Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046599.01.T01 | KEH42825.1 | 80.892 | 157 | 8 | 2 | 1 | 135 | 1 | 157 | 1.05E-81 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046599.01.T01 | O80775 | 55.769 | 156 | 44 | 2 | 1 | 134 | 1 | 153 | 4.57E-48 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046599.01.T01 | A0A072VXM4 | 80.892 | 157 | 8 | 2 | 1 | 135 | 1 | 157 | 5.03e-82 | 247 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000114.01 | MsG0880046599.01 | -0.812783 | 3.563800e-51 | 2.286462e-48 |
| MsG0180000814.01 | MsG0880046599.01 | -0.819303 | 1.246685e-52 | 9.556838e-50 |
| MsG0180001100.01 | MsG0880046599.01 | -0.805281 | 1.439663e-49 | 7.585675e-47 |
| MsG0880045765.01 | MsG0880046599.01 | -0.809316 | 2.009490e-50 | 1.176002e-47 |
| MsG0880046599.01 | MsG0880046963.01 | 0.815367 | 9.584994e-52 | 6.595600e-49 |
| MsG0880046599.01 | MsG0880047055.01 | 0.826170 | 3.142523e-54 | 2.924672e-51 |
| MsG0880046599.01 | MsG0880047267.01 | -0.812809 | 3.516175e-51 | 2.257417e-48 |
| MsG0880046599.01 | MsG0880047696.01 | -0.803192 | 3.920147e-49 | 1.957574e-46 |
| MsG0180003189.01 | MsG0880046599.01 | -0.807267 | 5.493452e-50 | 3.046303e-47 |
| MsG0180003246.01 | MsG0880046599.01 | 0.810133 | 1.341125e-50 | 8.019586e-48 |
| MsG0180003357.01 | MsG0880046599.01 | -0.819554 | 1.092853e-52 | 8.437026e-50 |
| MsG0180006104.01 | MsG0880046599.01 | -0.815947 | 7.120727e-52 | 4.978082e-49 |
| MsG0280006306.01 | MsG0880046599.01 | 0.823816 | 1.129914e-53 | 9.834199e-51 |
| MsG0280006418.01 | MsG0880046599.01 | 0.816830 | 4.518125e-52 | 3.235893e-49 |
| MsG0780040375.01 | MsG0880046599.01 | 0.809852 | 1.541317e-50 | 9.149472e-48 |
| MsG0780041187.01 | MsG0880046599.01 | -0.852271 | 5.151360e-61 | 1.070753e-57 |
| MsG0780041387.01 | MsG0880046599.01 | -0.804202 | 2.418696e-49 | 1.239511e-46 |
| MsG0780041729.01 | MsG0880046599.01 | 0.835161 | 1.971244e-56 | 2.390544e-53 |
| MsG0880042276.01 | MsG0880046599.01 | -0.824700 | 7.003659e-54 | 6.251246e-51 |
| MsG0280010916.01 | MsG0880046599.01 | -0.811317 | 7.437560e-51 | 4.588988e-48 |
| MsG0280011073.01 | MsG0880046599.01 | -0.822253 | 2.615285e-53 | 2.177442e-50 |
| MsG0280011272.01 | MsG0880046599.01 | 0.834661 | 2.634403e-56 | 3.146947e-53 |
| MsG0380012005.01 | MsG0880046599.01 | -0.802418 | 5.664777e-49 | 2.773568e-46 |
| MsG0380013295.01 | MsG0880046599.01 | 0.803615 | 3.202893e-49 | 1.616881e-46 |
| MsG0380014225.01 | MsG0880046599.01 | 0.825957 | 3.530822e-54 | 3.266315e-51 |
| MsG0380014727.01 | MsG0880046599.01 | -0.828190 | 1.031798e-54 | 1.018207e-51 |
| MsG0380014866.01 | MsG0880046599.01 | -0.833248 | 5.947783e-56 | 6.810862e-53 |
| MsG0680031377.01 | MsG0880046599.01 | 0.807506 | 4.889791e-50 | 2.728442e-47 |
| MsG0680032460.01 | MsG0880046599.01 | 0.831859 | 1.314683e-55 | 1.444744e-52 |
| MsG0680032516.01 | MsG0880046599.01 | -0.800579 | 1.349023e-48 | 6.303984e-46 |
| MsG0680033465.01 | MsG0880046599.01 | -0.819994 | 8.671664e-53 | 6.777642e-50 |
| MsG0480018911.01 | MsG0880046599.01 | -0.819890 | 9.158709e-53 | 7.137452e-50 |
| MsG0480020024.01 | MsG0880046599.01 | -0.830104 | 3.542664e-55 | 3.696570e-52 |
| MsG0480020935.01 | MsG0880046599.01 | 0.833012 | 6.807351e-56 | 7.740675e-53 |
| MsG0480023261.01 | MsG0880046599.01 | -0.803521 | 3.350679e-49 | 1.687450e-46 |
| MsG0480023381.01 | MsG0880046599.01 | -0.809761 | 1.612621e-50 | 9.550393e-48 |
| MsG0580024790.01 | MsG0880046599.01 | 0.835738 | 1.409034e-56 | 1.738643e-53 |
| MsG0580024829.01 | MsG0880046599.01 | -0.816622 | 5.029205e-52 | 3.581604e-49 |
| MsG0580024930.01 | MsG0880046599.01 | 0.801829 | 7.484053e-49 | 3.609744e-46 |
| MsG0580025369.01 | MsG0880046599.01 | 0.808127 | 3.608232e-50 | 2.046281e-47 |
| MsG0380015745.01 | MsG0880046599.01 | -0.804102 | 2.538330e-49 | 1.297516e-46 |
| MsG0380015847.01 | MsG0880046599.01 | 0.803433 | 3.494681e-49 | 1.755908e-46 |
| MsG0380016191.01 | MsG0880046599.01 | 0.804918 | 1.715395e-49 | 8.955514e-47 |
| MsG0380016347.01 | MsG0880046599.01 | 0.836101 | 1.140086e-56 | 1.422310e-53 |
| MsG0380016740.01 | MsG0880046599.01 | -0.836198 | 1.077226e-56 | 1.348027e-53 |
| MsG0380017085.01 | MsG0880046599.01 | -0.803068 | 4.159284e-49 | 2.070205e-46 |
| MsG0380017202.01 | MsG0880046599.01 | -0.818191 | 2.229434e-52 | 1.657457e-49 |
| MsG0380017293.01 | MsG0880046599.01 | -0.837544 | 4.882921e-57 | 6.363376e-54 |
| MsG0380017322.01 | MsG0880046599.01 | -0.809901 | 1.504448e-50 | 8.942070e-48 |
| MsG0380017931.01 | MsG0880046599.01 | -0.820437 | 6.861506e-53 | 5.429159e-50 |
| MsG0580029514.01 | MsG0880046599.01 | 0.801283 | 9.687212e-49 | 4.608238e-46 |
| MsG0580029879.01 | MsG0880046599.01 | -0.809253 | 2.073488e-50 | 1.211428e-47 |
| MsG0580029999.01 | MsG0880046599.01 | 0.822507 | 2.282637e-53 | 1.914386e-50 |
| MsG0680030566.01 | MsG0880046599.01 | 0.802583 | 5.237857e-49 | 2.575183e-46 |
| MsG0280006634.01 | MsG0880046599.01 | -0.831805 | 1.355770e-55 | 1.487506e-52 |
| MsG0280006669.01 | MsG0880046599.01 | -0.834016 | 3.823720e-56 | 4.480447e-53 |
| MsG0280006753.01 | MsG0880046599.01 | 0.800468 | 1.421057e-48 | 6.621645e-46 |
| MsG0280007118.01 | MsG0880046599.01 | -0.824095 | 9.715503e-54 | 8.521715e-51 |
| MsG0280007165.01 | MsG0880046599.01 | 0.833076 | 6.565189e-56 | 7.479887e-53 |
| MsG0280007575.01 | MsG0880046599.01 | -0.819944 | 8.900767e-53 | 6.946884e-50 |
| MsG0280007756.01 | MsG0880046599.01 | -0.801187 | 1.013695e-48 | 4.810462e-46 |
| MsG0280008112.01 | MsG0880046599.01 | -0.823546 | 1.306629e-53 | 1.128450e-50 |
| MsG0280008928.01 | MsG0880046599.01 | -0.823627 | 1.251095e-53 | 1.083053e-50 |
| MsG0280008929.01 | MsG0880046599.01 | -0.803622 | 3.193273e-49 | 1.612277e-46 |
| MsG0280009256.01 | MsG0880046599.01 | -0.813214 | 2.866823e-51 | 1.860661e-48 |
| MsG0280009350.01 | MsG0880046599.01 | -0.806765 | 7.016079e-50 | 3.840128e-47 |
| MsG0280010216.01 | MsG0880046599.01 | -0.808604 | 2.854357e-50 | 1.639076e-47 |
| MsG0280010288.01 | MsG0880046599.01 | -0.800588 | 1.343461e-48 | 6.279328e-46 |
| MsG0680035707.01 | MsG0880046599.01 | -0.819185 | 1.326375e-52 | 1.013499e-49 |
| MsG0780036803.01 | MsG0880046599.01 | -0.805867 | 1.085162e-49 | 5.804846e-47 |
| MsG0780037330.01 | MsG0880046599.01 | -0.813281 | 2.770748e-51 | 1.801673e-48 |
| MsG0780037701.01 | MsG0880046599.01 | -0.817850 | 2.662805e-52 | 1.961244e-49 |
| MsG0780039867.01 | MsG0880046599.01 | 0.829129 | 6.116212e-55 | 6.203378e-52 |
| MsG0780039964.01 | MsG0880046599.01 | -0.802069 | 6.682685e-49 | 3.242902e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046599.01.T01 | MTR_1g076780 | 80.892 | 157 | 8 | 2 | 1 | 135 | 1 | 157 | 1.27e-85 | 247 |
| MsG0880046599.01.T01 | MTR_4g111810 | 80.769 | 156 | 8 | 2 | 1 | 134 | 62 | 217 | 1.89e-81 | 245 |
| MsG0880046599.01.T01 | MTR_4g111810 | 80.769 | 156 | 8 | 2 | 1 | 134 | 62 | 217 | 2.14e-81 | 244 |
| MsG0880046599.01.T01 | MTR_4g077783 | 79.487 | 156 | 10 | 2 | 1 | 134 | 1 | 156 | 2.16e-79 | 243 |
| MsG0880046599.01.T01 | MTR_4g077783 | 75.000 | 124 | 9 | 2 | 33 | 134 | 11 | 134 | 7.12e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046599.01.T01 | AT2G34260 | 55.769 | 156 | 44 | 2 | 1 | 134 | 1 | 153 | 4.66e-49 | 160 |
| MsG0880046599.01.T01 | AT2G34260 | 70.690 | 58 | 17 | 0 | 77 | 134 | 39 | 96 | 6.39e-24 | 94.0 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAAATGGAAATCAATT+TGG | 0.133063 | 8:+75330193 | MsG0880046599.01.T01:intron |
| GCAGAAATGGAAATCAATTT+GGG | 0.263158 | 8:+75330194 | MsG0880046599.01.T01:intron |
| AGACGATGATGGTTGTATTA+AGG | 0.363138 | 8:+75331044 | MsG0880046599.01.T01:CDS |
| ACTGAGTCAACCGTTGCTTC+AGG | 0.370784 | 8:+75331021 | MsG0880046599.01.T01:CDS |
| GTAATGCACTTTATAGCTCT+TGG | 0.429900 | 8:+75330674 | MsG0880046599.01.T01:CDS |
| TCTGAAAATCTCGTTGCTAC+AGG | 0.460466 | 8:+75330248 | MsG0880046599.01.T01:CDS |
| ATCTGATGCAATGAAACTAT+TGG | 0.465061 | 8:+75331355 | MsG0880046599.01.T01:CDS |
| GTTTGGAATTTATACCTCAC+TGG | 0.467283 | 8:-75330444 | None:intergenic |
| ACCGCGGCCGGAGGTTTCTC+TGG | 0.469948 | 8:-75329596 | None:intergenic |
| CAAGTTTATCAATCTATTGA+CGG | 0.472270 | 8:-75330998 | None:intergenic |
| GGAGAGAGCACGACCGCGGC+CGG | 0.472362 | 8:-75329608 | None:intergenic |
| GTTGCTACAGGACTCATAGA+TGG | 0.479575 | 8:+75330260 | MsG0880046599.01.T01:CDS |
| CGATTCATCAACGGCGGACG+TGG | 0.494681 | 8:+75330652 | MsG0880046599.01.T01:CDS |
| GAACAGTGAATGACGGATGC+CGG | 0.505077 | 8:-75329629 | None:intergenic |
| TTGTCTAAATTCCAGGGTGT+TGG | 0.508482 | 8:+75330594 | MsG0880046599.01.T01:intron |
| ATTGCAACAAGAACGTTCTC+TGG | 0.509789 | 8:-75331288 | None:intergenic |
| GGCCGCGGTCGTGCTCTCTC+CGG | 0.511528 | 8:+75329610 | MsG0880046599.01.T01:five_prime_UTR |
| ACCAGAGAAACCTCCGGCCG+CGG | 0.515993 | 8:+75329595 | MsG0880046599.01.T01:five_prime_UTR |
| AGCTCTGCAAGACTCGGTGT+GGG | 0.536682 | 8:-75330626 | None:intergenic |
| CAATTCATTTGAAGCTCACG+AGG | 0.541421 | 8:+75331307 | MsG0880046599.01.T01:CDS |
| TTTGGAATTTATACCTCACT+GGG | 0.545001 | 8:-75330443 | None:intergenic |
| GTTGCTTCAGGAGACGATGA+TGG | 0.547346 | 8:+75331033 | MsG0880046599.01.T01:CDS |
| GAAACTATTGGCCACAAGGT+AGG | 0.557387 | 8:+75331367 | MsG0880046599.01.T01:CDS |
| CAATGAAACTATTGGCCACA+AGG | 0.574094 | 8:+75331363 | MsG0880046599.01.T01:CDS |
| TCGAGCAGCTCTGCAAGACT+CGG | 0.577288 | 8:-75330632 | None:intergenic |
| CAGAAATGGAAATCAATTTG+GGG | 0.582337 | 8:+75330195 | MsG0880046599.01.T01:intron |
| CAGCTCTGCAAGACTCGGTG+TGG | 0.588714 | 8:-75330627 | None:intergenic |
| GGAAAACAACTTACAAGTGA+AGG | 0.595999 | 8:-75330286 | None:intergenic |
| TGCCGGAGAGAGCACGACCG+CGG | 0.606529 | 8:-75329612 | None:intergenic |
| ATCATCGTCTCCTGAAGCAA+CGG | 0.608910 | 8:-75331031 | None:intergenic |
| CTGCAGGTATCGTTATAGCT+CGG | 0.619506 | 8:+75330404 | MsG0880046599.01.T01:intron |
| GAGAGCACGACCGCGGCCGG+AGG | 0.621011 | 8:-75329605 | None:intergenic |
| CTTCATACCAGAGAAACCTC+CGG | 0.628039 | 8:+75329589 | MsG0880046599.01.T01:five_prime_UTR |
| TTACTGAATTGCCTACCTTG+TGG | 0.637396 | 8:-75331378 | None:intergenic |
| CTGACCAATGAGAAAAGAAG+CGG | 0.642004 | 8:-75329653 | None:intergenic |
| AAGCGGAGAACAGTGAATGA+CGG | 0.648242 | 8:-75329636 | None:intergenic |
| GTTTCTCTGGTATGAAGACG+CGG | 0.675552 | 8:-75329583 | None:intergenic |
| AGAGCTGCTCGATTCATCAA+CGG | 0.684223 | 8:+75330643 | MsG0880046599.01.T01:CDS |
| GCTGCTCGATTCATCAACGG+CGG | 0.723347 | 8:+75330646 | MsG0880046599.01.T01:CDS |
| ACACTAATAGCGACCCAGTG+AGG | 0.724106 | 8:+75330430 | MsG0880046599.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTGTTTTTATTTTATTTA+GGG | + | Chr8:75330972-75330991 | MsG0880046599.01.T01:intron | 10.0% |
| !!! | TTCTTTTCTTTAATATTTAA+TGG | + | Chr8:75330467-75330486 | MsG0880046599.01.T01:intron | 10.0% |
| !!! | TTTCTGTTTTTATTTTATTT+AGG | + | Chr8:75330971-75330990 | MsG0880046599.01.T01:intron | 10.0% |
| !! | AATATTAAAGAAAAGAAGTT+TGG | - | Chr8:75330464-75330483 | None:intergenic | 15.0% |
| !! | ATAAAAAATTATTGCAATGT+TGG | - | Chr8:75330574-75330593 | None:intergenic | 15.0% |
| !! | TAAAAAATTATTGCAATGTT+GGG | - | Chr8:75330573-75330592 | None:intergenic | 15.0% |
| !! | TAATTATTTAAGCAAAATCA+TGG | - | Chr8:75330928-75330947 | None:intergenic | 15.0% |
| !!! | AATTTTGTATTTAAACTCAA+TGG | - | Chr8:75329777-75329796 | None:intergenic | 15.0% |
| !! | AAATTTGTGTTTATCTAAAC+AGG | - | Chr8:75329866-75329885 | None:intergenic | 20.0% |
| !! | AATTTGTGTTTATCTAAACA+GGG | - | Chr8:75329865-75329884 | None:intergenic | 20.0% |
| !! | AGAAAAAAAACTGAAATTGA+AGG | - | Chr8:75329690-75329709 | None:intergenic | 20.0% |
| !! | TATTTGAATGCATATAGTTT+AGG | + | Chr8:75330120-75330139 | MsG0880046599.01.T01:intron | 20.0% |
| !!! | ACTTTTAGACAATAACTTAA+TGG | + | Chr8:75331169-75331188 | MsG0880046599.01.T01:intron | 20.0% |
| !!! | ATAATAACAATGTTGCTTTA+TGG | - | Chr8:75330327-75330346 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTCTAAATTCCA+GGG | + | Chr8:75330588-75330607 | MsG0880046599.01.T01:intron | 20.0% |
| !!! | TTTTTATTTGTCTAAATTCC+AGG | + | Chr8:75330587-75330606 | MsG0880046599.01.T01:intron | 20.0% |
| ! | ACATAATTATGAAAGAGTTC+AGG | + | Chr8:75331217-75331236 | MsG0880046599.01.T01:intron | 25.0% |
| ! | CAAGTTTATCAATCTATTGA+CGG | - | Chr8:75331001-75331020 | None:intergenic | 25.0% |
| ! | GAACTCTTTCATAATTATGT+GGG | - | Chr8:75331217-75331236 | None:intergenic | 25.0% |
| ! | TATAAAACAAAATGAAGACG+AGG | - | Chr8:75330701-75330720 | None:intergenic | 25.0% |
| ! | TGAACTCTTTCATAATTATG+TGG | - | Chr8:75331218-75331237 | None:intergenic | 25.0% |
| ATCTGATGCAATGAAACTAT+TGG | + | Chr8:75331355-75331374 | MsG0880046599.01.T01:CDS | 30.0% | |
| CAGAAATGGAAATCAATTTG+GGG | + | Chr8:75330195-75330214 | MsG0880046599.01.T01:intron | 30.0% | |
| GCAGAAATGGAAATCAATTT+GGG | + | Chr8:75330194-75330213 | MsG0880046599.01.T01:intron | 30.0% | |
| TAAGCAAAATCATGGCAAAT+GGG | - | Chr8:75330920-75330939 | None:intergenic | 30.0% | |
| TGCAGAAATGGAAATCAATT+TGG | + | Chr8:75330193-75330212 | MsG0880046599.01.T01:intron | 30.0% | |
| TTAAGCAAAATCATGGCAAA+TGG | - | Chr8:75330921-75330940 | None:intergenic | 30.0% | |
| TTATTGCAATGTTGGGTTAA+AGG | - | Chr8:75330566-75330585 | None:intergenic | 30.0% | |
| TTTCATAATTATGTGGGTAG+AGG | - | Chr8:75331211-75331230 | None:intergenic | 30.0% | |
| ! | CTGTTATTGATGATTTCATC+TGG | + | Chr8:75330740-75330759 | MsG0880046599.01.T01:intron | 30.0% |
| ! | CTTCAAGTTCAATAATTGAG+TGG | + | Chr8:75329717-75329736 | MsG0880046599.01.T01:intron | 30.0% |
| ! | TATTGATGATTTCATCTGGA+TGG | + | Chr8:75330744-75330763 | MsG0880046599.01.T01:intron | 30.0% |
| ! | TTTGGAATTTATACCTCACT+GGG | - | Chr8:75330446-75330465 | None:intergenic | 30.0% |
| !! | AAACGTGAAAGTGTCAAATT+GGG | + | Chr8:75329994-75330013 | MsG0880046599.01.T01:intron | 30.0% |
| !! | TAAACGTGAAAGTGTCAAAT+TGG | + | Chr8:75329993-75330012 | MsG0880046599.01.T01:intron | 30.0% |
| !! | TATTTTCGAGGGTTTAGTTA+GGG | + | Chr8:75330034-75330053 | MsG0880046599.01.T01:intron | 30.0% |
| !! | TTATTTTCGAGGGTTTAGTT+AGG | + | Chr8:75330033-75330052 | MsG0880046599.01.T01:intron | 30.0% |
| !! | TTGTAATGTCTGTGTTTTAG+CGG | + | Chr8:75330787-75330806 | MsG0880046599.01.T01:intron | 30.0% |
| !! | TTTCATTTGGTGTTAGGTTT+GGG | + | Chr8:75331262-75331281 | MsG0880046599.01.T01:intron | 30.0% |
| !!! | TTTTCATTTGGTGTTAGGTT+TGG | + | Chr8:75331261-75331280 | MsG0880046599.01.T01:intron | 30.0% |
| AAGCAAATCTACTCACTCAT+GGG | - | Chr8:75330891-75330910 | None:intergenic | 35.0% | |
| CATTTCTGCAAACAACACAT+GGG | - | Chr8:75330183-75330202 | None:intergenic | 35.0% | |
| GGAAAACAACTTACAAGTGA+AGG | - | Chr8:75330289-75330308 | None:intergenic | 35.0% | |
| GTAATGCACTTTATAGCTCT+TGG | + | Chr8:75330674-75330693 | MsG0880046599.01.T01:CDS | 35.0% | |
| GTTTAAGAACCTGAAATGTG+TGG | + | Chr8:75330056-75330075 | MsG0880046599.01.T01:intron | 35.0% | |
| TCAGGCAATTATTGTTTCCT+CGG | + | Chr8:75331235-75331254 | MsG0880046599.01.T01:intron | 35.0% | |
| TGCTGCTGCATTTATAGTAA+TGG | + | Chr8:75330362-75330381 | MsG0880046599.01.T01:intron | 35.0% | |
| TTCATTCTGATCTCATGTGA+AGG | - | Chr8:75330094-75330113 | None:intergenic | 35.0% | |
| ! | AGACGATGATGGTTGTATTA+AGG | + | Chr8:75331044-75331063 | MsG0880046599.01.T01:CDS | 35.0% |
| ! | ATTATGCTGCTGCTTAATCA+AGG | + | Chr8:75329839-75329858 | MsG0880046599.01.T01:intron | 35.0% |
| ! | GTTTGGAATTTATACCTCAC+TGG | - | Chr8:75330447-75330466 | None:intergenic | 35.0% |
| !! | TTTCCTCGGTTGTTTTCATT+TGG | + | Chr8:75331249-75331268 | MsG0880046599.01.T01:intron | 35.0% |
| !!! | AGTTGCACTGTTATTTTCGA+GGG | + | Chr8:75330023-75330042 | MsG0880046599.01.T01:intron | 35.0% |
| !!! | GGTTGTTTTCATTTGGTGTT+AGG | + | Chr8:75331256-75331275 | MsG0880046599.01.T01:intron | 35.0% |
| ACACCAAATGAAAACAACCG+AGG | - | Chr8:75331255-75331274 | None:intergenic | 40.0% | |
| ACTGAAACGCTCGTGAATAT+CGG | + | Chr8:75330492-75330511 | MsG0880046599.01.T01:intron | 40.0% | |
| ATTGCAACAAGAACGTTCTC+TGG | - | Chr8:75331291-75331310 | None:intergenic | 40.0% | |
| CAATGAAACTATTGGCCACA+AGG | + | Chr8:75331363-75331382 | MsG0880046599.01.T01:CDS | 40.0% | |
| CCATTTCTGCAAACAACACA+TGG | - | Chr8:75330184-75330203 | None:intergenic | 40.0% | |
| CTGACCAATGAGAAAAGAAG+CGG | - | Chr8:75329656-75329675 | None:intergenic | 40.0% | |
| GAAGCAAATCTACTCACTCA+TGG | - | Chr8:75330892-75330911 | None:intergenic | 40.0% | |
| TCTGAAAATCTCGTTGCTAC+AGG | + | Chr8:75330248-75330267 | MsG0880046599.01.T01:CDS | 40.0% | |
| TTGTCTAAATTCCAGGGTGT+TGG | + | Chr8:75330594-75330613 | MsG0880046599.01.T01:intron | 40.0% | |
| ! | CAATTCATTTGAAGCTCACG+AGG | + | Chr8:75331307-75331326 | MsG0880046599.01.T01:CDS | 40.0% |
| ! | CGGGGTTCATTGATAACATT+TGG | + | Chr8:75331131-75331150 | MsG0880046599.01.T01:intron | 40.0% |
| ! | GTAGCAACGAGATTTTCAGA+CGG | - | Chr8:75330248-75330267 | None:intergenic | 40.0% |
| ! | TAGCAACGAGATTTTCAGAC+GGG | - | Chr8:75330247-75330266 | None:intergenic | 40.0% |
| ! | TGTAGCCAGTATCGAGAAAT+CGG | - | Chr8:75330828-75330847 | None:intergenic | 40.0% |
| ! | TTCTCCGCTTCTTTTCTCAT+TGG | + | Chr8:75329649-75329668 | MsG0880046599.01.T01:five_prime_UTR | 40.0% |
| !! | CCATGTGTTGTTTGCAGAAA+TGG | + | Chr8:75330181-75330200 | MsG0880046599.01.T01:intron | 40.0% |
| !!! | CAGTTGCACTGTTATTTTCG+AGG | + | Chr8:75330022-75330041 | MsG0880046599.01.T01:intron | 40.0% |
| AAGCGGAGAACAGTGAATGA+CGG | - | Chr8:75329639-75329658 | None:intergenic | 45.0% | |
| ACTCATGGGCACTATCAAGT+CGG | - | Chr8:75330877-75330896 | None:intergenic | 45.0% | |
| AGAGCTGCTCGATTCATCAA+CGG | + | Chr8:75330643-75330662 | MsG0880046599.01.T01:CDS | 45.0% | |
| ATCATCGTCTCCTGAAGCAA+CGG | - | Chr8:75331034-75331053 | None:intergenic | 45.0% | |
| CTGAAGTCCAGATTATGCTG+CGG | + | Chr8:75331111-75331130 | MsG0880046599.01.T01:intron | 45.0% | |
| CTTCATACCAGAGAAACCTC+CGG | + | Chr8:75329589-75329608 | MsG0880046599.01.T01:five_prime_UTR | 45.0% | |
| GTTGCTACAGGACTCATAGA+TGG | + | Chr8:75330260-75330279 | MsG0880046599.01.T01:CDS | 45.0% | |
| GTTTCTCTGGTATGAAGACG+CGG | - | Chr8:75329586-75329605 | None:intergenic | 45.0% | |
| TGAAGTCCAGATTATGCTGC+GGG | + | Chr8:75331112-75331131 | MsG0880046599.01.T01:intron | 45.0% | |
| TGCTTTATGGAAGACTGCGT+GGG | - | Chr8:75330314-75330333 | None:intergenic | 45.0% | |
| TTCTCCCGATTTCTCGATAC+TGG | + | Chr8:75330820-75330839 | MsG0880046599.01.T01:intron | 45.0% | |
| TTGCTTTATGGAAGACTGCG+TGG | - | Chr8:75330315-75330334 | None:intergenic | 45.0% | |
| ! | CTGCAGGTATCGTTATAGCT+CGG | + | Chr8:75330404-75330423 | MsG0880046599.01.T01:intron | 45.0% |
| ! | GTAGCCAGTATCGAGAAATC+GGG | - | Chr8:75330827-75330846 | None:intergenic | 45.0% |
| !!! | CTGTGTTTTAGCGGTGTTGA+CGG | + | Chr8:75330796-75330815 | MsG0880046599.01.T01:intron | 45.0% |
| !!! | TGTGTTTTAGCGGTGTTGAC+GGG | + | Chr8:75330797-75330816 | MsG0880046599.01.T01:intron | 45.0% |
| ACACTAATAGCGACCCAGTG+AGG | + | Chr8:75330430-75330449 | MsG0880046599.01.T01:CDS | 50.0% | |
| ACTGAGTCAACCGTTGCTTC+AGG | + | Chr8:75331021-75331040 | MsG0880046599.01.T01:CDS | 50.0% | |
| ATGAACCCCGCAGCATAATC+TGG | - | Chr8:75331121-75331140 | None:intergenic | 50.0% | |
| CAGCGATGACGATGACAAAC+TGG | - | Chr8:75330531-75330550 | None:intergenic | 50.0% | |
| CGAGCTATAACGATACCTGC+AGG | - | Chr8:75330406-75330425 | None:intergenic | 50.0% | |
| CTCATGGGCACTATCAAGTC+GGG | - | Chr8:75330876-75330895 | None:intergenic | 50.0% | |
| CTGGCTACAGATGTGGAAAC+TGG | + | Chr8:75330839-75330858 | MsG0880046599.01.T01:intron | 50.0% | |
| GAAGTCCAGATTATGCTGCG+GGG | + | Chr8:75331113-75331132 | MsG0880046599.01.T01:intron | 50.0% | |
| GCTTTATGGAAGACTGCGTG+GGG | - | Chr8:75330313-75330332 | None:intergenic | 50.0% | |
| GTTGCTTCAGGAGACGATGA+TGG | + | Chr8:75331033-75331052 | MsG0880046599.01.T01:CDS | 50.0% | |
| TAGCGAATCATGTGTCCTGC+AGG | + | Chr8:75330388-75330407 | MsG0880046599.01.T01:intron | 50.0% | |
| TATGTGGGTAGAGGTTGCGA+AGG | - | Chr8:75331202-75331221 | None:intergenic | 50.0% | |
| ! | CTCGATACTGGCTACAGATG+TGG | + | Chr8:75330832-75330851 | MsG0880046599.01.T01:intron | 50.0% |
| !! | GAACAGTGAATGACGGATGC+CGG | - | Chr8:75329632-75329651 | None:intergenic | 50.0% |
| CAGAGCGTGCCACACATTTC+AGG | - | Chr8:75330068-75330087 | None:intergenic | 55.0% | |
| GCTGCTCGATTCATCAACGG+CGG | + | Chr8:75330646-75330665 | MsG0880046599.01.T01:CDS | 55.0% | |
| GGCACTATCAAGTCGGGCAA+TGG | - | Chr8:75330870-75330889 | None:intergenic | 55.0% | |
| GGCATGAACTTCCAACACCC+TGG | - | Chr8:75330608-75330627 | None:intergenic | 55.0% | |
| TCGAGCAGCTCTGCAAGACT+CGG | - | Chr8:75330635-75330654 | None:intergenic | 55.0% | |
| TTATGGAAGACTGCGTGGGG+TGG | - | Chr8:75330310-75330329 | None:intergenic | 55.0% | |
| !! | AGCTCTGCAAGACTCGGTGT+GGG | - | Chr8:75330629-75330648 | None:intergenic | 55.0% |
| CGATTCATCAACGGCGGACG+TGG | + | Chr8:75330652-75330671 | MsG0880046599.01.T01:CDS | 60.0% | |
| !! | CAGCTCTGCAAGACTCGGTG+TGG | - | Chr8:75330630-75330649 | None:intergenic | 60.0% |
| ACCAGAGAAACCTCCGGCCG+CGG | + | Chr8:75329595-75329614 | MsG0880046599.01.T01:five_prime_UTR | 65.0% | |
| ACCGCGGCCGGAGGTTTCTC+TGG | - | Chr8:75329599-75329618 | None:intergenic | 70.0% | |
| ! | TGCCGGAGAGAGCACGACCG+CGG | - | Chr8:75329615-75329634 | None:intergenic | 70.0% |
| GGCCGCGGTCGTGCTCTCTC+CGG | + | Chr8:75329610-75329629 | MsG0880046599.01.T01:five_prime_UTR | 75.0% | |
| ! | GGAGAGAGCACGACCGCGGC+CGG | - | Chr8:75329611-75329630 | None:intergenic | 75.0% |
| !! | GAGAGCACGACCGCGGCCGG+AGG | - | Chr8:75329608-75329627 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 75329580 | 75331388 | 75329580 | ID=MsG0880046599.01;Name=MsG0880046599.01 |
| Chr8 | mRNA | 75329580 | 75331388 | 75329580 | ID=MsG0880046599.01.T01;Parent=MsG0880046599.01;Name=MsG0880046599.01.T01;_AED=0.50;_eAED=0.52;_QI=93|0.8|0.66|1|0.6|0.66|6|0|135 |
| Chr8 | exon | 75329580 | 75329670 | 75329580 | ID=MsG0880046599.01.T01:exon:31591;Parent=MsG0880046599.01.T01 |
| Chr8 | exon | 75330198 | 75330294 | 75330198 | ID=MsG0880046599.01.T01:exon:31592;Parent=MsG0880046599.01.T01 |
| Chr8 | exon | 75330410 | 75330451 | 75330410 | ID=MsG0880046599.01.T01:exon:31593;Parent=MsG0880046599.01.T01 |
| Chr8 | exon | 75330609 | 75330695 | 75330609 | ID=MsG0880046599.01.T01:exon:31594;Parent=MsG0880046599.01.T01 |
| Chr8 | exon | 75330993 | 75331065 | 75330993 | ID=MsG0880046599.01.T01:exon:31595;Parent=MsG0880046599.01.T01 |
| Chr8 | exon | 75331278 | 75331388 | 75331278 | ID=MsG0880046599.01.T01:exon:31596;Parent=MsG0880046599.01.T01 |
| Chr8 | five_prime_UTR | 75329580 | 75329670 | 75329580 | ID=MsG0880046599.01.T01:five_prime_utr;Parent=MsG0880046599.01.T01 |
| Chr8 | five_prime_UTR | 75330198 | 75330199 | 75330198 | ID=MsG0880046599.01.T01:five_prime_utr;Parent=MsG0880046599.01.T01 |
| Chr8 | CDS | 75330200 | 75330294 | 75330200 | ID=MsG0880046599.01.T01:cds;Parent=MsG0880046599.01.T01 |
| Chr8 | CDS | 75330410 | 75330451 | 75330410 | ID=MsG0880046599.01.T01:cds;Parent=MsG0880046599.01.T01 |
| Chr8 | CDS | 75330609 | 75330695 | 75330609 | ID=MsG0880046599.01.T01:cds;Parent=MsG0880046599.01.T01 |
| Chr8 | CDS | 75330993 | 75331065 | 75330993 | ID=MsG0880046599.01.T01:cds;Parent=MsG0880046599.01.T01 |
| Chr8 | CDS | 75331278 | 75331388 | 75331278 | ID=MsG0880046599.01.T01:cds;Parent=MsG0880046599.01.T01 |
| Gene Sequence |
| Protein sequence |
