 | MsG0580026606.01.T01:intron | 45.0% | |
| CCATAAGCTCTATTGCTGTG+TGG | + | Chr5:40440345-40440364 | None:intergenic | 45.0% | |
| CCATGGATCCAATCGTTAGT+TGG | - | Chr5:40442250-40442269 | MsG0580026606.01.T01:intron | 45.0% | |
| GCAGAAGTAACAACGAAAGG+AGG | - | Chr5:40441808-40441827 | MsG0580026606.01.T01:intron | 45.0% | |
| GTGAGATTCCTTTGGTTGCT+TGG | - | Chr5:40440917-40440936 | MsG0580026606.01.T01:CDS | 45.0% | |
| TCTCAGAAGCTTGACCCTTT+AGG | - | Chr5:40442158-40442177 | MsG0580026606.01.T01:intron | 45.0% | |
| TGCTTGGTCTGTACTTTGCT+GGG | - | Chr5:40440933-40440952 | MsG0580026606.01.T01:CDS | 45.0% | |
| TTGCTTGGTCTGTACTTTGC+TGG | - | Chr5:40440932-40440951 | MsG0580026606.01.T01:CDS | 45.0% | |
| ! | CATAGTGAATGCGGAGGTTT+TGG | - | Chr5:40440425-40440444 | MsG0580026606.01.T01:CDS | 45.0% |
| ! | TTGTGTAATGTGCTTGGTGG+TGG | - | Chr5:40440544-40440563 | MsG0580026606.01.T01:intron | 45.0% |
| !! | GCTAGTTGTGATAATGGTCC+CGG | - | Chr5:40441439-40441458 | MsG0580026606.01.T01:intron | 45.0% |
| !! | TGGAGAAGAGTTTCTGAGGT+AGG | - | Chr5:40441092-40441111 | MsG0580026606.01.T01:CDS | 45.0% |
| !! | TTCTGATGGTGGATGGTTCA+TGG | - | Chr5:40439988-40440007 | MsG0580026606.01.T01:intron | 45.0% |
| !! | TTATCAATATATATATTTAT+AGG | + | Chr5:40440038-40440057 | None:intergenic | 5.0% |
| CTTATGGGAAGTGATAGGCC+AGG | - | Chr5:40440358-40440377 | MsG0580026606.01.T01:intron | 50.0% | |
| CTTCTGCCCTTGTAACTGTG+AGG | + | Chr5:40441795-40441814 | None:intergenic | 50.0% | |
| GCAGAGGCTTTCGCTAATCA+AGG | - | Chr5:40440518-40440537 | MsG0580026606.01.T01:intron | 50.0% | |
| ! | CGATAATAGGCCGACTCTGT+CGG | + | Chr5:40441743-40441762 | None:intergenic | 50.0% |
| !! | ATGTGCTTGGTGGTGGAAAC+AGG | - | Chr5:40440551-40440570 | MsG0580026606.01.T01:intron | 50.0% |
| !! | CACTCACTCTGAAGCAATCC+TGG | + | Chr5:40440379-40440398 | None:intergenic | 50.0% |
| !! | CTGCTATAACTGACTCGCAG+AGG | - | Chr5:40440502-40440521 | MsG0580026606.01.T01:CDS | 50.0% |
| !! | GATGGTGGATGGTTCATGGA+TGG | - | Chr5:40439992-40440011 | MsG0580026606.01.T01:CDS | 50.0% |
| !! | GGTGGTGGAAACAGGAAAAG+AGG | - | Chr5:40440559-40440578 | MsG0580026606.01.T01:intron | 50.0% |
| CTGTGATGCATGTGACGACG+AGG | - | Chr5:40440470-40440489 | MsG0580026606.01.T01:CDS | 55.0% | |
| GAGGGGCCACAAGCATATTC+AGG | - | Chr5:40440843-40440862 | MsG0580026606.01.T01:intron | 55.0% | |
| GCATGTGACGACGAGGAAAC+AGG | - | Chr5:40440477-40440496 | MsG0580026606.01.T01:CDS | 55.0% | |
| TTCTACGTTCGCGGAGCTTC+TGG | - | Chr5:40441847-40441866 | MsG0580026606.01.T01:intron | 55.0% | |
| ! | TAATAGGCCGACTCTGTCGG+TGG | + | Chr5:40441740-40441759 | None:intergenic | 55.0% |
| CTCTGCACCACCGACAGAGT+CGG | - | Chr5:40441730-40441749 | MsG0580026606.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 40438712 | 40442386 | 40438712 | ID=MsG0580026606.01;Name=MsG0580026606.01 |
| Chr5 | mRNA | 40438712 | 40442386 | 40438712 | ID=MsG0580026606.01.T01;Parent=MsG0580026606.01;Name=MsG0580026606.01.T01;_AED=0.20;_eAED=0.20;_QI=152|0.62|0.55|1|0.87|0.77|9|444|273 |
| Chr5 | exon | 40438712 | 40439383 | 40438712 | ID=MsG0580026606.01.T01:exon:37348;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40439989 | 40440071 | 40439989 | ID=MsG0580026606.01.T01:exon:37347;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40440234 | 40440337 | 40440234 | ID=MsG0580026606.01.T01:exon:37346;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40440394 | 40440525 | 40440394 | ID=MsG0580026606.01.T01:exon:37345;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40440916 | 40440982 | 40440916 | ID=MsG0580026606.01.T01:exon:37344;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40441085 | 40441199 | 40441085 | ID=MsG0580026606.01.T01:exon:37343;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40441322 | 40441367 | 40441322 | ID=MsG0580026606.01.T01:exon:37342;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40441460 | 40441548 | 40441460 | ID=MsG0580026606.01.T01:exon:37341;Parent=MsG0580026606.01.T01 |
| Chr5 | exon | 40442277 | 40442386 | 40442277 | ID=MsG0580026606.01.T01:exon:37340;Parent=MsG0580026606.01.T01 |
| Chr5 | five_prime_UTR | 40442277 | 40442386 | 40442277 | ID=MsG0580026606.01.T01:five_prime_utr;Parent=MsG0580026606.01.T01 |
| Chr5 | five_prime_UTR | 40441507 | 40441548 | 40441507 | ID=MsG0580026606.01.T01:five_prime_utr;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40441460 | 40441506 | 40441460 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40441322 | 40441367 | 40441322 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40441085 | 40441199 | 40441085 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40440916 | 40440982 | 40440916 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40440394 | 40440525 | 40440394 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40440234 | 40440337 | 40440234 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40439989 | 40440071 | 40439989 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | CDS | 40439156 | 40439383 | 40439156 | ID=MsG0580026606.01.T01:cds;Parent=MsG0580026606.01.T01 |
| Chr5 | three_prime_UTR | 40438712 | 40439155 | 40438712 | ID=MsG0580026606.01.T01:three_prime_utr;Parent=MsG0580026606.01.T01 |
| Gene Sequence |
| Protein sequence |
