Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007698.01.T01 | XP_003594522.1 | 64.062 | 64 | 15 | 2 | 1 | 64 | 1 | 56 | 5.12E-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007698.01.T01 | G7IKU2 | 64.062 | 64 | 15 | 2 | 1 | 64 | 1 | 56 | 2.45e-12 | 68.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048748.01 | MsG0280007698.01 | 0.808192 | 3.494169e-50 | 1.985083e-47 |
| MsG0080048849.01 | MsG0280007698.01 | 0.800661 | 1.297773e-48 | 6.077219e-46 |
| MsG0180001100.01 | MsG0280007698.01 | 0.802409 | 5.687867e-49 | 2.784239e-46 |
| MsG0180002024.01 | MsG0280007698.01 | 0.819718 | 1.002731e-52 | 7.776835e-50 |
| MsG0180003193.01 | MsG0280007698.01 | 0.806760 | 7.034140e-50 | 3.849434e-47 |
| MsG0180004012.01 | MsG0280007698.01 | 0.814151 | 1.783040e-51 | 1.187116e-48 |
| MsG0180004025.01 | MsG0280007698.01 | 0.813976 | 1.948396e-51 | 1.291039e-48 |
| MsG0180004112.01 | MsG0280007698.01 | 0.856164 | 3.871771e-62 | 9.156084e-59 |
| MsG0180005829.01 | MsG0280007698.01 | 0.812251 | 4.657482e-51 | 2.946546e-48 |
| MsG0180006054.01 | MsG0280007698.01 | 0.844043 | 9.653301e-59 | 1.539409e-55 |
| MsG0280007417.01 | MsG0280007698.01 | 0.840682 | 7.503961e-58 | 1.077003e-54 |
| MsG0280007698.01 | MsG0280007877.01 | 0.813898 | 2.027695e-51 | 1.340790e-48 |
| MsG0280007698.01 | MsG0280008113.01 | 0.805736 | 1.155697e-49 | 6.161721e-47 |
| MsG0280007698.01 | MsG0280008602.01 | 0.813667 | 2.279062e-51 | 1.497635e-48 |
| MsG0280007698.01 | MsG0280010586.01 | 0.831198 | 1.912601e-55 | 2.060699e-52 |
| MsG0280007698.01 | MsG0280010587.01 | 0.811126 | 8.183623e-51 | 5.024127e-48 |
| MsG0280007698.01 | MsG0280010807.01 | 0.829757 | 4.305541e-55 | 4.448427e-52 |
| MsG0280007698.01 | MsG0280010916.01 | 0.813241 | 2.827158e-51 | 1.836249e-48 |
| MsG0280007698.01 | MsG0280011272.01 | -0.807023 | 6.187333e-50 | 3.409275e-47 |
| MsG0280007698.01 | MsG0280011404.01 | 0.847594 | 1.047981e-59 | 1.872016e-56 |
| MsG0280007698.01 | MsG0280011424.01 | 0.835241 | 1.881303e-56 | 2.287237e-53 |
| MsG0280007698.01 | MsG0380012005.01 | 0.800327 | 1.518003e-48 | 7.048662e-46 |
| MsG0280007698.01 | MsG0380012567.01 | 0.825566 | 4.370277e-54 | 3.997920e-51 |
| MsG0280007698.01 | MsG0380013342.01 | 0.837478 | 5.076465e-57 | 6.602701e-54 |
| MsG0280007698.01 | MsG0380014517.01 | 0.818318 | 2.086217e-52 | 1.556467e-49 |
| MsG0280007698.01 | MsG0380014727.01 | 0.815299 | 9.924611e-52 | 6.816387e-49 |
| MsG0280007698.01 | MsG0380015486.01 | 0.804578 | 2.020095e-49 | 1.045312e-46 |
| MsG0280007698.01 | MsG0380015847.01 | -0.814637 | 1.392141e-51 | 9.391664e-49 |
| MsG0280007698.01 | MsG0380015891.01 | 0.812642 | 3.826141e-51 | 2.445830e-48 |
| MsG0280007698.01 | MsG0380016285.01 | 0.801493 | 8.772424e-49 | 4.195275e-46 |
| MsG0280007698.01 | MsG0380016391.01 | 0.809592 | 1.753860e-50 | 1.034000e-47 |
| MsG0280007698.01 | MsG0380016879.01 | 0.810703 | 1.010151e-50 | 6.132425e-48 |
| MsG0280007698.01 | MsG0380017048.01 | 0.808444 | 3.087719e-50 | 1.765846e-47 |
| MsG0280007698.01 | MsG0380017293.01 | 0.817726 | 2.839205e-52 | 2.084153e-49 |
| MsG0280007698.01 | MsG0380017437.01 | -0.841978 | 3.421877e-58 | 5.113638e-55 |
| MsG0280007698.01 | MsG0380017931.01 | 0.808534 | 2.954385e-50 | 1.693494e-47 |
| MsG0280007698.01 | MsG0480018236.01 | 0.802780 | 4.768164e-49 | 2.356252e-46 |
| MsG0280007698.01 | MsG0480019065.01 | 0.815544 | 8.754847e-52 | 6.053761e-49 |
| MsG0280007698.01 | MsG0480019083.01 | 0.828821 | 7.264687e-55 | 7.301460e-52 |
| MsG0280007698.01 | MsG0480019313.01 | 0.817385 | 3.389232e-52 | 2.464755e-49 |
| MsG0280007698.01 | MsG0480019384.01 | 0.816464 | 5.455164e-52 | 3.868038e-49 |
| MsG0280007698.01 | MsG0480020322.01 | 0.875900 | 2.138594e-68 | 1.016305e-64 |
| MsG0280007698.01 | MsG0480020323.01 | 0.881128 | 3.104458e-70 | 1.796839e-66 |
| MsG0280007698.01 | MsG0480021564.01 | 0.802688 | 4.981152e-49 | 2.455621e-46 |
| MsG0280007698.01 | MsG0480022178.01 | 0.802353 | 5.839737e-49 | 2.854537e-46 |
| MsG0280007698.01 | MsG0480022624.01 | 0.807016 | 6.210155e-50 | 3.421179e-47 |
| MsG0280007698.01 | MsG0480022802.01 | 0.813992 | 1.932753e-51 | 1.281232e-48 |
| MsG0280007698.01 | MsG0480022918.01 | 0.800638 | 1.312382e-48 | 6.141827e-46 |
| MsG0280007698.01 | MsG0480023045.01 | 0.803703 | 3.070941e-49 | 1.553729e-46 |
| MsG0280007698.01 | MsG0580024045.01 | 0.800752 | 1.243505e-48 | 5.836318e-46 |
| MsG0280007698.01 | MsG0580024285.01 | 0.815517 | 8.876592e-52 | 6.133547e-49 |
| MsG0280007698.01 | MsG0580024363.01 | -0.801133 | 1.039596e-48 | 4.926928e-46 |
| MsG0280007698.01 | MsG0580024717.01 | 0.812253 | 4.651673e-51 | 2.943098e-48 |
| MsG0280007698.01 | MsG0580024775.01 | 0.804866 | 1.758554e-49 | 9.168591e-47 |
| MsG0280007698.01 | MsG0580024788.01 | 0.854727 | 1.015000e-61 | 2.288565e-58 |
| MsG0280007698.01 | MsG0580024997.01 | 0.803944 | 2.737062e-49 | 1.393522e-46 |
| MsG0280007698.01 | MsG0580025132.01 | 0.814116 | 1.815143e-51 | 1.207328e-48 |
| MsG0280007698.01 | MsG0580025226.01 | 0.808883 | 2.487603e-50 | 1.438992e-47 |
| MsG0280007698.01 | MsG0580025644.01 | 0.839029 | 2.023169e-57 | 2.759039e-54 |
| MsG0280007698.01 | MsG0580025827.01 | 0.840802 | 6.982805e-58 | 1.005979e-54 |
| MsG0280007698.01 | MsG0580025832.01 | 0.845734 | 3.375329e-59 | 5.679721e-56 |
| MsG0280007698.01 | MsG0580026304.01 | 0.850406 | 1.732977e-60 | 3.391246e-57 |
| MsG0280007698.01 | MsG0580026498.01 | 0.834779 | 2.459803e-56 | 2.948729e-53 |
| MsG0280007698.01 | MsG0580026510.01 | 0.801129 | 1.041447e-48 | 4.935166e-46 |
| MsG0280007698.01 | MsG0580027789.01 | 0.806131 | 9.547679e-50 | 5.141832e-47 |
| MsG0280007698.01 | MsG0580028428.01 | 0.812873 | 3.405882e-51 | 2.190339e-48 |
| MsG0280007698.01 | MsG0580028552.01 | 0.802997 | 4.302009e-49 | 2.137416e-46 |
| MsG0280007698.01 | MsG0580029472.01 | 0.812701 | 3.713480e-51 | 2.377537e-48 |
| MsG0280007698.01 | MsG0680030514.01 | 0.803615 | 3.202858e-49 | 1.616875e-46 |
| MsG0280007698.01 | MsG0680030599.01 | 0.835465 | 1.652054e-56 | 2.021836e-53 |
| MsG0280007698.01 | MsG0680030907.01 | 0.830043 | 3.667458e-55 | 3.819967e-52 |
| MsG0280007698.01 | MsG0680031996.01 | 0.809265 | 2.061035e-50 | 1.204537e-47 |
| MsG0280007698.01 | MsG0680031998.01 | 0.810438 | 1.152938e-50 | 6.949343e-48 |
| MsG0280007698.01 | MsG0680032254.01 | 0.809725 | 1.641629e-50 | 9.712678e-48 |
| MsG0280007698.01 | MsG0680032279.01 | 0.810410 | 1.168797e-50 | 7.039891e-48 |
| MsG0280007698.01 | MsG0680033465.01 | 0.803150 | 3.999812e-49 | 1.995175e-46 |
| MsG0280007698.01 | MsG0680033602.01 | 0.813591 | 2.368213e-51 | 1.553022e-48 |
| MsG0280007698.01 | MsG0680033639.01 | 0.817867 | 2.638820e-52 | 1.944446e-49 |
| MsG0280007698.01 | MsG0680034032.01 | 0.802237 | 6.170675e-49 | 3.007264e-46 |
| MsG0280007698.01 | MsG0680034909.01 | -0.807913 | 4.007418e-50 | 2.259704e-47 |
| MsG0280007698.01 | MsG0680035707.01 | 0.822055 | 2.906525e-53 | 2.406191e-50 |
| MsG0280007698.01 | MsG0780036509.01 | 0.807373 | 5.216658e-50 | 2.900664e-47 |
| MsG0280007698.01 | MsG0780036803.01 | 0.826632 | 2.438098e-54 | 2.299180e-51 |
| MsG0280007698.01 | MsG0780037105.01 | 0.821553 | 3.798872e-53 | 3.100576e-50 |
| MsG0280007698.01 | MsG0780039336.01 | 0.810405 | 1.171766e-50 | 7.056764e-48 |
| MsG0280007698.01 | MsG0780039435.01 | 0.802711 | 4.927782e-49 | 2.430757e-46 |
| MsG0280007698.01 | MsG0780040235.01 | 0.811235 | 7.748068e-51 | 4.770445e-48 |
| MsG0280007698.01 | MsG0780040576.01 | -0.810687 | 1.018230e-50 | 6.178803e-48 |
| MsG0280007698.01 | MsG0780040681.01 | 0.800679 | 1.287263e-48 | 6.030569e-46 |
| MsG0280007698.01 | MsG0780040763.01 | 0.801509 | 8.707472e-49 | 4.165851e-46 |
| MsG0280007698.01 | MsG0780041187.01 | 0.801639 | 8.187774e-49 | 3.930002e-46 |
| MsG0280007698.01 | MsG0780041191.01 | 0.856406 | 3.288522e-62 | 7.840978e-59 |
| MsG0280007698.01 | MsG0780041301.01 | 0.846108 | 2.671163e-59 | 4.548558e-56 |
| MsG0280007698.01 | MsG0780041468.01 | 0.818205 | 2.213400e-52 | 1.646172e-49 |
| MsG0280007698.01 | MsG0880041852.01 | 0.819869 | 9.259727e-53 | 7.211894e-50 |
| MsG0280007698.01 | MsG0880041861.01 | 0.827860 | 1.238859e-54 | 1.210843e-51 |
| MsG0280007698.01 | MsG0880041864.01 | 0.850994 | 1.184260e-60 | 2.362617e-57 |
| MsG0280007698.01 | MsG0880041999.01 | 0.800306 | 1.533553e-48 | 7.116919e-46 |
| MsG0280007698.01 | MsG0880042000.01 | 0.808603 | 2.856095e-50 | 1.640032e-47 |
| MsG0280007698.01 | MsG0880042022.01 | 0.829669 | 4.522379e-55 | 4.660096e-52 |
| MsG0280007698.01 | MsG0880042248.01 | 0.804363 | 2.239847e-49 | 1.152648e-46 |
| MsG0280007698.01 | MsG0880043157.01 | 0.828165 | 1.046320e-54 | 1.031784e-51 |
| MsG0280007698.01 | MsG0880043298.01 | 0.802291 | 6.015893e-49 | 2.935937e-46 |
| MsG0280007698.01 | MsG0880043955.01 | 0.825612 | 4.261918e-54 | 3.904084e-51 |
| MsG0280007698.01 | MsG0880045285.01 | 0.830540 | 2.772646e-55 | 2.929749e-52 |
| MsG0280007698.01 | MsG0880045370.01 | 0.803531 | 3.334564e-49 | 1.679795e-46 |
| MsG0280007698.01 | MsG0880045771.01 | 0.856021 | 4.261690e-62 | 1.003246e-58 |
| MsG0280007698.01 | MsG0880045783.01 | 0.808079 | 3.693905e-50 | 2.092195e-47 |
| MsG0280007698.01 | MsG0880045992.01 | 0.856023 | 4.258131e-62 | 1.002453e-58 |
| MsG0280007698.01 | MsG0880046268.01 | 0.801790 | 7.623474e-49 | 3.673252e-46 |
| MsG0280007698.01 | MsG0880046296.01 | 0.817530 | 3.143157e-52 | 2.294785e-49 |
| MsG0280007698.01 | MsG0880046533.01 | 0.804972 | 1.670976e-49 | 8.735483e-47 |
| MsG0280007698.01 | MsG0880046699.01 | 0.843078 | 1.747909e-58 | 2.703523e-55 |
| MsG0280007698.01 | MsG0880047481.01 | -0.831346 | 1.758456e-55 | 1.903023e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007698.01.T01 | MTR_2g030170 | 64.062 | 64 | 15 | 2 | 1 | 64 | 1 | 56 | 6.20e-16 | 68.6 |
| MsG0280007698.01.T01 | MTR_2g030170 | 60.000 | 65 | 16 | 2 | 1 | 64 | 1 | 56 | 2.15e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAAGTGTTGTTGAGTT+TGG | 0.299925 | 2:+19386118 | None:intergenic |
| TGTCCATCAGCCTCGTTATC+TGG | 0.370392 | 2:+19383908 | None:intergenic |
| GGACAGAGTGCATGTGAATC+AGG | 0.390221 | 2:-19384636 | MsG0280007698.01.T01:five_prime_UTR |
| ATTGAAGTGTTGTTGAGTTT+GGG | 0.418296 | 2:+19386119 | None:intergenic |
| AAATTCCGTTTGCAGAATAT+AGG | 0.427981 | 2:+19383860 | None:intergenic |
| GCACCTCCACAGCTTGGCAC+GGG | 0.466695 | 2:-19383796 | MsG0280007698.01.T01:CDS |
| CGCCGGTATTGATAATGCTC+AGG | 0.487682 | 2:-19383833 | MsG0280007698.01.T01:CDS |
| TGTTGTTGAGTTTGGGACAG+TGG | 0.506320 | 2:+19386126 | None:intergenic |
| TGCAGCCTATATTCTGCAAA+CGG | 0.508482 | 2:-19383865 | MsG0280007698.01.T01:CDS |
| GCTTGGCACGGGGCATGCTA+TGG | 0.522353 | 2:-19383785 | MsG0280007698.01.T01:CDS |
| AGCACCTCCACAGCTTGGCA+CGG | 0.523882 | 2:-19383797 | MsG0280007698.01.T01:CDS |
| GCATGCCCCGTGCCAAGCTG+TGG | 0.532400 | 2:+19383790 | None:intergenic |
| TGCCCCGTGCCAAGCTGTGG+AGG | 0.541599 | 2:+19383793 | None:intergenic |
| AACCTGAGCATTATCAATAC+CGG | 0.557780 | 2:+19383831 | None:intergenic |
| CACCTCCACAGCTTGGCACG+GGG | 0.573071 | 2:-19383795 | MsG0280007698.01.T01:CDS |
| TGTCCAGATAACGAGGCTGA+TGG | 0.582397 | 2:-19383911 | MsG0280007698.01.T01:CDS |
| TATGCAGCACCTCCACAGCT+TGG | 0.593812 | 2:-19383802 | MsG0280007698.01.T01:CDS |
| GAATTGAAAATGATAGAAGA+AGG | 0.623593 | 2:+19386087 | None:intergenic |
| ATCATGTGTGGAAGAAGTCA+TGG | 0.636060 | 2:+19384610 | None:intergenic |
| TCTTCCACACATGATCCCAC+AGG | 0.647344 | 2:-19384602 | MsG0280007698.01.T01:intron |
| AATACCTGTGGGATCATGTG+TGG | 0.669627 | 2:+19384598 | None:intergenic |
| AAATTGTTGTCCAGATAACG+AGG | 0.691918 | 2:-19383918 | MsG0280007698.01.T01:CDS |
| GCAAACGGAATTTCTCACGC+CGG | 0.699389 | 2:-19383850 | MsG0280007698.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTAATAACATAATAA+TGG | + | Chr2:19385893-19385912 | None:intergenic | 10.0% |
| !! | ATCTAAAAAGATTCAAAATT+TGG | + | Chr2:19384000-19384019 | None:intergenic | 15.0% |
| !! | TAGAAAAATCTATAATTGAA+TGG | - | Chr2:19385197-19385216 | MsG0280007698.01.T01:intron | 15.0% |
| !! | TATCAGTACTTAAATATATT+AGG | + | Chr2:19385533-19385552 | None:intergenic | 15.0% |
| !! | TTGATAAAACAAAATCATTT+AGG | - | Chr2:19385430-19385449 | MsG0280007698.01.T01:intron | 15.0% |
| !!! | AAAATTTAGAATTGTCATTT+TGG | - | Chr2:19384366-19384385 | MsG0280007698.01.T01:intron | 15.0% |
| !! | AAAAACCCAAAATAGAAAAT+TGG | + | Chr2:19384168-19384187 | None:intergenic | 20.0% |
| !! | AAAACCCAAAATAGAAAATT+GGG | + | Chr2:19384167-19384186 | None:intergenic | 20.0% |
| !! | ATTAGTTAAAGCTTATTATG+AGG | - | Chr2:19384467-19384486 | MsG0280007698.01.T01:intron | 20.0% |
| !! | ATTTGATTATGCTTATTAGA+TGG | - | Chr2:19384247-19384266 | MsG0280007698.01.T01:intron | 20.0% |
| !! | CATACATTCAAATTGTATAA+GGG | + | Chr2:19384667-19384686 | None:intergenic | 20.0% |
| !! | CATTAAATGATTGATTAACT+AGG | - | Chr2:19384782-19384801 | MsG0280007698.01.T01:intron | 20.0% |
| !! | TGATAGAATTATTGTAAACA+GGG | - | Chr2:19385548-19385567 | MsG0280007698.01.T01:intron | 20.0% |
| !! | TTAGAAAATTGGGTTAAAAA+GGG | - | Chr2:19384090-19384109 | MsG0280007698.01.T01:intron | 20.0% |
| !!! | AGGAAAAAAATTGCAATTTT+TGG | - | Chr2:19384211-19384230 | MsG0280007698.01.T01:intron | 20.0% |
| !!! | GGAAAAAAATTGCAATTTTT+GGG | - | Chr2:19384212-19384231 | MsG0280007698.01.T01:intron | 20.0% |
| !!! | TATTGATTTTTTGGATATGA+TGG | - | Chr2:19384277-19384296 | MsG0280007698.01.T01:intron | 20.0% |
| ! | AAAACAAGTGTCAAATAGTA+TGG | + | Chr2:19384444-19384463 | None:intergenic | 25.0% |
| ! | AGAATTACTTCTTCAAATCA+TGG | - | Chr2:19385478-19385497 | MsG0280007698.01.T01:intron | 25.0% |
| ! | AGATTTCCAAAATCAAAGAA+AGG | + | Chr2:19384861-19384880 | None:intergenic | 25.0% |
| ! | ATCTTTAAACAACATTCTCT+AGG | - | Chr2:19385858-19385877 | MsG0280007698.01.T01:intron | 25.0% |
| ! | ATTTGAAGAAGTAATTCTTC+TGG | + | Chr2:19385476-19385495 | None:intergenic | 25.0% |
| ! | CTGATAGAATTATTGTAAAC+AGG | - | Chr2:19385547-19385566 | MsG0280007698.01.T01:intron | 25.0% |
| ! | CTTAGAAAATTGGGTTAAAA+AGG | - | Chr2:19384089-19384108 | MsG0280007698.01.T01:intron | 25.0% |
| ! | GAATTGAAAATGATAGAAGA+AGG | + | Chr2:19383878-19383897 | None:intergenic | 25.0% |
| ! | GCATACATTCAAATTGTATA+AGG | + | Chr2:19384668-19384687 | None:intergenic | 25.0% |
| ! | GTAAACTCCTAATACATTTA+GGG | - | Chr2:19385598-19385617 | MsG0280007698.01.T01:intron | 25.0% |
| ! | TAGAAAATTGGGTTAAAAAG+GGG | - | Chr2:19384091-19384110 | MsG0280007698.01.T01:intron | 25.0% |
| ! | TATCGTATGCTTAGAAAATT+GGG | - | Chr2:19384080-19384099 | MsG0280007698.01.T01:intron | 25.0% |
| ! | TATTTACAGGAAAATCTCTT+AGG | - | Chr2:19385383-19385402 | MsG0280007698.01.T01:intron | 25.0% |
| ! | TGTAAACTCCTAATACATTT+AGG | - | Chr2:19385597-19385616 | MsG0280007698.01.T01:intron | 25.0% |
| ! | TTATCGTATGCTTAGAAAAT+TGG | - | Chr2:19384079-19384098 | MsG0280007698.01.T01:intron | 25.0% |
| !! | AACTAATATCTAGGACAAAA+TGG | + | Chr2:19385042-19385061 | None:intergenic | 25.0% |
| !! | ATTACATTTTGCACGTTTTT+GGG | + | Chr2:19385996-19386015 | None:intergenic | 25.0% |
| !! | ATTTTCAATTCACAACACTA+AGG | - | Chr2:19383887-19383906 | MsG0280007698.01.T01:CDS | 25.0% |
| !! | CTTTTTAGATTTTCCTTTCT+GGG | - | Chr2:19384010-19384029 | MsG0280007698.01.T01:intron | 25.0% |
| !! | TATTACATTTTGCACGTTTT+TGG | + | Chr2:19385997-19386016 | None:intergenic | 25.0% |
| !! | TCTTTTTAGATTTTCCTTTC+TGG | - | Chr2:19384009-19384028 | MsG0280007698.01.T01:intron | 25.0% |
| !! | TTTGTTTGATAACTAACTTC+AGG | + | Chr2:19386027-19386046 | None:intergenic | 25.0% |
| !!! | CAATTCTAAATTTTCAAGCA+AGG | + | Chr2:19384360-19384379 | None:intergenic | 25.0% |
| !!! | GAATTTTGACAGAACTTAAA+TGG | - | Chr2:19384565-19384584 | MsG0280007698.01.T01:intron | 25.0% |
| !!! | GGTTATGCTTATTGATTTTT+TGG | - | Chr2:19384268-19384287 | MsG0280007698.01.T01:intron | 25.0% |
| !!! | GTTTTTTTGTTTCTAGTTGT+AGG | - | Chr2:19385071-19385090 | MsG0280007698.01.T01:intron | 25.0% |
| !!! | TTTGTTCCTTTCTTTGATTT+TGG | - | Chr2:19384852-19384871 | MsG0280007698.01.T01:intron | 25.0% |
| !!! | TTTTCCTTTACTTGTTTTGT+TGG | - | Chr2:19384537-19384556 | MsG0280007698.01.T01:intron | 25.0% |
| !!! | TTTTGGGTTTTTGATTTTCA+TGG | - | Chr2:19384176-19384195 | MsG0280007698.01.T01:intron | 25.0% |
| AAATTCCGTTTGCAGAATAT+AGG | + | Chr2:19386105-19386124 | None:intergenic | 30.0% | |
| AAGAGACAGAACTAATATCT+AGG | + | Chr2:19385051-19385070 | None:intergenic | 30.0% | |
| AATAAGCAGAAAACAGCTAA+TGG | + | Chr2:19385703-19385722 | None:intergenic | 30.0% | |
| ACATAAAACTTCAGATAGCA+TGG | + | Chr2:19385932-19385951 | None:intergenic | 30.0% | |
| ATCCATGGCATAATTAATAG+AGG | - | Chr2:19384640-19384659 | MsG0280007698.01.T01:five_prime_UTR | 30.0% | |
| CAAAATAGAAAATTGGGAAG+GGG | + | Chr2:19384161-19384180 | None:intergenic | 30.0% | |
| CAATCCAACAAAACAAGTAA+AGG | + | Chr2:19384544-19384563 | None:intergenic | 30.0% | |
| CCAAAATAGAAAATTGGGAA+GGG | + | Chr2:19384162-19384181 | None:intergenic | 30.0% | |
| GCTATGATAAAATTCACACT+TGG | + | Chr2:19384338-19384357 | None:intergenic | 30.0% | |
| TAACTGCTATAAACTGTAAC+TGG | - | Chr2:19383953-19383972 | MsG0280007698.01.T01:intron | 30.0% | |
| TAATTATGCCATGGATCATA+TGG | + | Chr2:19384636-19384655 | None:intergenic | 30.0% | |
| TCCATGGCATAATTAATAGA+GGG | - | Chr2:19384641-19384660 | MsG0280007698.01.T01:five_prime_UTR | 30.0% | |
| TGATAACAATCCTAAGAACT+TGG | - | Chr2:19384942-19384961 | MsG0280007698.01.T01:intron | 30.0% | |
| ! | ATTTTCCTGTAAATACCTGT+GGG | + | Chr2:19385378-19385397 | None:intergenic | 30.0% |
| ! | CCTTCCCAATTTTCTATTTT+GGG | - | Chr2:19384160-19384179 | MsG0280007698.01.T01:intron | 30.0% |
| ! | TGGGTTTTGCTCAATTTTTA+TGG | - | Chr2:19384029-19384048 | MsG0280007698.01.T01:intron | 30.0% |
| ! | TTACATTTTGCACGTTTTTG+GGG | + | Chr2:19385995-19386014 | None:intergenic | 30.0% |
| ! | TTTTCTTCATTTCCTTTTCC+CGG | - | Chr2:19385234-19385253 | MsG0280007698.01.T01:intron | 30.0% |
| !! | AATTGAAGTGTTGTTGAGTT+TGG | + | Chr2:19383847-19383866 | None:intergenic | 30.0% |
| !! | ACAGAACTTAAATGGATTGA+TGG | - | Chr2:19384573-19384592 | MsG0280007698.01.T01:intron | 30.0% |
| !! | ATTGAAGTGTTGTTGAGTTT+GGG | + | Chr2:19383846-19383865 | None:intergenic | 30.0% |
| !! | TTTTGAGAGCTTATGAAAAC+CGG | - | Chr2:19385666-19385685 | MsG0280007698.01.T01:intron | 30.0% |
| !!! | GGCATTTTTATTTTCTGATG+TGG | - | Chr2:19385404-19385423 | MsG0280007698.01.T01:intron | 30.0% |
| !!! | TTTCATGGTTTTTGAGTGAA+AGG | - | Chr2:19384191-19384210 | MsG0280007698.01.T01:intron | 30.0% |
| AAACAGGCCCTAAATGTATT+AGG | + | Chr2:19385608-19385627 | None:intergenic | 35.0% | |
| AAATTGAGCAAAACCCAGAA+AGG | + | Chr2:19384026-19384045 | None:intergenic | 35.0% | |
| AAATTGTTGTCCAGATAACG+AGG | - | Chr2:19386044-19386063 | MsG0280007698.01.T01:intron | 35.0% | |
| AACCTGAGCATTATCAATAC+CGG | + | Chr2:19386134-19386153 | None:intergenic | 35.0% | |
| AAGAAAGGAACAAAAGCCAA+AGG | + | Chr2:19384846-19384865 | None:intergenic | 35.0% | |
| AGAAAGGAACAAAAGCCAAA+GGG | + | Chr2:19384845-19384864 | None:intergenic | 35.0% | |
| AGCAGAACAAACACTGTTAA+CGG | + | Chr2:19385297-19385316 | None:intergenic | 35.0% | |
| ATACAATATGTGTGCTGCAT+GGG | - | Chr2:19384819-19384838 | MsG0280007698.01.T01:intron | 35.0% | |
| CCCAAAATAGAAAATTGGGA+AGG | + | Chr2:19384163-19384182 | None:intergenic | 35.0% | |
| CTTCTTCAAATCATGGTTGT+CGG | - | Chr2:19385485-19385504 | MsG0280007698.01.T01:intron | 35.0% | |
| GACAAAATCACCAAGTTCTT+AGG | + | Chr2:19384955-19384974 | None:intergenic | 35.0% | |
| GAGATTGAGATTTGACATGT+TGG | - | Chr2:19384303-19384322 | MsG0280007698.01.T01:intron | 35.0% | |
| TCAAACAAGTCAATCCAAAC+AGG | + | Chr2:19385624-19385643 | None:intergenic | 35.0% | |
| TCCAAAATCCATATGATCCA+TGG | - | Chr2:19384625-19384644 | MsG0280007698.01.T01:exon | 35.0% | |
| TGCATCATTATAATCCTGCA+TGG | - | Chr2:19384994-19385013 | MsG0280007698.01.T01:intron | 35.0% | |
| ! | ACTTATGCTGTCTCTTTTAG+TGG | - | Chr2:19384710-19384729 | MsG0280007698.01.T01:intron | 35.0% |
| ! | CCCTTCCCAATTTTCTATTT+TGG | - | Chr2:19384159-19384178 | MsG0280007698.01.T01:intron | 35.0% |
| ! | GATTTTCCTGTAAATACCTG+TGG | + | Chr2:19385379-19385398 | None:intergenic | 35.0% |
| ! | GGATCATATGGATTTTGGAT+TGG | + | Chr2:19384624-19384643 | None:intergenic | 35.0% |
| ! | TAATACATTTAGGGCCTGTT+TGG | - | Chr2:19385607-19385626 | MsG0280007698.01.T01:intron | 35.0% |
| !! | ACGACTGTGCTCTAAAAATT+TGG | + | Chr2:19385106-19385125 | None:intergenic | 35.0% |
| ATAGAACAGAATCCGGGAAA+AGG | + | Chr2:19385249-19385268 | None:intergenic | 40.0% | |
| ATCATGTGTGGAAGAAGTCA+TGG | + | Chr2:19385355-19385374 | None:intergenic | 40.0% | |
| ATGATCCCACAGGTATTTAC+AGG | - | Chr2:19385370-19385389 | MsG0280007698.01.T01:intron | 40.0% | |
| CATACAATATGTGTGCTGCA+TGG | - | Chr2:19384818-19384837 | MsG0280007698.01.T01:intron | 40.0% | |
| CATGACATTGCAGTGAATCA+TGG | - | Chr2:19385135-19385154 | MsG0280007698.01.T01:intron | 40.0% | |
| GCCCTCTATTAATTATGCCA+TGG | + | Chr2:19384645-19384664 | None:intergenic | 40.0% | |
| GTTTGTTCTGCTTCCAGATT+TGG | - | Chr2:19385305-19385324 | MsG0280007698.01.T01:intron | 40.0% | |
| TGCAGCCTATATTCTGCAAA+CGG | - | Chr2:19386097-19386116 | MsG0280007698.01.T01:five_prime_UTR | 40.0% | |
| TTGGAAATCTGAACTTGAGC+TGG | - | Chr2:19384871-19384890 | MsG0280007698.01.T01:intron | 40.0% | |
| ! | GCCATGGATCATATGGATTT+TGG | + | Chr2:19384629-19384648 | None:intergenic | 40.0% |
| ! | GCTAATGGACAAGTCATAAC+CGG | + | Chr2:19385688-19385707 | None:intergenic | 40.0% |
| !! | ATAGGACTAGTCAAAGGCAT+CGG | + | Chr2:19385965-19385984 | None:intergenic | 40.0% |
| AATACCTGTGGGATCATGTG+TGG | + | Chr2:19385367-19385386 | None:intergenic | 45.0% | |
| ACATGCACTCTGTCCAAATC+TGG | + | Chr2:19385321-19385340 | None:intergenic | 45.0% | |
| CTCCGTCATAGAACAGAATC+CGG | + | Chr2:19385256-19385275 | None:intergenic | 45.0% | |
| GACAAAATGGAGCCCACAAA+AGG | + | Chr2:19385029-19385048 | None:intergenic | 45.0% | |
| TCCCGGATTCTGTTCTATGA+CGG | - | Chr2:19385251-19385270 | MsG0280007698.01.T01:intron | 45.0% | |
| TCCGTCATAGAACAGAATCC+GGG | + | Chr2:19385255-19385274 | None:intergenic | 45.0% | |
| ! | CTTTGACTAGTCCTATTCCC+TGG | - | Chr2:19385969-19385988 | MsG0280007698.01.T01:intron | 45.0% |
| ! | TATTGCAGCTAAGAGAGCAC+AGG | + | Chr2:19384742-19384761 | None:intergenic | 45.0% |
| ! | TGTTGTTGAGTTTGGGACAG+TGG | + | Chr2:19383839-19383858 | None:intergenic | 45.0% |
| !! | ATGGCTCTATCTGCCTTTTG+TGG | - | Chr2:19385013-19385032 | MsG0280007698.01.T01:intron | 45.0% |
| !! | CAGGGAATAGGACTAGTCAA+AGG | + | Chr2:19385971-19385990 | None:intergenic | 45.0% |
| !! | TGGCTCTATCTGCCTTTTGT+GGG | - | Chr2:19385014-19385033 | MsG0280007698.01.T01:intron | 45.0% |
| AAAGGCAGATAGAGCCATGC+AGG | + | Chr2:19385011-19385030 | None:intergenic | 50.0% | |
| ATCCCTTGCACTTGTGCTCA+GGG | - | Chr2:19384905-19384924 | MsG0280007698.01.T01:intron | 50.0% | |
| GCAAACGGAATTTCTCACGC+CGG | - | Chr2:19386112-19386131 | MsG0280007698.01.T01:five_prime_UTR | 50.0% | |
| GGACAGAGTGCATGTGAATC+AGG | - | Chr2:19385326-19385345 | MsG0280007698.01.T01:intron | 50.0% | |
| TCTTCCACACATGATCCCAC+AGG | - | Chr2:19385360-19385379 | MsG0280007698.01.T01:intron | 50.0% | |
| TGTCCAGATAACGAGGCTGA+TGG | - | Chr2:19386051-19386070 | MsG0280007698.01.T01:intron | 50.0% | |
| TGTCCATCAGCCTCGTTATC+TGG | + | Chr2:19386057-19386076 | None:intergenic | 50.0% | |
| TTCCCTGAGCACAAGTGCAA+GGG | + | Chr2:19384910-19384929 | None:intergenic | 50.0% | |
| !! | CGCCGGTATTGATAATGCTC+AGG | - | Chr2:19386129-19386148 | MsG0280007698.01.T01:five_prime_UTR | 50.0% |
| !!! | TTTGCACGTTTTTGGGGCCA+GGG | + | Chr2:19385989-19386008 | None:intergenic | 50.0% |
| !!! | TTTTGCACGTTTTTGGGGCC+AGG | + | Chr2:19385990-19386009 | None:intergenic | 50.0% |
| CATCCCTTGCACTTGTGCTC+AGG | - | Chr2:19384904-19384923 | MsG0280007698.01.T01:intron | 55.0% | |
| GTTCCCTGAGCACAAGTGCA+AGG | + | Chr2:19384911-19384930 | None:intergenic | 55.0% | |
| TATGCAGCACCTCCACAGCT+TGG | - | Chr2:19386160-19386179 | MsG0280007698.01.T01:five_prime_UTR | 55.0% | |
| !!! | CGTTTTTGGGGCCAGGGAAT+AGG | + | Chr2:19385983-19386002 | None:intergenic | 55.0% |
| AGCACCTCCACAGCTTGGCA+CGG | - | Chr2:19386165-19386184 | MsG0280007698.01.T01:five_prime_UTR | 60.0% | |
| TGTGTGCTGCATGGGCCCTT+TGG | - | Chr2:19384827-19384846 | MsG0280007698.01.T01:intron | 60.0% | |
| CACCTCCACAGCTTGGCACG+GGG | - | Chr2:19386167-19386186 | MsG0280007698.01.T01:five_prime_UTR | 65.0% | |
| GCACCTCCACAGCTTGGCAC+GGG | - | Chr2:19386166-19386185 | MsG0280007698.01.T01:five_prime_UTR | 65.0% | |
| GCTTGGCACGGGGCATGCTA+TGG | - | Chr2:19386177-19386196 | MsG0280007698.01.T01:five_prime_UTR | 65.0% | |
| GCATGCCCCGTGCCAAGCTG+TGG | + | Chr2:19386175-19386194 | None:intergenic | 70.0% | |
| TGCCCCGTGCCAAGCTGTGG+AGG | + | Chr2:19386172-19386191 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 19383780 | 19386204 | 19383780 | ID=MsG0280007698.01;Name=MsG0280007698.01 |
| Chr2 | mRNA | 19383780 | 19386204 | 19383780 | ID=MsG0280007698.01.T01;Parent=MsG0280007698.01;Name=MsG0280007698.01.T01;_AED=0.48;_eAED=0.51;_QI=161|0.5|0.66|1|0|0|3|0|65 |
| Chr2 | exon | 19383780 | 19383949 | 19383780 | ID=MsG0280007698.01.T01:exon:4536;Parent=MsG0280007698.01.T01 |
| Chr2 | exon | 19384603 | 19384662 | 19384603 | ID=MsG0280007698.01.T01:exon:4535;Parent=MsG0280007698.01.T01 |
| Chr2 | exon | 19386076 | 19386204 | 19386076 | ID=MsG0280007698.01.T01:exon:4534;Parent=MsG0280007698.01.T01 |
| Chr2 | five_prime_UTR | 19386076 | 19386204 | 19386076 | ID=MsG0280007698.01.T01:five_prime_utr;Parent=MsG0280007698.01.T01 |
| Chr2 | five_prime_UTR | 19384631 | 19384662 | 19384631 | ID=MsG0280007698.01.T01:five_prime_utr;Parent=MsG0280007698.01.T01 |
| Chr2 | CDS | 19384603 | 19384630 | 19384603 | ID=MsG0280007698.01.T01:cds;Parent=MsG0280007698.01.T01 |
| Chr2 | CDS | 19383780 | 19383949 | 19383780 | ID=MsG0280007698.01.T01:cds;Parent=MsG0280007698.01.T01 |
| Gene Sequence |
| Protein sequence |
