AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038945.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038945.01.T01 MTR_0027s0090 85.468 406 36 9 1 399 1 390 0.0 629
MsG0780038945.01.T01 MTR_4g019840 29.781 366 171 16 51 399 9 305 2.78e-22 96.7
MsG0780038945.01.T01 MTR_5g081460 32.642 386 189 18 44 399 18 362 1.30e-16 80.9
MsG0780038945.01.T01 MTR_2g097800 39.370 127 53 5 278 399 214 321 1.02e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038945.01.T01 AT3G54000 30.751 413 200 21 5 399 8 352 5.75e-20 90.9
MsG0780038945.01.T01 AT3G54000 32.558 344 166 18 5 330 8 303 2.38e-19 88.6
MsG0780038945.01.T01 AT3G54000 30.650 323 159 17 5 310 8 282 4.55e-12 67.0

Find 109 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAAATGTGAAGGGATTT+TGG 0.181897 7:-55637305 None:intergenic
TTTAATAGAGGAAAAGAAAA+AGG 0.220430 7:-55637266 None:intergenic
CTATATAGTCTTCAAGCTTT+AGG 0.234041 7:-55638899 None:intergenic
CTCTCCCATGTTTCGCATTT+CGG 0.242451 7:+55637218 MsG0780038945.01.T01:five_prime_UTR
CAATCAACCCTATGTGCTTT+TGG 0.244653 7:+55637793 MsG0780038945.01.T01:CDS
CTGATAGGCTGAACGCAATA+AGG 0.267631 7:+55638181 MsG0780038945.01.T01:CDS
GTCTTCAAGCTTTAGGTTAA+GGG 0.268229 7:-55638892 None:intergenic
TCCACCTCTAATGTTGAAAA+TGG 0.300073 7:+55638960 MsG0780038945.01.T01:CDS
CTGTAATACCACTGCAAATC+TGG 0.300724 7:-55639768 None:intergenic
AGTCTTCAAGCTTTAGGTTA+AGG 0.313871 7:-55638893 None:intergenic
TGCTGCTGGCTGAGGCCTGC+TGG 0.319876 7:-55639266 None:intergenic
TAATAATAATAGAAGATAAA+TGG 0.327212 7:+55639494 MsG0780038945.01.T01:three_prime_UTR
AACAACAACGTTGCTGGTTT+AGG 0.336273 7:+55638288 MsG0780038945.01.T01:CDS
GCATTCTCACAAACACCATT+AGG 0.337817 7:-55637859 None:intergenic
ATTTGGATGACGGTGAGTTC+TGG 0.349881 7:+55637396 MsG0780038945.01.T01:CDS
ATTTCATTGCTCACTGCTGC+TGG 0.359817 7:-55639280 None:intergenic
AGGGTTGTGGAGTTTGAATT+TGG 0.367866 7:-55638356 None:intergenic
TTGCTCACTGCTGCTGGCTG+AGG 0.373008 7:-55639274 None:intergenic
GGAAATTGAAGGGAAAGAAA+AGG 0.375834 7:-55637330 None:intergenic
GTTATGATTCTCAGAGGCTT+TGG 0.379710 7:-55637666 None:intergenic
CTGTTGCACCTCCAAGGCAT+AGG 0.394744 7:+55639200 MsG0780038945.01.T01:CDS
GTTGAATTTCTTGATTCAAC+AGG 0.398365 7:-55638447 None:intergenic
GGGGTATGCAGAAGCAAAAT+GGG 0.399292 7:+55638205 MsG0780038945.01.T01:CDS
GTTTCGCATTTCGGTAATCA+TGG 0.406161 7:+55637227 MsG0780038945.01.T01:five_prime_UTR
TCAAGCCAAGGTAGCCCTAA+TGG 0.411212 7:+55637844 MsG0780038945.01.T01:CDS
AGCGAAAGCGAAGAAGGTTT+CGG 0.413750 7:-55637473 None:intergenic
GAAATTGAAGGGAAAGAAAA+GGG 0.433253 7:-55637329 None:intergenic
AATAATAATAAATTGGTTTG+TGG 0.433439 7:+55639713 MsG0780038945.01.T01:three_prime_UTR
GCAGCAGCAACAATACCAGC+AGG 0.436574 7:+55639251 MsG0780038945.01.T01:CDS
AGGGCATGCGCCACTCTAGC+TGG 0.436782 7:-55638873 None:intergenic
TGATAGGCTGAACGCAATAA+GGG 0.441364 7:+55638182 MsG0780038945.01.T01:CDS
AGGGGATTTGATGTAACAAA+AGG 0.449526 7:+55639407 MsG0780038945.01.T01:three_prime_UTR
CATTCTCACAAACACCATTA+GGG 0.451029 7:-55637858 None:intergenic
AAATAATGTTAGGAGCCTCT+TGG 0.453899 7:+55639540 MsG0780038945.01.T01:three_prime_UTR
GGGGAAGAAGAATTTCTTTG+AGG 0.454444 7:-55637961 None:intergenic
AAAGCTTGAAGACTATATAG+TGG 0.470534 7:+55638902 MsG0780038945.01.T01:CDS
ACATTATTACCCCTATGCCT+TGG 0.482077 7:-55639211 None:intergenic
TTGAAAAGCGAAAGCGAAGA+AGG 0.482963 7:-55637479 None:intergenic
AATGGTTATGGTAGCAGCAC+TGG 0.484581 7:+55638402 MsG0780038945.01.T01:CDS
GGAGGAAGAAATGTTGTTGA+TGG 0.488016 7:+55638255 MsG0780038945.01.T01:CDS
TTATTACCCCTATGCCTTGG+AGG 0.489609 7:-55639208 None:intergenic
TGTTGCACCTCCAAGGCATA+GGG 0.498023 7:+55639201 MsG0780038945.01.T01:CDS
TGTTGAGCATGTTGTAGTGT+TGG 0.499882 7:-55638330 None:intergenic
GTCATTTCCAAAAGCACATA+GGG 0.500818 7:-55637800 None:intergenic
TCAGAACAAGCGAATCCATA+AGG 0.503685 7:-55637527 None:intergenic
TTATTCATAGCAAGTAACTA+AGG 0.504465 7:-55639817 None:intergenic
ATGATGAAAATGATATGAAA+TGG 0.513671 7:+55639336 MsG0780038945.01.T01:three_prime_UTR
AAACACCATTAGGGCTACCT+TGG 0.514969 7:-55637849 None:intergenic
TTTCAGCAAAGACAAACAAA+TGG 0.515645 7:+55638234 MsG0780038945.01.T01:CDS
AGCAAGTAACTAAGGTGGAC+AGG 0.516303 7:-55639809 None:intergenic
AAATGGTCCTTTGATTCGCT+TGG 0.517299 7:+55639353 MsG0780038945.01.T01:three_prime_UTR
TGTAGCTTGTGCAACTGCAT+TGG 0.518913 7:+55638848 MsG0780038945.01.T01:intron
TTTCGCATTTCGGTAATCAT+GGG 0.519762 7:+55637228 MsG0780038945.01.T01:five_prime_UTR
GGGTATGCAGAAGCAAAATG+GGG 0.523341 7:+55638206 MsG0780038945.01.T01:CDS
TAGGTTTGTCATCATCTGCA+TGG 0.523719 7:+55638307 MsG0780038945.01.T01:CDS
GATTACCGAAATGCGAAACA+TGG 0.528517 7:-55637223 None:intergenic
ACAGCTCTCATGTAGGGTTG+TGG 0.529286 7:-55638369 None:intergenic
GTCATCCAAATTCTCAGCCA+TGG 0.531206 7:-55637384 None:intergenic
GAATCATAACAACAATAACT+TGG 0.540471 7:+55637679 MsG0780038945.01.T01:CDS
GGCAACAACAAATTGCTGAT+AGG 0.541898 7:+55638166 MsG0780038945.01.T01:CDS
GAAGCAGCAAGAGAATCAAT+TGG 0.541993 7:-55637560 None:intergenic
TTTGGAGGGTAAAGTAATAG+GGG 0.542539 7:-55637980 None:intergenic
AAGCTTGAAGACTATATAGT+GGG 0.550779 7:+55638903 MsG0780038945.01.T01:CDS
AATGCTACCAAGCGAATCAA+AGG 0.551005 7:-55639360 None:intergenic
TGTCATTTCCAAAAGCACAT+AGG 0.552956 7:-55637801 None:intergenic
GGACAGGTTGGCATCAAAGA+AGG 0.554332 7:-55639793 None:intergenic
TGTGTCGTCACCGTCGTCGT+CGG 0.554477 7:-55637438 None:intergenic
AGGAAAACAGCTCTCATGTA+GGG 0.557045 7:-55638375 None:intergenic
TATGGTAGCAGCACTGGCAC+TGG 0.560323 7:+55638408 MsG0780038945.01.T01:CDS
GGCTTTGACCAGATTTGCAG+TGG 0.562137 7:+55639760 MsG0780038945.01.T01:three_prime_UTR
CAGAGGCTTTGGAATCAACA+TGG 0.562511 7:-55637655 None:intergenic
TAGCTGCTGTTGCACCTCCA+AGG 0.563262 7:+55639194 MsG0780038945.01.T01:CDS
TGCATTGGTTCCAGCTAGAG+TGG 0.566049 7:+55638863 MsG0780038945.01.T01:CDS
AAAAGGGAGAGAAAATGTGA+AGG 0.566760 7:-55637313 None:intergenic
CGCAAGGGTTCTTCAAGCCA+AGG 0.570759 7:+55637832 MsG0780038945.01.T01:CDS
AAGGAAAACAGCTCTCATGT+AGG 0.571063 7:-55638376 None:intergenic
TTTCTTGATTCAACAGGACG+AGG 0.572592 7:-55638441 None:intergenic
AAAGGGAGAGAAAATGTGAA+GGG 0.576120 7:-55637312 None:intergenic
AAATCAAGCTTCCACAGGAG+TGG 0.577332 7:+55639299 MsG0780038945.01.T01:CDS
AGTAACTAAGGTGGACAGGT+TGG 0.580001 7:-55639805 None:intergenic
CAATGAAATCAAGCTTCCAC+AGG 0.589243 7:+55639294 MsG0780038945.01.T01:CDS
GGTATGCAGAAGCAAAATGG+GGG 0.592001 7:+55638207 MsG0780038945.01.T01:CDS
ATAGGCTGAACGCAATAAGG+GGG 0.593373 7:+55638184 MsG0780038945.01.T01:CDS
TGATAATGAGAAAGTGATTG+TGG 0.597158 7:-55638033 None:intergenic
GATAGGCTGAACGCAATAAG+GGG 0.601595 7:+55638183 MsG0780038945.01.T01:CDS
CATCAGTACGTCCACTCCTG+TGG 0.602987 7:-55639310 None:intergenic
GATGCAAGTGTTGTTGCGGC+TGG 0.606152 7:-55638929 None:intergenic
AAATGACAGCAAATGCCGCA+AGG 0.606582 7:+55637816 MsG0780038945.01.T01:CDS
CAGCAAAGACAAACAAATGG+AGG 0.610080 7:+55638237 MsG0780038945.01.T01:CDS
TTGCTATGAATAATAATACA+AGG 0.610972 7:+55639827 MsG0780038945.01.T01:three_prime_UTR
AATGACAGCAAATGCCGCAA+GGG 0.612224 7:+55637817 MsG0780038945.01.T01:CDS
TGCTACCATAACCATTTCCA+AGG 0.612385 7:-55638395 None:intergenic
GGTCATTAGAAAGTCTCTCA+AGG 0.612790 7:+55639623 MsG0780038945.01.T01:three_prime_UTR
ATTACCGAAATGCGAAACAT+GGG 0.619209 7:-55637222 None:intergenic
TAGGCTGAACGCAATAAGGG+GGG 0.621088 7:+55638185 MsG0780038945.01.T01:CDS
ATTGTTGTTATGATTCTCAG+AGG 0.625609 7:-55637672 None:intergenic
TTTGGAATCAACATGGAGAG+AGG 0.627829 7:-55637648 None:intergenic
TTCATAGCAAGTAACTAAGG+TGG 0.641022 7:-55639814 None:intergenic
CAGTTTCTCTCCGACGACGA+CGG 0.644936 7:+55637428 MsG0780038945.01.T01:CDS
AAACGATGCAAGTGTTGTTG+CGG 0.650274 7:-55638933 None:intergenic
AAAGCACATAGGGTTGATTG+TGG 0.656361 7:-55637790 None:intergenic
ATGCAACAGATTCAAAGTAG+AGG 0.656365 7:-55637890 None:intergenic
ATGGCTGAGAATTTGGATGA+CGG 0.669713 7:+55637386 MsG0780038945.01.T01:CDS
AGGCTGAACGCAATAAGGGG+GGG 0.672681 7:+55638186 MsG0780038945.01.T01:CDS
GTTGCACCTCCAAGGCATAG+GGG 0.686212 7:+55639202 MsG0780038945.01.T01:CDS
AGCTTGAAGACTATATAGTG+GGG 0.692039 7:+55638904 MsG0780038945.01.T01:CDS
CTTGGCTTGAAGAACCCTTG+CGG 0.700347 7:-55637831 None:intergenic
TCGTCGGAGAGAAACTGCGG+CGG 0.707718 7:-55637422 None:intergenic
TCGTCGTCGGAGAGAAACTG+CGG 0.728597 7:-55637425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATTTATTTAATCAAAA+GGG + Chr7:55639099-55639118 MsG0780038945.01.T01:intron 10.0%
!! TAATAATAATAGAAGATAAA+TGG + Chr7:55639494-55639513 MsG0780038945.01.T01:three_prime_UTR 10.0%
!! TGTTTATTTATTTAATCAAA+AGG + Chr7:55639098-55639117 MsG0780038945.01.T01:intron 10.0%
!! TTTATTTATTTAATCAAAAG+GGG + Chr7:55639100-55639119 MsG0780038945.01.T01:intron 10.0%
!!! TTATATATTTTTTCCTTTTA+GGG + Chr7:55637722-55637741 MsG0780038945.01.T01:intron 10.0%
!!! TTTATATATTTTTTCCTTTT+AGG + Chr7:55637721-55637740 MsG0780038945.01.T01:intron 10.0%
!! AAATTATTAAATATCACAAC+CGG - Chr7:55638765-55638784 None:intergenic 15.0%
!! GGGTAATAATAATAATAAAT+TGG + Chr7:55639706-55639725 MsG0780038945.01.T01:three_prime_UTR 15.0%
!! TTATTTATTTAATCAAAAGG+GGG + Chr7:55639101-55639120 MsG0780038945.01.T01:intron 15.0%
!!! AAATCTCGTATTTTTAATAA+TGG + Chr7:55638090-55638109 MsG0780038945.01.T01:intron 15.0%
!!! AATAATAATAAATTGGTTTG+TGG + Chr7:55639713-55639732 MsG0780038945.01.T01:three_prime_UTR 15.0%
!!! AATCTCGTATTTTTAATAAT+GGG + Chr7:55638091-55638110 MsG0780038945.01.T01:intron 15.0%
!!! ATTGAGTATTTTTTTTTTGA+AGG + Chr7:55639128-55639147 MsG0780038945.01.T01:intron 15.0%
!!! TTGAGTATTTTTTTTTTGAA+GGG + Chr7:55639129-55639148 MsG0780038945.01.T01:intron 15.0%
!!! TTTTGTTTATCTTTTTTGTT+TGG + Chr7:55639675-55639694 MsG0780038945.01.T01:three_prime_UTR 15.0%
!!! TTTTTTGTTTGGTTTTATTA+GGG + Chr7:55639686-55639705 MsG0780038945.01.T01:three_prime_UTR 15.0%
!! AAAATTAACATCATCATCAT+GGG - Chr7:55638498-55638517 None:intergenic 20.0%
!! ACAATGAAAAAATTAAGAAG+GGG + Chr7:55639739-55639758 MsG0780038945.01.T01:three_prime_UTR 20.0%
!! AGACAATGAAAAAATTAAGA+AGG + Chr7:55639737-55639756 MsG0780038945.01.T01:three_prime_UTR 20.0%
!! ATGATGAAAATGATATGAAA+TGG + Chr7:55639336-55639355 MsG0780038945.01.T01:three_prime_UTR 20.0%
!! GACAATGAAAAAATTAAGAA+GGG + Chr7:55639738-55639757 MsG0780038945.01.T01:three_prime_UTR 20.0%
!! TATTTATTTAATCAAAAGGG+GGG + Chr7:55639102-55639121 MsG0780038945.01.T01:intron 20.0%
!! TTAATAGAGGAAAAGAAAAA+GGG - Chr7:55637268-55637287 None:intergenic 20.0%
!! TTGCTATGAATAATAATACA+AGG + Chr7:55639827-55639846 MsG0780038945.01.T01:three_prime_UTR 20.0%
!! TTTAATAGAGGAAAAGAAAA+AGG - Chr7:55637269-55637288 None:intergenic 20.0%
!!! AAAATCTAGTTTATAAGAGA+GGG - Chr7:55639053-55639072 None:intergenic 20.0%
!!! AATGTTTTAATGCATTTAAG+AGG + Chr7:55638570-55638589 MsG0780038945.01.T01:intron 20.0%
!!! AGTTTTATAGAAGAAACAAT+AGG + Chr7:55639435-55639454 MsG0780038945.01.T01:three_prime_UTR 20.0%
!!! ATGTTTTAATGCATTTAAGA+GGG + Chr7:55638571-55638590 MsG0780038945.01.T01:intron 20.0%
!!! CTTTTTTGTTTGGTTTTATT+AGG + Chr7:55639685-55639704 MsG0780038945.01.T01:three_prime_UTR 20.0%
!!! TGAGTATTTTTTTTTTGAAG+GGG + Chr7:55639130-55639149 MsG0780038945.01.T01:intron 20.0%
!!! TTTAAAATGTTACACAACAA+TGG + Chr7:55638620-55638639 MsG0780038945.01.T01:intron 20.0%
! AAAAAACAGAGGAAATTGAA+GGG - Chr7:55637343-55637362 None:intergenic 25.0%
! AAGAGGCTAAAAATAATGTT+AGG + Chr7:55639530-55639549 MsG0780038945.01.T01:three_prime_UTR 25.0%
! AGAAATTCAACAAAAAAACC+AGG + Chr7:55638459-55638478 MsG0780038945.01.T01:CDS 25.0%
! CAAAATTAACATCATCATCA+TGG - Chr7:55638499-55638518 None:intergenic 25.0%
! CCTAAATCATAAACGAAAAA+CGG - Chr7:55638689-55638708 None:intergenic 25.0%
! CTAAATCATAAACGAAAAAC+GGG - Chr7:55638688-55638707 None:intergenic 25.0%
! GAATCATAACAACAATAACT+TGG + Chr7:55637679-55637698 MsG0780038945.01.T01:CDS 25.0%
! TTATTCATAGCAAGTAACTA+AGG - Chr7:55639820-55639839 None:intergenic 25.0%
!! ACTTTTTGTTCTTTTTGATG+AGG + Chr7:55639601-55639620 MsG0780038945.01.T01:three_prime_UTR 25.0%
!! CAAAATCTAGTTTATAAGAG+AGG - Chr7:55639054-55639073 None:intergenic 25.0%
!! CTTTTTGTTCTTTTTGATGA+GGG + Chr7:55639602-55639621 MsG0780038945.01.T01:three_prime_UTR 25.0%
!!! AACTTGGTATGCATTTTTTT+TGG + Chr7:55637695-55637714 MsG0780038945.01.T01:intron 25.0%
!!! AAGAAACAATAGGTCTTTTT+TGG + Chr7:55639445-55639464 MsG0780038945.01.T01:three_prime_UTR 25.0%
!!! ACTTGGTATGCATTTTTTTT+GGG + Chr7:55637696-55637715 MsG0780038945.01.T01:intron 25.0%
!!! GAGTATTTTTTTTTTGAAGG+GGG + Chr7:55639131-55639150 MsG0780038945.01.T01:intron 25.0%
!!! GTTTGTTAGGATTTTAATAG+AGG - Chr7:55637281-55637300 None:intergenic 25.0%
!!! TTTTAATTGTTTTGGATGTG+TGG + Chr7:55638738-55638757 MsG0780038945.01.T01:intron 25.0%
AAAGCTTGAAGACTATATAG+TGG + Chr7:55638902-55638921 MsG0780038945.01.T01:CDS 30.0%
AAGCTTGAAGACTATATAGT+GGG + Chr7:55638903-55638922 MsG0780038945.01.T01:CDS 30.0%
ACAAGCTACAATCACAAAAT+TGG - Chr7:55638838-55638857 None:intergenic 30.0%
CAAAAAACAGAGGAAATTGA+AGG - Chr7:55637344-55637363 None:intergenic 30.0%
CTATATAGTCTTCAAGCTTT+AGG - Chr7:55638902-55638921 None:intergenic 30.0%
GAAAAGAAAAAGGGATTATG+TGG - Chr7:55637259-55637278 None:intergenic 30.0%
GAAATTGAAGGGAAAGAAAA+GGG - Chr7:55637332-55637351 None:intergenic 30.0%
GTTGAATTTCTTGATTCAAC+AGG - Chr7:55638450-55638469 None:intergenic 30.0%
TTTCAGCAAAGACAAACAAA+TGG + Chr7:55638234-55638253 MsG0780038945.01.T01:CDS 30.0%
! AGTACCATTTTCAACATTAG+AGG - Chr7:55638967-55638986 None:intergenic 30.0%
! ATTGTTGTTATGATTCTCAG+AGG - Chr7:55637675-55637694 None:intergenic 30.0%
! TGATAATGAGAAAGTGATTG+TGG - Chr7:55638036-55638055 None:intergenic 30.0%
! TTAATGTACGTTTTTGCTAC+TGG + Chr7:55638715-55638734 MsG0780038945.01.T01:intron 30.0%
!! CCGTTTTTCGTTTATGATTT+AGG + Chr7:55638686-55638705 MsG0780038945.01.T01:intron 30.0%
!! TTTTGGAGGGTAAAGTAATA+GGG - Chr7:55637984-55638003 None:intergenic 30.0%
!! TTTTTGGAGGGTAAAGTAAT+AGG - Chr7:55637985-55638004 None:intergenic 30.0%
!!! ATGGTTTTTTGTTTAGCAAG+AGG + Chr7:55639513-55639532 MsG0780038945.01.T01:three_prime_UTR 30.0%
!!! CTTGGTATGCATTTTTTTTG+GGG + Chr7:55637697-55637716 MsG0780038945.01.T01:intron 30.0%
!!! GCTACTGGTTTTAATTGTTT+TGG + Chr7:55638730-55638749 MsG0780038945.01.T01:intron 30.0%
!!! GTTTTTATTGTCGTTTTGCA+GGG + Chr7:55637760-55637779 MsG0780038945.01.T01:intron 30.0%
!!! TCTTTTTTGGATGAAGATGT+AGG + Chr7:55639458-55639477 MsG0780038945.01.T01:three_prime_UTR 30.0%
!!! TGTACGTTTTTTTGCGTTTT+TGG + Chr7:55638543-55638562 MsG0780038945.01.T01:intron 30.0%
AAAAGGGAGAGAAAATGTGA+AGG - Chr7:55637316-55637335 None:intergenic 35.0%
AAAGGGAGAGAAAATGTGAA+GGG - Chr7:55637315-55637334 None:intergenic 35.0%
AAATAATGTTAGGAGCCTCT+TGG + Chr7:55639540-55639559 MsG0780038945.01.T01:three_prime_UTR 35.0%
AAGAAAAAGGGATTATGTGG+AGG - Chr7:55637256-55637275 None:intergenic 35.0%
AATCCATAAGGAAAAAGCAG+AGG - Chr7:55637518-55637537 None:intergenic 35.0%
AGAAAAAGGGATTATGTGGA+GGG - Chr7:55637255-55637274 None:intergenic 35.0%
AGCTTGAAGACTATATAGTG+GGG + Chr7:55638904-55638923 MsG0780038945.01.T01:CDS 35.0%
AGGGGATTTGATGTAACAAA+AGG + Chr7:55639407-55639426 MsG0780038945.01.T01:three_prime_UTR 35.0%
ATGCAACAGATTCAAAGTAG+AGG - Chr7:55637893-55637912 None:intergenic 35.0%
ATGGGAAAAAAGTAATCACC+TGG - Chr7:55638480-55638499 None:intergenic 35.0%
ATTACCGAAATGCGAAACAT+GGG - Chr7:55637225-55637244 None:intergenic 35.0%
CAAAAAAGCTCAAATCAGCA+GGG - Chr7:55638011-55638030 None:intergenic 35.0%
CAAAACGCAAAAACCCTAAA+AGG - Chr7:55637738-55637757 None:intergenic 35.0%
CAGAGAGAAACAAAAAACAG+AGG - Chr7:55637354-55637373 None:intergenic 35.0%
CATTCTCACAAACACCATTA+GGG - Chr7:55637861-55637880 None:intergenic 35.0%
CCTCTTGGATTAAAAATCTC+AGG + Chr7:55639555-55639574 MsG0780038945.01.T01:three_prime_UTR 35.0%
CTCTCAAGGAAAGACAAAAA+TGG + Chr7:55639637-55639656 MsG0780038945.01.T01:three_prime_UTR 35.0%
GGAAATTGAAGGGAAAGAAA+AGG - Chr7:55637333-55637352 None:intergenic 35.0%
TCAAGGAAAGACAAAAATGG+TGG + Chr7:55639640-55639659 MsG0780038945.01.T01:three_prime_UTR 35.0%
TCCACCTCTAATGTTGAAAA+TGG + Chr7:55638960-55638979 MsG0780038945.01.T01:CDS 35.0%
TTCATAGCAAGTAACTAAGG+TGG - Chr7:55639817-55639836 None:intergenic 35.0%
TTTCGCATTTCGGTAATCAT+GGG + Chr7:55637228-55637247 MsG0780038945.01.T01:five_prime_UTR 35.0%
TTTGGAGGGTAAAGTAATAG+GGG - Chr7:55637983-55638002 None:intergenic 35.0%
! ACCATTTTCAACATTAGAGG+TGG - Chr7:55638964-55638983 None:intergenic 35.0%
! ATTTTCCATGGCTGAGAATT+TGG + Chr7:55637379-55637398 MsG0780038945.01.T01:exon 35.0%
! CCTGAGATTTTTAATCCAAG+AGG - Chr7:55639558-55639577 None:intergenic 35.0%
! CTCTCTGTTTTCATTTTCCA+TGG + Chr7:55637367-55637386 MsG0780038945.01.T01:exon 35.0%
! GAGAAAATGTGAAGGGATTT+TGG - Chr7:55637308-55637327 None:intergenic 35.0%
! GTCATTTCCAAAAGCACATA+GGG - Chr7:55637803-55637822 None:intergenic 35.0%
! GTTTTCCTTGGAAATGGTTA+TGG + Chr7:55638390-55638409 MsG0780038945.01.T01:CDS 35.0%
! TGTCATTTCCAAAAGCACAT+AGG - Chr7:55637804-55637823 None:intergenic 35.0%
!! AGTCTTCAAGCTTTAGGTTA+AGG - Chr7:55638896-55638915 None:intergenic 35.0%
!! ATTCGCTTGGTAGCATTTTA+AGG + Chr7:55639366-55639385 MsG0780038945.01.T01:three_prime_UTR 35.0%
!! GGTAGCATTTTAAGGGATTT+GGG + Chr7:55639374-55639393 MsG0780038945.01.T01:three_prime_UTR 35.0%
!! GTAGCATTTTAAGGGATTTG+GGG + Chr7:55639375-55639394 MsG0780038945.01.T01:three_prime_UTR 35.0%
!! GTCTTCAAGCTTTAGGTTAA+GGG - Chr7:55638895-55638914 None:intergenic 35.0%
!! TAGCATTTTAAGGGATTTGG+GGG + Chr7:55639376-55639395 MsG0780038945.01.T01:three_prime_UTR 35.0%
!! TGGTAGCATTTTAAGGGATT+TGG + Chr7:55639373-55639392 MsG0780038945.01.T01:three_prime_UTR 35.0%
!! TTCGCTTGGTAGCATTTTAA+GGG + Chr7:55639367-55639386 MsG0780038945.01.T01:three_prime_UTR 35.0%
!!! AATGTGAAGGGATTTTGGTT+AGG - Chr7:55637303-55637322 None:intergenic 35.0%
!!! CGTTTTTATTGTCGTTTTGC+AGG + Chr7:55637759-55637778 MsG0780038945.01.T01:intron 35.0%
!!! GATTTTAGTTGCAGAGGATT+AGG + Chr7:55638145-55638164 MsG0780038945.01.T01:intron 35.0%
!!! GGATTTTGGTTAGGTTTGTT+AGG - Chr7:55637294-55637313 None:intergenic 35.0%
!!! GTTGATGATTTTAGTTGCAG+AGG + Chr7:55638139-55638158 MsG0780038945.01.T01:intron 35.0%
AACAACAACAACAACGTTGC+TGG + Chr7:55638282-55638301 MsG0780038945.01.T01:CDS 40.0%
AAGGAAAACAGCTCTCATGT+AGG - Chr7:55638379-55638398 None:intergenic 40.0%
AATGCTACCAAGCGAATCAA+AGG - Chr7:55639363-55639382 None:intergenic 40.0%
ACATTATTACCCCTATGCCT+TGG - Chr7:55639214-55639233 None:intergenic 40.0%
AGGAAAACAGCTCTCATGTA+GGG - Chr7:55638378-55638397 None:intergenic 40.0%
AGGAAAGACAAAAATGGTGG+TGG + Chr7:55639643-55639662 MsG0780038945.01.T01:three_prime_UTR 40.0%
AGGGTTGTGGAGTTTGAATT+TGG - Chr7:55638359-55638378 None:intergenic 40.0%
ATGGCTGAGAATTTGGATGA+CGG + Chr7:55637386-55637405 MsG0780038945.01.T01:CDS 40.0%
CAATGAAATCAAGCTTCCAC+AGG + Chr7:55639294-55639313 MsG0780038945.01.T01:CDS 40.0%
CAGCAAAGACAAACAAATGG+AGG + Chr7:55638237-55638256 MsG0780038945.01.T01:CDS 40.0%
CTGTAATACCACTGCAAATC+TGG - Chr7:55639771-55639790 None:intergenic 40.0%
GAAGCAGCAAGAGAATCAAT+TGG - Chr7:55637563-55637582 None:intergenic 40.0%
GATTACCGAAATGCGAAACA+TGG - Chr7:55637226-55637245 None:intergenic 40.0%
GCAAAAAAGCTCAAATCAGC+AGG - Chr7:55638012-55638031 None:intergenic 40.0%
GCATTCTCACAAACACCATT+AGG - Chr7:55637862-55637881 None:intergenic 40.0%
GGAGGAAGAAATGTTGTTGA+TGG + Chr7:55638255-55638274 MsG0780038945.01.T01:CDS 40.0%
GGCAACAACAAATTGCTGAT+AGG + Chr7:55638166-55638185 MsG0780038945.01.T01:CDS 40.0%
GGGGAAGAAGAATTTCTTTG+AGG - Chr7:55637964-55637983 None:intergenic 40.0%
GGTCATTAGAAAGTCTCTCA+AGG + Chr7:55639623-55639642 MsG0780038945.01.T01:three_prime_UTR 40.0%
GTTATGATTCTCAGAGGCTT+TGG - Chr7:55637669-55637688 None:intergenic 40.0%
GTTTCGCATTTCGGTAATCA+TGG + Chr7:55637227-55637246 MsG0780038945.01.T01:five_prime_UTR 40.0%
TAGGTTTGTCATCATCTGCA+TGG + Chr7:55638307-55638326 MsG0780038945.01.T01:CDS 40.0%
TCAGAACAAGCGAATCCATA+AGG - Chr7:55637530-55637549 None:intergenic 40.0%
TGATAGGCTGAACGCAATAA+GGG + Chr7:55638182-55638201 MsG0780038945.01.T01:CDS 40.0%
TGCTACCATAACCATTTCCA+AGG - Chr7:55638398-55638417 None:intergenic 40.0%
TGTTGAGCATGTTGTAGTGT+TGG - Chr7:55638333-55638352 None:intergenic 40.0%
TTGAAAAGCGAAAGCGAAGA+AGG - Chr7:55637482-55637501 None:intergenic 40.0%
TTTCTTGATTCAACAGGACG+AGG - Chr7:55638444-55638463 None:intergenic 40.0%
! AAACGATGCAAGTGTTGTTG+CGG - Chr7:55638936-55638955 None:intergenic 40.0%
! AAAGCACATAGGGTTGATTG+TGG - Chr7:55637793-55637812 None:intergenic 40.0%
! AAATGGTCCTTTGATTCGCT+TGG + Chr7:55639353-55639372 MsG0780038945.01.T01:three_prime_UTR 40.0%
! CAATCAACCCTATGTGCTTT+TGG + Chr7:55637793-55637812 MsG0780038945.01.T01:CDS 40.0%
! TTTGGAATCAACATGGAGAG+AGG - Chr7:55637651-55637670 None:intergenic 40.0%
!! AACAACAACGTTGCTGGTTT+AGG + Chr7:55638288-55638307 MsG0780038945.01.T01:CDS 40.0%
!! AAGACAAAAATGGTGGTGGA+TGG + Chr7:55639647-55639666 MsG0780038945.01.T01:three_prime_UTR 40.0%
!! AGACAAAAATGGTGGTGGAT+GGG + Chr7:55639648-55639667 MsG0780038945.01.T01:three_prime_UTR 40.0%
!! AGAGCTGTTTTCCTTGGAAA+TGG + Chr7:55638384-55638403 MsG0780038945.01.T01:CDS 40.0%
!! CAAATCAGCAGGGTTGTTTT+TGG - Chr7:55638001-55638020 None:intergenic 40.0%
!! TACATGAGAGCTGTTTTCCT+TGG + Chr7:55638378-55638397 MsG0780038945.01.T01:CDS 40.0%
!! TCGCTTTCGCTTTTCAACAA+TGG + Chr7:55637485-55637504 MsG0780038945.01.T01:CDS 40.0%
!!! ATTGTTTTGGATGTGTGGAC+CGG + Chr7:55638743-55638762 MsG0780038945.01.T01:intron 40.0%
!!! GATCCTCTGCTTTTTCCTTA+TGG + Chr7:55637512-55637531 MsG0780038945.01.T01:CDS 40.0%
!!! GATTTGGGGGAGTATTTTAG+GGG + Chr7:55639389-55639408 MsG0780038945.01.T01:three_prime_UTR 40.0%
!!! GGATTTGGGGGAGTATTTTA+GGG + Chr7:55639388-55639407 MsG0780038945.01.T01:three_prime_UTR 40.0%
!!! TTTATTGTCGTTTTGCAGGG+AGG + Chr7:55637763-55637782 MsG0780038945.01.T01:intron 40.0%
AAACACCATTAGGGCTACCT+TGG - Chr7:55637852-55637871 None:intergenic 45.0%
AAATCAAGCTTCCACAGGAG+TGG + Chr7:55639299-55639318 MsG0780038945.01.T01:CDS 45.0%
AAATGACAGCAAATGCCGCA+AGG + Chr7:55637816-55637835 MsG0780038945.01.T01:CDS 45.0%
AATGACAGCAAATGCCGCAA+GGG + Chr7:55637817-55637836 MsG0780038945.01.T01:CDS 45.0%
AATGGTTATGGTAGCAGCAC+TGG + Chr7:55638402-55638421 MsG0780038945.01.T01:CDS 45.0%
AGCAAGTAACTAAGGTGGAC+AGG - Chr7:55639812-55639831 None:intergenic 45.0%
AGCGAAAGCGAAGAAGGTTT+CGG - Chr7:55637476-55637495 None:intergenic 45.0%
AGTAACTAAGGTGGACAGGT+TGG - Chr7:55639808-55639827 None:intergenic 45.0%
ATAGGCTGAACGCAATAAGG+GGG + Chr7:55638184-55638203 MsG0780038945.01.T01:CDS 45.0%
ATTTCATTGCTCACTGCTGC+TGG - Chr7:55639283-55639302 None:intergenic 45.0%
CTCTCCCATGTTTCGCATTT+CGG + Chr7:55637218-55637237 MsG0780038945.01.T01:five_prime_UTR 45.0%
CTGATAGGCTGAACGCAATA+AGG + Chr7:55638181-55638200 MsG0780038945.01.T01:CDS 45.0%
GATAGGCTGAACGCAATAAG+GGG + Chr7:55638183-55638202 MsG0780038945.01.T01:CDS 45.0%
GGGGTATGCAGAAGCAAAAT+GGG + Chr7:55638205-55638224 MsG0780038945.01.T01:CDS 45.0%
GGGTATGCAGAAGCAAAATG+GGG + Chr7:55638206-55638225 MsG0780038945.01.T01:CDS 45.0%
GGTATGCAGAAGCAAAATGG+GGG + Chr7:55638207-55638226 MsG0780038945.01.T01:CDS 45.0%
GTCATCCAAATTCTCAGCCA+TGG - Chr7:55637387-55637406 None:intergenic 45.0%
TTATTACCCCTATGCCTTGG+AGG - Chr7:55639211-55639230 None:intergenic 45.0%
! ATTTGGATGACGGTGAGTTC+TGG + Chr7:55637396-55637415 MsG0780038945.01.T01:CDS 45.0%
! CGAAGAAGGTTTCGGTTTTG+TGG - Chr7:55637468-55637487 None:intergenic 45.0%
! TGTAGCTTGTGCAACTGCAT+TGG + Chr7:55638848-55638867 MsG0780038945.01.T01:intron 45.0%
!! AGAAGGTTTCGGTTTTGTGG+TGG - Chr7:55637465-55637484 None:intergenic 45.0%
!! CAGAGGCTTTGGAATCAACA+TGG - Chr7:55637658-55637677 None:intergenic 45.0%
!!! ATCAGCAGGGTTGTTTTTGG+AGG - Chr7:55637998-55638017 None:intergenic 45.0%
!!! GGGATTTGGGGGAGTATTTT+AGG + Chr7:55639387-55639406 MsG0780038945.01.T01:three_prime_UTR 45.0%
!!! TCAGCAGGGTTGTTTTTGGA+GGG - Chr7:55637997-55638016 None:intergenic 45.0%
ACAGCTCTCATGTAGGGTTG+TGG - Chr7:55638372-55638391 None:intergenic 50.0%
TAGGCTGAACGCAATAAGGG+GGG + Chr7:55638185-55638204 MsG0780038945.01.T01:CDS 50.0%
TCAAGCCAAGGTAGCCCTAA+TGG + Chr7:55637844-55637863 MsG0780038945.01.T01:CDS 50.0%
TGTTGCACCTCCAAGGCATA+GGG + Chr7:55639201-55639220 MsG0780038945.01.T01:CDS 50.0%
! CTTGGCTTGAAGAACCCTTG+CGG - Chr7:55637834-55637853 None:intergenic 50.0%
! GGACAGGTTGGCATCAAAGA+AGG - Chr7:55639796-55639815 None:intergenic 50.0%
! GGCTTTGACCAGATTTGCAG+TGG + Chr7:55639760-55639779 MsG0780038945.01.T01:three_prime_UTR 50.0%
! GGGGGTATGCAGAAGCAAAA+TGG + Chr7:55638204-55638223 MsG0780038945.01.T01:CDS 50.0%
!! TGCATTGGTTCCAGCTAGAG+TGG + Chr7:55638863-55638882 MsG0780038945.01.T01:CDS 50.0%
AGGCTGAACGCAATAAGGGG+GGG + Chr7:55638186-55638205 MsG0780038945.01.T01:CDS 55.0%
CAGTTTCTCTCCGACGACGA+CGG + Chr7:55637428-55637447 MsG0780038945.01.T01:CDS 55.0%
CATCAGTACGTCCACTCCTG+TGG - Chr7:55639313-55639332 None:intergenic 55.0%
CGCAAGGGTTCTTCAAGCCA+AGG + Chr7:55637832-55637851 MsG0780038945.01.T01:CDS 55.0%
CTGTTGCACCTCCAAGGCAT+AGG + Chr7:55639200-55639219 MsG0780038945.01.T01:CDS 55.0%
GCAGCAGCAACAATACCAGC+AGG + Chr7:55639251-55639270 MsG0780038945.01.T01:CDS 55.0%
GTTGCACCTCCAAGGCATAG+GGG + Chr7:55639202-55639221 MsG0780038945.01.T01:CDS 55.0%
TAGCTGCTGTTGCACCTCCA+AGG + Chr7:55639194-55639213 MsG0780038945.01.T01:CDS 55.0%
TCGTCGTCGGAGAGAAACTG+CGG - Chr7:55637428-55637447 None:intergenic 55.0%
! GATGCAAGTGTTGTTGCGGC+TGG - Chr7:55638932-55638951 None:intergenic 55.0%
!! TATGGTAGCAGCACTGGCAC+TGG + Chr7:55638408-55638427 MsG0780038945.01.T01:CDS 55.0%
TCGTCGGAGAGAAACTGCGG+CGG - Chr7:55637425-55637444 None:intergenic 60.0%
TGTGTCGTCACCGTCGTCGT+CGG - Chr7:55637441-55637460 None:intergenic 60.0%
! TTGCTCACTGCTGCTGGCTG+AGG - Chr7:55639277-55639296 None:intergenic 60.0%
AGGGCATGCGCCACTCTAGC+TGG - Chr7:55638876-55638895 None:intergenic 65.0%
! TGCTGCTGGCTGAGGCCTGC+TGG - Chr7:55639269-55639288 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 55637168 55639859 55637168 ID=MsG0780038945.01;Name=MsG0780038945.01
Chr7 mRNA 55637168 55639859 55637168 ID=MsG0780038945.01.T01;Parent=MsG0780038945.01;Name=MsG0780038945.01.T01;_AED=0.19;_eAED=0.19;_QI=218|1|1|1|1|1|5|529|399
Chr7 exon 55637168 55637700 55637168 ID=MsG0780038945.01.T01:exon:7773;Parent=MsG0780038945.01.T01
Chr7 exon 55637781 55638071 55637781 ID=MsG0780038945.01.T01:exon:7774;Parent=MsG0780038945.01.T01
Chr7 exon 55638153 55638480 55638153 ID=MsG0780038945.01.T01:exon:7775;Parent=MsG0780038945.01.T01
Chr7 exon 55638853 55638981 55638853 ID=MsG0780038945.01.T01:exon:7776;Parent=MsG0780038945.01.T01
Chr7 exon 55639194 55639859 55639194 ID=MsG0780038945.01.T01:exon:7777;Parent=MsG0780038945.01.T01
Chr7 five_prime_UTR 55637168 55637385 55637168 ID=MsG0780038945.01.T01:five_prime_utr;Parent=MsG0780038945.01.T01
Chr7 CDS 55637386 55637700 55637386 ID=MsG0780038945.01.T01:cds;Parent=MsG0780038945.01.T01
Chr7 CDS 55637781 55638071 55637781 ID=MsG0780038945.01.T01:cds;Parent=MsG0780038945.01.T01
Chr7 CDS 55638153 55638480 55638153 ID=MsG0780038945.01.T01:cds;Parent=MsG0780038945.01.T01
Chr7 CDS 55638853 55638981 55638853 ID=MsG0780038945.01.T01:cds;Parent=MsG0780038945.01.T01
Chr7 CDS 55639194 55639330 55639194 ID=MsG0780038945.01.T01:cds;Parent=MsG0780038945.01.T01
Chr7 three_prime_UTR 55639331 55639859 55639331 ID=MsG0780038945.01.T01:three_prime_utr;Parent=MsG0780038945.01.T01
Gene Sequence

>MsG0780038945.01.T01

ATGGCTGAGAATTTGGATGACGGTGAGTTCTGGCTTCCGCCGCAGTTTCTCTCCGACGACGACGGTGACGACACAACCACCACAAAACCGAAACCTTCTTCGCTTTCGCTTTTCAACAATGGTGAAGATCCTCTGCTTTTTCCTTATGGATTCGCTTGTTCTGATCTCAGTTCACCAATTGATTCTCTTGCTGCTTCAAGCGAAACTGAAAGCGATGATGATGAACAACTCTTCGCTGAGTTAACTCGTTGCTTGTCTCGTTCCTCTCTCCATGTTGATTCCAAAGCCTCTGAGAATCATAACAACAATAACTTGGGAGGTTCACCACAATCAACCCTATGTGCTTTTGGAAATGACAGCAAATGCCGCAAGGGTTCTTCAAGCCAAGGTAGCCCTAATGGTGTTTGTGAGAATGCTTCTTCAACCTCTACTTTGAATCTGTTGCATGCTGCTGCTGATGAAGTTGAAACTTTGAGATTGAATCAACAAACTGTTCCTCAAAGAAATTCTTCTTCCCCTATTACTTTACCCTCCAAAAACAACCCTGCTGATTTGAGCTTTTTTGCTCCACAATCACTTTCTCATTATCAATTGCAAATTGCTAATTTGCAGAGGATTAGGCAACAACAAATTGCTGATAGGCTGAACGCAATAAGGGGGGGTATGCAGAAGCAAAATGGGGGTGCATTTCAGCAAAGACAAACAAATGGAGGAAGAAATGTTGTTGATGGAAGAAACAACAACAACAACGTTGCTGGTTTAGGTTTGTCATCATCTGCATGGCCAACACTACAACATGCTCAACAAAACCAAATTCAAACTCCACAACCCTACATGAGAGCTGTTTTCCTTGGAAATGGTTATGGTAGCAGCACTGGCACTGGTGTGTTCTTGCCTCGTCCTGTTGAATCAAGAAATTCAACAAAAAAACCAGCTTGTGCAACTGCATTGGTTCCAGCTAGAGTGGCGCATGCCCTTAACCTAAAGCTTGAAGACTATATAGTGGGGTGCCAGCCGCAACAACACTTGCATCGTTTTAATTCCACCTCTAATGTTGAAAATGTAGCTGCTGTTGCACCTCCAAGGCATAGGGGTAATAATGTCAATTCACAAAAGAAGCGCAGCAGCAACAATACCAGCAGGCCTCAGCCAGCAGCAGTGAGCAATGAAATCAAGCTTCCACAGGAGTGGACGTACTGA

Protein sequence

>MsG0780038945.01.T01

MAENLDDGEFWLPPQFLSDDDGDDTTTTKPKPSSLSLFNNGEDPLLFPYGFACSDLSSPIDSLAASSETESDDDEQLFAELTRCLSRSSLHVDSKASENHNNNNLGGSPQSTLCAFGNDSKCRKGSSSQGSPNGVCENASSTSTLNLLHAAADEVETLRLNQQTVPQRNSSSPITLPSKNNPADLSFFAPQSLSHYQLQIANLQRIRQQQIADRLNAIRGGMQKQNGGAFQQRQTNGGRNVVDGRNNNNNVAGLGLSSSAWPTLQHAQQNQIQTPQPYMRAVFLGNGYGSSTGTGVFLPRPVESRNSTKKPACATALVPARVAHALNLKLEDYIVGCQPQQHLHRFNSTSNVENVAAVAPPRHRGNNVNSQKKRSSNNTSRPQPAAVSNEIKLPQEWTY*