AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013415.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013415.01.T01 MTR_3g435310 62.069 174 58 2 12 185 260 425 8.06e-70 218
MsG0380013415.01.T01 MTR_3g435310 60.417 48 18 1 1 48 59 105 1.76e-11 62.4
MsG0380013415.01.T01 MTR_2g008225 73.529 136 36 0 50 185 336 471 1.27e-68 216
MsG0380013415.01.T01 MTR_2g008225 47.191 89 27 2 1 71 56 142 9.89e-16 74.7
MsG0380013415.01.T01 MTR_2g008220 72.059 136 38 0 50 185 335 470 1.13e-66 211
MsG0380013415.01.T01 MTR_2g008220 42.149 121 59 5 1 117 55 168 1.35e-17 80.1
MsG0380013415.01.T01 MTR_4g077960 61.494 174 59 2 12 185 278 443 4.97e-66 209
MsG0380013415.01.T01 MTR_6g036650 60.920 174 60 2 12 185 311 476 5.23e-66 209
MsG0380013415.01.T01 MTR_6g036650 61.818 55 20 1 1 54 59 113 6.58e-13 66.2
MsG0380013415.01.T01 MTR_6g042310 58.621 174 64 2 12 185 304 469 9.32e-66 209
MsG0380013415.01.T01 MTR_6g042310 57.143 63 24 3 1 61 59 120 2.96e-12 64.7
MsG0380013415.01.T01 MTR_2g046620 57.471 174 66 2 12 185 302 467 1.54e-63 203
MsG0380013415.01.T01 MTR_4g123553 68.382 136 43 0 50 185 331 466 3.01e-63 202
MsG0380013415.01.T01 MTR_2g008226 59.231 130 53 0 50 179 340 469 2.61e-50 169
MsG0380013415.01.T01 MTR_7g067330 46.875 128 64 2 48 173 297 422 2.23e-32 120
MsG0380013415.01.T01 MTR_7g067120 44.531 128 67 2 48 173 297 422 4.88e-30 114
MsG0380013415.01.T01 MTR_5g066410 44.882 127 68 2 51 176 313 438 3.71e-26 103
MsG0380013415.01.T01 MTR_8g007650 44.882 127 68 2 51 176 337 462 8.80e-26 103
MsG0380013415.01.T01 MTR_8g007565 44.094 127 69 2 51 176 337 462 3.59e-25 101
MsG0380013415.01.T01 MTR_8g068360 39.844 128 77 0 49 176 336 463 7.23e-25 100
MsG0380013415.01.T01 MTR_8g068330 41.803 122 71 0 52 173 336 457 7.93e-25 100
MsG0380013415.01.T01 MTR_8g068340 40.984 122 72 0 52 173 340 461 1.41e-24 99.8
MsG0380013415.01.T01 MTR_4g059370 30.409 171 109 4 12 176 222 388 6.96e-15 72.0
MsG0380013415.01.T01 MTR_2g083430 33.858 127 80 3 50 172 324 450 9.66e-15 71.6
MsG0380013415.01.T01 MTR_1g090270 34.091 132 81 3 50 176 331 461 2.85e-14 70.5
MsG0380013415.01.T01 MTR_4g079250 30.178 169 95 5 10 172 299 450 8.00e-14 68.9
MsG0380013415.01.T01 MTR_1g090280 33.333 132 82 3 50 176 181 311 1.01e-13 68.2
MsG0380013415.01.T01 MTR_2g014900 31.250 128 85 2 49 173 322 449 1.59e-13 68.2
MsG0380013415.01.T01 MTR_4g079270 33.333 126 80 3 50 172 326 450 2.02e-13 67.8
MsG0380013415.01.T01 MTR_8g008990 33.962 106 70 0 50 155 338 443 5.21e-13 66.6
MsG0380013415.01.T01 MTR_2g083420 34.091 132 83 3 50 177 300 431 7.81e-13 66.2
MsG0380013415.01.T01 MTR_2g083390 33.077 130 83 3 52 177 302 431 1.33e-12 65.5
MsG0380013415.01.T01 MTR_8g008970 31.858 113 77 0 49 161 333 445 1.37e-12 65.5
MsG0380013415.01.T01 MTR_8g008970 31.532 111 74 2 49 158 657 766 2.60e-11 62.0
MsG0380013415.01.T01 MTR_2g083480 32.576 132 85 3 50 177 324 455 1.75e-12 65.1
MsG0380013415.01.T01 MTR_1g019520 29.452 146 99 2 11 155 45 187 1.79e-12 63.5
MsG0380013415.01.T01 MTR_2g083490 30.709 127 84 3 50 172 324 450 3.55e-12 64.3
MsG0380013415.01.T01 MTR_5g019580 31.655 139 89 4 28 164 351 485 9.05e-12 63.2
MsG0380013415.01.T01 MTR_5g019580 31.655 139 89 4 28 164 327 461 1.06e-11 62.8
MsG0380013415.01.T01 MTR_2g083380 29.323 133 90 2 50 178 341 473 1.22e-11 62.8
MsG0380013415.01.T01 MTR_8g009063 31.532 111 74 2 49 158 342 451 1.26e-11 62.8
MsG0380013415.01.T01 MTR_1g019510 26.846 149 103 2 11 157 296 440 1.85e-11 62.4
MsG0380013415.01.T01 MTR_7g102450 28.571 161 92 5 10 158 300 449 2.97e-11 61.6
MsG0380013415.01.T01 MTR_0078s0060 29.167 120 79 3 49 163 333 451 9.32e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013415.01.T01 AT5G65550 45.312 128 69 1 50 176 332 459 2.90e-34 126
MsG0380013415.01.T01 AT2G22590 40.476 126 75 0 51 176 341 466 2.78e-28 110
MsG0380013415.01.T01 AT5G49690 37.795 127 79 0 50 176 325 451 1.83e-24 99.4
MsG0380013415.01.T01 AT4G09500 32.468 154 84 4 23 173 298 434 1.43e-17 79.7
MsG0380013415.01.T01 AT4G09500 32.468 154 84 4 23 173 273 409 1.52e-17 79.7
MsG0380013415.01.T01 AT2G22930 30.864 162 92 4 23 181 298 442 1.42e-16 77.0
MsG0380013415.01.T01 AT3G29630 31.928 166 93 4 23 185 274 422 1.55e-15 73.9
MsG0380013415.01.T01 AT3G29630 31.928 166 93 4 23 185 300 448 1.69e-15 73.9
MsG0380013415.01.T01 AT4G36770 32.895 152 91 4 11 157 295 440 2.80e-14 70.5
MsG0380013415.01.T01 AT1G64910 32.738 168 104 4 12 176 276 437 1.88e-13 68.2
MsG0380013415.01.T01 AT5G53990 33.544 158 85 4 23 177 298 438 2.13e-13 67.8
MsG0380013415.01.T01 AT4G01070 33.945 109 72 0 49 157 336 444 7.18e-13 66.2
MsG0380013415.01.T01 AT1G01420 34.579 107 69 1 49 155 339 444 1.17e-12 65.9
MsG0380013415.01.T01 AT1G01420 34.579 107 69 1 49 155 336 441 1.20e-12 65.9
MsG0380013415.01.T01 AT3G50740 26.752 157 98 4 11 157 300 449 1.77e-12 65.1
MsG0380013415.01.T01 AT4G27570 31.013 158 89 4 23 177 304 444 3.03e-12 64.7
MsG0380013415.01.T01 AT1G50580 31.538 130 85 3 50 176 310 438 5.50e-12 63.9
MsG0380013415.01.T01 AT4G27560 30.380 158 90 4 23 177 304 444 1.46e-11 62.4
MsG0380013415.01.T01 AT4G15280 33.094 139 74 5 51 173 371 506 1.48e-11 62.8
MsG0380013415.01.T01 AT4G15280 33.094 139 74 5 51 173 339 474 1.56e-11 62.4
MsG0380013415.01.T01 AT5G54010 33.846 130 82 3 52 178 317 445 1.67e-11 62.4
MsG0380013415.01.T01 AT1G64920 29.012 162 89 6 23 176 298 441 8.42e-11 60.5
MsG0380013415.01.T01 AT5G26310 29.167 120 82 2 38 155 322 440 8.52e-11 60.5
MsG0380013415.01.T01 AT1G30530 31.933 119 77 2 59 176 332 447 8.84e-11 60.5
MsG0380013415.01.T01 AT5G66690 29.167 120 82 2 38 155 322 440 9.28e-11 60.1

Find 57 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTGAGATGCTTAATTT+TGG 0.120179 3:-37025956 MsG0380013415.01.T01:CDS
GATGAATGGTTCAAGGGATT+TGG 0.237877 3:+37026872 None:intergenic
ATGGTGCTCTCTGCACCTTC+TGG 0.252360 3:+37026810 None:intergenic
ATGAATGGTTCAAGGGATTT+GGG 0.258834 3:+37026873 None:intergenic
TGGTGCTCTCTGCACCTTCT+GGG 0.342067 3:+37026811 None:intergenic
CCTTGAACCATTCATCGAAT+TGG 0.351076 3:-37026865 MsG0380013415.01.T01:CDS
GCACGTTCTTGTTAACCTTC+CGG 0.377522 3:-37025933 MsG0380013415.01.T01:CDS
GGCACCTCAACGGAAGATAT+TGG 0.399583 3:-37026026 MsG0380013415.01.T01:CDS
ATATTGGCTGATGCGGCAAT+TGG 0.400336 3:-37026010 MsG0380013415.01.T01:CDS
ACCAAGACCGTGGTACTGTT+TGG 0.414414 3:-37026057 MsG0380013415.01.T01:CDS
TATTGGCTGATGCGGCAATT+GGG 0.434541 3:-37026009 MsG0380013415.01.T01:CDS
AAACCTCATGAGCCATCTTA+AGG 0.440283 3:+37026760 None:intergenic
AGCCTTACCAATTCGATGAA+TGG 0.447305 3:+37026858 None:intergenic
AGACATTGATCTAGCAAATC+CGG 0.453531 3:+37025914 None:intergenic
GCTACCTTTACCACGTATAG+AGG 0.454731 3:-37026838 MsG0380013415.01.T01:CDS
CCAATTCGATGAATGGTTCA+AGG 0.456735 3:+37026865 None:intergenic
AAAGAGATGAGCAAGGTTAT+CGG 0.468485 3:-37025746 MsG0380013415.01.T01:CDS
ATGAGCCATCTTAAGGTAAC+GGG 0.476122 3:+37026767 None:intergenic
TCCAAACAGTACCACGGTCT+TGG 0.479294 3:+37026056 None:intergenic
ATTGGCTGATGCGGCAATTG+GGG 0.492288 3:-37026008 MsG0380013415.01.T01:CDS
GGAAGATGGGTCACTTACTA+AGG 0.494569 3:-37025837 MsG0380013415.01.T01:CDS
AGAAAAGAATGTAGCTATTG+AGG 0.495755 3:-37025873 MsG0380013415.01.T01:CDS
CTTAAGGTAACGGGTGGTGT+TGG 0.496908 3:+37026776 None:intergenic
CATGAAATATGGTTAATTGT+CGG 0.499835 3:+37025655 None:intergenic
AACCATTCATCGAATTGGTA+AGG 0.501252 3:-37026860 MsG0380013415.01.T01:CDS
GACCCATCTTCCTCACTCCT+TGG 0.516746 3:+37025848 None:intergenic
CAATTCGATGAATGGTTCAA+GGG 0.533114 3:+37026866 None:intergenic
GTGGTACTGTTTGGAAAACA+TGG 0.534627 3:-37026048 MsG0380013415.01.T01:CDS
TACCAAGGAGTGAGGAAGAT+GGG 0.543111 3:-37025850 MsG0380013415.01.T01:CDS
CACCACCCGTTACCTTAAGA+TGG 0.552084 3:-37026772 MsG0380013415.01.T01:CDS
TGAATGGTTCAAGGGATTTG+GGG 0.556612 3:+37026874 None:intergenic
AGTCCCTCTATACGTGGTAA+AGG 0.557859 3:+37026834 None:intergenic
GTACCAAGGAGTGAGGAAGA+TGG 0.559085 3:-37025851 MsG0380013415.01.T01:CDS
CATGAGCCATCTTAAGGTAA+CGG 0.560449 3:+37026766 None:intergenic
TTACCTTAAGATGGCTCATG+AGG 0.575340 3:-37026763 MsG0380013415.01.T01:intron
GGAAAACATGGGCACCTCAA+CGG 0.588382 3:-37026036 MsG0380013415.01.T01:CDS
TTGGCTGATGCGGCAATTGG+GGG 0.590327 3:-37026007 MsG0380013415.01.T01:CDS
GAATGGTTCAAGGGATTTGG+GGG 0.594310 3:+37026875 None:intergenic
GGTGTTGGATGAAATGTCCA+TGG 0.595365 3:+37026791 None:intergenic
TGTAGCACAGACGTTGAGGT+TGG 0.596516 3:-37025810 MsG0380013415.01.T01:CDS
ACGGAAGATATTGGCTGATG+CGG 0.597377 3:-37026017 MsG0380013415.01.T01:CDS
CTACCTTTACCACGTATAGA+GGG 0.606446 3:-37026837 MsG0380013415.01.T01:CDS
GAGGTTGGCAATAGTTCATG+AGG 0.613513 3:-37025795 MsG0380013415.01.T01:CDS
CGTATAGAGGGACTCCCAGA+AGG 0.623773 3:-37026825 MsG0380013415.01.T01:CDS
GTTGGCAATAGTTCATGAGG+AGG 0.649153 3:-37025792 MsG0380013415.01.T01:CDS
AGAGTGTAGCACAGACGTTG+AGG 0.651979 3:-37025814 MsG0380013415.01.T01:CDS
ATGTAGCTATTGAGGTACCA+AGG 0.657055 3:-37025865 MsG0380013415.01.T01:CDS
TATTGAGGTACCAAGGAGTG+AGG 0.657416 3:-37025858 MsG0380013415.01.T01:CDS
TCAGCCAATATCTTCCGTTG+AGG 0.660112 3:+37026022 None:intergenic
TTGGCAATAGTTCATGAGGA+GGG 0.663002 3:-37025791 MsG0380013415.01.T01:CDS
AGCCATCTTAAGGTAACGGG+TGG 0.664758 3:+37026770 None:intergenic
TGGTACTGTTTGGAAAACAT+GGG 0.672461 3:-37026047 MsG0380013415.01.T01:CDS
ATTGATCTAGCAAATCCGGA+AGG 0.695349 3:+37025918 None:intergenic
CAACGCAAAAGAGATGAGCA+AGG 0.695920 3:-37025753 MsG0380013415.01.T01:CDS
AGAAGGTGCAGAGAGCACCA+TGG 0.698198 3:-37026808 MsG0380013415.01.T01:CDS
TCTGGGAGTCCCTCTATACG+TGG 0.724806 3:+37026828 None:intergenic
TGAGGATAGAACCAAGACCG+TGG 0.759347 3:-37026067 MsG0380013415.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTAAAAAATCTAAAAGA+GGG - Chr3:37026439-37026458 MsG0380013415.01.T01:intron 15.0%
!! AGTTGATTATAATCAAAATC+AGG + Chr3:37026117-37026136 None:intergenic 20.0%
!!! GTCTTTAAAAAATCTAAAAG+AGG - Chr3:37026438-37026457 MsG0380013415.01.T01:intron 20.0%
!!! TTTTTTAAAGACCAAAAGAA+AGG + Chr3:37026430-37026449 None:intergenic 20.0%
! AATGCTCTAATAATCTCATA+AGG + Chr3:37026064-37026083 None:intergenic 25.0%
! ATAAGTCAAGCCAAATTTAA+CGG - Chr3:37025979-37025998 MsG0380013415.01.T01:CDS 25.0%
!! GTTTTCTATGATATTACAAG+TGG - Chr3:37025864-37025883 MsG0380013415.01.T01:CDS 25.0%
!! TCATTGAGATGCTTAATTTT+GGG - Chr3:37026597-37026616 MsG0380013415.01.T01:intron 25.0%
!!! AGATGAATAGTTGTTTTGAA+AGG + Chr3:37026037-37026056 None:intergenic 25.0%
AAAATTCATCAAAGCCTGAT+TGG - Chr3:37025841-37025860 MsG0380013415.01.T01:CDS 30.0%
AAATTCATCAAAGCCTGATT+GGG - Chr3:37025842-37025861 MsG0380013415.01.T01:CDS 30.0%
AGAAAAGAATGTAGCTATTG+AGG - Chr3:37026679-37026698 MsG0380013415.01.T01:intron 30.0%
ATATCATAGAAAACCCAATC+AGG + Chr3:37025858-37025877 None:intergenic 30.0%
CTAATTCAGTTAGATCTTGT+TGG + Chr3:37026382-37026401 None:intergenic 30.0%
CTATGATATTACAAGTGGTT+GGG - Chr3:37025869-37025888 MsG0380013415.01.T01:CDS 30.0%
TCTATGATATTACAAGTGGT+TGG - Chr3:37025868-37025887 MsG0380013415.01.T01:CDS 30.0%
TGAATTACCATATGGATTTG+AGG - Chr3:37026467-37026486 MsG0380013415.01.T01:intron 30.0%
! GTCATTGAGATGCTTAATTT+TGG - Chr3:37026596-37026615 MsG0380013415.01.T01:intron 30.0%
! TTCAACATCTCTTATTTGCA+GGG + Chr3:37026255-37026274 None:intergenic 30.0%
!!! GTTTTGAAAGGAAGCAAATT+TGG + Chr3:37026025-37026044 None:intergenic 30.0%
AAAGAGATGAGCAAGGTTAT+CGG - Chr3:37026806-37026825 MsG0380013415.01.T01:CDS 35.0%
AACCATTCATCGAATTGGTA+AGG - Chr3:37025692-37025711 MsG0380013415.01.T01:CDS 35.0%
AGACATTGATCTAGCAAATC+CGG + Chr3:37026641-37026660 None:intergenic 35.0%
AGATCTAACTGAATTAGCTC+TGG - Chr3:37026385-37026404 MsG0380013415.01.T01:intron 35.0%
ATCTGTTCTGTTCATAGGAT+TGG - Chr3:37026337-37026356 MsG0380013415.01.T01:intron 35.0%
ATGAAGAAAACAACCCTGAT+TGG - Chr3:37026276-37026295 MsG0380013415.01.T01:intron 35.0%
ATGAATGGTTCAAGGGATTT+GGG + Chr3:37025682-37025701 None:intergenic 35.0%
ATTGGGTGAAAATCAAGACA+TGG - Chr3:37026294-37026313 MsG0380013415.01.T01:intron 35.0%
CAATTCGATGAATGGTTCAA+GGG + Chr3:37025689-37025708 None:intergenic 35.0%
GGGTACATTGAATTACCATA+TGG - Chr3:37026459-37026478 MsG0380013415.01.T01:intron 35.0%
GTGAAAATCAAGACATGGTT+GGG - Chr3:37026299-37026318 MsG0380013415.01.T01:intron 35.0%
GTTCTATCCTCAAATCCATA+TGG + Chr3:37026477-37026496 None:intergenic 35.0%
TATGTTCTTTGATCCACCTA+AGG - Chr3:37025956-37025975 MsG0380013415.01.T01:CDS 35.0%
TCTGTTCTGTTCATAGGATT+GGG - Chr3:37026338-37026357 MsG0380013415.01.T01:intron 35.0%
TGAAGAAAACAACCCTGATT+GGG - Chr3:37026277-37026296 MsG0380013415.01.T01:intron 35.0%
TGGTACTGTTTGGAAAACAT+GGG - Chr3:37026505-37026524 MsG0380013415.01.T01:intron 35.0%
TTGAAAGGAAGCAAATTTGG+TGG + Chr3:37026022-37026041 None:intergenic 35.0%
! ATGTTTTCCAAACAGTACCA+CGG + Chr3:37026505-37026524 None:intergenic 35.0%
! CTTCAACATCTCTTATTTGC+AGG + Chr3:37026256-37026275 None:intergenic 35.0%
! GTTATCTGGTAAAAAGCACA+CGG + Chr3:37025922-37025941 None:intergenic 35.0%
! TCTTGATTTTCACCCAATCA+GGG + Chr3:37026292-37026311 None:intergenic 35.0%
! TTTCTGGGTTACCTTTCTTT+TGG - Chr3:37026416-37026435 MsG0380013415.01.T01:intron 35.0%
!! ATTTGGCTTGACTTATCCTT+AGG + Chr3:37025975-37025994 None:intergenic 35.0%
AAACCTCATGAGCCATCTTA+AGG + Chr3:37025795-37025814 None:intergenic 40.0%
AAAGAACATATGCTCCAAGC+TGG + Chr3:37025946-37025965 None:intergenic 40.0%
AAGAACATATGCTCCAAGCT+GGG + Chr3:37025945-37025964 None:intergenic 40.0%
AGCCTTACCAATTCGATGAA+TGG + Chr3:37025697-37025716 None:intergenic 40.0%
AGTCAAGCCAAATTTAACGG+CGG - Chr3:37025982-37026001 MsG0380013415.01.T01:CDS 40.0%
ATGAGCCATCTTAAGGTAAC+GGG + Chr3:37025788-37025807 None:intergenic 40.0%
ATGTCTTCCGCCGTTAAATT+TGG + Chr3:37025992-37026011 None:intergenic 40.0%
ATTGATCTAGCAAATCCGGA+AGG + Chr3:37026637-37026656 None:intergenic 40.0%
CATGAGCCATCTTAAGGTAA+CGG + Chr3:37025789-37025808 None:intergenic 40.0%
CCAATTCGATGAATGGTTCA+AGG + Chr3:37025690-37025709 None:intergenic 40.0%
CCATCATCTGTTCTGTTCAT+AGG - Chr3:37026332-37026351 MsG0380013415.01.T01:intron 40.0%
CCTATGAACAGAACAGATGA+TGG + Chr3:37026335-37026354 None:intergenic 40.0%
CCTTGAACCATTCATCGAAT+TGG - Chr3:37025687-37025706 MsG0380013415.01.T01:CDS 40.0%
CTACCTTTACCACGTATAGA+GGG - Chr3:37025715-37025734 MsG0380013415.01.T01:CDS 40.0%
GATGAATGGTTCAAGGGATT+TGG + Chr3:37025683-37025702 None:intergenic 40.0%
GGTGAAAATCAAGACATGGT+TGG - Chr3:37026298-37026317 MsG0380013415.01.T01:intron 40.0%
GTGGTACTGTTTGGAAAACA+TGG - Chr3:37026504-37026523 MsG0380013415.01.T01:intron 40.0%
TGAATGGTTCAAGGGATTTG+GGG + Chr3:37025681-37025700 None:intergenic 40.0%
TTACCTTAAGATGGCTCATG+AGG - Chr3:37025789-37025808 MsG0380013415.01.T01:CDS 40.0%
TTGGCAATAGTTCATGAGGA+GGG - Chr3:37026761-37026780 MsG0380013415.01.T01:intron 40.0%
! ACATCTCTTATTTGCAGGGA+TGG + Chr3:37026251-37026270 None:intergenic 40.0%
! ATGTAGCTATTGAGGTACCA+AGG - Chr3:37026687-37026706 MsG0380013415.01.T01:intron 40.0%
! GTCTTGATTTTCACCCAATC+AGG + Chr3:37026293-37026312 None:intergenic 40.0%
! TAAAAAGCACACGGATGTTG+AGG + Chr3:37025913-37025932 None:intergenic 40.0%
! TAAGACCTCTAGAGAACTTG+AGG - Chr3:37026163-37026182 MsG0380013415.01.T01:intron 40.0%
AGAACATATGCTCCAAGCTG+GGG + Chr3:37025944-37025963 None:intergenic 45.0%
AGTCCCTCTATACGTGGTAA+AGG + Chr3:37025721-37025740 None:intergenic 45.0%
CAACGCAAAAGAGATGAGCA+AGG - Chr3:37026799-37026818 MsG0380013415.01.T01:CDS 45.0%
CTAGAGAACTTGAGGCAGAA+TGG - Chr3:37026171-37026190 MsG0380013415.01.T01:intron 45.0%
CTCAGCTCTTAAAGACGAGT+CGG - Chr3:37026084-37026103 MsG0380013415.01.T01:intron 45.0%
GAATGGTTCAAGGGATTTGG+GGG + Chr3:37025680-37025699 None:intergenic 45.0%
GAGGTTGGCAATAGTTCATG+AGG - Chr3:37026757-37026776 MsG0380013415.01.T01:intron 45.0%
GCACGTTCTTGTTAACCTTC+CGG - Chr3:37026619-37026638 MsG0380013415.01.T01:intron 45.0%
GCTACCTTTACCACGTATAG+AGG - Chr3:37025714-37025733 MsG0380013415.01.T01:CDS 45.0%
GGAAGATGGGTCACTTACTA+AGG - Chr3:37026715-37026734 MsG0380013415.01.T01:intron 45.0%
GTTGGCAATAGTTCATGAGG+AGG - Chr3:37026760-37026779 MsG0380013415.01.T01:intron 45.0%
TACCAAGGAGTGAGGAAGAT+GGG - Chr3:37026702-37026721 MsG0380013415.01.T01:intron 45.0%
TCAGCCAATATCTTCCGTTG+AGG + Chr3:37026533-37026552 None:intergenic 45.0%
TCAGCTCTTAAAGACGAGTC+GGG - Chr3:37026085-37026104 MsG0380013415.01.T01:intron 45.0%
TGGCTTGACTTATCCTTAGG+TGG + Chr3:37025972-37025991 None:intergenic 45.0%
TTAACGGCGGAAGACATTTG+TGG - Chr3:37025995-37026014 MsG0380013415.01.T01:CDS 45.0%
TTCTGCCTCAAGTTCTCTAG+AGG + Chr3:37026171-37026190 None:intergenic 45.0%
TTTACCAGATAACCCCAGCT+TGG - Chr3:37025929-37025948 MsG0380013415.01.T01:CDS 45.0%
! ACGGAAGATATTGGCTGATG+CGG - Chr3:37026535-37026554 MsG0380013415.01.T01:intron 45.0%
! ATATTGGCTGATGCGGCAAT+TGG - Chr3:37026542-37026561 MsG0380013415.01.T01:intron 45.0%
! GATGTTGAGGCTTTGGCTAT+TGG + Chr3:37025900-37025919 None:intergenic 45.0%
! GGTGTTGGATGAAATGTCCA+TGG + Chr3:37025764-37025783 None:intergenic 45.0%
! TAGATCTTGTTGGCTAAGCC+TGG + Chr3:37026372-37026391 None:intergenic 45.0%
! TATTGAGGTACCAAGGAGTG+AGG - Chr3:37026694-37026713 MsG0380013415.01.T01:intron 45.0%
! TATTGGCTGATGCGGCAATT+GGG - Chr3:37026543-37026562 MsG0380013415.01.T01:intron 45.0%
! TCAAGGGATTTGGGGGTTTT+GGG + Chr3:37025673-37025692 None:intergenic 45.0%
! TCTCTTATTTGCAGGGATGG+TGG + Chr3:37026248-37026267 None:intergenic 45.0%
! TTCAAGGGATTTGGGGGTTT+TGG + Chr3:37025674-37025693 None:intergenic 45.0%
ACCAAGACCGTGGTACTGTT+TGG - Chr3:37026495-37026514 MsG0380013415.01.T01:intron 50.0%
AGAGTGTAGCACAGACGTTG+AGG - Chr3:37026738-37026757 MsG0380013415.01.T01:intron 50.0%
ATTGGCTGATGCGGCAATTG+GGG - Chr3:37026544-37026563 MsG0380013415.01.T01:intron 50.0%
CACCACCCGTTACCTTAAGA+TGG - Chr3:37025780-37025799 MsG0380013415.01.T01:CDS 50.0%
CTCTTACATGAACGTGCCTG+TGG - Chr3:37026205-37026224 MsG0380013415.01.T01:intron 50.0%
GGAAAACATGGGCACCTCAA+CGG - Chr3:37026516-37026535 MsG0380013415.01.T01:intron 50.0%
GGCACCTCAACGGAAGATAT+TGG - Chr3:37026526-37026545 MsG0380013415.01.T01:intron 50.0%
GGGGGTTGCATTTGTCATTG+TGG - Chr3:37026563-37026582 MsG0380013415.01.T01:intron 50.0%
GTACCAAGGAGTGAGGAAGA+TGG - Chr3:37026701-37026720 MsG0380013415.01.T01:intron 50.0%
TCCAAACAGTACCACGGTCT+TGG + Chr3:37026499-37026518 None:intergenic 50.0%
TGAGGATAGAACCAAGACCG+TGG - Chr3:37026485-37026504 MsG0380013415.01.T01:intron 50.0%
TGTAGCACAGACGTTGAGGT+TGG - Chr3:37026742-37026761 MsG0380013415.01.T01:intron 50.0%
!! AGCCATCTTAAGGTAACGGG+TGG + Chr3:37025785-37025804 None:intergenic 50.0%
!! AGCTCTGGAATCGAGCTTTC+TGG - Chr3:37026400-37026419 MsG0380013415.01.T01:intron 50.0%
!! CTTAAGGTAACGGGTGGTGT+TGG + Chr3:37025779-37025798 None:intergenic 50.0%
!! GCTCTGGAATCGAGCTTTCT+GGG - Chr3:37026401-37026420 MsG0380013415.01.T01:intron 50.0%
AACGTGCCTGTGGTTCCAGT+GGG - Chr3:37026215-37026234 MsG0380013415.01.T01:intron 55.0%
ATGGTGCTCTCTGCACCTTC+TGG + Chr3:37025745-37025764 None:intergenic 55.0%
CGTATAGAGGGACTCCCAGA+AGG - Chr3:37025727-37025746 MsG0380013415.01.T01:CDS 55.0%
GACCCATCTTCCTCACTCCT+TGG + Chr3:37026707-37026726 None:intergenic 55.0%
GCACACGGATGTTGAGGCTT+TGG + Chr3:37025907-37025926 None:intergenic 55.0%
TCTGGGAGTCCCTCTATACG+TGG + Chr3:37025727-37025746 None:intergenic 55.0%
TGCTCCAAGCTGGGGTTATC+TGG + Chr3:37025936-37025955 None:intergenic 55.0%
TGGTGCTCTCTGCACCTTCT+GGG + Chr3:37025744-37025763 None:intergenic 55.0%
TTGGCTGATGCGGCAATTGG+GGG - Chr3:37026545-37026564 MsG0380013415.01.T01:intron 55.0%
!! AGAAGGTGCAGAGAGCACCA+TGG - Chr3:37025744-37025763 MsG0380013415.01.T01:CDS 55.0%
ACGTGCCTGTGGTTCCAGTG+GGG - Chr3:37026216-37026235 MsG0380013415.01.T01:intron 60.0%
AGCAACCCCACTGGAACCAC+AGG + Chr3:37026224-37026243 None:intergenic 60.0%
GAACGTGCCTGTGGTTCCAG+TGG - Chr3:37026214-37026233 MsG0380013415.01.T01:intron 60.0%
TAGGATTGGGCAGCGAGTCC+AGG - Chr3:37026351-37026370 MsG0380013415.01.T01:intron 60.0%
!! GATGGTGGAAGCAACCCCAC+TGG + Chr3:37026233-37026252 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 37025667 37026907 37025667 ID=MsG0380013415.01;Name=MsG0380013415.01
Chr3 mRNA 37025667 37026907 37025667 ID=MsG0380013415.01.T01;Parent=MsG0380013415.01;Name=MsG0380013415.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|185
Chr3 exon 37026764 37026907 37026764 ID=MsG0380013415.01.T01:exon:8269;Parent=MsG0380013415.01.T01
Chr3 exon 37025667 37026080 37025667 ID=MsG0380013415.01.T01:exon:8268;Parent=MsG0380013415.01.T01
Chr3 CDS 37026764 37026907 37026764 ID=MsG0380013415.01.T01:cds;Parent=MsG0380013415.01.T01
Chr3 CDS 37025667 37026080 37025667 ID=MsG0380013415.01.T01:cds;Parent=MsG0380013415.01.T01
Gene Sequence

>MsG0380013415.01.T01

ATGCCCAAAACCCCCAAATCCCTTGAACCATTCATCGAATTGGTAAGGCTACCTTTACCACGTATAGAGGGACTCCCAGAAGGTGCAGAGAGCACCATGGACATTTCATCCAACACCACCCGTTACCTTAAGATGGCTCATGAGAACCAAGACCGTGGTACTGTTTGGAAAACATGGGCACCTCAACGGAAGATATTGGCTGATGCGGCAATTGGGGGTTGCATTTGTCATTGTGGTGCAAGTTCTGTCATTGAGATGCTTAATTTTGGGCACGTTCTTGTTAACCTTCCGGATTTGCTAGATCAATGTCTGTTTTCAAGAGCACTAGTAGAAAAGAATGTAGCTATTGAGGTACCAAGGAGTGAGGAAGATGGGTCACTTACTAAGGAGAGTGTAGCACAGACGTTGAGGTTGGCAATAGTTCATGAGGAGGGAAGTACTTATAGAAACAACGCAAAAGAGATGAGCAAGGTTATCGGTTCAAAAGATCTTCACAATCAGTACATTGAAGATTTCATTGCGATTCTTCATAAGTATAGAGTTCATTCCGACAATTAA

Protein sequence

>MsG0380013415.01.T01

MPKTPKSLEPFIELVRLPLPRIEGLPEGAESTMDISSNTTRYLKMAHENQDRGTVWKTWAPQRKILADAAIGGCICHCGASSVIEMLNFGHVLVNLPDLLDQCLFSRALVEKNVAIEVPRSEEDGSLTKESVAQTLRLAIVHEEGSTYRNNAKEMSKVIGSKDLHNQYIEDFIAILHKYRVHSDN*