Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780041705.01.T01 | XP_039683223.1 | 93.642 | 173 | 3 | 3 | 1 | 171 | 1 | 167 | 1.49E-112 | 327 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780041705.01.T01 | A0A396H898 | 93.023 | 172 | 4 | 3 | 2 | 171 | 3 | 168 | 2.09e-111 | 323 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048692.01 | MsG0780041705.01 | -0.801041 | 1.085708e-48 | 5.133589e-46 |
MsG0080049076.01 | MsG0780041705.01 | -0.814987 | 1.164508e-51 | 7.930249e-49 |
MsG0180000076.01 | MsG0780041705.01 | 0.832673 | 8.268158e-56 | 9.306485e-53 |
MsG0180000360.01 | MsG0780041705.01 | 0.825300 | 5.054610e-54 | 4.589155e-51 |
MsG0180000373.01 | MsG0780041705.01 | 0.808891 | 2.478492e-50 | 1.433987e-47 |
MsG0180001565.01 | MsG0780041705.01 | 0.800410 | 1.460202e-48 | 6.794456e-46 |
MsG0180003509.01 | MsG0780041705.01 | 0.816219 | 6.190683e-52 | 4.360590e-49 |
MsG0180004147.01 | MsG0780041705.01 | 0.823382 | 1.427443e-53 | 1.227012e-50 |
MsG0180004258.01 | MsG0780041705.01 | 0.825280 | 5.108452e-54 | 4.635458e-51 |
MsG0180004300.01 | MsG0780041705.01 | 0.803924 | 2.763551e-49 | 1.406296e-46 |
MsG0180005835.01 | MsG0780041705.01 | 0.802427 | 5.638798e-49 | 2.761532e-46 |
MsG0180006226.01 | MsG0780041705.01 | -0.817929 | 2.555020e-52 | 1.885976e-49 |
MsG0280006403.01 | MsG0780041705.01 | 0.807344 | 5.291085e-50 | 2.939877e-47 |
MsG0280006425.01 | MsG0780041705.01 | 0.803684 | 3.099151e-49 | 1.567248e-46 |
MsG0780040488.01 | MsG0780041705.01 | 0.822583 | 2.191980e-53 | 1.842462e-50 |
MsG0780040541.01 | MsG0780041705.01 | 0.811578 | 6.528903e-51 | 4.056254e-48 |
MsG0780041705.01 | MsG0880041860.01 | 0.807565 | 4.750030e-50 | 2.654347e-47 |
MsG0780041705.01 | MsG0880042927.01 | 0.805885 | 1.075280e-49 | 5.754714e-47 |
MsG0780041705.01 | MsG0880043431.01 | 0.802559 | 5.297669e-49 | 2.602962e-46 |
MsG0780041705.01 | MsG0880043516.01 | 0.818755 | 1.660859e-52 | 1.254156e-49 |
MsG0780041705.01 | MsG0880043921.01 | 0.811369 | 7.247799e-51 | 4.478128e-48 |
MsG0780041705.01 | MsG0880047012.01 | 0.805122 | 1.554839e-49 | 8.159527e-47 |
MsG0780041705.01 | MsG0880047226.01 | 0.813666 | 2.280476e-51 | 1.498532e-48 |
MsG0780041705.01 | MsG0880047293.01 | 0.807512 | 4.874656e-50 | 2.720424e-47 |
MsG0780041705.01 | MsG0880047466.01 | 0.837089 | 6.382822e-57 | 8.202526e-54 |
MsG0280010868.01 | MsG0780041705.01 | 0.865296 | 6.543164e-65 | 2.117939e-61 |
MsG0380013945.01 | MsG0780041705.01 | -0.823271 | 1.515613e-53 | 1.298799e-50 |
MsG0380013953.01 | MsG0780041705.01 | -0.839567 | 1.466975e-57 | 2.033771e-54 |
MsG0380013957.01 | MsG0780041705.01 | -0.817175 | 3.779834e-52 | 2.732861e-49 |
MsG0380013967.01 | MsG0780041705.01 | -0.817784 | 2.754852e-52 | 2.025447e-49 |
MsG0380013977.01 | MsG0780041705.01 | -0.812160 | 4.876259e-51 | 3.077305e-48 |
MsG0380014005.01 | MsG0780041705.01 | -0.803916 | 2.774063e-49 | 1.411362e-46 |
MsG0380014006.01 | MsG0780041705.01 | -0.842525 | 2.451522e-58 | 3.727422e-55 |
MsG0380014032.01 | MsG0780041705.01 | -0.812031 | 5.201131e-51 | 3.270597e-48 |
MsG0380014161.01 | MsG0780041705.01 | 0.834731 | 2.530169e-56 | 3.028594e-53 |
MsG0380014171.01 | MsG0780041705.01 | 0.862771 | 4.001392e-64 | 1.185669e-60 |
MsG0380014754.01 | MsG0780041705.01 | 0.846102 | 2.681236e-59 | 4.564899e-56 |
MsG0480019277.01 | MsG0780041705.01 | 0.815534 | 8.801969e-52 | 6.084624e-49 |
MsG0480019588.01 | MsG0780041705.01 | 0.835481 | 1.636382e-56 | 2.003684e-53 |
MsG0480019635.01 | MsG0780041705.01 | 0.805111 | 1.563100e-49 | 8.200375e-47 |
MsG0480020263.01 | MsG0780041705.01 | 0.812844 | 3.454691e-51 | 2.220034e-48 |
MsG0480021156.01 | MsG0780041705.01 | 0.802195 | 6.295909e-49 | 3.064880e-46 |
MsG0480021958.01 | MsG0780041705.01 | 0.812264 | 4.627592e-51 | 2.928620e-48 |
MsG0480023450.01 | MsG0780041705.01 | 0.864549 | 1.122959e-64 | 3.539261e-61 |
MsG0580024478.01 | MsG0780041705.01 | 0.850194 | 1.987626e-60 | 3.862393e-57 |
MsG0580025352.01 | MsG0780041705.01 | 0.804530 | 2.067037e-49 | 1.068248e-46 |
MsG0580025444.01 | MsG0780041705.01 | 0.806212 | 9.179785e-50 | 4.954120e-47 |
MsG0380016018.01 | MsG0780041705.01 | 0.833209 | 6.081737e-56 | 6.956345e-53 |
MsG0380017239.01 | MsG0780041705.01 | 0.802684 | 4.991866e-49 | 2.460619e-46 |
MsG0380017881.01 | MsG0780041705.01 | 0.806068 | 9.844738e-50 | 5.293276e-47 |
MsG0380018007.01 | MsG0780041705.01 | 0.803243 | 3.826423e-49 | 1.913213e-46 |
MsG0580026606.01 | MsG0780041705.01 | 0.856935 | 2.297882e-62 | 5.575233e-59 |
MsG0580028307.01 | MsG0780041705.01 | 0.834603 | 2.723912e-56 | 3.248624e-53 |
MsG0580029712.01 | MsG0780041705.01 | 0.816237 | 6.134183e-52 | 4.322781e-49 |
MsG0280006884.01 | MsG0780041705.01 | 0.822173 | 2.728937e-53 | 2.266787e-50 |
MsG0280007089.01 | MsG0780041705.01 | 0.813920 | 2.004408e-51 | 1.326162e-48 |
MsG0280007609.01 | MsG0780041705.01 | 0.805552 | 1.263089e-49 | 6.701922e-47 |
MsG0280007983.01 | MsG0780041705.01 | 0.803353 | 3.629464e-49 | 1.819849e-46 |
MsG0280008280.01 | MsG0780041705.01 | 0.831923 | 1.267736e-55 | 1.395767e-52 |
MsG0280010173.01 | MsG0780041705.01 | 0.814200 | 1.738988e-51 | 1.159302e-48 |
MsG0780038837.01 | MsG0780041705.01 | 0.813073 | 3.078561e-51 | 1.990461e-48 |
MsG0780038945.01 | MsG0780041705.01 | 0.865465 | 5.789769e-65 | 1.885494e-61 |
MsG0780039462.01 | MsG0780041705.01 | -0.810307 | 1.230211e-50 | 7.389727e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780041705.01.T01 | MTR_7g116610 | 93.452 | 168 | 3 | 3 | 6 | 171 | 3 | 164 | 6.72e-112 | 315 |
MsG0780041705.01.T01 | MTR_8g011470 | 32.121 | 165 | 84 | 4 | 6 | 168 | 8 | 146 | 2.63e-18 | 77.4 |
MsG0780041705.01.T01 | MTR_8g011470 | 35.065 | 154 | 65 | 6 | 6 | 154 | 8 | 131 | 6.59e-16 | 70.5 |
MsG0780041705.01.T01 | MTR_7g052620 | 29.379 | 177 | 85 | 7 | 4 | 171 | 6 | 151 | 3.17e-13 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780041705.01.T01 | AT5G18310 | 36.095 | 169 | 91 | 5 | 5 | 168 | 11 | 167 | 1.96e-22 | 88.6 |
MsG0780041705.01.T01 | AT5G18310 | 34.756 | 164 | 72 | 5 | 5 | 168 | 11 | 139 | 2.99e-20 | 82.0 |
MsG0780041705.01.T01 | AT5G48500 | 31.395 | 172 | 93 | 6 | 3 | 166 | 9 | 163 | 1.43e-15 | 70.5 |
MsG0780041705.01.T01 | AT5G18310 | 32.237 | 152 | 86 | 5 | 22 | 168 | 1 | 140 | 2.81e-12 | 61.2 |
Find 44 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAAACTTACATCCATATT+TGG | 0.155608 | 7:+94249361 | None:intergenic |
TTGATTTCCTTTATTCAATT+TGG | 0.191566 | 7:-94248006 | MsG0780041705.01.T01:three_prime_UTR |
GTTTCAAAGTATTGAGTTAT+TGG | 0.194110 | 7:+94249190 | None:intergenic |
TCTCATTCACCATAACATTT+TGG | 0.210593 | 7:+94248595 | None:intergenic |
TTCTTGTTCATTTGCTTCCT+TGG | 0.212136 | 7:+94248501 | None:intergenic |
TTGCATTCTTAAATTTAATT+TGG | 0.223613 | 7:-94248031 | MsG0780041705.01.T01:three_prime_UTR |
AGATCTTCATCAACAGGTTT+TGG | 0.271957 | 7:+94248441 | None:intergenic |
TTGATTTAAGAATCCAAATA+TGG | 0.274014 | 7:-94249374 | MsG0780041705.01.T01:exon |
AGTGGTCAAATACCAGCTTT+TGG | 0.338641 | 7:-94249238 | MsG0780041705.01.T01:CDS |
ATGTGTAGGCAACAAGGAAT+AGG | 0.352813 | 7:-94248629 | MsG0780041705.01.T01:intron |
TTATAGAGATCTTCATCAAC+AGG | 0.392468 | 7:+94248435 | None:intergenic |
GGGTTTCATTTCCAAGTGTC+TGG | 0.396397 | 7:-94248262 | MsG0780041705.01.T01:CDS |
GGAAGTCTCGTTGGTTGTAA+TGG | 0.406598 | 7:+94248462 | None:intergenic |
ATTCGTTACAGTTCTTCATC+TGG | 0.411701 | 7:-94249148 | MsG0780041705.01.T01:CDS |
GCACCGACCAAATTGAATAA+AGG | 0.418258 | 7:+94247999 | None:intergenic |
GTGGTTGTTACCTTTCGAAC+TGG | 0.453480 | 7:+94249052 | None:intergenic |
AAGGAAGTACCAAAATGTTA+TGG | 0.457410 | 7:-94248604 | MsG0780041705.01.T01:CDS |
TTAGTGATCATTTGTACGTT+GGG | 0.466344 | 7:-94247947 | MsG0780041705.01.T01:three_prime_UTR |
AGCTACTTCGCACAACTAAG+AGG | 0.477902 | 7:-94248401 | MsG0780041705.01.T01:CDS |
TTAGTTGTGCGAAGTAGCTC+AGG | 0.482904 | 7:+94248405 | None:intergenic |
TTTGAAACTGCAAGACAAGC+TGG | 0.494930 | 7:-94249175 | MsG0780041705.01.T01:CDS |
AACGCTAACGCATGTTGTGC+TGG | 0.495224 | 7:-94248139 | MsG0780041705.01.T01:three_prime_UTR |
AGCAGCAGGCACCAGACACT+TGG | 0.496535 | 7:+94248251 | None:intergenic |
AAATCCCAGTTTCCAAAAGC+TGG | 0.500624 | 7:+94249226 | None:intergenic |
AGGGAAAGTGTACGATGTAA+TGG | 0.505138 | 7:-94248529 | MsG0780041705.01.T01:CDS |
TGTGTAGGCAACAAGGAATA+GGG | 0.512863 | 7:-94248628 | MsG0780041705.01.T01:intron |
CTGCTGCTTGTGTTTCATGA+GGG | 0.515777 | 7:-94248236 | MsG0780041705.01.T01:exon |
GTTAGTGATCATTTGTACGT+TGG | 0.526208 | 7:-94247948 | MsG0780041705.01.T01:three_prime_UTR |
CCTGCTGCTTGTGTTTCATG+AGG | 0.531196 | 7:-94248237 | MsG0780041705.01.T01:exon |
TTTCCTTTATTCAATTTGGT+CGG | 0.541625 | 7:-94248002 | MsG0780041705.01.T01:three_prime_UTR |
CCTCATGAAACACAAGCAGC+AGG | 0.582533 | 7:+94248237 | None:intergenic |
GTTTCTATAATCAATCACTA+AGG | 0.600084 | 7:-94248198 | MsG0780041705.01.T01:three_prime_UTR |
TTATAAGAAACCAGTTCGAA+AGG | 0.603514 | 7:-94249062 | MsG0780041705.01.T01:intron |
GCTGCACGAACATGAACGTA+AGG | 0.605636 | 7:+94249115 | None:intergenic |
AAGGAAGCAAATGAACAAGA+AGG | 0.611603 | 7:-94248499 | MsG0780041705.01.T01:CDS |
TAATAGGAATGGAAGAGAAG+TGG | 0.615162 | 7:-94249256 | MsG0780041705.01.T01:intron |
TGAACATGAGAAAGCAGCAA+GGG | 0.621624 | 7:-94248548 | MsG0780041705.01.T01:CDS |
GTTGTGCGAAGTAGCTCAGG+AGG | 0.623117 | 7:+94248408 | None:intergenic |
ACGATGTAATGGAACATCCA+AGG | 0.634761 | 7:-94248518 | MsG0780041705.01.T01:CDS |
GCTACTTCGCACAACTAAGA+GGG | 0.636297 | 7:-94248400 | MsG0780041705.01.T01:intron |
AGGCAACAAGGAATAGGGAA+AGG | 0.648026 | 7:-94248623 | MsG0780041705.01.T01:CDS |
ATGAACATGAGAAAGCAGCA+AGG | 0.652015 | 7:-94248549 | MsG0780041705.01.T01:CDS |
GTTGTTATGTGTAGGCAACA+AGG | 0.682654 | 7:-94248635 | MsG0780041705.01.T01:intron |
TTGTGCGAAGTAGCTCAGGA+GGG | 0.688459 | 7:+94248409 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGCATTCTTAAATTTAATT+TGG | - | Chr7:94249276-94249295 | MsG0780041705.01.T01:intron | 15.0% |
!!! | AGTAGTACAAAAATAATTTT+TGG | - | Chr7:94248615-94248634 | MsG0780041705.01.T01:CDS | 15.0% |
!! | AAAGTTGTAAGGTTAAAATT+TGG | + | Chr7:94248319-94248338 | None:intergenic | 20.0% |
!! | AAGAACAAGAAAAAACAAAA+AGG | + | Chr7:94248280-94248299 | None:intergenic | 20.0% |
!! | AATAAACTTACATCCATATT+TGG | + | Chr7:94247949-94247968 | None:intergenic | 20.0% |
!! | ATTAACAACATTTCAAATCA+CGG | + | Chr7:94248986-94249005 | None:intergenic | 20.0% |
!! | TTGATTTAAGAATCCAAATA+TGG | - | Chr7:94247933-94247952 | MsG0780041705.01.T01:three_prime_UTR | 20.0% |
!! | TTGATTTCCTTTATTCAATT+TGG | - | Chr7:94249301-94249320 | MsG0780041705.01.T01:intron | 20.0% |
!!! | ACATTTTAATTTAGACACAA+TGG | + | Chr7:94249399-94249418 | None:intergenic | 20.0% |
!!! | ACTAAGGAAGTTTAATTTTT+TGG | - | Chr7:94249125-94249144 | MsG0780041705.01.T01:CDS | 20.0% |
!!! | GTACAAAAATAATTTTTGGT+TGG | - | Chr7:94248619-94248638 | MsG0780041705.01.T01:CDS | 20.0% |
!!! | TAATGTTTGTTGTTGTTAAT+AGG | - | Chr7:94248035-94248054 | MsG0780041705.01.T01:three_prime_UTR | 20.0% |
! | AACAAGAAAAAACAAAAAGG+TGG | + | Chr7:94248277-94248296 | None:intergenic | 25.0% |
! | AATAATGTGATGGTTAAGAA+AGG | - | Chr7:94248538-94248557 | MsG0780041705.01.T01:CDS | 25.0% |
! | AATTAAAATGTCTGTTGTCA+CGG | - | Chr7:94249408-94249427 | MsG0780041705.01.T01:five_prime_UTR | 25.0% |
! | CAATGATTATGAAAGTTGTA+AGG | + | Chr7:94248330-94248349 | None:intergenic | 25.0% |
! | CATCACATTATTAACCATAT+GGG | + | Chr7:94248530-94248549 | None:intergenic | 25.0% |
! | CCACTAGGAAATAAAAAAAT+AGG | + | Chr7:94248590-94248609 | None:intergenic | 25.0% |
! | GTTTCTATAATCAATCACTA+AGG | - | Chr7:94249109-94249128 | MsG0780041705.01.T01:CDS | 25.0% |
! | TATATGATGTTGTTATGTGT+AGG | - | Chr7:94248664-94248683 | MsG0780041705.01.T01:intron | 25.0% |
! | TTTCCTTTATTCAATTTGGT+CGG | - | Chr7:94249305-94249324 | MsG0780041705.01.T01:intron | 25.0% |
! | TTTGTGCAGAAAAAAATGTT+GGG | - | Chr7:94249025-94249044 | MsG0780041705.01.T01:intron | 25.0% |
!! | TGAGTTAGATTTTTCATTTG+AGG | + | Chr7:94248362-94248381 | None:intergenic | 25.0% |
!!! | ACTATTTACTCTGAAATTTG+TGG | - | Chr7:94248461-94248480 | MsG0780041705.01.T01:CDS | 25.0% |
!!! | CCTATTTTTTTATTTCCTAG+TGG | - | Chr7:94248587-94248606 | MsG0780041705.01.T01:CDS | 25.0% |
!!! | GTTTCAAAGTATTGAGTTAT+TGG | + | Chr7:94248120-94248139 | None:intergenic | 25.0% |
!!! | TTTGTTGTTGTTAATAGGAA+TGG | - | Chr7:94248040-94248059 | MsG0780041705.01.T01:three_prime_UTR | 25.0% |
CCATATGGTTAATAATGTGA+TGG | - | Chr7:94248528-94248547 | MsG0780041705.01.T01:CDS | 30.0% | |
CCATCACATTATTAACCATA+TGG | + | Chr7:94248531-94248550 | None:intergenic | 30.0% | |
GTTTGTGCAGAAAAAAATGT+TGG | - | Chr7:94249024-94249043 | MsG0780041705.01.T01:intron | 30.0% | |
TTAGTGATCATTTGTACGTT+GGG | - | Chr7:94249360-94249379 | MsG0780041705.01.T01:intron | 30.0% | |
TTATAAGAAACCAGTTCGAA+AGG | - | Chr7:94248245-94248264 | MsG0780041705.01.T01:CDS | 30.0% | |
TTATAGAGATCTTCATCAAC+AGG | + | Chr7:94248875-94248894 | None:intergenic | 30.0% | |
! | TCTCATTCACCATAACATTT+TGG | + | Chr7:94248715-94248734 | None:intergenic | 30.0% |
!! | AAGGAAGTACCAAAATGTTA+TGG | - | Chr7:94248703-94248722 | MsG0780041705.01.T01:intron | 30.0% |
AAGGAAGCAAATGAACAAGA+AGG | - | Chr7:94248808-94248827 | MsG0780041705.01.T01:intron | 35.0% | |
ATTCGTTACAGTTCTTCATC+TGG | - | Chr7:94248159-94248178 | MsG0780041705.01.T01:three_prime_UTR | 35.0% | |
GTTAGTGATCATTTGTACGT+TGG | - | Chr7:94249359-94249378 | MsG0780041705.01.T01:intron | 35.0% | |
TAATAGGAATGGAAGAGAAG+TGG | - | Chr7:94248051-94248070 | MsG0780041705.01.T01:three_prime_UTR | 35.0% | |
TTCTTGTTCATTTGCTTCCT+TGG | + | Chr7:94248809-94248828 | None:intergenic | 35.0% | |
! | AGATCTTCATCAACAGGTTT+TGG | + | Chr7:94248869-94248888 | None:intergenic | 35.0% |
!! | AAATACCAGCTTTTGGAAAC+TGG | - | Chr7:94248076-94248095 | MsG0780041705.01.T01:three_prime_UTR | 35.0% |
!! | AATACCAGCTTTTGGAAACT+GGG | - | Chr7:94248077-94248096 | MsG0780041705.01.T01:three_prime_UTR | 35.0% |
AAATCCCAGTTTCCAAAAGC+TGG | + | Chr7:94248084-94248103 | None:intergenic | 40.0% | |
ATGAACATGAGAAAGCAGCA+AGG | - | Chr7:94248758-94248777 | MsG0780041705.01.T01:intron | 40.0% | |
ATGTGTAGGCAACAAGGAAT+AGG | - | Chr7:94248678-94248697 | MsG0780041705.01.T01:intron | 40.0% | |
GTTGTTATGTGTAGGCAACA+AGG | - | Chr7:94248672-94248691 | MsG0780041705.01.T01:intron | 40.0% | |
TGAACATGAGAAAGCAGCAA+GGG | - | Chr7:94248759-94248778 | MsG0780041705.01.T01:intron | 40.0% | |
TGTGTAGGCAACAAGGAATA+GGG | - | Chr7:94248679-94248698 | MsG0780041705.01.T01:intron | 40.0% | |
TTGTACTACTACTAGCCACT+AGG | + | Chr7:94248605-94248624 | None:intergenic | 40.0% | |
! | ACGATGTAATGGAACATCCA+AGG | - | Chr7:94248789-94248808 | MsG0780041705.01.T01:intron | 40.0% |
! | AGGGAAAGTGTACGATGTAA+TGG | - | Chr7:94248778-94248797 | MsG0780041705.01.T01:intron | 40.0% |
! | AGTGGTCAAATACCAGCTTT+TGG | - | Chr7:94248069-94248088 | MsG0780041705.01.T01:three_prime_UTR | 40.0% |
! | GCACCGACCAAATTGAATAA+AGG | + | Chr7:94249311-94249330 | None:intergenic | 40.0% |
! | TTTGAAACTGCAAGACAAGC+TGG | - | Chr7:94248132-94248151 | MsG0780041705.01.T01:three_prime_UTR | 40.0% |
ACGAGTCATGATGACCCATA+TGG | - | Chr7:94248513-94248532 | MsG0780041705.01.T01:CDS | 45.0% | |
AGCTACTTCGCACAACTAAG+AGG | - | Chr7:94248906-94248925 | MsG0780041705.01.T01:intron | 45.0% | |
AGGCAACAAGGAATAGGGAA+AGG | - | Chr7:94248684-94248703 | MsG0780041705.01.T01:intron | 45.0% | |
GCTACTTCGCACAACTAAGA+GGG | - | Chr7:94248907-94248926 | MsG0780041705.01.T01:intron | 45.0% | |
GGGTTTCATTTCCAAGTGTC+TGG | - | Chr7:94249045-94249064 | MsG0780041705.01.T01:intron | 45.0% | |
GTGGTTGTTACCTTTCGAAC+TGG | + | Chr7:94248258-94248277 | None:intergenic | 45.0% | |
TTAGTTGTGCGAAGTAGCTC+AGG | + | Chr7:94248905-94248924 | None:intergenic | 45.0% | |
! | CTGCTGCTTGTGTTTCATGA+GGG | - | Chr7:94249071-94249090 | MsG0780041705.01.T01:CDS | 45.0% |
! | GGAAGTCTCGTTGGTTGTAA+TGG | + | Chr7:94248848-94248867 | None:intergenic | 45.0% |
!!! | ACAGGTTTTGGAAGTCTCGT+TGG | + | Chr7:94248857-94248876 | None:intergenic | 45.0% |
AACGCTAACGCATGTTGTGC+TGG | - | Chr7:94249168-94249187 | MsG0780041705.01.T01:CDS | 50.0% | |
CCTCATGAAACACAAGCAGC+AGG | + | Chr7:94249073-94249092 | None:intergenic | 50.0% | |
CTTCGCACAACTAAGAGGGT+TGG | - | Chr7:94248911-94248930 | MsG0780041705.01.T01:intron | 50.0% | |
GCTGCACGAACATGAACGTA+AGG | + | Chr7:94248195-94248214 | None:intergenic | 50.0% | |
TTGTGCGAAGTAGCTCAGGA+GGG | + | Chr7:94248901-94248920 | None:intergenic | 50.0% | |
! | CCTGCTGCTTGTGTTTCATG+AGG | - | Chr7:94249070-94249089 | MsG0780041705.01.T01:CDS | 50.0% |
GTTGTGCGAAGTAGCTCAGG+AGG | + | Chr7:94248902-94248921 | None:intergenic | 55.0% | |
AGCAGCAGGCACCAGACACT+TGG | + | Chr7:94249059-94249078 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 94247901 | 94249428 | 94247901 | ID=MsG0780041705.01;Name=MsG0780041705.01 |
Chr7 | mRNA | 94247901 | 94249428 | 94247901 | ID=MsG0780041705.01.T01;Parent=MsG0780041705.01;Name=MsG0780041705.01.T01;_AED=0.31;_eAED=0.31;_QI=51|1|1|1|1|1|4|338|171 |
Chr7 | exon | 94247901 | 94248295 | 94247901 | ID=MsG0780041705.01.T01:exon:20717;Parent=MsG0780041705.01.T01 |
Chr7 | exon | 94248401 | 94248643 | 94248401 | ID=MsG0780041705.01.T01:exon:20716;Parent=MsG0780041705.01.T01 |
Chr7 | exon | 94249063 | 94249272 | 94249063 | ID=MsG0780041705.01.T01:exon:20715;Parent=MsG0780041705.01.T01 |
Chr7 | exon | 94249372 | 94249428 | 94249372 | ID=MsG0780041705.01.T01:exon:20714;Parent=MsG0780041705.01.T01 |
Chr7 | five_prime_UTR | 94249378 | 94249428 | 94249378 | ID=MsG0780041705.01.T01:five_prime_utr;Parent=MsG0780041705.01.T01 |
Chr7 | CDS | 94249372 | 94249377 | 94249372 | ID=MsG0780041705.01.T01:cds;Parent=MsG0780041705.01.T01 |
Chr7 | CDS | 94249063 | 94249272 | 94249063 | ID=MsG0780041705.01.T01:cds;Parent=MsG0780041705.01.T01 |
Chr7 | CDS | 94248401 | 94248643 | 94248401 | ID=MsG0780041705.01.T01:cds;Parent=MsG0780041705.01.T01 |
Chr7 | CDS | 94248239 | 94248295 | 94248239 | ID=MsG0780041705.01.T01:cds;Parent=MsG0780041705.01.T01 |
Chr7 | three_prime_UTR | 94247901 | 94248238 | 94247901 | ID=MsG0780041705.01.T01:three_prime_utr;Parent=MsG0780041705.01.T01 |
Gene Sequence |
Protein sequence |