AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014029.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014029.01.T01 MTR_4g051290 99.717 353 1 0 1 353 1 353 0.0 712
MsG0380014029.01.T01 MTR_7g021750 99.433 353 2 0 1 353 1 353 0.0 711
MsG0380014029.01.T01 MTR_0002s0380 98.300 353 6 0 1 353 1 353 0.0 706
MsG0380014029.01.T01 MTR_7g017540 57.556 311 37 4 37 347 1 216 7.25e-104 305
MsG0380014029.01.T01 MTR_1g057280 88.710 124 14 0 4 127 1 124 1.56e-75 229
MsG0380014029.01.T01 MTR_4g050770 91.597 119 10 0 1 119 1 119 5.91e-73 223
MsG0380014029.01.T01 MTR_2g089580 93.860 114 7 0 1 114 1 114 6.19e-71 217
MsG0380014029.01.T01 MTR_3g088450 98.020 101 2 0 253 353 14 114 2.02e-65 202
MsG0380014029.01.T01 MTR_4g006190 64.384 146 11 2 37 182 1 105 2.53e-48 159
MsG0380014029.01.T01 MTR_0002s0420 30.293 307 201 7 1 302 1 299 1.77e-39 149
MsG0380014029.01.T01 MTR_4g073360 29.391 279 187 5 25 300 8 279 7.40e-36 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014029.01.T01 ATCG00020 99.150 353 3 0 1 353 1 353 0.0 710
MsG0380014029.01.T01 ATCG00270 30.872 298 195 6 8 302 10 299 5.26e-43 152

Find 96 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTTATGATTGTATTTC+AGG 0.094964 3:+48687335 MsG0380014029.01.T01:CDS
TACGGAAACAATATTATTTC+TGG 0.148897 3:+48687012 MsG0380014029.01.T01:CDS
GGTATTCGTGAGCCTGTTTC+TGG 0.153797 3:+48686979 MsG0380014029.01.T01:CDS
ACTATGGCTTTCAACTTAAA+TGG 0.204485 3:+48687669 MsG0380014029.01.T01:CDS
GTAGCGGCTCATGGTTATTT+TGG 0.211941 3:+48687540 MsG0380014029.01.T01:CDS
ATGAGCCGCTACAATATTAT+AGG 0.272473 3:-48687529 None:intergenic
CTTGGCCTGTAGTAGGTATC+TGG 0.286287 3:+48687625 MsG0380014029.01.T01:CDS
AACCGTGCATAGCACTAAAT+AGG 0.289873 3:-48687422 None:intergenic
GTTTCTGGATCTCTACTTTA+CGG 0.304376 3:+48686994 MsG0380014029.01.T01:CDS
TATGGGGTCGCTTCTGTAAC+TGG 0.325492 3:+48686833 MsG0380014029.01.T01:CDS
GTCGAGGCTCCATCTATAAA+TGG 0.328108 3:+48687831 MsG0380014029.01.T01:CDS
ATGCATCCATTTCACATGTT+AGG 0.334267 3:+48687375 MsG0380014029.01.T01:CDS
GAAAAGCTTCCTTGACCAAT+TGG 0.357543 3:-48687279 None:intergenic
ACGGATGCAGCTTCCCATAT+CGG 0.367380 3:-48687078 None:intergenic
AATTGTTGAAACTAGCATAT+TGG 0.372196 3:-48687575 None:intergenic
CGTCTTTACATTGGATGGTT+TGG 0.372317 3:+48686874 MsG0380014029.01.T01:CDS
TGGTAACTTCTAGTTTGATC+AGG 0.373357 3:+48687448 MsG0380014029.01.T01:CDS
TACAGAAGTTGCGGTCAATA+AGG 0.375984 3:-48686914 None:intergenic
CGCATTAGGTATCAGCACTA+TGG 0.383333 3:+48687653 MsG0380014029.01.T01:CDS
GGTATCTGGTTTACCGCATT+AGG 0.389981 3:+48687639 MsG0380014029.01.T01:CDS
TACATTTCTTCCTAGCTGCT+TGG 0.392937 3:+48687607 MsG0380014029.01.T01:CDS
AAATATTATCCATTTATAGA+TGG 0.399782 3:-48687840 None:intergenic
GACGCGATAGCGAAAACCTA+TGG 0.411483 3:+48686815 MsG0380014029.01.T01:CDS
TTAGGTGTAGCTGGTGTATT+CGG 0.411606 3:+48687393 MsG0380014029.01.T01:CDS
TTCGTCTGGGTATGCGCCCT+TGG 0.418396 3:+48687199 MsG0380014029.01.T01:CDS
CTTGACTATCAACTACTGAT+TGG 0.426567 3:-48687704 None:intergenic
TGTAGAACAATTAGTTCATA+AGG 0.437646 3:-48687126 None:intergenic
ACTTGGTGTAGCTTGTTACA+TGG 0.437779 3:+48687155 MsG0380014029.01.T01:CDS
CTAGCTGCTTGGCCTGTAGT+AGG 0.440325 3:+48687618 MsG0380014029.01.T01:CDS
TAAAGTAGAGATCCAGAAAC+AGG 0.442058 3:-48686991 None:intergenic
CGAATACCATCAATATCTAC+TGG 0.444826 3:-48686964 None:intergenic
ACTGCAGTAGCAGCTGCAAC+AGG 0.445711 3:-48687243 None:intergenic
GCTACACCTAACATGTGAAA+TGG 0.452322 3:-48687381 None:intergenic
AGCCGCAGAAGTAGGAATAA+TGG 0.453817 3:-48687037 None:intergenic
AAAAGCTTCCTTGACCAATT+GGG 0.461317 3:-48687278 None:intergenic
TTTCACATGTTAGGTGTAGC+TGG 0.469077 3:+48687384 MsG0380014029.01.T01:CDS
GGTATGCCTCTAGGAATCTC+TGG 0.470401 3:+48687306 MsG0380014029.01.T01:CDS
GCTAATGAAGGTTACAGATT+CGG 0.475758 3:+48687492 MsG0380014029.01.T01:CDS
CGGATGCAGCTTCCCATATC+GGG 0.477757 3:-48687077 None:intergenic
GCCCCTCCAGTAGATATTGA+TGG 0.479743 3:+48686958 MsG0380014029.01.T01:CDS
ATTCCTACTTCTGCGGCTAT+CGG 0.479971 3:+48687042 MsG0380014029.01.T01:CDS
ATTGTTCTACACTTCTTACT+TGG 0.483390 3:+48687138 MsG0380014029.01.T01:CDS
ACGCGATAGCGAAAACCTAT+GGG 0.487730 3:+48686816 MsG0380014029.01.T01:CDS
TAGTGCTATGCACGGTTCCT+TGG 0.490089 3:+48687428 MsG0380014029.01.T01:CDS
GAAAATGAATCTGCTAATGA+AGG 0.504633 3:+48687480 MsG0380014029.01.T01:CDS
AAAACCGTCTTTACATTGGA+TGG 0.504784 3:+48686869 MsG0380014029.01.T01:CDS
TAACCGTGCTAACCTTGGTA+TGG 0.506629 3:+48687758 MsG0380014029.01.T01:CDS
TAGCATATTGGAAGATCAAT+CGG 0.506638 3:-48687563 None:intergenic
ACCGTGCATAGCACTAAATA+GGG 0.508247 3:-48687421 None:intergenic
TATAATATTGTAGCGGCTCA+TGG 0.516941 3:+48687531 MsG0380014029.01.T01:CDS
CTTGGTGTAGCTTGTTACAT+GGG 0.524751 3:+48687156 MsG0380014029.01.T01:CDS
TCTAGACCTAGCTGCGGTCG+AGG 0.526199 3:+48687815 MsG0380014029.01.T01:CDS
ATTATTAACCGTGCTAACCT+TGG 0.526840 3:+48687753 MsG0380014029.01.T01:CDS
GAAGTTGCGGTCAATAAGGT+AGG 0.528902 3:-48686910 None:intergenic
GGTAACTTCTAGTTTGATCA+GGG 0.532589 3:+48687449 MsG0380014029.01.T01:CDS
TCCCTATTTAGTGCTATGCA+CGG 0.549758 3:+48687420 MsG0380014029.01.T01:CDS
CTTGTTACATGGGCCGTGAG+TGG 0.554386 3:+48687166 MsG0380014029.01.T01:CDS
TCTCTCTAAAATTGCAGTCA+TGG 0.558841 3:-48686794 None:intergenic
GAATATGCAACAGCAATCCA+AGG 0.563142 3:-48687216 None:intergenic
ACGGTTAATAATATCAGCCC+AGG 0.563451 3:-48687742 None:intergenic
GATAATAAATACAGAAGTTG+CGG 0.566120 3:-48686923 None:intergenic
TTGATCTACCCAATTGGTCA+AGG 0.568683 3:+48687270 MsG0380014029.01.T01:CDS
ATGGAGCCTCGACCGCAGCT+AGG 0.572338 3:-48687821 None:intergenic
TACCATCAATATCTACTGGA+GGG 0.577447 3:-48686960 None:intergenic
AAACCGATAGCCGCAGAAGT+AGG 0.579727 3:-48687045 None:intergenic
CTACTACAGGCCAAGCAGCT+AGG 0.580380 3:-48687617 None:intergenic
ACTGAAAACCGTCTTTACAT+TGG 0.581643 3:+48686865 MsG0380014029.01.T01:CDS
TGCCATTATTCCTACTTCTG+CGG 0.582467 3:+48687035 MsG0380014029.01.T01:CDS
TTGTTACATGGGCCGTGAGT+GGG 0.586497 3:+48687167 MsG0380014029.01.T01:CDS
CTTCCATACCAAGGTTAGCA+CGG 0.587709 3:-48687761 None:intergenic
CGACCGCAGCTAGGTCTAGA+GGG 0.588594 3:-48687812 None:intergenic
ACCATCAATATCTACTGGAG+GGG 0.588944 3:-48686959 None:intergenic
AAGGTCGTGTAATTAACACC+TGG 0.599282 3:+48687724 MsG0380014029.01.T01:CDS
AAGCTGCATCCGTTGATGAA+TGG 0.600941 3:+48687088 MsG0380014029.01.T01:CDS
TCGACCGCAGCTAGGTCTAG+AGG 0.608941 3:-48687813 None:intergenic
GTAAACCAGATACCTACTAC+AGG 0.609077 3:-48687630 None:intergenic
AAGTTGCGGTCAATAAGGTA+GGG 0.623830 3:-48686909 None:intergenic
AGGTTACAGATTCGGTCAAG+AGG 0.630458 3:+48687500 MsG0380014029.01.T01:CDS
AGTTACAGAAGCGACCCCAT+AGG 0.631772 3:-48686831 None:intergenic
AATATGCAACAGCAATCCAA+GGG 0.635044 3:-48687215 None:intergenic
GGTGTAGCTGGTGTATTCGG+CGG 0.636664 3:+48687396 MsG0380014029.01.T01:CDS
ATACCATCAATATCTACTGG+AGG 0.642954 3:-48686961 None:intergenic
CAAACCATCCAATGTAAAGA+CGG 0.643551 3:-48686873 None:intergenic
GTTGTATAACCATTCATCAA+CGG 0.643975 3:-48687097 None:intergenic
CGCGATAGCGAAAACCTATG+GGG 0.644401 3:+48686817 MsG0380014029.01.T01:CDS
CAATCAGTAGTTGATAGTCA+AGG 0.648342 3:+48687705 MsG0380014029.01.T01:CDS
AGGTCGTGTAATTAACACCT+GGG 0.648561 3:+48687725 MsG0380014029.01.T01:CDS
CATGCATAACTTCCATACCA+AGG 0.650999 3:-48687770 None:intergenic
GAAAACTAAGTTCCCACTCA+CGG 0.656600 3:-48687179 None:intergenic
GATCAAACTAGAAGTTACCA+AGG 0.656817 3:-48687445 None:intergenic
AGAAACCTATAATATTGTAG+CGG 0.673114 3:+48687524 MsG0380014029.01.T01:CDS
CATAGTGCTGATACCTAATG+CGG 0.691049 3:-48687652 None:intergenic
GTTGATGAATGGTTATACAA+CGG 0.701598 3:+48687099 MsG0380014029.01.T01:CDS
GATGAATGGTTATACAACGG+TGG 0.713327 3:+48687102 MsG0380014029.01.T01:CDS
AAAGTACCAGAGATTCCTAG+AGG 0.716307 3:-48687312 None:intergenic
CTTCCCTCTAGACCTAGCTG+CGG 0.753269 3:+48687809 MsG0380014029.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTGTTGAAACTAGCATAT+TGG - Chr3:48687578-48687597 None:intergenic 25.0%
! AGAAACCTATAATATTGTAG+CGG + Chr3:48687524-48687543 MsG0380014029.01.T01:CDS 25.0%
! CAACTTTATGATTGTATTTC+AGG + Chr3:48687335-48687354 MsG0380014029.01.T01:CDS 25.0%
! GATAATAAATACAGAAGTTG+CGG - Chr3:48686926-48686945 None:intergenic 25.0%
! TACGGAAACAATATTATTTC+TGG + Chr3:48687012-48687031 MsG0380014029.01.T01:CDS 25.0%
! TGTAGAACAATTAGTTCATA+AGG - Chr3:48687129-48687148 None:intergenic 25.0%
ACTATGGCTTTCAACTTAAA+TGG + Chr3:48687669-48687688 MsG0380014029.01.T01:CDS 30.0%
ATTGTTCTACACTTCTTACT+TGG + Chr3:48687138-48687157 MsG0380014029.01.T01:CDS 30.0%
GAAAATGAATCTGCTAATGA+AGG + Chr3:48687480-48687499 MsG0380014029.01.T01:CDS 30.0%
GTTGTATAACCATTCATCAA+CGG - Chr3:48687100-48687119 None:intergenic 30.0%
TAGCATATTGGAAGATCAAT+CGG - Chr3:48687566-48687585 None:intergenic 30.0%
! ATTAGCAGATTCATTTTCTG+TGG - Chr3:48687478-48687497 None:intergenic 30.0%
! GTTGATGAATGGTTATACAA+CGG + Chr3:48687099-48687118 MsG0380014029.01.T01:CDS 30.0%
AAAACCGTCTTTACATTGGA+TGG + Chr3:48686869-48686888 MsG0380014029.01.T01:CDS 35.0%
AAAAGCTTCCTTGACCAATT+GGG - Chr3:48687281-48687300 None:intergenic 35.0%
AATATGCAACAGCAATCCAA+GGG - Chr3:48687218-48687237 None:intergenic 35.0%
ACTGAAAACCGTCTTTACAT+TGG + Chr3:48686865-48686884 MsG0380014029.01.T01:CDS 35.0%
ATACCATCAATATCTACTGG+AGG - Chr3:48686964-48686983 None:intergenic 35.0%
ATGAGCCGCTACAATATTAT+AGG - Chr3:48687532-48687551 None:intergenic 35.0%
ATGCATCCATTTCACATGTT+AGG + Chr3:48687375-48687394 MsG0380014029.01.T01:CDS 35.0%
ATTATTAACCGTGCTAACCT+TGG + Chr3:48687753-48687772 MsG0380014029.01.T01:CDS 35.0%
CAAACCATCCAATGTAAAGA+CGG - Chr3:48686876-48686895 None:intergenic 35.0%
CGAATACCATCAATATCTAC+TGG - Chr3:48686967-48686986 None:intergenic 35.0%
CTTGACTATCAACTACTGAT+TGG - Chr3:48687707-48687726 None:intergenic 35.0%
GATCAAACTAGAAGTTACCA+AGG - Chr3:48687448-48687467 None:intergenic 35.0%
GCTAATGAAGGTTACAGATT+CGG + Chr3:48687492-48687511 MsG0380014029.01.T01:CDS 35.0%
TAAAGTAGAGATCCAGAAAC+AGG - Chr3:48686994-48687013 None:intergenic 35.0%
TACCATCAATATCTACTGGA+GGG - Chr3:48686963-48686982 None:intergenic 35.0%
TATAATATTGTAGCGGCTCA+TGG + Chr3:48687531-48687550 MsG0380014029.01.T01:CDS 35.0%
! GTTTCTGGATCTCTACTTTA+CGG + Chr3:48686994-48687013 MsG0380014029.01.T01:CDS 35.0%
! GTTTTCTTGATCTACCCAAT+TGG + Chr3:48687264-48687283 MsG0380014029.01.T01:CDS 35.0%
! TTTGCACTTTTACCCGATAT+GGG + Chr3:48687065-48687084 MsG0380014029.01.T01:CDS 35.0%
!! CAATCAGTAGTTGATAGTCA+AGG + Chr3:48687705-48687724 MsG0380014029.01.T01:CDS 35.0%
!! GGTAACTTCTAGTTTGATCA+GGG + Chr3:48687449-48687468 MsG0380014029.01.T01:CDS 35.0%
!! TGGTAACTTCTAGTTTGATC+AGG + Chr3:48687448-48687467 MsG0380014029.01.T01:CDS 35.0%
AACCGTGCATAGCACTAAAT+AGG - Chr3:48687425-48687444 None:intergenic 40.0%
AAGGTCGTGTAATTAACACC+TGG + Chr3:48687724-48687743 MsG0380014029.01.T01:CDS 40.0%
AAGTTGCGGTCAATAAGGTA+GGG - Chr3:48686912-48686931 None:intergenic 40.0%
ACCATCAATATCTACTGGAG+GGG - Chr3:48686962-48686981 None:intergenic 40.0%
ACCGTGCATAGCACTAAATA+GGG - Chr3:48687424-48687443 None:intergenic 40.0%
ACGGTTAATAATATCAGCCC+AGG - Chr3:48687745-48687764 None:intergenic 40.0%
AGGTCGTGTAATTAACACCT+GGG + Chr3:48687725-48687744 MsG0380014029.01.T01:CDS 40.0%
CATGCATAACTTCCATACCA+AGG - Chr3:48687773-48687792 None:intergenic 40.0%
CGTCTTTACATTGGATGGTT+TGG + Chr3:48686874-48686893 MsG0380014029.01.T01:CDS 40.0%
GAAAACTAAGTTCCCACTCA+CGG - Chr3:48687182-48687201 None:intergenic 40.0%
GAAAAGCTTCCTTGACCAAT+TGG - Chr3:48687282-48687301 None:intergenic 40.0%
GAATATGCAACAGCAATCCA+AGG - Chr3:48687219-48687238 None:intergenic 40.0%
GATGAATGGTTATACAACGG+TGG + Chr3:48687102-48687121 MsG0380014029.01.T01:CDS 40.0%
GCTACACCTAACATGTGAAA+TGG - Chr3:48687384-48687403 None:intergenic 40.0%
GTAAACCAGATACCTACTAC+AGG - Chr3:48687633-48687652 None:intergenic 40.0%
TACAGAAGTTGCGGTCAATA+AGG - Chr3:48686917-48686936 None:intergenic 40.0%
TACATTTCTTCCTAGCTGCT+TGG + Chr3:48687607-48687626 MsG0380014029.01.T01:CDS 40.0%
TCCCTATTTAGTGCTATGCA+CGG + Chr3:48687420-48687439 MsG0380014029.01.T01:CDS 40.0%
TGCCATTATTCCTACTTCTG+CGG + Chr3:48687035-48687054 MsG0380014029.01.T01:CDS 40.0%
TTAGGTGTAGCTGGTGTATT+CGG + Chr3:48687393-48687412 MsG0380014029.01.T01:CDS 40.0%
TTGATCTACCCAATTGGTCA+AGG + Chr3:48687270-48687289 MsG0380014029.01.T01:CDS 40.0%
TTTCACATGTTAGGTGTAGC+TGG + Chr3:48687384-48687403 MsG0380014029.01.T01:CDS 40.0%
! AAAGTACCAGAGATTCCTAG+AGG - Chr3:48687315-48687334 None:intergenic 40.0%
! GTTTGCACTTTTACCCGATA+TGG + Chr3:48687064-48687083 MsG0380014029.01.T01:CDS 40.0%
! TTTTCAGATGGTATGCCTCT+AGG + Chr3:48687297-48687316 MsG0380014029.01.T01:CDS 40.0%
!! ACTTGGTGTAGCTTGTTACA+TGG + Chr3:48687155-48687174 MsG0380014029.01.T01:CDS 40.0%
!! CATAGTGCTGATACCTAATG+CGG - Chr3:48687655-48687674 None:intergenic 40.0%
!! CTTGGTGTAGCTTGTTACAT+GGG + Chr3:48687156-48687175 MsG0380014029.01.T01:CDS 40.0%
!! TGGGAACTTAGTTTTCGTCT+GGG + Chr3:48687186-48687205 MsG0380014029.01.T01:CDS 40.0%
ACGCGATAGCGAAAACCTAT+GGG + Chr3:48686816-48686835 MsG0380014029.01.T01:CDS 45.0%
AGCCGCAGAAGTAGGAATAA+TGG - Chr3:48687040-48687059 None:intergenic 45.0%
ATTCCTACTTCTGCGGCTAT+CGG + Chr3:48687042-48687061 MsG0380014029.01.T01:CDS 45.0%
CGCATTAGGTATCAGCACTA+TGG + Chr3:48687653-48687672 MsG0380014029.01.T01:CDS 45.0%
CTTCCATACCAAGGTTAGCA+CGG - Chr3:48687764-48687783 None:intergenic 45.0%
GAAGTTGCGGTCAATAAGGT+AGG - Chr3:48686913-48686932 None:intergenic 45.0%
GTCGAGGCTCCATCTATAAA+TGG + Chr3:48687831-48687850 MsG0380014029.01.T01:CDS 45.0%
TAACCGTGCTAACCTTGGTA+TGG + Chr3:48687758-48687777 MsG0380014029.01.T01:CDS 45.0%
! AAGCTGCATCCGTTGATGAA+TGG + Chr3:48687088-48687107 MsG0380014029.01.T01:CDS 45.0%
! AGGTTACAGATTCGGTCAAG+AGG + Chr3:48687500-48687519 MsG0380014029.01.T01:CDS 45.0%
! GGTATCTGGTTTACCGCATT+AGG + Chr3:48687639-48687658 MsG0380014029.01.T01:CDS 45.0%
! GGTCAAGGAAGCTTTTCAGA+TGG + Chr3:48687285-48687304 MsG0380014029.01.T01:CDS 45.0%
! GTAAAGACGGTTTTCAGTGC+TGG - Chr3:48686863-48686882 None:intergenic 45.0%
! GTAGCGGCTCATGGTTATTT+TGG + Chr3:48687540-48687559 MsG0380014029.01.T01:CDS 45.0%
!! GTGGGAACTTAGTTTTCGTC+TGG + Chr3:48687185-48687204 MsG0380014029.01.T01:CDS 45.0%
AAACCGATAGCCGCAGAAGT+AGG - Chr3:48687048-48687067 None:intergenic 50.0%
ACGGATGCAGCTTCCCATAT+CGG - Chr3:48687081-48687100 None:intergenic 50.0%
AGTTACAGAAGCGACCCCAT+AGG - Chr3:48686834-48686853 None:intergenic 50.0%
CGCGATAGCGAAAACCTATG+GGG + Chr3:48686817-48686836 MsG0380014029.01.T01:CDS 50.0%
CTTGGCCTGTAGTAGGTATC+TGG + Chr3:48687625-48687644 MsG0380014029.01.T01:CDS 50.0%
GACGCGATAGCGAAAACCTA+TGG + Chr3:48686815-48686834 MsG0380014029.01.T01:CDS 50.0%
GCCCCTCCAGTAGATATTGA+TGG + Chr3:48686958-48686977 MsG0380014029.01.T01:CDS 50.0%
GGTATTCGTGAGCCTGTTTC+TGG + Chr3:48686979-48686998 MsG0380014029.01.T01:CDS 50.0%
TAGTGCTATGCACGGTTCCT+TGG + Chr3:48687428-48687447 MsG0380014029.01.T01:CDS 50.0%
TATGGGGTCGCTTCTGTAAC+TGG + Chr3:48686833-48686852 MsG0380014029.01.T01:CDS 50.0%
TTGTTACATGGGCCGTGAGT+GGG + Chr3:48687167-48687186 MsG0380014029.01.T01:CDS 50.0%
! GGTATGCCTCTAGGAATCTC+TGG + Chr3:48687306-48687325 MsG0380014029.01.T01:CDS 50.0%
ACTGCAGTAGCAGCTGCAAC+AGG - Chr3:48687246-48687265 None:intergenic 55.0%
CGGATGCAGCTTCCCATATC+GGG - Chr3:48687080-48687099 None:intergenic 55.0%
CTACTACAGGCCAAGCAGCT+AGG - Chr3:48687620-48687639 None:intergenic 55.0%
CTAGCTGCTTGGCCTGTAGT+AGG + Chr3:48687618-48687637 MsG0380014029.01.T01:CDS 55.0%
CTTCCCTCTAGACCTAGCTG+CGG + Chr3:48687809-48687828 MsG0380014029.01.T01:CDS 55.0%
CTTGTTACATGGGCCGTGAG+TGG + Chr3:48687166-48687185 MsG0380014029.01.T01:CDS 55.0%
GGTGTAGCTGGTGTATTCGG+CGG + Chr3:48687396-48687415 MsG0380014029.01.T01:CDS 55.0%
CGACCGCAGCTAGGTCTAGA+GGG - Chr3:48687815-48687834 None:intergenic 60.0%
TCGACCGCAGCTAGGTCTAG+AGG - Chr3:48687816-48687835 None:intergenic 60.0%
TCTAGACCTAGCTGCGGTCG+AGG + Chr3:48687815-48687834 MsG0380014029.01.T01:CDS 60.0%
TTCGTCTGGGTATGCGCCCT+TGG + Chr3:48687199-48687218 MsG0380014029.01.T01:CDS 60.0%
ATGGAGCCTCGACCGCAGCT+AGG - Chr3:48687824-48687843 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48686796 48687857 48686796 ID=MsG0380014029.01;Name=MsG0380014029.01
Chr3 mRNA 48686796 48687857 48686796 ID=MsG0380014029.01.T01;Parent=MsG0380014029.01;Name=MsG0380014029.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|353
Chr3 exon 48686796 48687857 48686796 ID=MsG0380014029.01.T01:exon:56800;Parent=MsG0380014029.01.T01
Chr3 CDS 48686796 48687857 48686796 ID=MsG0380014029.01.T01:cds;Parent=MsG0380014029.01.T01
Gene Sequence

>MsG0380014029.01.T01

ATGACTGCAATTTTAGAGAGACGCGATAGCGAAAACCTATGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGCCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCGGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCATTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTTAACCAATCAGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCGGTCGAGGCTCCATCTATAAATGGATAA

Protein sequence

>MsG0380014029.01.T01

MTAILERRDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING*