AlfalfaGEDB | MsG0380015400.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015400.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015400.01.T02	XP_003600815.1	100	52	0	0	1	52	411	462	1.54E-25	107
MsG0380015400.01.T01	XP_024635465.1	98.947	95	1	0	1	95	290	384	1.61E-57	191

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015400.01.T01	Q9C768	54.023	87	40	0	1	87	361	447	7.74E-28	107

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015400.01.T01	G7JAK2	98.947	95	1	0	1	95	368	462	2.60e-57	192
MsG0380015400.01.T02	G7JAK2	100.000	52	0	0	1	52	411	462	7.37e-26	107

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048197.01	MsG0380015400.01	0.814713	1.339300e-51	9.053505e-49
MsG0180000152.01	MsG0380015400.01	0.800430	1.446585e-48	6.734512e-46
MsG0180000614.01	MsG0380015400.01	0.811421	7.062280e-51	4.369627e-48
MsG0180000732.01	MsG0380015400.01	0.803732	3.029808e-49	1.534095e-46
MsG0180001043.01	MsG0380015400.01	0.806321	8.707705e-50	4.712169e-47
MsG0180001522.01	MsG0380015400.01	0.815498	8.963713e-52	6.190631e-49
MsG0180001795.01	MsG0380015400.01	0.831970	1.233991e-55	1.360442e-52
MsG0180002140.01	MsG0380015400.01	0.800468	1.421111e-48	6.621883e-46
MsG0180002489.01	MsG0380015400.01	0.838752	2.385499e-57	3.225772e-54
MsG0180002491.01	MsG0380015400.01	0.842865	1.991732e-58	3.060241e-55
MsG0180003088.01	MsG0380015400.01	0.860847	1.552885e-63	4.304704e-60
MsG0180003124.01	MsG0380015400.01	0.836326	9.989683e-57	1.254876e-53
MsG0180003128.01	MsG0380015400.01	0.810505	1.114964e-50	6.732790e-48
MsG0180003257.01	MsG0380015400.01	0.800521	1.386289e-48	6.468460e-46
MsG0180005371.01	MsG0380015400.01	0.804954	1.685632e-49	8.808132e-47
MsG0180005676.01	MsG0380015400.01	-0.804871	1.754330e-49	9.148006e-47
MsG0180006016.01	MsG0380015400.01	0.801827	7.494233e-49	3.614374e-46
MsG0180006069.01	MsG0380015400.01	0.807709	4.428025e-50	2.483740e-47
MsG0180006220.01	MsG0380015400.01	0.807711	4.423932e-50	2.481574e-47
MsG0280006411.01	MsG0380015400.01	0.872760	2.483241e-67	1.051469e-63
MsG0280010943.01	MsG0380015400.01	0.817973	2.498105e-52	1.846022e-49
MsG0280011446.01	MsG0380015400.01	0.803105	4.085229e-49	2.035339e-46
MsG0380012661.01	MsG0380015400.01	-0.803580	3.257835e-49	1.643219e-46
MsG0380013541.01	MsG0380015400.01	0.807564	4.753242e-50	2.656058e-47
MsG0380014647.01	MsG0380015400.01	0.809122	2.211431e-50	1.287539e-47
MsG0380015027.01	MsG0380015400.01	0.808517	2.979648e-50	1.707212e-47
MsG0380015181.01	MsG0380015400.01	0.806591	7.637326e-50	4.161438e-47
MsG0380015400.01	MsG0380015404.01	0.918456	1.523780e-86	4.640954e-82
MsG0380015400.01	MsG0380015770.01	0.830544	2.766287e-55	2.923419e-52
MsG0380015400.01	MsG0380015822.01	0.818476	1.921810e-52	1.440127e-49
MsG0380015400.01	MsG0380017226.01	0.834275	3.293597e-56	3.889678e-53
MsG0380015400.01	MsG0380017286.01	0.808866	2.508888e-50	1.450697e-47
MsG0380015400.01	MsG0380018001.01	0.804011	2.650232e-49	1.351601e-46
MsG0380015400.01	MsG0480018213.01	0.812358	4.414392e-51	2.800799e-48
MsG0380015400.01	MsG0480018906.01	0.871723	5.500336e-67	2.241654e-63
MsG0380015400.01	MsG0480020065.01	0.805467	1.316600e-49	6.970715e-47
MsG0380015400.01	MsG0480020085.01	0.806769	7.001927e-50	3.832817e-47
MsG0380015400.01	MsG0480020090.01	0.816487	5.393149e-52	3.826396e-49
MsG0380015400.01	MsG0480020372.01	0.813694	2.248720e-51	1.478758e-48
MsG0380015400.01	MsG0480020445.01	0.814354	1.607914e-51	1.076444e-48
MsG0380015400.01	MsG0480021448.01	0.842997	1.836610e-58	2.833395e-55
MsG0380015400.01	MsG0480021453.01	0.807104	5.948070e-50	3.284197e-47
MsG0380015400.01	MsG0480021464.01	0.852754	3.750142e-61	7.916414e-58
MsG0380015400.01	MsG0480021994.01	0.802821	4.676878e-49	2.313587e-46
MsG0380015400.01	MsG0480022183.01	0.812655	3.800621e-51	2.430319e-48
MsG0380015400.01	MsG0480022768.01	0.835477	1.640110e-56	2.007971e-53
MsG0380015400.01	MsG0480023088.01	0.822499	2.293265e-53	1.922849e-50
MsG0380015400.01	MsG0580024051.01	0.810748	9.878932e-51	6.004475e-48
MsG0380015400.01	MsG0580024458.01	-0.808047	3.751835e-50	2.123195e-47
MsG0380015400.01	MsG0580025134.01	0.849225	3.707538e-60	6.981472e-57
MsG0380015400.01	MsG0580026047.01	0.826178	3.127978e-54	2.911897e-51
MsG0380015400.01	MsG0580026301.01	0.802513	5.414229e-49	2.657153e-46
MsG0380015400.01	MsG0580026777.01	0.803113	4.070973e-49	2.028639e-46
MsG0380015400.01	MsG0580027344.01	0.839173	1.856052e-57	2.542220e-54
MsG0380015400.01	MsG0580027345.01	0.804553	2.044331e-49	1.057167e-46
MsG0380015400.01	MsG0580028185.01	0.801130	1.041252e-48	4.934332e-46
MsG0380015400.01	MsG0680030415.01	0.809954	1.465617e-50	8.723439e-48
MsG0380015400.01	MsG0680030463.01	0.835594	1.531881e-56	1.881970e-53
MsG0380015400.01	MsG0680031694.01	0.804717	1.888912e-49	9.810139e-47
MsG0380015400.01	MsG0680032430.01	0.838768	2.363232e-57	3.197321e-54
MsG0380015400.01	MsG0680033391.01	0.807072	6.042320e-50	3.333516e-47
MsG0380015400.01	MsG0680033792.01	0.800696	1.276837e-48	5.984163e-46
MsG0380015400.01	MsG0680034061.01	0.807362	5.246917e-50	2.916597e-47
MsG0380015400.01	MsG0680034219.01	0.811865	5.651932e-51	3.538306e-48
MsG0380015400.01	MsG0680035582.01	0.818610	1.791493e-52	1.347319e-49
MsG0380015400.01	MsG0680035659.01	0.812071	5.098436e-51	3.209609e-48
MsG0380015400.01	MsG0780036550.01	0.801107	1.052385e-48	4.984290e-46
MsG0380015400.01	MsG0780037082.01	0.807782	4.271634e-50	2.400639e-47
MsG0380015400.01	MsG0780038231.01	0.804594	2.004501e-49	1.037675e-46
MsG0380015400.01	MsG0780038911.01	0.843686	1.202843e-58	1.896765e-55
MsG0380015400.01	MsG0780039452.01	0.824652	7.185712e-54	6.405095e-51
MsG0380015400.01	MsG0780039841.01	0.851813	6.950072e-61	1.423619e-57
MsG0380015400.01	MsG0780040442.01	0.804910	1.721654e-49	8.986598e-47
MsG0380015400.01	MsG0780040858.01	0.808836	2.546239e-50	1.471060e-47
MsG0380015400.01	MsG0780040861.01	0.818379	2.021353e-52	1.510739e-49
MsG0380015400.01	MsG0780040929.01	0.819785	9.678970e-53	7.521066e-50
MsG0380015400.01	MsG0780041294.01	0.807788	4.259414e-50	2.394154e-47
MsG0380015400.01	MsG0780041357.01	0.802953	4.391936e-49	2.179779e-46
MsG0380015400.01	MsG0880041969.01	0.817088	3.953499e-52	2.851617e-49
MsG0380015400.01	MsG0880042294.01	0.818197	2.222702e-52	1.652724e-49
MsG0380015400.01	MsG0880042436.01	0.801793	7.613504e-49	3.668750e-46
MsG0380015400.01	MsG0880042811.01	0.808577	2.892336e-50	1.659768e-47
MsG0380015400.01	MsG0880043082.01	0.826980	2.013401e-54	1.917946e-51
MsG0380015400.01	MsG0880043303.01	0.818968	1.485863e-52	1.128744e-49
MsG0380015400.01	MsG0880043456.01	0.829505	4.957237e-55	5.083401e-52
MsG0380015400.01	MsG0880043465.01	0.839067	1.977593e-57	2.700017e-54
MsG0380015400.01	MsG0880043498.01	0.807911	4.010827e-50	2.261528e-47
MsG0380015400.01	MsG0880045479.01	0.806215	9.167705e-50	4.947978e-47
MsG0380015400.01	MsG0880045631.01	0.829253	5.707582e-55	5.810693e-52
MsG0380015400.01	MsG0880045653.01	0.817878	2.623944e-52	1.934112e-49
MsG0380015400.01	MsG0880045951.01	0.809964	1.458765e-50	8.684916e-48
MsG0380015400.01	MsG0880046058.01	0.831693	1.444260e-55	1.579268e-52
MsG0380015400.01	MsG0880046088.01	0.846399	2.225859e-59	3.826508e-56
MsG0380015400.01	MsG0880046126.01	0.813243	2.824932e-51	1.834901e-48
MsG0380015400.01	MsG0880046209.01	0.800268	1.561116e-48	7.237678e-46
MsG0380015400.01	MsG0880046377.01	0.817090	3.949107e-52	2.848624e-49
MsG0380015400.01	MsG0880046733.01	0.810898	9.166873e-51	5.594269e-48
MsG0380015400.01	MsG0880047116.01	0.817581	3.062418e-52	2.238918e-49
MsG0380015400.01	MsG0880047191.01	0.818543	1.855841e-52	1.393225e-49
MsG0380015400.01	MsG0880047448.01	0.800907	1.156514e-48	5.449722e-46
MsG0380015400.01	MsG0880047607.01	0.817244	3.646214e-52	2.641263e-49
MsG0280006501.01	MsG0380015400.01	0.808621	2.830269e-50	1.625925e-47
MsG0280006595.01	MsG0380015400.01	0.815889	7.336790e-52	5.120932e-49
MsG0280006596.01	MsG0380015400.01	0.825170	5.423260e-54	4.906003e-51
MsG0280008286.01	MsG0380015400.01	0.806827	6.808139e-50	3.732389e-47
MsG0280008417.01	MsG0380015400.01	0.822440	2.366314e-53	1.980778e-50
MsG0280009109.01	MsG0380015400.01	0.823172	1.597934e-53	1.365583e-50
MsG0280009140.01	MsG0380015400.01	0.812123	4.967850e-51	3.131848e-48
MsG0280010204.01	MsG0380015400.01	0.828426	9.049180e-55	8.991744e-52
MsG0280010416.01	MsG0380015400.01	0.802429	5.633912e-49	2.759259e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015400.01.T02	MTR_3g069710	100.000	52	0	0	1	52	411	462	1.87e-29	107
MsG0380015400.01.T01	MTR_3g069710	98.947	95	1	0	1	95	368	462	6.59e-61	192
MsG0380015400.01.T01	MTR_3g069690	60.000	95	37	1	1	94	365	459	4.00e-31	114
MsG0380015400.01.T01	MTR_7g011470	43.529	85	48	0	1	85	382	466	5.30e-23	91.7
MsG0380015400.01.T01	MTR_7g011470	43.529	85	48	0	1	85	378	462	6.32e-23	91.3
MsG0380015400.01.T01	MTR_4g064987	46.067	89	46	1	1	89	368	454	2.73e-20	84.0
MsG0380015400.01.T01	MTR_4g064987	46.067	89	46	1	1	89	362	448	3.31e-20	83.6
MsG0380015400.01.T01	MTR_6g011340	41.176	85	50	0	1	85	396	480	3.96e-20	83.6
MsG0380015400.01.T01	MTR_6g014300	37.647	85	53	0	1	85	382	466	7.20e-20	82.8
MsG0380015400.01.T01	MTR_6g014270	36.264	91	58	0	1	91	395	485	9.05e-20	82.4
MsG0380015400.01.T01	MTR_6g013450	37.647	85	53	0	1	85	397	481	1.37e-19	82.0
MsG0380015400.01.T01	MTR_6g014310	37.647	85	53	0	1	85	397	481	2.23e-19	81.3
MsG0380015400.01.T01	MTR_6g014050	38.824	85	52	0	1	85	397	481	2.27e-19	81.3
MsG0380015400.01.T01	MTR_6g014040	41.176	85	50	0	1	85	397	481	2.44e-19	81.3
MsG0380015400.01.T01	MTR_8g007585	38.824	85	52	0	1	85	308	392	5.05e-19	80.1
MsG0380015400.01.T01	MTR_6g013920	36.471	85	54	0	1	85	395	479	5.88e-19	80.1
MsG0380015400.01.T01	MTR_6g014220	38.824	85	52	0	1	85	394	478	8.83e-19	79.7
MsG0380015400.01.T01	MTR_6g013900	36.471	85	54	0	1	85	395	479	1.12e-18	79.3
MsG0380015400.01.T01	MTR_6g014240	35.165	91	59	0	1	91	363	453	1.42e-18	79.0
MsG0380015400.01.T01	MTR_6g014187	36.471	85	54	0	1	85	396	480	1.61e-18	79.0
MsG0380015400.01.T01	MTR_0288s0020	36.471	85	54	0	1	85	377	461	1.81e-18	79.0
MsG0380015400.01.T01	MTR_5g058320	34.118	85	56	0	1	85	381	465	6.43e-18	77.4
MsG0380015400.01.T01	MTR_3g008010	36.471	85	54	0	1	85	394	478	7.25e-18	77.0
MsG0380015400.01.T01	MTR_6g014170	35.294	85	55	0	1	85	378	462	7.90e-18	77.0
MsG0380015400.01.T01	MTR_6g014020	35.294	85	55	0	1	85	396	480	1.01e-17	76.6
MsG0380015400.01.T01	MTR_6g014250	34.118	85	56	0	1	85	394	478	2.82e-17	75.5
MsG0380015400.01.T01	MTR_8g059425	34.066	91	60	0	1	91	394	484	2.96e-17	75.5
MsG0380015400.01.T01	MTR_6g014190	32.941	85	57	0	1	85	203	287	3.06e-17	74.3
MsG0380015400.01.T01	MTR_0477s0010	36.471	85	54	0	1	85	233	317	5.04e-17	74.3
MsG0380015400.01.T01	MTR_6g014200	34.118	85	56	0	1	85	393	477	2.82e-16	72.8
MsG0380015400.01.T01	MTR_6g014150	30.769	91	63	0	1	91	393	483	3.05e-16	72.4
MsG0380015400.01.T01	MTR_3g479490	35.714	84	54	0	2	85	391	474	3.11e-16	72.4
MsG0380015400.01.T01	MTR_6g013990	35.294	85	55	0	1	85	394	478	3.53e-16	72.4
MsG0380015400.01.T01	MTR_5g066390	36.471	85	54	0	1	85	131	215	3.82e-16	70.5
MsG0380015400.01.T01	MTR_6g013440	32.941	85	57	0	1	85	397	481	5.13e-16	72.0
MsG0380015400.01.T01	MTR_8g043470	31.868	91	62	0	1	91	294	384	6.49e-16	71.2
MsG0380015400.01.T01	MTR_6g013960	32.941	85	57	0	1	85	396	480	6.67e-16	71.6
MsG0380015400.01.T01	MTR_2086s0010	32.584	89	60	0	2	90	89	177	8.00e-16	68.9
MsG0380015400.01.T01	MTR_1996s0010	32.584	89	60	0	2	90	89	177	8.00e-16	68.9
MsG0380015400.01.T01	MTR_4g094220	39.506	81	49	0	1	81	395	475	1.24e-15	70.9
MsG0380015400.01.T01	MTR_6g014290	30.588	85	59	0	1	85	394	478	1.37e-15	70.5
MsG0380015400.01.T01	MTR_3g079480	34.524	84	55	0	2	85	406	489	8.19e-15	68.6
MsG0380015400.01.T01	MTR_6g014186	33.766	77	51	0	9	85	363	439	8.32e-15	68.6
MsG0380015400.01.T01	MTR_3g479520	32.955	88	59	0	2	89	400	487	1.70e-14	67.4
MsG0380015400.01.T01	MTR_2g008210	38.889	90	54	1	1	89	392	481	1.39e-13	65.1
MsG0380015400.01.T01	MTR_3g479610	32.955	88	59	0	2	89	230	317	2.30e-13	63.9
MsG0380015400.01.T01	MTR_5g031830	34.884	86	55	1	1	86	388	472	4.93e-13	63.5
MsG0380015400.01.T01	MTR_5g031860	34.884	86	55	1	1	86	387	471	6.35e-13	63.2
MsG0380015400.01.T01	MTR_7g080950	31.183	93	60	1	1	89	360	452	1.90e-12	61.6
MsG0380015400.01.T01	MTR_6g014185	31.818	88	59	1	1	87	260	347	2.31e-12	61.2
MsG0380015400.01.T01	MTR_8g083280	35.870	92	52	2	1	85	371	462	2.32e-12	61.6
MsG0380015400.01.T01	MTR_0891s0010	29.762	84	59	0	2	85	207	290	3.04e-12	60.8
MsG0380015400.01.T01	MTR_8g009055	44.156	77	39	1	1	73	379	455	4.63e-12	60.5
MsG0380015400.01.T01	MTR_8g008990	44.156	77	39	1	1	73	381	457	6.27e-12	60.1
MsG0380015400.01.T01	MTR_5g464760	34.091	88	56	2	1	87	396	482	6.79e-12	60.1
MsG0380015400.01.T01	MTR_0184s0030	45.455	77	38	1	1	73	380	456	7.69e-12	60.1
MsG0380015400.01.T01	MTR_8g064870	35.556	90	52	2	1	84	384	473	8.75e-12	59.7
MsG0380015400.01.T01	MTR_8g012630	41.558	77	41	1	1	73	328	404	9.02e-12	59.7
MsG0380015400.01.T01	MTR_8g009050	40.476	84	46	1	1	80	379	462	1.07e-11	59.7
MsG0380015400.01.T01	MTR_3g084530	40.000	90	47	3	1	84	384	472	1.10e-11	59.7
MsG0380015400.01.T01	MTR_6g013680	36.364	66	40	1	20	85	312	375	1.11e-11	59.3
MsG0380015400.01.T01	MTR_8g012635	44.156	77	39	1	1	73	384	460	1.32e-11	59.3
MsG0380015400.01.T01	MTR_0184s0040	39.080	87	49	1	1	83	393	479	1.38e-11	59.3
MsG0380015400.01.T01	MTR_0078s0190	39.080	87	49	1	1	83	393	479	1.38e-11	59.3
MsG0380015400.01.T01	MTR_1g107360	33.333	90	54	2	1	84	372	461	1.74e-11	58.9
MsG0380015400.01.T01	MTR_1g107375	35.227	88	53	2	1	84	366	453	1.77e-11	58.9
MsG0380015400.01.T01	MTR_6g014000	32.609	92	62	0	1	92	72	163	1.82e-11	58.9
MsG0380015400.01.T01	MTR_4g485620	36.458	96	52	1	1	87	362	457	2.55e-11	58.5
MsG0380015400.01.T01	MTR_3g049970	34.444	90	53	2	1	84	380	469	2.58e-11	58.5
MsG0380015400.01.T01	MTR_6g005600	41.935	93	50	1	1	89	380	472	2.81e-11	58.5
MsG0380015400.01.T01	MTR_1g107350	35.556	90	52	2	1	84	379	468	3.01e-11	58.2
MsG0380015400.01.T01	MTR_1g107365	34.091	88	54	2	1	84	404	491	3.94e-11	58.2
MsG0380015400.01.T01	MTR_4g485630	36.458	96	51	2	1	86	380	475	5.84e-11	57.4
MsG0380015400.01.T01	MTR_8g083290	39.130	92	45	4	1	81	373	464	5.94e-11	57.4
MsG0380015400.01.T01	MTR_5g067170	37.500	104	51	3	1	90	382	485	6.15e-11	57.4
MsG0380015400.01.T01	MTR_5g031840	31.395	86	58	1	1	86	379	463	6.30e-11	57.4
MsG0380015400.01.T01	MTR_8g012650	37.363	91	53	1	1	87	384	474	8.14e-11	57.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015400.01.T01	AT3G11340	54.023	87	40	0	1	87	361	447	7.89e-29	107
MsG0380015400.01.T01	AT3G55710	54.945	91	39	2	1	90	371	460	9.83e-26	99.0
MsG0380015400.01.T01	AT5G59580	47.619	84	44	0	1	84	364	447	2.70e-23	92.4
MsG0380015400.01.T01	AT3G55700	51.111	90	42	2	1	89	367	455	6.35e-23	91.3
MsG0380015400.01.T01	AT3G46660	45.977	87	47	0	1	87	372	458	1.88e-22	90.1
MsG0380015400.01.T01	AT5G05880	47.126	87	46	0	1	87	365	451	6.12e-22	88.6
MsG0380015400.01.T01	AT3G46720	50.617	81	40	0	1	81	357	437	7.00e-22	88.6
MsG0380015400.01.T01	AT5G05890	47.126	87	46	0	1	87	369	455	1.37e-21	87.4
MsG0380015400.01.T01	AT5G38010	48.148	81	42	0	1	81	370	450	1.80e-21	87.4
MsG0380015400.01.T01	AT5G05860	44.828	87	48	0	1	87	364	450	1.89e-21	87.0
MsG0380015400.01.T01	AT5G05870	46.429	84	45	0	1	84	371	454	2.76e-21	86.7
MsG0380015400.01.T01	AT5G59590	45.238	84	46	0	1	84	366	449	1.56e-20	84.7
MsG0380015400.01.T01	AT3G46670	41.379	87	51	0	1	87	365	451	6.22e-19	80.1
MsG0380015400.01.T01	AT5G38040	45.679	81	44	0	1	81	366	446	7.05e-19	80.1
MsG0380015400.01.T01	AT3G46700	42.857	84	48	0	1	84	361	444	1.65e-18	79.0
MsG0380015400.01.T01	AT3G46680	40.244	82	49	0	1	82	366	447	1.74e-18	79.0
MsG0380015400.01.T01	AT5G05900	46.429	84	45	0	1	84	364	447	4.19e-18	77.8
MsG0380015400.01.T01	AT3G46690	48.148	81	42	0	1	81	366	446	4.82e-18	77.8
MsG0380015400.01.T01	AT3G46650	40.230	87	52	0	1	87	349	435	4.87e-18	77.4
MsG0380015400.01.T01	AT2G26480	40.000	85	51	0	1	85	362	446	7.22e-17	74.3
MsG0380015400.01.T01	AT2G43820	39.560	91	50	1	1	86	358	448	4.19e-16	72.0
MsG0380015400.01.T01	AT2G43840	40.449	89	48	1	1	84	358	446	3.11e-15	69.7
MsG0380015400.01.T01	AT2G43840	40.449	89	48	1	1	84	358	446	3.36e-15	69.7
MsG0380015400.01.T01	AT1G22380	34.884	86	55	1	1	85	396	481	1.15e-14	68.2
MsG0380015400.01.T01	AT2G31790	40.698	86	47	1	1	82	369	454	3.35e-14	66.6
MsG0380015400.01.T01	AT1G05680	40.698	86	47	1	1	82	365	450	3.51e-13	63.9
MsG0380015400.01.T01	AT1G22400	37.500	88	50	2	1	85	397	482	3.94e-13	63.5
MsG0380015400.01.T01	AT1G22340	33.721	86	56	1	1	85	397	482	1.10e-12	62.4
MsG0380015400.01.T01	AT1G22360	34.483	87	54	2	1	85	393	478	1.95e-12	61.6
MsG0380015400.01.T01	AT1G05675	38.372	86	49	1	1	82	365	450	5.17e-12	60.5
MsG0380015400.01.T01	AT2G31750	36.264	91	52	2	1	85	365	455	8.02e-12	60.1
MsG0380015400.01.T01	AT2G31750	36.264	91	52	2	1	85	365	455	8.16e-12	60.1
MsG0380015400.01.T01	AT1G78270	32.184	87	58	1	1	86	396	482	9.09e-12	59.7
MsG0380015400.01.T01	AT3G21560	33.708	89	53	1	2	84	384	472	2.51e-11	58.5
MsG0380015400.01.T01	AT5G17030	31.818	88	59	1	1	87	371	458	2.85e-11	58.5
MsG0380015400.01.T01	AT4G15500	32.653	98	60	1	1	92	373	470	5.08e-11	57.8
MsG0380015400.01.T01	AT5G17040	30.682	88	60	1	1	87	355	442	9.98e-11	57.0

Find 18 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAAACATCACTTGCATATT+TGG	0.095849	3:-69638309	None:intergenic
CATATTTGGCATTGATCTTT+TGG	0.180248	3:-69638295	None:intergenic
ATGATCTGTATGCCATCTTT+TGG	0.313687	3:+69638269	MsG0380015400.01.T01:CDS
TTATAGTTTCCTTGATTCCT+TGG	0.318952	3:+69638487	MsG0380015400.01.T01:CDS
CCAAATATGCAAGTGATGTT+TGG	0.372187	3:+69638309	MsG0380015400.01.T01:CDS
GCAAGTGATGTTTGGAAGGT+TGG	0.413866	3:+69638317	MsG0380015400.01.T01:CDS
TGTCATGAATTTGAAAGAAA+AGG	0.454351	3:+69638433	MsG0380015400.01.T01:CDS
AAAGATGGCATACAGATCAT+TGG	0.460231	3:-69638266	None:intergenic
AAACTAATGGTCGGAGATGA+AGG	0.466586	3:+69638392	MsG0380015400.01.T01:CDS
GCTAATGTTTGCTTAAAAGA+AGG	0.475081	3:+69638455	MsG0380015400.01.T01:CDS
GAAGGTAATTCGAAAACTAA+TGG	0.488141	3:+69638379	MsG0380015400.01.T01:CDS
TTTCACTAACCAAGGAATCA+AGG	0.498847	3:-69638496	None:intergenic
TGAGAGAGGAGAGATTGAGA+AGG	0.538693	3:+69638361	MsG0380015400.01.T01:CDS
AATGTTTGCTTAAAAGAAGG+TGG	0.544714	3:+69638458	MsG0380015400.01.T01:CDS
CGACAATATTTCACTAACCA+AGG	0.578794	3:-69638504	None:intergenic
GTAATTCGAAAACTAATGGT+CGG	0.602992	3:+69638383	MsG0380015400.01.T01:CDS
ATATGCAAGTGATGTTTGGA+AGG	0.619759	3:+69638313	MsG0380015400.01.T01:CDS
TTAGAGAGTAAGCTTGAGAG+AGG	0.625741	3:+69638347	MsG0380015400.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TGTCATGAATTTGAAAGAAA+AGG	+	Chr3:69638433-69638452	MsG0380015400.01.T01:CDS	25.0%
	AATGTTTGCTTAAAAGAAGG+TGG	+	Chr3:69638458-69638477	MsG0380015400.01.T01:CDS	30.0%
	GAAGGTAATTCGAAAACTAA+TGG	+	Chr3:69638379-69638398	MsG0380015400.01.T01:CDS	30.0%
	GCTAATGTTTGCTTAAAAGA+AGG	+	Chr3:69638455-69638474	MsG0380015400.01.T01:CDS	30.0%
	GTAATTCGAAAACTAATGGT+CGG	+	Chr3:69638383-69638402	MsG0380015400.01.T01:CDS	30.0%
	TTATAGTTTCCTTGATTCCT+TGG	+	Chr3:69638487-69638506	MsG0380015400.01.T01:CDS	30.0%
!!!	CATATTTGGCATTGATCTTT+TGG	-	Chr3:69638298-69638317	None:intergenic	30.0%
	ATATGCAAGTGATGTTTGGA+AGG	+	Chr3:69638313-69638332	MsG0380015400.01.T01:CDS	35.0%
	CCAAACATCACTTGCATATT+TGG	-	Chr3:69638312-69638331	None:intergenic	35.0%
	CCAAATATGCAAGTGATGTT+TGG	+	Chr3:69638309-69638328	MsG0380015400.01.T01:CDS	35.0%
	CGACAATATTTCACTAACCA+AGG	-	Chr3:69638507-69638526	None:intergenic	35.0%
	TTTCACTAACCAAGGAATCA+AGG	-	Chr3:69638499-69638518	None:intergenic	35.0%
!	ATCTTTTGGTCTCCAAAAGA+TGG	-	Chr3:69638284-69638303	None:intergenic	35.0%
!	ATGATCTGTATGCCATCTTT+TGG	+	Chr3:69638269-69638288	MsG0380015400.01.T01:CDS	35.0%
	AAACTAATGGTCGGAGATGA+AGG	+	Chr3:69638392-69638411	MsG0380015400.01.T01:CDS	40.0%
	TTAGAGAGTAAGCTTGAGAG+AGG	+	Chr3:69638347-69638366	MsG0380015400.01.T01:CDS	40.0%
	GCAAGTGATGTTTGGAAGGT+TGG	+	Chr3:69638317-69638336	MsG0380015400.01.T01:CDS	45.0%
	TGAGAGAGGAGAGATTGAGA+AGG	+	Chr3:69638361-69638380	MsG0380015400.01.T01:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	69638269	69638556	69638269	ID=MsG0380015400.01;Name=MsG0380015400.01
Chr3	mRNA	69638269	69638556	69638269	ID=MsG0380015400.01.T01;Parent=MsG0380015400.01;Name=MsG0380015400.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|95
Chr3	exon	69638269	69638556	69638269	ID=MsG0380015400.01.T01:exon:9844;Parent=MsG0380015400.01.T01
Chr3	CDS	69638269	69638556	69638269	ID=MsG0380015400.01.T01:cds;Parent=MsG0380015400.01.T01
Chr3	mRNA	69638398	69638556	69638398	ID=MsG0380015400.01.T02;Parent=MsG0380015400.01;Name=MsG0380015400.01.T02;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|52
Chr3	exon	69638398	69638556	69638398	ID=MsG0380015400.01.T02:exon:9845;Parent=MsG0380015400.01.T02
Chr3	CDS	69638398	69638556	69638398	ID=MsG0380015400.01.T02:cds;Parent=MsG0380015400.01.T02

Gene Sequence

>MsG0380015400.01.T02

ATGGTCGGAGATGAAGGTAATGAGATTAGAGAGAATGTCATGAATTTGAAAGAAAAGGCTAATGTTTGCTTAAAAGAAGGTGGTTCTTCTTATAGTTTCCTTGATTCCTTGGTTAGTGAAATATTGTCGCTTAAATCTTCTACATCTAGAGCTCACTGA

>MsG0380015400.01.T01

ATGATCTGTATGCCATCTTTTGGAGACCAAAAGATCAATGCCAAATATGCAAGTGATGTTTGGAAGGTTGGAGTGCAATTAGAGAGTAAGCTTGAGAGAGGAGAGATTGAGAAGGTAATTCGAAAACTAATGGTCGGAGATGAAGGTAATGAGATTAGAGAGAATGTCATGAATTTGAAAGAAAAGGCTAATGTTTGCTTAAAAGAAGGTGGTTCTTCTTATAGTTTCCTTGATTCCTTGGTTAGTGAAATATTGTCGCTTAAATCTTCTACATCTAGAGCTCACTGA

Protein sequence

>MsG0380015400.01.T02

MVGDEGNEIRENVMNLKEKANVCLKEGGSSYSFLDSLVSEILSLKSSTSRAH*

>MsG0380015400.01.T01

MICMPSFGDQKINAKYASDVWKVGVQLESKLERGEIEKVIRKLMVGDEGNEIRENVMNLKEKANVCLKEGGSSYSFLDSLVSEILSLKSSTSRAH*