AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028072.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028072.01.T01 MTR_0512s0010 98.864 88 1 0 1 88 1 88 3.32e-59 176
MsG0580028072.01.T01 MTR_4g101060 79.452 73 15 0 1 73 1 73 1.01e-34 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028072.01.T01 AT3G52040 67.470 83 25 1 1 81 1 83 5.96e-34 112

Find 19 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGCTTTAAATATTATT+TGG 0.166439 5:+74158183 MsG0580028072.01.T01:exon
CAATCCTTTATCTTGCTTAA+TGG 0.215765 5:+74158308 MsG0580028072.01.T01:exon
TTATTTGGCTCGCTGTGATT+TGG 0.309082 5:+74158198 MsG0580028072.01.T01:exon
TATTTGGCTCGCTGTGATTT+GGG 0.334439 5:+74158199 MsG0580028072.01.T01:exon
AAGTGAAAAGGTTAAGTTGC+AGG 0.356455 5:+74158283 MsG0580028072.01.T01:exon
TCATATGAAAGGAAAGAAAT+AGG 0.373072 5:+74158222 MsG0580028072.01.T01:exon
ACAACCATTAAGCAAGATAA+AGG 0.387828 5:-74158312 None:intergenic
GTTGGATTGGTAAGTGTCTC+TGG 0.389033 5:+74158385 MsG0580028072.01.T01:exon
TCTTCAATCCTTAAGTGAAA+AGG 0.460583 5:+74158271 MsG0580028072.01.T01:exon
TTGGTTGATTGTAACTCTGT+TGG 0.466903 5:+74158367 MsG0580028072.01.T01:exon
TTTCACTTAAGGATTGAAGA+TGG 0.505491 5:-74158268 None:intergenic
TGATTGTAACTCTGTTGGAT+TGG 0.533405 5:+74158372 MsG0580028072.01.T01:exon
CTCTGGTAAATCTTATGCGG+AGG 0.568819 5:+74158402 MsG0580028072.01.T01:exon
TGTGATTTGGGTCATATGAA+AGG 0.592529 5:+74158211 MsG0580028072.01.T01:exon
TCTGGTAAATCTTATGCGGA+GGG 0.612074 5:+74158403 MsG0580028072.01.T01:exon
TTTGTAGTTAAGCGGTCTAG+GGG 0.622843 5:+74158141 MsG0580028072.01.T01:exon
TATGAAAGGAAAGAAATAGG+AGG 0.626874 5:+74158225 MsG0580028072.01.T01:exon
TGTCTCTGGTAAATCTTATG+CGG 0.648784 5:+74158399 MsG0580028072.01.T01:exon
TTGTAGTTAAGCGGTCTAGG+GGG 0.684899 5:+74158142 MsG0580028072.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACAAAAAAAAAATTAA+TGG - Chr5:74154100-74154119 None:intergenic 10.0%
!! AATTTATAAGTTCTATAATA+AGG + Chr5:74154415-74154434 MsG0580028072.01.T01:intron 10.0%
!! ATTTATAAGTTCTATAATAA+GGG + Chr5:74154416-74154435 MsG0580028072.01.T01:intron 10.0%
!!! ATAATTATCTAATTTGAAAT+TGG + Chr5:74154937-74154956 MsG0580028072.01.T01:intron 10.0%
!! AAAATGAAAACAAACAATAT+TGG + Chr5:74155869-74155888 MsG0580028072.01.T01:intron 15.0%
!! AACTTTATTCTCTTAAAATT+TGG - Chr5:74156082-74156101 None:intergenic 15.0%
!! AATACTAATTATAGAGAAAT+AGG + Chr5:74155140-74155159 MsG0580028072.01.T01:intron 15.0%
!! AATACTATTTCAAAATTAAC+AGG - Chr5:74154323-74154342 None:intergenic 15.0%
!! AGAATAAAGAGTTAATTTAA+TGG - Chr5:74155675-74155694 None:intergenic 15.0%
!! AGATAAATAGTTATGAAAAA+AGG + Chr5:74157566-74157585 MsG0580028072.01.T01:exon 15.0%
!!! TATCATAACATTTTAAATTG+TGG + Chr5:74155512-74155531 MsG0580028072.01.T01:intron 15.0%
!!! TTAATTTTCAGTTATGATTT+GGG + Chr5:74154289-74154308 MsG0580028072.01.T01:intron 15.0%
!!! TTGAATTTTTTTTAATCAAG+TGG - Chr5:74155386-74155405 None:intergenic 15.0%
!!! TTTAATTTTCAGTTATGATT+TGG + Chr5:74154288-74154307 MsG0580028072.01.T01:intron 15.0%
!!! TTTAGTTAGTATTTTTTGTA+TGG + Chr5:74156517-74156536 MsG0580028072.01.T01:intron 15.0%
!!! TTTATTCTCTTAAATTTTGT+TGG + Chr5:74155687-74155706 MsG0580028072.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTCTCTAAC+CGG + Chr5:74158074-74158093 MsG0580028072.01.T01:intron 15.0%
!! AAAAAAAAAACAAAGTCTTC+CGG - Chr5:74158064-74158083 None:intergenic 20.0%
!! AAATAGTTATGAAAAAAGGA+GGG + Chr5:74157570-74157589 MsG0580028072.01.T01:exon 20.0%
!! ACAACATTATATATTGTGAA+TGG + Chr5:74155978-74155997 MsG0580028072.01.T01:intron 20.0%
!! CAACATTATATATTGTGAAT+GGG + Chr5:74155979-74155998 MsG0580028072.01.T01:intron 20.0%
!! GATTAAAAAAAATTCAAGCA+AGG + Chr5:74155389-74155408 MsG0580028072.01.T01:intron 20.0%
!! TAAAGTAAAACAAGAAAGTA+TGG + Chr5:74154697-74154716 MsG0580028072.01.T01:intron 20.0%
!! TAAATAGTTATGAAAAAAGG+AGG + Chr5:74157569-74157588 MsG0580028072.01.T01:exon 20.0%
!! TAGTTTAAACAATGTTTACT+AGG + Chr5:74156952-74156971 MsG0580028072.01.T01:intron 20.0%
!! TATCTTATAGGACTTAATTA+GGG - Chr5:74154641-74154660 None:intergenic 20.0%
!! TTATCTTATAGGACTTAATT+AGG - Chr5:74154642-74154661 None:intergenic 20.0%
!!! AATTGTAAACTTTTCTTTAC+AGG + Chr5:74154149-74154168 MsG0580028072.01.T01:intron 20.0%
!!! ACCTATGATAATGTATATTA+TGG + Chr5:74155014-74155033 MsG0580028072.01.T01:intron 20.0%
!!! ACTCTATTGTTTTATTATCA+AGG - Chr5:74156282-74156301 None:intergenic 20.0%
!!! ATTGTAAACTTTTCTTTACA+GGG + Chr5:74154150-74154169 MsG0580028072.01.T01:intron 20.0%
!!! CATCTTTTAAACAATTTGAT+TGG - Chr5:74157835-74157854 None:intergenic 20.0%
!!! GAAAGGCTTTAAATATTATT+TGG + Chr5:74158183-74158202 MsG0580028072.01.T01:exon 20.0%
!!! TAAATTTTGTTGGATATACA+AGG + Chr5:74155697-74155716 MsG0580028072.01.T01:intron 20.0%
!!! TTAATGGTATGAACTTTTTA+AGG - Chr5:74155659-74155678 None:intergenic 20.0%
!!! TTTCATAAGGTTTTAAATCA+CGG - Chr5:74156210-74156229 None:intergenic 20.0%
! AAAATAGTTGTACAATGCTT+AGG - Chr5:74157175-74157194 None:intergenic 25.0%
! AAAGCTAAGAAATGTGTTTA+TGG + Chr5:74155470-74155489 MsG0580028072.01.T01:intron 25.0%
! ACAAGGACTACATAAAAATT+AGG - Chr5:74157246-74157265 None:intergenic 25.0%
! ACGAGTATACAAATTTCATA+AGG - Chr5:74156223-74156242 None:intergenic 25.0%
! AGAATAAAGTTTCAATCCAA+TGG + Chr5:74156091-74156110 MsG0580028072.01.T01:intron 25.0%
! CAAAATAAGCTTAATCCAAA+CGG - Chr5:74154365-74154384 None:intergenic 25.0%
! GAAAATTAGAGAAAAGCAAA+AGG - Chr5:74154234-74154253 None:intergenic 25.0%
! GAATATATATAGGAGAAGAT+GGG + Chr5:74157600-74157619 MsG0580028072.01.T01:exon 25.0%
! GATATCAAGATTTGACATAA+GGG + Chr5:74157977-74157996 MsG0580028072.01.T01:intron 25.0%
! GCCATAATATACATTATCAT+AGG - Chr5:74155018-74155037 None:intergenic 25.0%
! TAGAGATTGATGTGATTATT+TGG - Chr5:74157732-74157751 None:intergenic 25.0%
! TAGGTTCATTGAATAATATC+TGG + Chr5:74157114-74157133 MsG0580028072.01.T01:intron 25.0%
! TCATATGAAAGGAAAGAAAT+AGG + Chr5:74158222-74158241 MsG0580028072.01.T01:exon 25.0%
! TGAATATATATAGGAGAAGA+TGG + Chr5:74157599-74157618 MsG0580028072.01.T01:exon 25.0%
! TTATGCTAGTAAATAACCTT+AGG + Chr5:74156771-74156790 MsG0580028072.01.T01:intron 25.0%
! TTGATAAGCACTTATCTTAT+AGG - Chr5:74154653-74154672 None:intergenic 25.0%
! TTTATGTACAATACACCAAA+TGG - Chr5:74154494-74154513 None:intergenic 25.0%
!! AACAATTTGATTGGATTTTG+AGG - Chr5:74157826-74157845 None:intergenic 25.0%
!! AAGCTATAAACTGTTTTCAT+CGG + Chr5:74154737-74154756 MsG0580028072.01.T01:intron 25.0%
!! AATTTTCTTTTTGCAGAACT+TGG - Chr5:74156037-74156056 None:intergenic 25.0%
!! AGTATTCATGTTTCTGTTTA+AGG + Chr5:74154337-74154356 MsG0580028072.01.T01:intron 25.0%
!! ATCATCAACATGTTTTCATA+AGG - Chr5:74157203-74157222 None:intergenic 25.0%
!! ATTAGCAAAACACACATTTT+AGG + Chr5:74157095-74157114 MsG0580028072.01.T01:intron 25.0%
!! ATTTTCTTTTTGCAGAACTT+GGG - Chr5:74156036-74156055 None:intergenic 25.0%
!! TAATTTTTATGTAGTCCTTG+TGG + Chr5:74157245-74157264 MsG0580028072.01.T01:intron 25.0%
!! TCATATGCAGTGTTTTATAT+TGG + Chr5:74157020-74157039 MsG0580028072.01.T01:intron 25.0%
!! TTTTTAACACTTCATACCAT+TGG - Chr5:74156110-74156129 None:intergenic 25.0%
!!! AATTTGTAGTGTGTTTTTTG+TGG + Chr5:74154260-74154279 MsG0580028072.01.T01:intron 25.0%
!!! ATTGGCTTTACTCTTTTTTT+GGG + Chr5:74157038-74157057 MsG0580028072.01.T01:intron 25.0%
!!! TATTGGCTTTACTCTTTTTT+TGG + Chr5:74157037-74157056 MsG0580028072.01.T01:intron 25.0%
!!! TGTTTTTTTGTATGCTTCTA+TGG + Chr5:74156875-74156894 MsG0580028072.01.T01:intron 25.0%
!!! TTTTTCAAAAAATGCTCGAA+AGG + Chr5:74158166-74158185 MsG0580028072.01.T01:exon 25.0%
AACGAAAGTTACAAAGGATA+TGG + Chr5:74154190-74154209 MsG0580028072.01.T01:CDS 30.0%
AAGACACTAGCAAGAATTTA+TGG + Chr5:74154839-74154858 MsG0580028072.01.T01:intron 30.0%
ACAACCATTAAGCAAGATAA+AGG - Chr5:74158315-74158334 None:intergenic 30.0%
ACAACTTAGTTATACTTGTG+GGG + Chr5:74158035-74158054 MsG0580028072.01.T01:intron 30.0%
ACTAAATTCCAAGGTTTGTA+GGG - Chr5:74156481-74156500 None:intergenic 30.0%
ATATCCTTTGTAACTTTCGT+TGG - Chr5:74154191-74154210 None:intergenic 30.0%
CAATCCTTTATCTTGCTTAA+TGG + Chr5:74158308-74158327 MsG0580028072.01.T01:exon 30.0%
CTAAAATAAGCCAATCCAAA+CGG + Chr5:74154614-74154633 MsG0580028072.01.T01:intron 30.0%
GACAACTTAGTTATACTTGT+GGG + Chr5:74158034-74158053 MsG0580028072.01.T01:intron 30.0%
GAGGACAGAAATAAAAACAT+TGG - Chr5:74157807-74157826 None:intergenic 30.0%
GGATATCAAGATTTGACATA+AGG + Chr5:74157976-74157995 MsG0580028072.01.T01:intron 30.0%
GGGAAGGTTTGAATATATAT+AGG + Chr5:74157590-74157609 MsG0580028072.01.T01:exon 30.0%
GTTCTTTGAATCTCAGAATT+TGG - Chr5:74155185-74155204 None:intergenic 30.0%
GTTTACAGTTACACATTTGT+AGG + Chr5:74157692-74157711 MsG0580028072.01.T01:intron 30.0%
TACTAAATTCCAAGGTTTGT+AGG - Chr5:74156482-74156501 None:intergenic 30.0%
TATGAAAGGAAAGAAATAGG+AGG + Chr5:74158225-74158244 MsG0580028072.01.T01:exon 30.0%
TCTTCAATCCTTAAGTGAAA+AGG + Chr5:74158271-74158290 MsG0580028072.01.T01:exon 30.0%
TTATGGCAGTAAATAAGCTT+AGG + Chr5:74154856-74154875 MsG0580028072.01.T01:intron 30.0%
TTTCACTTAAGGATTGAAGA+TGG - Chr5:74158271-74158290 None:intergenic 30.0%
TTTGTCAACTCGATAAACAT+AGG - Chr5:74156828-74156847 None:intergenic 30.0%
! AATGTGTTTATGGACTGTTA+CGG + Chr5:74155480-74155499 MsG0580028072.01.T01:intron 30.0%
! ACAGTTTTCATAGGCTATTT+TGG + Chr5:74156668-74156687 MsG0580028072.01.T01:intron 30.0%
! CAACTTAACCTTTTCACTTA+AGG - Chr5:74158282-74158301 None:intergenic 30.0%
! CAGAAATCGAAACTTTTCAA+GGG + Chr5:74153999-74154018 MsG0580028072.01.T01:CDS 30.0%
! GAATCGATTTCTTCTTAGTT+TGG - Chr5:74154025-74154044 None:intergenic 30.0%
! GAGCTATAAACAGTTTTCAT+AGG + Chr5:74156659-74156678 MsG0580028072.01.T01:intron 30.0%
! GATCATCTTTTGTAGTTAAG+CGG + Chr5:74158133-74158152 MsG0580028072.01.T01:exon 30.0%
! GCACTGATGAAAAATGTTAA+TGG - Chr5:74155934-74155953 None:intergenic 30.0%
! GTTTTGCTAATAATAGTGAC+CGG - Chr5:74157086-74157105 None:intergenic 30.0%
! TAGGAGGATTTTTCACAATA+AGG + Chr5:74158241-74158260 MsG0580028072.01.T01:exon 30.0%
! TATTTCTAAAAGCTACCACA+AGG - Chr5:74157263-74157282 None:intergenic 30.0%
! TGGTCATGATATTTGATGAT+TGG + Chr5:74155532-74155551 MsG0580028072.01.T01:intron 30.0%
! TTTTGTGTAAGTGTCTTCTT+AGG + Chr5:74157955-74157974 MsG0580028072.01.T01:intron 30.0%
!! TGTGGTAGCTTTTAGAAATA+AGG + Chr5:74157263-74157282 MsG0580028072.01.T01:intron 30.0%
!! TTCAGTTATGATTTGGGTTT+TGG + Chr5:74154295-74154314 MsG0580028072.01.T01:intron 30.0%
!! TTTTCAAGGGTAACTGATTT+TGG + Chr5:74157642-74157661 MsG0580028072.01.T01:exon 30.0%
!!! AAGATTTGTTGAGGTTTTCA+AGG + Chr5:74157628-74157647 MsG0580028072.01.T01:exon 30.0%
!!! AAGATTTTTCAAGCAAGAAG+CGG - Chr5:74156325-74156344 None:intergenic 30.0%
!!! AGATTTGTTGAGGTTTTCAA+GGG + Chr5:74157629-74157648 MsG0580028072.01.T01:exon 30.0%
!!! CTTTTTTTGGGCTTATCTTA+TGG + Chr5:74157050-74157069 MsG0580028072.01.T01:intron 30.0%
!!! TTTTTTTTCTCTAACCGGTT+AGG + Chr5:74158079-74158098 MsG0580028072.01.T01:intron 30.0%
AAAGCTGATAGATGTGTGTA+TGG - Chr5:74156252-74156271 None:intergenic 35.0%
AACATCTAAAAAGTGACCAG+AGG + Chr5:74157141-74157160 MsG0580028072.01.T01:intron 35.0%
AACCAAGCAACACAGAAAAA+AGG - Chr5:74158353-74158372 None:intergenic 35.0%
AATCAAGTGGTTGCCAAAAA+GGG - Chr5:74155373-74155392 None:intergenic 35.0%
AATTTACCTTTGCGAGTTTG+AGG - Chr5:74154071-74154090 None:intergenic 35.0%
AATTTCTGTTAAACCAGGAG+GGG + Chr5:74157436-74157455 MsG0580028072.01.T01:intron 35.0%
ACATCTAAAAAGTGACCAGA+GGG + Chr5:74157142-74157161 MsG0580028072.01.T01:intron 35.0%
ACTTGAACCAAAATTCTGAC+TGG + Chr5:74157891-74157910 MsG0580028072.01.T01:intron 35.0%
AGATGTTCAACTAATCCTCT+CGG + Chr5:74155319-74155338 MsG0580028072.01.T01:intron 35.0%
AGATTCAAAGAACGAAGCTA+AGG + Chr5:74155192-74155211 MsG0580028072.01.T01:intron 35.0%
AGCAAAACAATACTGAGAAG+TGG - Chr5:74155817-74155836 None:intergenic 35.0%
AGTTATGAAAAAAGGAGGGA+AGG + Chr5:74157574-74157593 MsG0580028072.01.T01:exon 35.0%
ATCAAGATTTGACATAAGGG+TGG + Chr5:74157980-74157999 MsG0580028072.01.T01:intron 35.0%
ATGTACAATACACCAAATGG+TGG - Chr5:74154491-74154510 None:intergenic 35.0%
CAATTTCTGTTAAACCAGGA+GGG + Chr5:74157435-74157454 MsG0580028072.01.T01:intron 35.0%
CCTTGGAATTTAGTAACACA+TGG + Chr5:74156487-74156506 MsG0580028072.01.T01:intron 35.0%
CGACAACTTAGTTATACTTG+TGG + Chr5:74158033-74158052 MsG0580028072.01.T01:intron 35.0%
GAAGCCATTAACACTACAAT+GGG + Chr5:74155099-74155118 MsG0580028072.01.T01:intron 35.0%
GAATCAAGTAGTTGCCAAAA+GGG + Chr5:74156347-74156366 MsG0580028072.01.T01:intron 35.0%
GATAAACAAGCTTCTGCATT+TGG - Chr5:74154902-74154921 None:intergenic 35.0%
GCTCATGAACAATTTACCTA+AGG - Chr5:74154875-74154894 None:intergenic 35.0%
GGTTCAATTTCTGTTAAACC+AGG + Chr5:74157431-74157450 MsG0580028072.01.T01:intron 35.0%
TAATCAAGTGGTTGCCAAAA+AGG - Chr5:74155374-74155393 None:intergenic 35.0%
TCAATTTCTGTTAAACCAGG+AGG + Chr5:74157434-74157453 MsG0580028072.01.T01:intron 35.0%
TGAATCAAGTAGTTGCCAAA+AGG + Chr5:74156346-74156365 MsG0580028072.01.T01:intron 35.0%
TGATTGTAACTCTGTTGGAT+TGG + Chr5:74158372-74158391 MsG0580028072.01.T01:exon 35.0%
TGGTTTCAATGGCTATTGAT+CGG - Chr5:74156429-74156448 None:intergenic 35.0%
TGTACAATACACCAAATGGT+GGG - Chr5:74154490-74154509 None:intergenic 35.0%
TGTCTCTGGTAAATCTTATG+CGG + Chr5:74158399-74158418 MsG0580028072.01.T01:exon 35.0%
TTGGTTGATTGTAACTCTGT+TGG + Chr5:74158367-74158386 MsG0580028072.01.T01:exon 35.0%
! AAGTGAAAAGGTTAAGTTGC+AGG + Chr5:74158283-74158302 MsG0580028072.01.T01:exon 35.0%
! ATCATGACCAGTCAGAATTT+TGG - Chr5:74157901-74157920 None:intergenic 35.0%
! ATGTGTTTATGGACTGTTAC+GGG + Chr5:74155481-74155500 MsG0580028072.01.T01:intron 35.0%
! CCATGTGTTACTAAATTCCA+AGG - Chr5:74156490-74156509 None:intergenic 35.0%
! CTGCTTTAACTTCATTGCAA+TGG - Chr5:74157476-74157495 None:intergenic 35.0%
! GCAGAAATCGAAACTTTTCA+AGG + Chr5:74153998-74154017 MsG0580028072.01.T01:CDS 35.0%
! GTAACTTGTAAGCACTTGTA+TGG + Chr5:74155074-74155093 MsG0580028072.01.T01:intron 35.0%
! TACACAATATGCACCCTTTT+TGG + Chr5:74155357-74155376 MsG0580028072.01.T01:intron 35.0%
! TGCTCGCAAGTATTTTCATT+CGG - Chr5:74156706-74156725 None:intergenic 35.0%
! TGTGATTTGGGTCATATGAA+AGG + Chr5:74158211-74158230 MsG0580028072.01.T01:exon 35.0%
! TTTTGTAGTTAAGCGGTCTA+GGG + Chr5:74158140-74158159 MsG0580028072.01.T01:exon 35.0%
!! AGGATTAGTTGAACATCTGT+CGG - Chr5:74155317-74155336 None:intergenic 35.0%
!! GAAGCTAAGGATTGATTTTG+AGG + Chr5:74155205-74155224 MsG0580028072.01.T01:intron 35.0%
!! GCATTGATGAAAAGCGTTAT+TGG + Chr5:74155735-74155754 MsG0580028072.01.T01:intron 35.0%
!! TGGGATATGAAGATTTGTTG+AGG + Chr5:74157619-74157638 MsG0580028072.01.T01:exon 35.0%
!!! ATGGCGTAGTAACTCTTTTT+TGG + Chr5:74155033-74155052 MsG0580028072.01.T01:intron 35.0%
!!! ATGTTTTGTAGTGGACAGAA+GGG - Chr5:74157933-74157952 None:intergenic 35.0%
!!! CTTTTTTGGGGCTTATCTTA+TGG + Chr5:74155047-74155066 MsG0580028072.01.T01:intron 35.0%
!!! TGGCGTAGTAACTCTTTTTT+GGG + Chr5:74155034-74155053 MsG0580028072.01.T01:intron 35.0%
AACGATTCTTCACGACTGAT+AGG + Chr5:74156389-74156408 MsG0580028072.01.T01:intron 40.0%
AAGCAAGGAGAATTGTCACA+TGG + Chr5:74155404-74155423 MsG0580028072.01.T01:intron 40.0%
AATTGTCACATGGGAGTAGA+TGG + Chr5:74155414-74155433 MsG0580028072.01.T01:intron 40.0%
ACAAGCTTCTGCATTTGGAT+CGG - Chr5:74154897-74154916 None:intergenic 40.0%
ACTAATCACTCTGTTCAAGC+AGG - Chr5:74155793-74155812 None:intergenic 40.0%
ACTTGTAAGCACTTGTATGG+TGG + Chr5:74155077-74155096 MsG0580028072.01.T01:intron 40.0%
AGCAAGGAGAATTGTCACAT+GGG + Chr5:74155405-74155424 MsG0580028072.01.T01:intron 40.0%
ATCTTATGGCATACATCCAC+CGG + Chr5:74157064-74157083 MsG0580028072.01.T01:intron 40.0%
CAAGCAACACAGAAAAAAGG+AGG - Chr5:74158350-74158369 None:intergenic 40.0%
GAAGCCAACGAAAGTTACAA+AGG + Chr5:74154184-74154203 MsG0580028072.01.T01:CDS 40.0%
GGAAGCCATTAACACTACAA+TGG + Chr5:74155098-74155117 MsG0580028072.01.T01:intron 40.0%
GGACTTATTGTTGCGAAGAA+AGG + Chr5:74158001-74158020 MsG0580028072.01.T01:intron 40.0%
GGTATTTCAAGGAAATGTGC+AGG + Chr5:74158111-74158130 MsG0580028072.01.T01:intron 40.0%
GTTCTATAATAAGGGCAACC+CGG + Chr5:74154424-74154443 MsG0580028072.01.T01:intron 40.0%
TAATTAGGGTCCGTTTGGAT+TGG - Chr5:74154627-74154646 None:intergenic 40.0%
TATCTGCAGAAGAAGACTGA+CGG + Chr5:74155287-74155306 MsG0580028072.01.T01:intron 40.0%
TATGATTACCACTCCTACGA+TGG - Chr5:74156578-74156597 None:intergenic 40.0%
TCAACTCGATAAACATAGGC+TGG - Chr5:74156824-74156843 None:intergenic 40.0%
TCCTCCCATTGTAGTGTTAA+TGG - Chr5:74155106-74155125 None:intergenic 40.0%
TCTGGTAAATCTTATGCGGA+GGG + Chr5:74158403-74158422 MsG0580028072.01.T01:exon 40.0%
TTGCTAATAATAGTGACCGG+TGG - Chr5:74157083-74157102 None:intergenic 40.0%
TTGGGTTATGCTGAACATGT+AGG - Chr5:74156018-74156037 None:intergenic 40.0%
TTTGTAGTTAAGCGGTCTAG+GGG + Chr5:74158141-74158160 MsG0580028072.01.T01:exon 40.0%
! AAAGTACCTCAAACTCGCAA+AGG + Chr5:74154062-74154081 MsG0580028072.01.T01:CDS 40.0%
! AATGATTTTTCACAGCCGAG+AGG - Chr5:74155337-74155356 None:intergenic 40.0%
! CTTTTGTAGTTAAGCGGTCT+AGG + Chr5:74158139-74158158 MsG0580028072.01.T01:exon 40.0%
! GTTGGTTGGTATAATGGCAT+TGG + Chr5:74155245-74155264 MsG0580028072.01.T01:intron 40.0%
! TATTTGGCTCGCTGTGATTT+GGG + Chr5:74158199-74158218 MsG0580028072.01.T01:exon 40.0%
! TTATTTGGCTCGCTGTGATT+TGG + Chr5:74158198-74158217 MsG0580028072.01.T01:exon 40.0%
! TTTCTGTTTAAGGCTCCGTT+TGG + Chr5:74154347-74154366 MsG0580028072.01.T01:intron 40.0%
!! CAAGGGTAACTGATTTTGGT+AGG + Chr5:74157646-74157665 MsG0580028072.01.T01:exon 40.0%
!! GGATTAGTTGAACATCTGTC+GGG - Chr5:74155316-74155335 None:intergenic 40.0%
!! GGTAACTGATTTTGGTAGGT+TGG + Chr5:74157650-74157669 MsG0580028072.01.T01:intron 40.0%
!!! ACTGATTTTGGTAGGTTGGT+TGG + Chr5:74157654-74157673 MsG0580028072.01.T01:intron 40.0%
!!! CTCCTTTTTTCTGTGTTGCT+TGG + Chr5:74158348-74158367 MsG0580028072.01.T01:exon 40.0%
!!! CTGATTTTGGTAGGTTGGTT+GGG + Chr5:74157655-74157674 MsG0580028072.01.T01:intron 40.0%
!!! GATGTTTTGTAGTGGACAGA+AGG - Chr5:74157934-74157953 None:intergenic 40.0%
!!! GGCGTAGTAACTCTTTTTTG+GGG + Chr5:74155035-74155054 MsG0580028072.01.T01:intron 40.0%
!!! TGTTTTGTAGTGGACAGAAG+GGG - Chr5:74157932-74157951 None:intergenic 40.0%
AATGTCTTCCATCGTAGGAG+TGG + Chr5:74156567-74156586 MsG0580028072.01.T01:intron 45.0%
ACTTTGCCATGACGATTAGC+AGG - Chr5:74154047-74154066 None:intergenic 45.0%
ATACCGTTGAGACTCCTAAC+CGG - Chr5:74158096-74158115 None:intergenic 45.0%
CTCTGGTAAATCTTATGCGG+AGG + Chr5:74158402-74158421 MsG0580028072.01.T01:exon 45.0%
GAAGACATTGACACTGCGAT+GGG - Chr5:74156556-74156575 None:intergenic 45.0%
GCCATTAACACTACAATGGG+AGG + Chr5:74155102-74155121 MsG0580028072.01.T01:intron 45.0%
GGACTTAATTAGGGTCCGTT+TGG - Chr5:74154632-74154651 None:intergenic 45.0%
GGAGTCTCAACGGTATTTCA+AGG + Chr5:74158100-74158119 MsG0580028072.01.T01:intron 45.0%
GTGTCAATGTCTTCCATCGT+AGG + Chr5:74156562-74156581 MsG0580028072.01.T01:intron 45.0%
TAACCGGTTAGGAGTCTCAA+CGG + Chr5:74158090-74158109 MsG0580028072.01.T01:intron 45.0%
TCAATGGCTATTGATCGGAG+TGG - Chr5:74156424-74156443 None:intergenic 45.0%
TCGATTCCTGCTAATCGTCA+TGG + Chr5:74154038-74154057 MsG0580028072.01.T01:CDS 45.0%
TTGAGGACACCATGCATAGA+GGG + Chr5:74155222-74155241 MsG0580028072.01.T01:intron 45.0%
TTGTAGTTAAGCGGTCTAGG+GGG + Chr5:74158142-74158161 MsG0580028072.01.T01:exon 45.0%
TTTGAGGACACCATGCATAG+AGG + Chr5:74155221-74155240 MsG0580028072.01.T01:intron 45.0%
! AGTTATACTTGTGGGGTGTC+CGG + Chr5:74158042-74158061 MsG0580028072.01.T01:intron 45.0%
! CGATGTTTCTGCAGCTTATG+TGG + Chr5:74156983-74157002 MsG0580028072.01.T01:intron 45.0%
! GAGCTGATAACACACCCTTT+TGG - Chr5:74156364-74156383 None:intergenic 45.0%
! TAATGAATTTGCTCCCCTCC+TGG - Chr5:74157452-74157471 None:intergenic 45.0%
!! AGAGGGGTTGGTTGGTATAA+TGG + Chr5:74155239-74155258 MsG0580028072.01.T01:intron 45.0%
!! GTTGGATTGGTAAGTGTCTC+TGG + Chr5:74158385-74158404 MsG0580028072.01.T01:exon 45.0%
!!! GATTTTAATTTTTTTTATTT+GGG + Chr5:74157410-74157429 MsG0580028072.01.T01:intron 5.0%
!!! TGATTTTAATTTTTTTTATT+TGG + Chr5:74157409-74157428 MsG0580028072.01.T01:intron 5.0%
ACATAGGCTGGCATTAGCGT+TGG - Chr5:74156812-74156831 None:intergenic 50.0%
ACTGTAGCTACAAAGGACGG+TGG + Chr5:74157498-74157517 MsG0580028072.01.T01:exon 50.0%
AGAAGCAGCCCTACAAACCT+TGG + Chr5:74156470-74156489 MsG0580028072.01.T01:intron 50.0%
AGCAGCGACTGTAGCTACAA+AGG + Chr5:74157491-74157510 MsG0580028072.01.T01:exon 50.0%
AGGTTTGTAGGGCTGCTTCT+AGG - Chr5:74156470-74156489 None:intergenic 50.0%
GCGACTGTAGCTACAAAGGA+CGG + Chr5:74157495-74157514 MsG0580028072.01.T01:exon 50.0%
GGAAGACATTGACACTGCGA+TGG - Chr5:74156557-74156576 None:intergenic 50.0%
TGAGGACACCATGCATAGAG+GGG + Chr5:74155223-74155242 MsG0580028072.01.T01:intron 50.0%
! TCTAGGACACTGTGCACAGA+GGG - Chr5:74156453-74156472 None:intergenic 50.0%
!! TGGTAGGTTGGTTGGGACTT+GGG + Chr5:74157662-74157681 MsG0580028072.01.T01:intron 50.0%
!! TTCTAGGACACTGTGCACAG+AGG - Chr5:74156454-74156473 None:intergenic 50.0%
!! TTGGTAGGTTGGTTGGGACT+TGG + Chr5:74157661-74157680 MsG0580028072.01.T01:intron 50.0%
ACAGCACCAGAGTCTGCAAG+TGG + Chr5:74157540-74157559 MsG0580028072.01.T01:exon 55.0%
ACTGAAGCTCCCGCATATGC+AGG + Chr5:74154450-74154469 MsG0580028072.01.T01:intron 55.0%
CCAACCAACCCCTCTATGCA+TGG - Chr5:74155234-74155253 None:intergenic 55.0%
CTAGGACACTGTGCACAGAG+GGG - Chr5:74156452-74156471 None:intergenic 55.0%
CTGAAGCTCCCGCATATGCA+GGG + Chr5:74154451-74154470 MsG0580028072.01.T01:intron 55.0%
GACACCATGCATAGAGGGGT+TGG + Chr5:74155227-74155246 MsG0580028072.01.T01:intron 55.0%
GACATTGACACTGCGATGGG+AGG - Chr5:74156553-74156572 None:intergenic 55.0%
GCACAGAGGGGTGGTTTCAA+TGG - Chr5:74156440-74156459 None:intergenic 55.0%
TCTGCACCACTTGCAGACTC+TGG - Chr5:74157549-74157568 None:intergenic 55.0%
TGCTTAGGAGTGACACCCTC+TGG - Chr5:74157160-74157179 None:intergenic 55.0%
! CCATGCATAGAGGGGTTGGT+TGG + Chr5:74155231-74155250 MsG0580028072.01.T01:intron 55.0%
!! AAGCAAGAAGCGGTGTCACG+TGG - Chr5:74156315-74156334 None:intergenic 55.0%
!! AGCAAGAAGCGGTGTCACGT+GGG - Chr5:74156314-74156333 None:intergenic 55.0%
ATGCGGGAGCTTCAGTGCAC+CGG - Chr5:74154446-74154465 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+GGG + Chr5:74154463-74154482 MsG0580028072.01.T01:intron 60.0%
CTTCCCGGACCCTGCATATG+CGG - Chr5:74154463-74154482 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + Chr5:74154462-74154481 MsG0580028072.01.T01:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - Chr5:74154462-74154481 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr5:74154478-74154497 None:intergenic 60.0%
!! CGGTGTCACGTGGGAGTAGA+TGG - Chr5:74156305-74156324 None:intergenic 60.0%
CGCATATGCAGGGTCCGGGA+AGG + Chr5:74154461-74154480 MsG0580028072.01.T01:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr5:74154476-74154495 MsG0580028072.01.T01:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG + Chr5:74154457-74154476 MsG0580028072.01.T01:intron 65.0%
GCTCCCGCATATGCAGGGTC+CGG + Chr5:74154456-74154475 MsG0580028072.01.T01:intron 65.0%
GGACACTGTGCACAGAGGGG+TGG - Chr5:74156449-74156468 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - Chr5:74154445-74154464 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 74153956 74158464 74153956 ID=MsG0580028072.01;
Chr5 mRNA 74153956 74158464 74153956 ID=MsG0580028072.01.T01;Parent=MsG0580028072.01
Chr5 exon 74153956 74154083 74153956 ID=MsG0580028072.01.T01.exon;Parent=MsG0580028072.01.T01
Chr5 CDS 74153993 74154083 74153993 ID=MsG0580028072.01.T01.cds;Parent=MsG0580028072.01.T01
Chr5 CDS 74154171 74154223 74154171 ID=MsG0580028072.01.T01.cds;Parent=MsG0580028072.01.T01
Chr5 exon 74154171 74154223 74154171 ID=MsG0580028072.01.T01.exon;Parent=MsG0580028072.01.T01
Chr5 CDS 74157453 74157575 74157453 ID=MsG0580028072.01.T01.cds;Parent=MsG0580028072.01.T01
Chr5 exon 74157453 74157667 74157453 ID=MsG0580028072.01.T01.exon;Parent=MsG0580028072.01.T01
Chr5 exon 74158133 74158464 74158133 ID=MsG0580028072.01.T01.exon;Parent=MsG0580028072.01.T01
Gene Sequence

>MsG0580028072.01.T01

ATGACGCAGAAATCGAAACTTTTCAAGGGCCAAACTAAGAAGAAATCGATTCCTGCTAATCGTCATGGCAAAGTACCTCAAACTCGCAAAGGGAAGAGATTTGTGAAGCCAACGAAAGTTACAAAGGATATGGATGCTGATCGTGAGGGGAGCAAATTCATTAACCATTGCAATGAAGTTAAAGCAGCGACTGTAGCTACAAAGGACGGTGGTTATCTAAGCATTGTTAAGACAGCACCAGAGTCTGCAAGTGGTGCAGATAAATAG

Protein sequence

>MsG0580028072.01.T01

MTQKSKLFKGQTKKKSIPANRHGKVPQTRKGKRFVKPTKVTKDMDADREGSKFINHCNEVKAATVATKDGGYLSIVKTAPESASGADK*