Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042436.01.T01 | XP_003627207.1 | 98.352 | 182 | 3 | 0 | 1 | 182 | 1 | 182 | 2.11E-125 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042436.01.T01 | Q38820 | 70.968 | 186 | 49 | 2 | 2 | 182 | 3 | 188 | 1.44E-80 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042436.01.T01 | G7LJ02 | 98.352 | 182 | 3 | 0 | 1 | 182 | 1 | 182 | 1.01e-125 | 360 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000546.01 | MsG0880042436.01 | 0.803654 | 3.143706e-49 | 1.588546e-46 |
| MsG0180000669.01 | MsG0880042436.01 | 0.813736 | 2.200489e-51 | 1.448703e-48 |
| MsG0180000679.01 | MsG0880042436.01 | 0.806156 | 9.432964e-50 | 5.083378e-47 |
| MsG0180002489.01 | MsG0880042436.01 | 0.802846 | 4.621992e-49 | 2.287833e-46 |
| MsG0180002491.01 | MsG0880042436.01 | 0.804196 | 2.426007e-49 | 1.243067e-46 |
| MsG0180003952.01 | MsG0880042436.01 | 0.805008 | 1.642121e-49 | 8.592175e-47 |
| MsG0180004130.01 | MsG0880042436.01 | 0.812393 | 4.337549e-51 | 2.754661e-48 |
| MsG0180006220.01 | MsG0880042436.01 | 0.821249 | 4.463880e-53 | 3.612447e-50 |
| MsG0280006411.01 | MsG0880042436.01 | 0.820971 | 5.174158e-53 | 4.155495e-50 |
| MsG0880042436.01 | MsG0880043003.01 | 0.802319 | 5.936093e-49 | 2.899195e-46 |
| MsG0880042436.01 | MsG0880043082.01 | 0.824123 | 9.571060e-54 | 8.401698e-51 |
| MsG0880042436.01 | MsG0880046058.01 | 0.813092 | 3.048217e-51 | 1.971845e-48 |
| MsG0880042436.01 | MsG0880046321.01 | 0.802433 | 5.623995e-49 | 2.754628e-46 |
| MsG0880042436.01 | MsG0880046377.01 | 0.803699 | 3.077808e-49 | 1.557060e-46 |
| MsG0880042436.01 | MsG0880047116.01 | 0.815550 | 8.728841e-52 | 6.036614e-49 |
| MsG0880042436.01 | MsG0880047427.01 | 0.802159 | 6.403893e-49 | 3.114736e-46 |
| MsG0280010776.01 | MsG0880042436.01 | 0.824778 | 6.713051e-54 | 6.005127e-51 |
| MsG0680032430.01 | MsG0880042436.01 | 0.833890 | 4.111566e-56 | 4.799976e-53 |
| MsG0680035582.01 | MsG0880042436.01 | 0.818927 | 1.518437e-52 | 1.152183e-49 |
| MsG0480018906.01 | MsG0880042436.01 | 0.826977 | 2.016792e-54 | 1.921037e-51 |
| MsG0480021994.01 | MsG0880042436.01 | 0.834941 | 2.240311e-56 | 2.699011e-53 |
| MsG0480022035.01 | MsG0880042436.01 | 0.815320 | 9.822763e-52 | 6.750246e-49 |
| MsG0480022493.01 | MsG0880042436.01 | 0.817673 | 2.918296e-52 | 2.139033e-49 |
| MsG0580024084.01 | MsG0880042436.01 | 0.800595 | 1.338704e-48 | 6.258157e-46 |
| MsG0580025400.01 | MsG0880042436.01 | 0.816873 | 4.416902e-52 | 3.167428e-49 |
| MsG0380015027.01 | MsG0880042436.01 | 0.819060 | 1.415926e-52 | 1.078252e-49 |
| MsG0380015400.01 | MsG0880042436.01 | 0.801793 | 7.613504e-49 | 3.668750e-46 |
| MsG0380015818.01 | MsG0880042436.01 | 0.832730 | 7.999818e-56 | 9.019918e-53 |
| MsG0380017226.01 | MsG0880042436.01 | 0.814719 | 1.334728e-51 | 9.024333e-49 |
| MsG0580027034.01 | MsG0880042436.01 | 0.801644 | 8.168316e-49 | 3.921144e-46 |
| MsG0580028072.01 | MsG0880042436.01 | 0.817796 | 2.738944e-52 | 2.014338e-49 |
| MsG0580029717.01 | MsG0880042436.01 | 0.830122 | 3.507742e-55 | 3.662042e-52 |
| MsG0580029952.01 | MsG0880042436.01 | 0.808791 | 2.604124e-50 | 1.502688e-47 |
| MsG0680030415.01 | MsG0880042436.01 | 0.831691 | 1.445919e-55 | 1.580956e-52 |
| MsG0280006708.01 | MsG0880042436.01 | 0.805453 | 1.325121e-49 | 7.013444e-47 |
| MsG0280010013.01 | MsG0880042436.01 | 0.848326 | 6.584134e-60 | 1.203893e-56 |
| MsG0280010204.01 | MsG0880042436.01 | 0.803565 | 3.280855e-49 | 1.654208e-46 |
| MsG0280010205.01 | MsG0880042436.01 | 0.811804 | 5.827533e-51 | 3.642305e-48 |
| MsG0780037082.01 | MsG0880042436.01 | 0.838189 | 3.334547e-57 | 4.432038e-54 |
| MsG0780038911.01 | MsG0880042436.01 | 0.823294 | 1.496352e-53 | 1.283167e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042436.01.T01 | MTR_8g018780 | 98.352 | 182 | 3 | 0 | 1 | 182 | 1 | 182 | 2.55e-129 | 360 |
| MsG0880042436.01.T01 | MTR_2g099550 | 75.706 | 177 | 43 | 0 | 6 | 182 | 12 | 188 | 1.59e-77 | 229 |
| MsG0880042436.01.T01 | MTR_1g081230 | 55.676 | 185 | 79 | 3 | 1 | 182 | 1 | 185 | 1.92e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042436.01.T01 | AT1G72750 | 70.968 | 186 | 49 | 2 | 2 | 182 | 3 | 188 | 1.46e-81 | 240 |
| MsG0880042436.01.T01 | AT1G17530 | 67.213 | 183 | 56 | 2 | 2 | 182 | 7 | 187 | 3.79e-78 | 231 |
| MsG0880042436.01.T01 | AT1G17530 | 67.598 | 179 | 54 | 2 | 2 | 178 | 7 | 183 | 1.30e-76 | 227 |
| MsG0880042436.01.T01 | AT3G04800 | 54.237 | 177 | 80 | 1 | 7 | 182 | 12 | 188 | 4.03e-53 | 168 |
Find 74 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAACCGGGTTGGGATTAT+TGG | 0.206357 | 8:-8678483 | MsG0880042436.01.T01:CDS |
| TTGGGAGTTTGTAGAGGTTT+TGG | 0.238988 | 8:+8678724 | None:intergenic |
| CTGGACATTCGGGTCGGACT+TGG | 0.241871 | 8:-8678506 | MsG0880042436.01.T01:CDS |
| GTGGCGGCAGGGCTTGCGAC+TGG | 0.268063 | 8:-8678393 | MsG0880042436.01.T01:CDS |
| TTTGAATGCGTCTGGACATT+CGG | 0.314203 | 8:-8678517 | MsG0880042436.01.T01:CDS |
| GCTGTTGGTGGGGTTGTTGT+TGG | 0.333786 | 8:-8678321 | MsG0880042436.01.T01:CDS |
| GGAACCGGGTTGGGATTATT+GGG | 0.335103 | 8:-8678482 | MsG0880042436.01.T01:CDS |
| TTGAATGCGTCTGGACATTC+GGG | 0.335254 | 8:-8678516 | MsG0880042436.01.T01:CDS |
| CCAAACGTAAACGCCGTTCT+TGG | 0.336189 | 8:-8678671 | MsG0880042436.01.T01:CDS |
| TGGACATTCGGGTCGGACTT+GGG | 0.342678 | 8:-8678505 | MsG0880042436.01.T01:CDS |
| CCAAGAACGGCGTTTACGTT+TGG | 0.359864 | 8:+8678671 | None:intergenic |
| TGGCGGCAGGGCTTGCGACT+GGG | 0.360637 | 8:-8678392 | MsG0880042436.01.T01:CDS |
| CTTTGTATGGGTTGTAGAAT+CGG | 0.367000 | 8:+8678763 | None:intergenic |
| GTGAGATCGGCTGCAGTTGC+TGG | 0.372108 | 8:-8678345 | MsG0880042436.01.T01:CDS |
| CAGTTGCTGGTGCTGTTGGT+GGG | 0.374620 | 8:-8678332 | MsG0880042436.01.T01:CDS |
| GCAGTTGCTGGTGCTGTTGG+TGG | 0.383273 | 8:-8678333 | MsG0880042436.01.T01:CDS |
| CTCACCCTCACACTTCAAAT+AGG | 0.389316 | 8:+8678258 | None:intergenic |
| CAAACGTAAACGCCGTTCTT+GGG | 0.395053 | 8:-8678670 | MsG0880042436.01.T01:CDS |
| ATTATTGGGTTGTTGTATGC+TGG | 0.396327 | 8:-8678468 | MsG0880042436.01.T01:CDS |
| CAACCGACACTGCGAAGCTT+AGG | 0.410403 | 8:-8678551 | MsG0880042436.01.T01:CDS |
| GGACATTCGGGTCGGACTTG+GGG | 0.423980 | 8:-8678504 | MsG0880042436.01.T01:CDS |
| CGCAGTGTCGGTTGATTCAA+AGG | 0.434906 | 8:+8678560 | None:intergenic |
| GGAACTTCGAGGTCTTTGTA+TGG | 0.447847 | 8:+8678750 | None:intergenic |
| GGTGGTTCAATCGCCGGTGC+CGG | 0.452433 | 8:-8678609 | MsG0880042436.01.T01:CDS |
| GCTGCAGTTGCTGGTGCTGT+TGG | 0.455549 | 8:-8678336 | MsG0880042436.01.T01:CDS |
| ACCACCGAGGTAACCGCAAC+CGG | 0.465973 | 8:+8678626 | None:intergenic |
| AGCTGCTGTGGCTGCGAAGA+GGG | 0.467196 | 8:-8678298 | MsG0880042436.01.T01:CDS |
| AAGAGATACTCCGGTGAGGT+TGG | 0.473161 | 8:+8678705 | None:intergenic |
| TTTGTATGGGTTGTAGAATC+GGG | 0.474283 | 8:+8678764 | None:intergenic |
| AGAGATACTCCGGTGAGGTT+GGG | 0.474381 | 8:+8678706 | None:intergenic |
| TACCTCGGTGGTTCAATCGC+CGG | 0.491792 | 8:-8678615 | MsG0880042436.01.T01:CDS |
| CTGCGAAGCTTAGGGTGAAT+CGG | 0.491985 | 8:-8678542 | MsG0880042436.01.T01:CDS |
| CGGTTTATCGAGCTGCGAGA+GGG | 0.492635 | 8:-8678368 | MsG0880042436.01.T01:CDS |
| GCCGGAGTCGGACTCGTTGA+AGG | 0.494032 | 8:-8678591 | MsG0880042436.01.T01:CDS |
| GGGTTGTAGAATCGGGTTTG+AGG | 0.496826 | 8:+8678771 | None:intergenic |
| TCAATCGCCGGTGCCGGAGT+CGG | 0.501515 | 8:-8678603 | MsG0880042436.01.T01:CDS |
| AGTTGCTGGTGCTGTTGGTG+GGG | 0.504206 | 8:-8678331 | MsG0880042436.01.T01:CDS |
| AACGAGTCCGACTCCGGCAC+CGG | 0.506992 | 8:+8678596 | None:intergenic |
| GAACTTCGAGGTCTTTGTAT+GGG | 0.509711 | 8:+8678751 | None:intergenic |
| AACCGACACTGCGAAGCTTA+GGG | 0.515795 | 8:-8678550 | MsG0880042436.01.T01:CDS |
| CACCCTAAGCTTCGCAGTGT+CGG | 0.516235 | 8:+8678548 | None:intergenic |
| TGAGGGATGTTGATGATGCT+TGG | 0.516589 | 8:-8678422 | MsG0880042436.01.T01:CDS |
| GGTTGTTGTTGGAGCTGCTG+TGG | 0.524367 | 8:-8678310 | MsG0880042436.01.T01:CDS |
| TAAGATTCTCGCCCCAAGAA+CGG | 0.528444 | 8:+8678658 | None:intergenic |
| AGCTGCGAGAGGGGTGAGAT+CGG | 0.529491 | 8:-8678358 | MsG0880042436.01.T01:CDS |
| GGCGGCAGGGCTTGCGACTG+GGG | 0.534649 | 8:-8678391 | MsG0880042436.01.T01:CDS |
| GCTTGGAATAGTGTGGCGGC+AGG | 0.535474 | 8:-8678405 | MsG0880042436.01.T01:CDS |
| TACACCGGTTGCGGTTACCT+CGG | 0.537617 | 8:-8678630 | MsG0880042436.01.T01:CDS |
| GGCAGGGCTTGCGACTGGGG+CGG | 0.541437 | 8:-8678388 | MsG0880042436.01.T01:CDS |
| GAGCTGCTGTGGCTGCGAAG+AGG | 0.542881 | 8:-8678299 | MsG0880042436.01.T01:CDS |
| GACATTCGGGTCGGACTTGG+GGG | 0.553800 | 8:-8678503 | MsG0880042436.01.T01:CDS |
| ACCTTCAACGAGTCCGACTC+CGG | 0.555318 | 8:+8678590 | None:intergenic |
| TGCTGTGGCTGCGAAGAGGG+TGG | 0.556825 | 8:-8678295 | MsG0880042436.01.T01:CDS |
| TTGTATGCTGGAATTGAGAG+TGG | 0.564300 | 8:-8678456 | MsG0880042436.01.T01:CDS |
| GTGAGGTTGGGAGTTTGTAG+AGG | 0.573117 | 8:+8678718 | None:intergenic |
| TCGGGTTTGAGGATCTTGAT+CGG | 0.578030 | 8:+8678782 | None:intergenic |
| GAGTGGGATTGAGGCTGTGA+GGG | 0.578683 | 8:-8678439 | MsG0880042436.01.T01:CDS |
| GCGGTTTATCGAGCTGCGAG+AGG | 0.585312 | 8:-8678369 | MsG0880042436.01.T01:CDS |
| AAACGTAAACGCCGTTCTTG+GGG | 0.585932 | 8:-8678669 | MsG0880042436.01.T01:CDS |
| CTACAAACTCCCAACCTCAC+CGG | 0.586121 | 8:-8678715 | MsG0880042436.01.T01:CDS |
| CTTGGAATAGTGTGGCGGCA+GGG | 0.601724 | 8:-8678404 | MsG0880042436.01.T01:CDS |
| TGGAATTGAGAGTGGGATTG+AGG | 0.602728 | 8:-8678448 | MsG0880042436.01.T01:CDS |
| TGTATGCTGGAATTGAGAGT+GGG | 0.606585 | 8:-8678455 | MsG0880042436.01.T01:CDS |
| ACCGGTTGCGGTTACCTCGG+TGG | 0.616170 | 8:-8678627 | MsG0880042436.01.T01:CDS |
| TGTCGGTTGATTCAAAGGAT+CGG | 0.630967 | 8:+8678565 | None:intergenic |
| GGTTTATCGAGCTGCGAGAG+GGG | 0.643337 | 8:-8678367 | MsG0880042436.01.T01:CDS |
| ATGCGTCTGGACATTCGGGT+CGG | 0.644981 | 8:-8678512 | MsG0880042436.01.T01:CDS |
| TCTTCGTCGAAGAGATACTC+CGG | 0.653572 | 8:+8678696 | None:intergenic |
| AGAGTGGGATTGAGGCTGTG+AGG | 0.684010 | 8:-8678440 | MsG0880042436.01.T01:CDS |
| ACAACCCAATAATCCCAACC+CGG | 0.701053 | 8:+8678478 | None:intergenic |
| TGATGATGCTTGGAATAGTG+TGG | 0.705715 | 8:-8678412 | MsG0880042436.01.T01:CDS |
| GTCGAAGAGATACTCCGGTG+AGG | 0.727648 | 8:+8678701 | None:intergenic |
| TGATGCTTGGAATAGTGTGG+CGG | 0.746290 | 8:-8678409 | MsG0880042436.01.T01:CDS |
| CACCGGCGATTGAACCACCG+AGG | 0.760521 | 8:+8678613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGAATCTTACTTTTTACAC+CGG | - | Chr8:8678425-8678444 | MsG0880042436.01.T01:CDS | 30.0% |
| ! | ATTATTGGGTTGTTGTATGC+TGG | - | Chr8:8678602-8678621 | MsG0880042436.01.T01:CDS | 35.0% |
| ! | CTTTGTATGGGTTGTAGAAT+CGG | + | Chr8:8678310-8678329 | None:intergenic | 35.0% |
| ! | TTTGTATGGGTTGTAGAATC+GGG | + | Chr8:8678309-8678328 | None:intergenic | 35.0% |
| !!! | AGTTTGTAGAGGTTTTGGAT+TGG | + | Chr8:8678344-8678363 | None:intergenic | 35.0% |
| GAACTTCGAGGTCTTTGTAT+GGG | + | Chr8:8678322-8678341 | None:intergenic | 40.0% | |
| TGTATGCTGGAATTGAGAGT+GGG | - | Chr8:8678615-8678634 | MsG0880042436.01.T01:CDS | 40.0% | |
| TTGTATGCTGGAATTGAGAG+TGG | - | Chr8:8678614-8678633 | MsG0880042436.01.T01:CDS | 40.0% | |
| TTTGAATGCGTCTGGACATT+CGG | - | Chr8:8678553-8678572 | MsG0880042436.01.T01:CDS | 40.0% | |
| ! | AATCGGATTTTGAATGCGTC+TGG | - | Chr8:8678545-8678564 | MsG0880042436.01.T01:CDS | 40.0% |
| ! | TGATGATGCTTGGAATAGTG+TGG | - | Chr8:8678658-8678677 | MsG0880042436.01.T01:CDS | 40.0% |
| ! | TGTCGGTTGATTCAAAGGAT+CGG | + | Chr8:8678508-8678527 | None:intergenic | 40.0% |
| ! | TTGGGAGTTTGTAGAGGTTT+TGG | + | Chr8:8678349-8678368 | None:intergenic | 40.0% |
| !!! | CTTACTTTTTACACCGGTTG+CGG | - | Chr8:8678431-8678450 | MsG0880042436.01.T01:CDS | 40.0% |
| AAACGTAAACGCCGTTCTTG+GGG | - | Chr8:8678401-8678420 | MsG0880042436.01.T01:CDS | 45.0% | |
| ACAACCCAATAATCCCAACC+CGG | + | Chr8:8678595-8678614 | None:intergenic | 45.0% | |
| CAAACGTAAACGCCGTTCTT+GGG | - | Chr8:8678400-8678419 | MsG0880042436.01.T01:CDS | 45.0% | |
| GGAACTTCGAGGTCTTTGTA+TGG | + | Chr8:8678323-8678342 | None:intergenic | 45.0% | |
| TAAGATTCTCGCCCCAAGAA+CGG | + | Chr8:8678415-8678434 | None:intergenic | 45.0% | |
| TCGGGTTTGAGGATCTTGAT+CGG | + | Chr8:8678291-8678310 | None:intergenic | 45.0% | |
| TCTTCGTCGAAGAGATACTC+CGG | + | Chr8:8678377-8678396 | None:intergenic | 45.0% | |
| TGATGCTTGGAATAGTGTGG+CGG | - | Chr8:8678661-8678680 | MsG0880042436.01.T01:CDS | 45.0% | |
| TGGAATTGAGAGTGGGATTG+AGG | - | Chr8:8678622-8678641 | MsG0880042436.01.T01:CDS | 45.0% | |
| TTGAATGCGTCTGGACATTC+GGG | - | Chr8:8678554-8678573 | MsG0880042436.01.T01:CDS | 45.0% | |
| !! | TGAGGGATGTTGATGATGCT+TGG | - | Chr8:8678648-8678667 | MsG0880042436.01.T01:CDS | 45.0% |
| !!! | GGTTTTGGATTGGAACTTCG+AGG | + | Chr8:8678334-8678353 | None:intergenic | 45.0% |
| AACCGACACTGCGAAGCTTA+GGG | - | Chr8:8678520-8678539 | MsG0880042436.01.T01:CDS | 50.0% | |
| AAGAGATACTCCGGTGAGGT+TGG | + | Chr8:8678368-8678387 | None:intergenic | 50.0% | |
| AGAGATACTCCGGTGAGGTT+GGG | + | Chr8:8678367-8678386 | None:intergenic | 50.0% | |
| CCAAACGTAAACGCCGTTCT+TGG | - | Chr8:8678399-8678418 | MsG0880042436.01.T01:CDS | 50.0% | |
| CCAAGAACGGCGTTTACGTT+TGG | + | Chr8:8678402-8678421 | None:intergenic | 50.0% | |
| CTACAAACTCCCAACCTCAC+CGG | - | Chr8:8678355-8678374 | MsG0880042436.01.T01:CDS | 50.0% | |
| CTGCGAAGCTTAGGGTGAAT+CGG | - | Chr8:8678528-8678547 | MsG0880042436.01.T01:CDS | 50.0% | |
| GGGTTGTAGAATCGGGTTTG+AGG | + | Chr8:8678302-8678321 | None:intergenic | 50.0% | |
| GTGAGGTTGGGAGTTTGTAG+AGG | + | Chr8:8678355-8678374 | None:intergenic | 50.0% | |
| ! | GGAACCGGGTTGGGATTATT+GGG | - | Chr8:8678588-8678607 | MsG0880042436.01.T01:CDS | 50.0% |
| !! | CGCAGTGTCGGTTGATTCAA+AGG | + | Chr8:8678513-8678532 | None:intergenic | 50.0% |
| ACCTTCAACGAGTCCGACTC+CGG | + | Chr8:8678483-8678502 | None:intergenic | 55.0% | |
| AGAGTGGGATTGAGGCTGTG+AGG | - | Chr8:8678630-8678649 | MsG0880042436.01.T01:CDS | 55.0% | |
| ATGCGTCTGGACATTCGGGT+CGG | - | Chr8:8678558-8678577 | MsG0880042436.01.T01:CDS | 55.0% | |
| CAACCGACACTGCGAAGCTT+AGG | - | Chr8:8678519-8678538 | MsG0880042436.01.T01:CDS | 55.0% | |
| CACCCTAAGCTTCGCAGTGT+CGG | + | Chr8:8678525-8678544 | None:intergenic | 55.0% | |
| CGGTTTATCGAGCTGCGAGA+GGG | - | Chr8:8678702-8678721 | MsG0880042436.01.T01:CDS | 55.0% | |
| CTTGGAATAGTGTGGCGGCA+GGG | - | Chr8:8678666-8678685 | MsG0880042436.01.T01:CDS | 55.0% | |
| GAGTGGGATTGAGGCTGTGA+GGG | - | Chr8:8678631-8678650 | MsG0880042436.01.T01:CDS | 55.0% | |
| GGTTTATCGAGCTGCGAGAG+GGG | - | Chr8:8678703-8678722 | MsG0880042436.01.T01:CDS | 55.0% | |
| GTCGAAGAGATACTCCGGTG+AGG | + | Chr8:8678372-8678391 | None:intergenic | 55.0% | |
| TACCTCGGTGGTTCAATCGC+CGG | - | Chr8:8678455-8678474 | MsG0880042436.01.T01:CDS | 55.0% | |
| TGGACATTCGGGTCGGACTT+GGG | - | Chr8:8678565-8678584 | MsG0880042436.01.T01:CDS | 55.0% | |
| ! | GCTGTTGGTGGGGTTGTTGT+TGG | - | Chr8:8678749-8678768 | MsG0880042436.01.T01:CDS | 55.0% |
| ! | GGGAACCGGGTTGGGATTAT+TGG | - | Chr8:8678587-8678606 | MsG0880042436.01.T01:CDS | 55.0% |
| ! | GGTTGTTGTTGGAGCTGCTG+TGG | - | Chr8:8678760-8678779 | MsG0880042436.01.T01:CDS | 55.0% |
| ! | TACACCGGTTGCGGTTACCT+CGG | - | Chr8:8678440-8678459 | MsG0880042436.01.T01:CDS | 55.0% |
| !! | AGTTGCTGGTGCTGTTGGTG+GGG | - | Chr8:8678739-8678758 | MsG0880042436.01.T01:CDS | 55.0% |
| !! | CAGTTGCTGGTGCTGTTGGT+GGG | - | Chr8:8678738-8678757 | MsG0880042436.01.T01:CDS | 55.0% |
| ACCACCGAGGTAACCGCAAC+CGG | + | Chr8:8678447-8678466 | None:intergenic | 60.0% | |
| AGCTGCGAGAGGGGTGAGAT+CGG | - | Chr8:8678712-8678731 | MsG0880042436.01.T01:CDS | 60.0% | |
| AGCTGCTGTGGCTGCGAAGA+GGG | - | Chr8:8678772-8678791 | MsG0880042436.01.T01:CDS | 60.0% | |
| CTGGACATTCGGGTCGGACT+TGG | - | Chr8:8678564-8678583 | MsG0880042436.01.T01:CDS | 60.0% | |
| GACATTCGGGTCGGACTTGG+GGG | - | Chr8:8678567-8678586 | MsG0880042436.01.T01:CDS | 60.0% | |
| GCGGTTTATCGAGCTGCGAG+AGG | - | Chr8:8678701-8678720 | MsG0880042436.01.T01:CDS | 60.0% | |
| GCTTGGAATAGTGTGGCGGC+AGG | - | Chr8:8678665-8678684 | MsG0880042436.01.T01:CDS | 60.0% | |
| GGACATTCGGGTCGGACTTG+GGG | - | Chr8:8678566-8678585 | MsG0880042436.01.T01:CDS | 60.0% | |
| GTGAGATCGGCTGCAGTTGC+TGG | - | Chr8:8678725-8678744 | MsG0880042436.01.T01:CDS | 60.0% | |
| !! | GCAGTTGCTGGTGCTGTTGG+TGG | - | Chr8:8678737-8678756 | MsG0880042436.01.T01:CDS | 60.0% |
| !! | GCTGCAGTTGCTGGTGCTGT+TGG | - | Chr8:8678734-8678753 | MsG0880042436.01.T01:CDS | 60.0% |
| AACGAGTCCGACTCCGGCAC+CGG | + | Chr8:8678477-8678496 | None:intergenic | 65.0% | |
| ACCGGTTGCGGTTACCTCGG+TGG | - | Chr8:8678443-8678462 | MsG0880042436.01.T01:CDS | 65.0% | |
| CACCGGCGATTGAACCACCG+AGG | + | Chr8:8678460-8678479 | None:intergenic | 65.0% | |
| GAGCTGCTGTGGCTGCGAAG+AGG | - | Chr8:8678771-8678790 | MsG0880042436.01.T01:CDS | 65.0% | |
| GCCGGAGTCGGACTCGTTGA+AGG | - | Chr8:8678479-8678498 | MsG0880042436.01.T01:CDS | 65.0% | |
| GGACTTGGGGGAACCGGGTT+GGG | - | Chr8:8678579-8678598 | MsG0880042436.01.T01:CDS | 65.0% | |
| GGTGGTTCAATCGCCGGTGC+CGG | - | Chr8:8678461-8678480 | MsG0880042436.01.T01:CDS | 65.0% | |
| TGCTGTGGCTGCGAAGAGGG+TGG | - | Chr8:8678775-8678794 | MsG0880042436.01.T01:CDS | 65.0% | |
| ! | TCAATCGCCGGTGCCGGAGT+CGG | - | Chr8:8678467-8678486 | MsG0880042436.01.T01:CDS | 65.0% |
| CGGACTTGGGGGAACCGGGT+TGG | - | Chr8:8678578-8678597 | MsG0880042436.01.T01:CDS | 70.0% | |
| CGGGTCGGACTTGGGGGAAC+CGG | - | Chr8:8678573-8678592 | MsG0880042436.01.T01:CDS | 70.0% | |
| GGGTCGGACTTGGGGGAACC+GGG | - | Chr8:8678574-8678593 | MsG0880042436.01.T01:CDS | 70.0% | |
| TGGCGGCAGGGCTTGCGACT+GGG | - | Chr8:8678678-8678697 | MsG0880042436.01.T01:CDS | 70.0% | |
| GGCAGGGCTTGCGACTGGGG+CGG | - | Chr8:8678682-8678701 | MsG0880042436.01.T01:CDS | 75.0% | |
| GGCGGCAGGGCTTGCGACTG+GGG | - | Chr8:8678679-8678698 | MsG0880042436.01.T01:CDS | 75.0% | |
| GTGGCGGCAGGGCTTGCGAC+TGG | - | Chr8:8678677-8678696 | MsG0880042436.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 8678272 | 8678820 | 8678272 | ID=MsG0880042436.01;Name=MsG0880042436.01 |
| Chr8 | mRNA | 8678272 | 8678820 | 8678272 | ID=MsG0880042436.01.T01;Parent=MsG0880042436.01;Name=MsG0880042436.01.T01;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|182 |
| Chr8 | exon | 8678272 | 8678820 | 8678272 | ID=MsG0880042436.01.T01:exon:4052;Parent=MsG0880042436.01.T01 |
| Chr8 | CDS | 8678272 | 8678820 | 8678272 | ID=MsG0880042436.01.T01:cds;Parent=MsG0880042436.01.T01 |
| Gene Sequence |
| Protein sequence |
