Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043551.01.T01 | XP_027909301.1 | 78.205 | 312 | 38 | 1 | 1 | 282 | 1 | 312 | 4.24E-173 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043551.01.T01 | P51074 | 64.013 | 314 | 83 | 1 | 1 | 284 | 1 | 314 | 6.13E-144 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043551.01.T01 | G7LF88 | 88.535 | 314 | 6 | 1 | 1 | 284 | 1 | 314 | 0.0 | 551 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048633.01 | MsG0880043551.01 | 0.811078 | 8.380159e-51 | 5.138405e-48 |
| MsG0080048652.01 | MsG0880043551.01 | 0.835590 | 1.536127e-56 | 1.886931e-53 |
| MsG0080048694.01 | MsG0880043551.01 | -0.810410 | 1.168840e-50 | 7.040137e-48 |
| MsG0080048695.01 | MsG0880043551.01 | -0.810212 | 1.289910e-50 | 7.728806e-48 |
| MsG0180001108.01 | MsG0880043551.01 | 0.810465 | 1.137080e-50 | 6.859096e-48 |
| MsG0180001497.01 | MsG0880043551.01 | 0.805690 | 1.182051e-49 | 6.294539e-47 |
| MsG0180002808.01 | MsG0880043551.01 | 0.808447 | 3.083853e-50 | 1.763760e-47 |
| MsG0180005757.01 | MsG0880043551.01 | 0.836781 | 7.653607e-57 | 9.745391e-54 |
| MsG0780040878.01 | MsG0880043551.01 | 0.804558 | 2.039377e-49 | 1.054751e-46 |
| MsG0880043261.01 | MsG0880043551.01 | 0.839671 | 1.378509e-57 | 1.917215e-54 |
| MsG0880043550.01 | MsG0880043551.01 | 0.830813 | 2.377171e-55 | 2.532349e-52 |
| MsG0880043551.01 | MsG0880043961.01 | 0.816758 | 4.687225e-52 | 3.350597e-49 |
| MsG0880043551.01 | MsG0880043983.01 | 0.876055 | 1.891670e-68 | 9.040105e-65 |
| MsG0880043551.01 | MsG0880043989.01 | 0.860668 | 1.758800e-63 | 4.846148e-60 |
| MsG0880043551.01 | MsG0880045054.01 | 0.808731 | 2.681362e-50 | 1.544826e-47 |
| MsG0880043551.01 | MsG0880045385.01 | -0.801090 | 1.060808e-48 | 5.022117e-46 |
| MsG0880043551.01 | MsG0880045790.01 | 0.810934 | 9.005168e-51 | 5.501017e-48 |
| MsG0880043551.01 | MsG0880046463.01 | 0.819305 | 1.245228e-52 | 9.546161e-50 |
| MsG0280011267.01 | MsG0880043551.01 | 0.800117 | 1.675212e-48 | 7.736840e-46 |
| MsG0380013415.01 | MsG0880043551.01 | 0.804658 | 1.943886e-49 | 1.007967e-46 |
| MsG0380013928.01 | MsG0880043551.01 | -0.803236 | 3.838775e-49 | 1.919031e-46 |
| MsG0380014029.01 | MsG0880043551.01 | -0.806741 | 7.100599e-50 | 3.884053e-47 |
| MsG0680030961.01 | MsG0880043551.01 | 0.818511 | 1.886510e-52 | 1.414994e-49 |
| MsG0680031178.01 | MsG0880043551.01 | 0.819765 | 9.781367e-53 | 7.596370e-50 |
| MsG0680031841.01 | MsG0880043551.01 | 0.819022 | 1.444398e-52 | 1.098864e-49 |
| MsG0480019028.01 | MsG0880043551.01 | -0.800509 | 1.394105e-48 | 6.502932e-46 |
| MsG0480020722.01 | MsG0880043551.01 | 0.833928 | 4.022016e-56 | 4.701011e-53 |
| MsG0480023195.01 | MsG0880043551.01 | 0.839617 | 1.423237e-57 | 1.976258e-54 |
| MsG0480023322.01 | MsG0880043551.01 | 0.811959 | 5.393083e-51 | 3.384767e-48 |
| MsG0580025023.01 | MsG0880043551.01 | 0.807916 | 4.001618e-50 | 2.256643e-47 |
| MsG0580025117.01 | MsG0880043551.01 | 0.807276 | 5.469647e-50 | 3.033800e-47 |
| MsG0380016476.01 | MsG0880043551.01 | 0.803731 | 3.030978e-49 | 1.534650e-46 |
| MsG0380016524.01 | MsG0880043551.01 | 0.819938 | 8.929847e-53 | 6.968527e-50 |
| MsG0380016935.01 | MsG0880043551.01 | -0.801508 | 8.712039e-49 | 4.167928e-46 |
| MsG0380017231.01 | MsG0880043551.01 | 0.802110 | 6.552647e-49 | 3.183076e-46 |
| MsG0580026162.01 | MsG0880043551.01 | 0.813217 | 2.861790e-51 | 1.857566e-48 |
| MsG0580027036.01 | MsG0880043551.01 | 0.815769 | 7.801068e-52 | 5.427907e-49 |
| MsG0580027641.01 | MsG0880043551.01 | 0.821874 | 3.201890e-53 | 2.637240e-50 |
| MsG0580028023.01 | MsG0880043551.01 | 0.816532 | 5.269705e-52 | 3.743518e-49 |
| MsG0580028565.01 | MsG0880043551.01 | 0.818118 | 2.316502e-52 | 1.718714e-49 |
| MsG0680030545.01 | MsG0880043551.01 | 0.822726 | 2.030476e-53 | 1.713545e-50 |
| MsG0280007786.01 | MsG0880043551.01 | 0.800814 | 1.208119e-48 | 5.678996e-46 |
| MsG0280008495.01 | MsG0880043551.01 | 0.808335 | 3.257516e-50 | 1.857637e-47 |
| MsG0280008553.01 | MsG0880043551.01 | 0.823713 | 1.194441e-53 | 1.036646e-50 |
| MsG0280010142.01 | MsG0880043551.01 | -0.805248 | 1.462958e-49 | 7.701910e-47 |
| MsG0780039916.01 | MsG0880043551.01 | 0.807621 | 4.622433e-50 | 2.586872e-47 |
| MsG0780040022.01 | MsG0880043551.01 | 0.815312 | 9.858386e-52 | 6.773378e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043551.01.T01 | MTR_8g038220 | 88.535 | 314 | 6 | 1 | 1 | 284 | 1 | 314 | 0.0 | 551 |
| MsG0880043551.01.T01 | MTR_8g038220 | 87.261 | 314 | 9 | 2 | 1 | 284 | 1 | 313 | 0.0 | 537 |
| MsG0880043551.01.T01 | MTR_3g018780 | 70.701 | 314 | 62 | 1 | 1 | 284 | 1 | 314 | 6.30e-162 | 452 |
| MsG0880043551.01.T01 | MTR_8g038180 | 71.154 | 312 | 60 | 1 | 1 | 282 | 1 | 312 | 1.81e-159 | 446 |
| MsG0880043551.01.T01 | MTR_8g038210 | 68.153 | 314 | 69 | 2 | 1 | 284 | 1 | 313 | 1.81e-149 | 421 |
| MsG0880043551.01.T01 | MTR_3g018790 | 64.013 | 314 | 83 | 1 | 1 | 284 | 1 | 314 | 9.18e-146 | 412 |
| MsG0880043551.01.T01 | MTR_8g038210 | 66.242 | 314 | 75 | 2 | 1 | 284 | 1 | 313 | 1.60e-145 | 411 |
| MsG0880043551.01.T01 | MTR_3g018790 | 60.744 | 242 | 65 | 1 | 73 | 284 | 19 | 260 | 7.13e-102 | 298 |
| MsG0880043551.01.T01 | MTR_2g031980 | 42.812 | 313 | 149 | 1 | 1 | 283 | 1 | 313 | 2.03e-87 | 263 |
| MsG0880043551.01.T01 | MTR_0276s0050 | 45.079 | 315 | 142 | 2 | 1 | 284 | 1 | 315 | 1.65e-81 | 248 |
| MsG0880043551.01.T01 | MTR_5g063670 | 42.857 | 315 | 149 | 2 | 1 | 284 | 1 | 315 | 4.72e-81 | 247 |
| MsG0880043551.01.T01 | MTR_3g018920 | 61.828 | 186 | 53 | 3 | 1 | 178 | 1 | 176 | 1.39e-74 | 226 |
| MsG0880043551.01.T01 | MTR_8g038150 | 38.291 | 316 | 161 | 3 | 1 | 282 | 1 | 316 | 1.29e-65 | 208 |
| MsG0880043551.01.T01 | MTR_8g107640 | 37.380 | 313 | 163 | 4 | 1 | 281 | 1 | 312 | 1.28e-61 | 197 |
| MsG0880043551.01.T01 | MTR_6g071605 | 35.962 | 317 | 168 | 5 | 1 | 284 | 1 | 315 | 5.63e-55 | 180 |
| MsG0880043551.01.T01 | MTR_6g071615 | 37.224 | 317 | 164 | 5 | 1 | 284 | 1 | 315 | 2.56e-54 | 179 |
| MsG0880043551.01.T01 | MTR_1g033560 | 33.866 | 313 | 174 | 4 | 1 | 281 | 1 | 312 | 3.97e-52 | 173 |
| MsG0880043551.01.T01 | MTR_1g112520 | 34.494 | 316 | 172 | 5 | 1 | 283 | 1 | 314 | 1.26e-49 | 166 |
| MsG0880043551.01.T01 | MTR_6g071595 | 34.114 | 299 | 163 | 4 | 15 | 281 | 16 | 312 | 1.57e-46 | 159 |
| MsG0880043551.01.T01 | MTR_3g018925 | 71.134 | 97 | 28 | 0 | 188 | 284 | 13 | 109 | 4.82e-43 | 143 |
| MsG0880043551.01.T01 | MTR_8g038170 | 33.546 | 313 | 153 | 7 | 17 | 282 | 8 | 312 | 2.38e-39 | 140 |
| MsG0880043551.01.T01 | MTR_8g038170 | 33.546 | 313 | 153 | 7 | 17 | 282 | 8 | 312 | 2.38e-39 | 140 |
| MsG0880043551.01.T01 | MTR_6g071595 | 29.958 | 237 | 132 | 4 | 15 | 219 | 16 | 250 | 8.02e-29 | 111 |
| MsG0880043551.01.T01 | MTR_6g028030 | 26.603 | 312 | 187 | 7 | 9 | 282 | 3 | 310 | 7.28e-27 | 107 |
| MsG0880043551.01.T01 | MTR_8g038090 | 47.222 | 72 | 33 | 2 | 214 | 282 | 22 | 91 | 2.02e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043551.01.T01 | AT5G12380 | 49.518 | 311 | 127 | 1 | 1 | 281 | 1 | 311 | 4.55e-108 | 316 |
| MsG0880043551.01.T01 | AT5G10230 | 46.154 | 312 | 137 | 2 | 1 | 281 | 1 | 312 | 2.86e-86 | 261 |
| MsG0880043551.01.T01 | AT5G10220 | 47.771 | 314 | 131 | 4 | 1 | 281 | 1 | 314 | 4.45e-86 | 260 |
| MsG0880043551.01.T01 | AT1G35720 | 45.253 | 316 | 141 | 3 | 1 | 284 | 1 | 316 | 5.02e-86 | 260 |
| MsG0880043551.01.T01 | AT5G65020 | 44.304 | 316 | 144 | 3 | 1 | 284 | 1 | 316 | 9.90e-82 | 249 |
| MsG0880043551.01.T01 | AT5G65020 | 43.986 | 291 | 132 | 2 | 25 | 284 | 11 | 301 | 5.81e-76 | 234 |
| MsG0880043551.01.T01 | AT2G38760 | 38.125 | 320 | 161 | 4 | 1 | 283 | 1 | 320 | 2.88e-67 | 212 |
| MsG0880043551.01.T01 | AT1G68090 | 32.588 | 313 | 179 | 3 | 1 | 281 | 1 | 313 | 1.22e-47 | 161 |
| MsG0880043551.01.T01 | AT2G38750 | 30.844 | 308 | 158 | 8 | 25 | 284 | 19 | 319 | 5.40e-31 | 118 |
| MsG0880043551.01.T01 | AT2G38750 | 30.844 | 308 | 158 | 8 | 25 | 284 | 2 | 302 | 5.51e-31 | 117 |
| MsG0880043551.01.T01 | AT1G68090 | 30.000 | 250 | 143 | 3 | 1 | 218 | 1 | 250 | 2.86e-30 | 114 |
Find 66 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGTGTTATCACAATTT+TGG | 0.141323 | 8:-26460958 | MsG0880043551.01.T01:CDS |
| TGCTGATCGCGATGCTGTTT+TGG | 0.280081 | 8:-26460679 | MsG0880043551.01.T01:CDS |
| AGGCATATATATTGTACTAA+TGG | 0.292972 | 8:-26459632 | MsG0880043551.01.T01:three_prime_UTR |
| GATGTCCTTCAGATCTTTCT+CGG | 0.304640 | 8:+26459783 | None:intergenic |
| TGCTGAGATCAATCCAAAAT+TGG | 0.314053 | 8:-26460331 | MsG0880043551.01.T01:CDS |
| AAGTTCATCCTTACCTTGTT+GGG | 0.316314 | 8:-26459685 | MsG0880043551.01.T01:CDS |
| TATATTGTACTAATGGGATT+TGG | 0.319364 | 8:-26459625 | MsG0880043551.01.T01:three_prime_UTR |
| CTCATTGCCAACACTTCTTC+CGG | 0.352051 | 8:+26460588 | None:intergenic |
| AGTGGTTGATGGGAGCAATA+AGG | 0.354406 | 8:+26461239 | None:intergenic |
| GGATTCTAATGGCTTCTTCA+TGG | 0.356639 | 8:+26460256 | None:intergenic |
| ACAAATCAGAAAATCTTATC+AGG | 0.360843 | 8:-26460910 | MsG0880043551.01.T01:CDS |
| GGCATATATATTGTACTAAT+GGG | 0.379639 | 8:-26459631 | MsG0880043551.01.T01:three_prime_UTR |
| TTGGCAGCTGTTGGTTGGAT+TGG | 0.381700 | 8:-26460376 | MsG0880043551.01.T01:intron |
| TTCTTTCTTGTGGTATGGTT+TGG | 0.383384 | 8:-26459592 | MsG0880043551.01.T01:three_prime_UTR |
| TTCTGCGCGGTGCGCTGAAA+AGG | 0.395157 | 8:-26459852 | MsG0880043551.01.T01:CDS |
| GCAGTGGCAAAGGAAATTTC+AGG | 0.403300 | 8:-26459718 | MsG0880043551.01.T01:CDS |
| GAAGTTCATCCTTACCTTGT+TGG | 0.411489 | 8:-26459686 | MsG0880043551.01.T01:CDS |
| CACCAGAGAGTTCAGATTCA+AGG | 0.434862 | 8:+26460859 | None:intergenic |
| TTGGTTTCTTTCTTGTGGTA+TGG | 0.440195 | 8:-26459597 | MsG0880043551.01.T01:three_prime_UTR |
| CTAATGGGATTTGGATATGT+TGG | 0.448294 | 8:-26459616 | MsG0880043551.01.T01:three_prime_UTR |
| GAGTCTTGCTCCTTGTAGTA+AGG | 0.451508 | 8:+26460235 | None:intergenic |
| TGAACTCTCTGGTGACTTTG+AGG | 0.452193 | 8:-26460850 | MsG0880043551.01.T01:intron |
| CCTTGTAGTAAGGATTCTAA+TGG | 0.455797 | 8:+26460245 | None:intergenic |
| GTGGTTGATGGGAGCAATAA+GGG | 0.464564 | 8:+26461240 | None:intergenic |
| CGCGGTGCGCTGAAAAGGGT+TGG | 0.481256 | 8:-26459847 | MsG0880043551.01.T01:CDS |
| CGCCTTGAATCTGAACTCTC+TGG | 0.485385 | 8:-26460861 | MsG0880043551.01.T01:CDS |
| TGTTCTTGGCAGCTGTTGGT+TGG | 0.490794 | 8:-26460381 | MsG0880043551.01.T01:intron |
| AATTGTTTCTGTTCTTTCAC+CGG | 0.496681 | 8:-26460607 | MsG0880043551.01.T01:CDS |
| TGCAACAGCAGAGTGGTTGA+TGG | 0.498104 | 8:+26461228 | None:intergenic |
| GTTCAGATTCAAGGCGTTTG+AGG | 0.508007 | 8:+26460868 | None:intergenic |
| CTTGCTTCCCCAACAAGGTA+AGG | 0.508755 | 8:+26459677 | None:intergenic |
| AAAACAGCATCGCGATCAGC+AGG | 0.508816 | 8:+26460681 | None:intergenic |
| ATATGTTGGTTTCTTTCTTG+TGG | 0.510437 | 8:-26459602 | MsG0880043551.01.T01:three_prime_UTR |
| AGCTGTGTACCGTTGGATGC+TGG | 0.510810 | 8:-26460706 | MsG0880043551.01.T01:CDS |
| GGCGTTTGAGGATATCCTCT+TGG | 0.516904 | 8:+26460880 | None:intergenic |
| TCTGCGCGGTGCGCTGAAAA+GGG | 0.523526 | 8:-26459851 | MsG0880043551.01.T01:CDS |
| TTTGGCTAATGTAGCCATCA+AGG | 0.526066 | 8:-26460661 | MsG0880043551.01.T01:CDS |
| CCTTGAGGATGCAGTGGCAA+AGG | 0.527077 | 8:-26459728 | MsG0880043551.01.T01:CDS |
| CCATAAGAAGTACTATGAAA+AGG | 0.532592 | 8:-26459996 | MsG0880043551.01.T01:intron |
| CCTTTGCCACTGCATCCTCA+AGG | 0.543737 | 8:+26459728 | None:intergenic |
| ATCAGAGAGCTGTGTACCGT+TGG | 0.546500 | 8:-26460713 | MsG0880043551.01.T01:intron |
| CCATTAGAATCCTTACTACA+AGG | 0.546524 | 8:-26460245 | MsG0880043551.01.T01:CDS |
| TGAAGAAATTGCTCTTGCTA+AGG | 0.548125 | 8:-26459652 | MsG0880043551.01.T01:three_prime_UTR |
| TATTCTTCATGAATCTATCA+AGG | 0.552458 | 8:-26460292 | MsG0880043551.01.T01:CDS |
| GCAACAGCAGAGTGGTTGAT+GGG | 0.553777 | 8:+26461229 | None:intergenic |
| TTGGTGAGCTCATTTAGATA+CGG | 0.558424 | 8:-26460357 | MsG0880043551.01.T01:CDS |
| AGGGTTGGAACTGATGAAGA+TGG | 0.558767 | 8:-26459832 | MsG0880043551.01.T01:CDS |
| TCCTTGATTACAGAAACTGT+TGG | 0.563285 | 8:-26460077 | MsG0880043551.01.T01:intron |
| GCTAATGTAGCCATCAAGGA+TGG | 0.577877 | 8:-26460657 | MsG0880043551.01.T01:CDS |
| AAGGAGCAAGACTCAGCTGT+TGG | 0.579770 | 8:-26460226 | MsG0880043551.01.T01:CDS |
| TGCCATGGTCATCTCTGTAA+CGG | 0.597289 | 8:+26460193 | None:intergenic |
| AGTTCATCCTTACCTTGTTG+GGG | 0.599506 | 8:-26459684 | MsG0880043551.01.T01:CDS |
| TCAATCTTGCTTCCCCAACA+AGG | 0.603464 | 8:+26459672 | None:intergenic |
| AAGAGCCGAGAAAGATCTGA+AGG | 0.610424 | 8:-26459788 | MsG0880043551.01.T01:CDS |
| GAGAAACAGTGTTCACCTTG+AGG | 0.617004 | 8:-26459743 | MsG0880043551.01.T01:CDS |
| CCTTGGTTATGGAAATGCCA+TGG | 0.623946 | 8:+26460178 | None:intergenic |
| TGTTCACCTTGAGGATGCAG+TGG | 0.633928 | 8:-26459734 | MsG0880043551.01.T01:CDS |
| CAGCAGGTTCCAGCATCCAA+CGG | 0.637752 | 8:+26460697 | None:intergenic |
| TTATCAGGAAATTTACCAAG+AGG | 0.646965 | 8:-26460895 | MsG0880043551.01.T01:CDS |
| CTGCATCTGCAACAGCAGAG+TGG | 0.660256 | 8:+26461221 | None:intergenic |
| GTGAGCTCATTTAGATACGG+CGG | 0.666235 | 8:-26460354 | MsG0880043551.01.T01:CDS |
| TGCATCTGATGACTTTCACA+AGG | 0.672519 | 8:-26460050 | MsG0880043551.01.T01:CDS |
| CCATGGCATTTCCATAACCA+AGG | 0.680029 | 8:-26460178 | MsG0880043551.01.T01:intron |
| AAACAATTTCAATAATAACA+TGG | 0.685647 | 8:+26460622 | None:intergenic |
| CATGATGTTTAGATTCTGCG+CGG | 0.707946 | 8:-26459865 | MsG0880043551.01.T01:intron |
| AACCGTTACAGAGATGACCA+TGG | 0.726336 | 8:-26460195 | MsG0880043551.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAAAAAAATAATACA+TGG | - | Chr8:26459647-26459666 | MsG0880043551.01.T01:three_prime_UTR | 10.0% |
| !! | AAACAATTTCAATAATAACA+TGG | + | Chr8:26460134-26460153 | None:intergenic | 15.0% |
| !! | AAAGTGAAAACAAAAATAAA+TGG | + | Chr8:26460626-26460645 | None:intergenic | 15.0% |
| !! | AATAGGTTACATAAAAAAAA+AGG | + | Chr8:26459972-26459991 | None:intergenic | 15.0% |
| !! | AGGATTAAAATAAACAAATT+AGG | - | Chr8:26460298-26460317 | MsG0880043551.01.T01:CDS | 15.0% |
| !!! | TTTGTTTATTTTAATCCTTA+AGG | + | Chr8:26460296-26460315 | None:intergenic | 15.0% |
| !!! | AAAAAGGTATATGAAATTGT+TGG | + | Chr8:26459956-26459975 | None:intergenic | 20.0% |
| ! | AATAATACATGGTAACATTG+TGG | - | Chr8:26459658-26459677 | MsG0880043551.01.T01:exon | 25.0% |
| ! | ACAAATCAGAAAATCTTATC+AGG | - | Chr8:26459843-26459862 | MsG0880043551.01.T01:CDS | 25.0% |
| ! | AGGCATATATATTGTACTAA+TGG | - | Chr8:26461121-26461140 | MsG0880043551.01.T01:intron | 25.0% |
| ! | CACAAAAAATATTGATGTTG+CGG | - | Chr8:26459688-26459707 | MsG0880043551.01.T01:CDS | 25.0% |
| ! | CATGGTAAGAAAAAAAATCA+AGG | + | Chr8:26460872-26460891 | None:intergenic | 25.0% |
| ! | GGCATATATATTGTACTAAT+GGG | - | Chr8:26461122-26461141 | MsG0880043551.01.T01:intron | 25.0% |
| ! | TATAAGAATGTTTGTGAACA+TGG | + | Chr8:26460653-26460672 | None:intergenic | 25.0% |
| ! | TATATTGTACTAATGGGATT+TGG | - | Chr8:26461128-26461147 | MsG0880043551.01.T01:intron | 25.0% |
| ! | TATTCTTCATGAATCTATCA+AGG | - | Chr8:26460461-26460480 | MsG0880043551.01.T01:intron | 25.0% |
| !! | TCATTAGCTTAAGACATAAT+AGG | + | Chr8:26459989-26460008 | None:intergenic | 25.0% |
| !! | TGAATGATTTTGAATTGTGT+AGG | - | Chr8:26459757-26459776 | MsG0880043551.01.T01:CDS | 25.0% |
| !!! | AAGAGTGTTATCACAATTTT+GGG | - | Chr8:26459796-26459815 | MsG0880043551.01.T01:CDS | 25.0% |
| !!! | ATCAATATTTTTTGTGTCTG+AGG | + | Chr8:26459684-26459703 | None:intergenic | 25.0% |
| !!! | GATTATGTTTTGTTTGTTCT+TGG | - | Chr8:26460358-26460377 | MsG0880043551.01.T01:CDS | 25.0% |
| GAATCTATCAAGGAGAAAAA+AGG | - | Chr8:26460471-26460490 | MsG0880043551.01.T01:intron | 30.0% | |
| TTATCAGGAAATTTACCAAG+AGG | - | Chr8:26459858-26459877 | MsG0880043551.01.T01:intron | 30.0% | |
| ! | AGAAGATTTAATGATTTGCC+TGG | + | Chr8:26460263-26460282 | None:intergenic | 30.0% |
| ! | ATTTTGAATTGTGTAGGATG+GGG | - | Chr8:26459763-26459782 | MsG0880043551.01.T01:CDS | 30.0% |
| ! | CCTTTTCATAGTACTTCTTA+TGG | + | Chr8:26460760-26460779 | None:intergenic | 30.0% |
| ! | CTTAGCATTTTCATGTTAGT+CGG | - | Chr8:26460326-26460345 | MsG0880043551.01.T01:CDS | 30.0% |
| ! | GATTTTGAATTGTGTAGGAT+GGG | - | Chr8:26459762-26459781 | MsG0880043551.01.T01:CDS | 30.0% |
| ! | TATCATGTTTTCATGAGTCA+TGG | - | Chr8:26461200-26461219 | MsG0880043551.01.T01:CDS | 30.0% |
| ! | TCTGACTTTCAATTTGTTCA+AGG | - | Chr8:26460790-26460809 | MsG0880043551.01.T01:intron | 30.0% |
| ! | TGATTTTGAATTGTGTAGGA+TGG | - | Chr8:26459761-26459780 | MsG0880043551.01.T01:CDS | 30.0% |
| ! | TTACAAGTTTTTGTCTGAGA+CGG | + | Chr8:26460828-26460847 | None:intergenic | 30.0% |
| !! | AATTGTTTCTGTTCTTTCAC+CGG | - | Chr8:26460146-26460165 | MsG0880043551.01.T01:intron | 30.0% |
| !! | AGTCGATATTTTGAATAACG+TGG | - | Chr8:26460008-26460027 | MsG0880043551.01.T01:CDS | 30.0% |
| !! | ATATGTTGGTTTCTTTCTTG+TGG | - | Chr8:26461151-26461170 | MsG0880043551.01.T01:intron | 30.0% |
| !! | CCATAAGAAGTACTATGAAA+AGG | - | Chr8:26460757-26460776 | MsG0880043551.01.T01:intron | 30.0% |
| !!! | ACTTTTTTTCACCTTGGTTA+TGG | + | Chr8:26460589-26460608 | None:intergenic | 30.0% |
| !!! | GAAGAGTGTTATCACAATTT+TGG | - | Chr8:26459795-26459814 | MsG0880043551.01.T01:CDS | 30.0% |
| AAGTTCATCCTTACCTTGTT+GGG | - | Chr8:26461068-26461087 | MsG0880043551.01.T01:intron | 35.0% | |
| AGCAGCTAAATCTTCTTCTA+AGG | + | Chr8:26460220-26460239 | None:intergenic | 35.0% | |
| CCATTAGAATCCTTACTACA+AGG | - | Chr8:26460508-26460527 | MsG0880043551.01.T01:intron | 35.0% | |
| CCTTGTAGTAAGGATTCTAA+TGG | + | Chr8:26460511-26460530 | None:intergenic | 35.0% | |
| CTAATGGGATTTGGATATGT+TGG | - | Chr8:26461137-26461156 | MsG0880043551.01.T01:intron | 35.0% | |
| GCTCTTCAAAAAGCTTTCAA+AGG | - | Chr8:26459557-26459576 | MsG0880043551.01.T01:three_prime_UTR | 35.0% | |
| TCAGCGATTATAACCAAGAT+TGG | + | Chr8:26459729-26459748 | None:intergenic | 35.0% | |
| TCCAACAGTTTCTGTAATCA+AGG | + | Chr8:26460680-26460699 | None:intergenic | 35.0% | |
| TCCTTGATTACAGAAACTGT+TGG | - | Chr8:26460676-26460695 | MsG0880043551.01.T01:CDS | 35.0% | |
| TGAAGAAATTGCTCTTGCTA+AGG | - | Chr8:26461101-26461120 | MsG0880043551.01.T01:intron | 35.0% | |
| TGCTGAGATCAATCCAAAAT+TGG | - | Chr8:26460422-26460441 | MsG0880043551.01.T01:intron | 35.0% | |
| TTCTTTCTTGTGGTATGGTT+TGG | - | Chr8:26461161-26461180 | MsG0880043551.01.T01:intron | 35.0% | |
| TTGGTGAGCTCATTTAGATA+CGG | - | Chr8:26460396-26460415 | MsG0880043551.01.T01:intron | 35.0% | |
| TTGGTTTCTTTCTTGTGGTA+TGG | - | Chr8:26461156-26461175 | MsG0880043551.01.T01:intron | 35.0% | |
| ! | CTTCTAAGGAATGCTTGTAA+CGG | + | Chr8:26460206-26460225 | None:intergenic | 35.0% |
| ! | CTTCTACTTTCTAGTCCTTA+AGG | - | Chr8:26460278-26460297 | MsG0880043551.01.T01:CDS | 35.0% |
| ! | GCTTCAGTTTTTGCCAATTT+TGG | + | Chr8:26460438-26460457 | None:intergenic | 35.0% |
| ! | TTTTGAATTGTGTAGGATGG+GGG | - | Chr8:26459764-26459783 | MsG0880043551.01.T01:CDS | 35.0% |
| !!! | TGAGCTACTTTTTTTCACCT+TGG | + | Chr8:26460595-26460614 | None:intergenic | 35.0% |
| AGTTCATCCTTACCTTGTTG+GGG | - | Chr8:26461069-26461088 | MsG0880043551.01.T01:intron | 40.0% | |
| CAAATCGCATATGCCAATCT+TGG | - | Chr8:26459713-26459732 | MsG0880043551.01.T01:CDS | 40.0% | |
| CAAGATTGGCATATGCGATT+TGG | + | Chr8:26459715-26459734 | None:intergenic | 40.0% | |
| CATGATGTTTAGATTCTGCG+CGG | - | Chr8:26460888-26460907 | MsG0880043551.01.T01:CDS | 40.0% | |
| GAAGTTCATCCTTACCTTGT+TGG | - | Chr8:26461067-26461086 | MsG0880043551.01.T01:intron | 40.0% | |
| GATGTCCTTCAGATCTTTCT+CGG | + | Chr8:26460973-26460992 | None:intergenic | 40.0% | |
| GGATTCTAATGGCTTCTTCA+TGG | + | Chr8:26460500-26460519 | None:intergenic | 40.0% | |
| TGCATCTGATGACTTTCACA+AGG | - | Chr8:26460703-26460722 | MsG0880043551.01.T01:CDS | 40.0% | |
| TTTGGCTAATGTAGCCATCA+AGG | - | Chr8:26460092-26460111 | MsG0880043551.01.T01:intron | 40.0% | |
| ! | ACTTTTGCTTCCATCCTTGA+TGG | + | Chr8:26460109-26460128 | None:intergenic | 40.0% |
| AACCGTTACAGAGATGACCA+TGG | - | Chr8:26460558-26460577 | MsG0880043551.01.T01:intron | 45.0% | |
| AAGAGCCGAGAAAGATCTGA+AGG | - | Chr8:26460965-26460984 | MsG0880043551.01.T01:CDS | 45.0% | |
| AGGGTTGGAACTGATGAAGA+TGG | - | Chr8:26460921-26460940 | MsG0880043551.01.T01:CDS | 45.0% | |
| CACCAGAGAGTTCAGATTCA+AGG | + | Chr8:26459897-26459916 | None:intergenic | 45.0% | |
| CCATGGCATTTCCATAACCA+AGG | - | Chr8:26460575-26460594 | MsG0880043551.01.T01:intron | 45.0% | |
| CCTTGGTTATGGAAATGCCA+TGG | + | Chr8:26460578-26460597 | None:intergenic | 45.0% | |
| CGCGCAGAATCTAAACATCA+TGG | + | Chr8:26460890-26460909 | None:intergenic | 45.0% | |
| CTCATTGCCAACACTTCTTC+CGG | + | Chr8:26460168-26460187 | None:intergenic | 45.0% | |
| GAGAAACAGTGTTCACCTTG+AGG | - | Chr8:26461010-26461029 | MsG0880043551.01.T01:intron | 45.0% | |
| GAGTCTTGCTCCTTGTAGTA+AGG | + | Chr8:26460521-26460540 | None:intergenic | 45.0% | |
| GATTTAGCTGCTCATACCAC+CGG | - | Chr8:26460228-26460247 | MsG0880043551.01.T01:CDS | 45.0% | |
| GCAGTGGCAAAGGAAATTTC+AGG | - | Chr8:26461035-26461054 | MsG0880043551.01.T01:intron | 45.0% | |
| GCTAATGTAGCCATCAAGGA+TGG | - | Chr8:26460096-26460115 | MsG0880043551.01.T01:intron | 45.0% | |
| GTGAGCTCATTTAGATACGG+CGG | - | Chr8:26460399-26460418 | MsG0880043551.01.T01:intron | 45.0% | |
| TCAATCTTGCTTCCCCAACA+AGG | + | Chr8:26461084-26461103 | None:intergenic | 45.0% | |
| TGAACTCTCTGGTGACTTTG+AGG | - | Chr8:26459903-26459922 | MsG0880043551.01.T01:intron | 45.0% | |
| TGCCATGGTCATCTCTGTAA+CGG | + | Chr8:26460563-26460582 | None:intergenic | 45.0% | |
| TGTTTGTTCTTGGCAGCTGT+TGG | - | Chr8:26460368-26460387 | MsG0880043551.01.T01:CDS | 45.0% | |
| ! | GTTCAGATTCAAGGCGTTTG+AGG | + | Chr8:26459888-26459907 | None:intergenic | 45.0% |
| ! | TCTTTCACCGGAAGAAGTGT+TGG | - | Chr8:26460158-26460177 | MsG0880043551.01.T01:intron | 45.0% |
| !! | AGTGGTTGATGGGAGCAATA+AGG | + | Chr8:26459517-26459536 | None:intergenic | 45.0% |
| !! | GTGGTTGATGGGAGCAATAA+GGG | + | Chr8:26459516-26459535 | None:intergenic | 45.0% |
| AAAACAGCATCGCGATCAGC+AGG | + | Chr8:26460075-26460094 | None:intergenic | 50.0% | |
| AAGGAGCAAGACTCAGCTGT+TGG | - | Chr8:26460527-26460546 | MsG0880043551.01.T01:intron | 50.0% | |
| ATCAGAGAGCTGTGTACCGT+TGG | - | Chr8:26460040-26460059 | MsG0880043551.01.T01:CDS | 50.0% | |
| ATTTGCCTGGCGAAGATGAC+CGG | + | Chr8:26460250-26460269 | None:intergenic | 50.0% | |
| CGCCTTGAATCTGAACTCTC+TGG | - | Chr8:26459892-26459911 | MsG0880043551.01.T01:intron | 50.0% | |
| CTTGCTTCCCCAACAAGGTA+AGG | + | Chr8:26461079-26461098 | None:intergenic | 50.0% | |
| GCAACAGCAGAGTGGTTGAT+GGG | + | Chr8:26459527-26459546 | None:intergenic | 50.0% | |
| GGCGTTTGAGGATATCCTCT+TGG | + | Chr8:26459876-26459895 | None:intergenic | 50.0% | |
| TGCAACAGCAGAGTGGTTGA+TGG | + | Chr8:26459528-26459547 | None:intergenic | 50.0% | |
| TGTTCACCTTGAGGATGCAG+TGG | - | Chr8:26461019-26461038 | MsG0880043551.01.T01:intron | 50.0% | |
| TGTTCTTGGCAGCTGTTGGT+TGG | - | Chr8:26460372-26460391 | MsG0880043551.01.T01:CDS | 50.0% | |
| ! | TTGGCAGCTGTTGGTTGGAT+TGG | - | Chr8:26460377-26460396 | MsG0880043551.01.T01:intron | 50.0% |
| !! | TGCTGATCGCGATGCTGTTT+TGG | - | Chr8:26460074-26460093 | MsG0880043551.01.T01:intron | 50.0% |
| AGCTGTGTACCGTTGGATGC+TGG | - | Chr8:26460047-26460066 | MsG0880043551.01.T01:CDS | 55.0% | |
| CAGCAGGTTCCAGCATCCAA+CGG | + | Chr8:26460059-26460078 | None:intergenic | 55.0% | |
| CCTTGAGGATGCAGTGGCAA+AGG | - | Chr8:26461025-26461044 | MsG0880043551.01.T01:intron | 55.0% | |
| CCTTTGCCACTGCATCCTCA+AGG | + | Chr8:26461028-26461047 | None:intergenic | 55.0% | |
| CTGCATCTGCAACAGCAGAG+TGG | + | Chr8:26459535-26459554 | None:intergenic | 55.0% | |
| TACCACCGGTCATCTTCGCC+AGG | - | Chr8:26460242-26460261 | MsG0880043551.01.T01:CDS | 60.0% | |
| TCTGCGCGGTGCGCTGAAAA+GGG | - | Chr8:26460902-26460921 | MsG0880043551.01.T01:CDS | 60.0% | |
| TTCTGCGCGGTGCGCTGAAA+AGG | - | Chr8:26460901-26460920 | MsG0880043551.01.T01:CDS | 60.0% | |
| CGCGGTGCGCTGAAAAGGGT+TGG | - | Chr8:26460906-26460925 | MsG0880043551.01.T01:CDS | 65.0% | |
| TGCCTGGCGAAGATGACCGG+TGG | + | Chr8:26460247-26460266 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 26459506 | 26461269 | 26459506 | ID=MsG0880043551.01;Name=MsG0880043551.01 |
| Chr8 | mRNA | 26459506 | 26461269 | 26459506 | ID=MsG0880043551.01.T01;Parent=MsG0880043551.01;Name=MsG0880043551.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0.6|0.66|1|1|1|6|166|284 |
| Chr8 | exon | 26459506 | 26459875 | 26459506 | ID=MsG0880043551.01.T01:exon:10132;Parent=MsG0880043551.01.T01 |
| Chr8 | exon | 26459997 | 26460086 | 26459997 | ID=MsG0880043551.01.T01:exon:10131;Parent=MsG0880043551.01.T01 |
| Chr8 | exon | 26460179 | 26460391 | 26460179 | ID=MsG0880043551.01.T01:exon:10130;Parent=MsG0880043551.01.T01 |
| Chr8 | exon | 26460602 | 26460730 | 26460602 | ID=MsG0880043551.01.T01:exon:10129;Parent=MsG0880043551.01.T01 |
| Chr8 | exon | 26460851 | 26460996 | 26460851 | ID=MsG0880043551.01.T01:exon:10128;Parent=MsG0880043551.01.T01 |
| Chr8 | exon | 26461197 | 26461269 | 26461197 | ID=MsG0880043551.01.T01:exon:10127;Parent=MsG0880043551.01.T01 |
| Chr8 | CDS | 26461197 | 26461269 | 26461197 | ID=MsG0880043551.01.T01:cds;Parent=MsG0880043551.01.T01 |
| Chr8 | CDS | 26460851 | 26460996 | 26460851 | ID=MsG0880043551.01.T01:cds;Parent=MsG0880043551.01.T01 |
| Chr8 | CDS | 26460602 | 26460730 | 26460602 | ID=MsG0880043551.01.T01:cds;Parent=MsG0880043551.01.T01 |
| Chr8 | CDS | 26460179 | 26460391 | 26460179 | ID=MsG0880043551.01.T01:cds;Parent=MsG0880043551.01.T01 |
| Chr8 | CDS | 26459997 | 26460086 | 26459997 | ID=MsG0880043551.01.T01:cds;Parent=MsG0880043551.01.T01 |
| Chr8 | CDS | 26459672 | 26459875 | 26459672 | ID=MsG0880043551.01.T01:cds;Parent=MsG0880043551.01.T01 |
| Chr8 | three_prime_UTR | 26459506 | 26459671 | 26459506 | ID=MsG0880043551.01.T01:three_prime_utr;Parent=MsG0880043551.01.T01 |
| Gene Sequence |
| Protein sequence |
