AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013928.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013928.01.T01 MTR_4g051290 93.391 348 2 1 273 599 6 353 0.0 666
MsG0380013928.01.T01 MTR_7g021750 93.103 348 3 1 273 599 6 353 0.0 664
MsG0380013928.01.T01 MTR_0002s0380 91.954 348 7 1 273 599 6 353 0.0 660
MsG0380013928.01.T01 MTR_7g017540 60.554 289 40 5 304 592 1 215 1.62e-100 305
MsG0380013928.01.T01 MTR_1g057280 90.984 122 11 0 273 394 3 124 9.57e-75 235
MsG0380013928.01.T01 MTR_4g050770 90.351 114 11 0 273 386 6 119 7.29e-67 214
MsG0380013928.01.T01 MTR_2g089580 92.661 109 8 0 273 381 6 114 1.21e-64 208
MsG0380013928.01.T01 MTR_3g088450 98.020 101 2 0 499 599 14 114 2.21e-64 207
MsG0380013928.01.T01 MTR_4g050863 45.878 279 114 5 1 258 39 301 9.09e-48 169
MsG0380013928.01.T01 MTR_4g006190 64.384 146 11 2 304 449 1 105 3.63e-47 161
MsG0380013928.01.T01 MTR_0002s0420 29.032 310 175 8 262 548 12 299 2.15e-30 127
MsG0380013928.01.T01 MTR_4g073360 29.818 275 164 8 295 546 11 279 2.52e-28 115
MsG0380013928.01.T01 MTR_4g071480 78.462 65 8 1 37 101 1 59 2.11e-24 101
MsG0380013928.01.T01 MTR_3g077610 90.909 44 4 0 1 44 39 82 4.78e-20 85.9
MsG0380013928.01.T01 MTR_4g034770 53.704 108 33 4 177 279 12 107 1.27e-17 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013928.01.T01 ATCG00020 92.816 348 4 1 273 599 6 353 0.0 664
MsG0380013928.01.T01 ATCG00270 29.964 277 165 6 295 548 29 299 4.72e-33 130

Find 124 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTTATGATTGTATTTC+AGG 0.094964 3:+48447511 MsG0380013928.01.T01:CDS
TCTCGATTTCACTACTATTT+TGG 0.110779 3:-48446212 None:intergenic
TACGGAAACAATATTATTTC+TGG 0.148897 3:+48447188 MsG0380013928.01.T01:CDS
GGTATTCGTGAGCCTGTTTC+TGG 0.153797 3:+48447155 MsG0380013928.01.T01:CDS
TCAATTCAATGATGTTTAAT+AGG 0.172116 3:+48445668 None:intergenic
ACTATGGCTTTCAACTTAAA+TGG 0.204485 3:+48447844 MsG0380013928.01.T01:CDS
GTAGCGGCTCATGGTTATTT+TGG 0.211941 3:+48447715 MsG0380013928.01.T01:CDS
AGTTCATCTTCCGAACTATT+TGG 0.221678 3:-48446583 None:intergenic
ATCATTGCTATCATCGAAAA+TGG 0.246021 3:-48446007 None:intergenic
CTAAAATGTAACTAGCCTTT+TGG 0.259078 3:-48446116 None:intergenic
GATATTATTCCAATTATATA+TGG 0.263222 3:-48445932 None:intergenic
TCCATATCAGTTAAAATAGA+TGG 0.266329 3:-48445769 None:intergenic
ATGAGCCGCTACAATATTAT+AGG 0.272473 3:-48447704 None:intergenic
ATAGTTATTCCATATATAAT+TGG 0.282228 3:+48445923 MsG0380013928.01.T01:CDS
CAATTCAATGATGTTTAATA+GGG 0.284928 3:+48445669 None:intergenic
CTTGGCCTGTAGTAGGTATC+TGG 0.286287 3:+48447800 MsG0380013928.01.T01:CDS
GTTTCTGGATCTCTACTTTA+CGG 0.304376 3:+48447170 MsG0380013928.01.T01:CDS
TATGGGGTCGCTTCTGTAAC+TGG 0.325492 3:+48447009 MsG0380013928.01.T01:CDS
GTCGAGGCTCCATCTATAAA+TGG 0.328108 3:+48448006 MsG0380013928.01.T01:CDS
ATGCATCCATTTCACATGTT+AGG 0.334267 3:+48447551 MsG0380013928.01.T01:CDS
ATCATTAATAGTTGTATTGA+AGG 0.345443 3:+48445952 MsG0380013928.01.T01:CDS
GAAAAGCTTCCTTGACCAAT+TGG 0.357543 3:-48447455 None:intergenic
AGTAAATCAATAGACAGTTT+TGG 0.359068 3:+48445715 MsG0380013928.01.T01:CDS
ACGGATGCAGCTTCCCATAT+CGG 0.367380 3:-48447254 None:intergenic
GTCTTCCGAATTAAATTCAA+TGG 0.370040 3:-48446458 None:intergenic
AATTGTTGAAACTAGCATAT+TGG 0.372196 3:-48447750 None:intergenic
CGTCTTTACATTGGATGGTT+TGG 0.372317 3:+48447050 MsG0380013928.01.T01:CDS
TACAGAAGTTGCGGTCAATA+AGG 0.375984 3:-48447090 None:intergenic
ATGATTATTTAGTAGATGTC+AGG 0.378156 3:+48445812 MsG0380013928.01.T01:CDS
GGTTATCTTCGTTCTGAAAT+CGG 0.381009 3:+48445973 MsG0380013928.01.T01:CDS
CGCATTAGGTATCAGCACTA+TGG 0.383333 3:+48447828 MsG0380013928.01.T01:CDS
GGTATCTGGTTTACCGCATT+AGG 0.389981 3:+48447814 MsG0380013928.01.T01:CDS
TACATTTCTTCCTAGCTGCT+TGG 0.392937 3:+48447782 MsG0380013928.01.T01:CDS
TTAATAGGGGTTTAGAATAC+AGG 0.397527 3:+48445683 MsG0380013928.01.T01:CDS
AAATATTATCCATTTATAGA+TGG 0.399782 3:-48448015 None:intergenic
GACGCGATAGCGAAAACCTA+TGG 0.411483 3:+48446991 MsG0380013928.01.T01:CDS
GGATCCCATTGAATTTAATT+CGG 0.414293 3:+48446453 MsG0380013928.01.T01:CDS
TTCGTCTGGGTATGCGCCCT+TGG 0.418396 3:+48447375 MsG0380013928.01.T01:CDS
ACAAATACAATGATAGTGAT+TGG 0.419651 3:+48446052 MsG0380013928.01.T01:CDS
TAGGAAATTCCGTATGTTCA+TGG 0.422353 3:-48445869 None:intergenic
CTTGACTATCAACTACTGAT+TGG 0.426567 3:-48447879 None:intergenic
ACTTGGTGTAGCTTGTTACA+TGG 0.436838 3:+48447331 MsG0380013928.01.T01:CDS
TGTAGAACAATTAGTTCATA+AGG 0.437646 3:-48447302 None:intergenic
CTAGCTGCTTGGCCTGTAGT+AGG 0.440325 3:+48447793 MsG0380013928.01.T01:CDS
TAAAGTAGAGATCCAGAAAC+AGG 0.442058 3:-48447167 None:intergenic
CGAATACCATCAATATCTAC+TGG 0.444826 3:-48447140 None:intergenic
ACTGCAGTAGCAGCTGCAAC+AGG 0.445711 3:-48447419 None:intergenic
GCTACACCTAACATGTGAAA+TGG 0.452322 3:-48447557 None:intergenic
AGCCGCAGAAGTAGGAATAA+TGG 0.453817 3:-48447213 None:intergenic
AAAAGCTTCCTTGACCAATT+GGG 0.461317 3:-48447454 None:intergenic
TTTCACATGTTAGGTGTAGC+TGG 0.469077 3:+48447560 MsG0380013928.01.T01:CDS
GGTATGCCTCTAGGAATCTC+TGG 0.470401 3:+48447482 MsG0380013928.01.T01:CDS
TCTTCCGAATTAAATTCAAT+GGG 0.472920 3:-48446457 None:intergenic
GCTAATGAAGGTTACAGATT+CGG 0.475758 3:+48447667 MsG0380013928.01.T01:CDS
CGGATGCAGCTTCCCATATC+GGG 0.477757 3:-48447253 None:intergenic
GCCCCTCCAGTAGATATTGA+TGG 0.479743 3:+48447134 MsG0380013928.01.T01:CDS
ATTCCTACTTCTGCGGCTAT+CGG 0.479971 3:+48447218 MsG0380013928.01.T01:CDS
TGAACTCTCTGAAAATAGTT+CGG 0.480083 3:+48446600 MsG0380013928.01.T01:CDS
ATTGTTCTACACTTCTTACT+TGG 0.483390 3:+48447314 MsG0380013928.01.T01:CDS
TATTTAGTAGATGTCAGGGT+TGG 0.484894 3:+48445817 MsG0380013928.01.T01:CDS
ACGCGATAGCGAAAACCTAT+GGG 0.487730 3:+48446992 MsG0380013928.01.T01:CDS
TGATTCTTATCCAAATAGTT+CGG 0.490233 3:+48446573 MsG0380013928.01.T01:CDS
TCCAGGTACTTGGAATCCTA+TGG 0.498677 3:+48446411 MsG0380013928.01.T01:intron
CGAACCTTCTGAAAATAGTT+CGG 0.500353 3:+48446627 MsG0380013928.01.T01:CDS
TAGTTCTTATCAAAATAGTT+CGG 0.502636 3:+48446531 MsG0380013928.01.T01:CDS
GAAAATGAATCTGCTAATGA+AGG 0.504633 3:+48447655 MsG0380013928.01.T01:CDS
AAAACCGTCTTTACATTGGA+TGG 0.504784 3:+48447045 MsG0380013928.01.T01:CDS
TAACCGTGCTAACCTTGGTA+TGG 0.506629 3:+48447933 MsG0380013928.01.T01:CDS
TAGCATATTGGAAGATCAAT+CGG 0.506638 3:-48447738 None:intergenic
CAAATACAATGATAGTGATT+GGG 0.514193 3:+48446053 MsG0380013928.01.T01:CDS
TATAATATTGTAGCGGCTCA+TGG 0.516941 3:+48447706 MsG0380013928.01.T01:CDS
CTTGGTGTAGCTTGTTACAT+GGG 0.525076 3:+48447332 MsG0380013928.01.T01:CDS
TCTAGACCTAGCTGCGGTCG+AGG 0.526199 3:+48447990 MsG0380013928.01.T01:CDS
ATTATTAACCGTGCTAACCT+TGG 0.526840 3:+48447928 MsG0380013928.01.T01:CDS
GAAGTTGCGGTCAATAAGGT+AGG 0.528902 3:-48447086 None:intergenic
TAGTTATAGCCATGAACATA+CGG 0.548429 3:+48445860 MsG0380013928.01.T01:CDS
TAGTGGCAATGATAGTGATA+AGG 0.552635 3:+48446188 MsG0380013928.01.T01:CDS
TGATTATTTAGTAGATGTCA+GGG 0.554876 3:+48445813 MsG0380013928.01.T01:CDS
GAATATGCAACAGCAATCCA+AGG 0.563142 3:-48447392 None:intergenic
ACGGTTAATAATATCAGCCC+AGG 0.563451 3:-48447917 None:intergenic
GATAATAAATACAGAAGTTG+CGG 0.566120 3:-48447099 None:intergenic
CCATATCAGTTAAAATAGAT+GGG 0.566449 3:-48445768 None:intergenic
TTGATCTACCCAATTGGTCA+AGG 0.568683 3:+48447446 MsG0380013928.01.T01:CDS
ATGGAGCCTCGACCGCAGCT+AGG 0.572338 3:-48447996 None:intergenic
TACCATCAATATCTACTGGA+GGG 0.577447 3:-48447136 None:intergenic
TTGTTACATGGGTCGTGAGT+GGG 0.579018 3:+48447343 MsG0380013928.01.T01:CDS
AAACCGATAGCCGCAGAAGT+AGG 0.579727 3:-48447221 None:intergenic
GAGACCATGTCTTCATCCAT+AGG 0.580226 3:-48446427 None:intergenic
CTACTACAGGCCAAGCAGCT+AGG 0.580380 3:-48447792 None:intergenic
ACTGAAAACCGTCTTTACAT+TGG 0.581643 3:+48447041 MsG0380013928.01.T01:CDS
TGCCATTATTCCTACTTCTG+CGG 0.582467 3:+48447211 MsG0380013928.01.T01:CDS
TGATTATGATAAGCTCCAAA+AGG 0.584378 3:+48446101 MsG0380013928.01.T01:CDS
CTTCCATACCAAGGTTAGCA+CGG 0.587709 3:-48447936 None:intergenic
AATTCAATGATGTTTAATAG+GGG 0.588438 3:+48445670 None:intergenic
CGACCGCAGCTAGGTCTAGA+GGG 0.588594 3:-48447987 None:intergenic
GATGATAGTGGCAATGATAG+TGG 0.588786 3:+48446171 MsG0380013928.01.T01:CDS
ACCATCAATATCTACTGGAG+GGG 0.588944 3:-48447135 None:intergenic
CTTGTTACATGGGTCGTGAG+TGG 0.590459 3:+48447342 MsG0380013928.01.T01:CDS
GAATCCTATGGATGAAGACA+TGG 0.596325 3:+48446423 MsG0380013928.01.T01:CDS
AGTGATTGGGACAATGATAG+TGG 0.597015 3:+48446066 MsG0380013928.01.T01:CDS
AAGGTCGTGTAATTAACACC+TGG 0.599282 3:+48447899 MsG0380013928.01.T01:CDS
AAGCTGCATCCGTTGATGAA+TGG 0.600941 3:+48447264 MsG0380013928.01.T01:CDS
TCGACCGCAGCTAGGTCTAG+AGG 0.608941 3:-48447988 None:intergenic
GTAAACCAGATACCTACTAC+AGG 0.609077 3:-48447805 None:intergenic
AAGTTGCGGTCAATAAGGTA+GGG 0.623830 3:-48447085 None:intergenic
GGATGAAGACATGGTCTCTG+TGG 0.626356 3:+48446432 MsG0380013928.01.T01:CDS
AGGTTACAGATTCGGTCAAG+AGG 0.630458 3:+48447675 MsG0380013928.01.T01:CDS
AGTTACAGAAGCGACCCCAT+AGG 0.631772 3:-48447007 None:intergenic
AATATGCAACAGCAATCCAA+GGG 0.635044 3:-48447391 None:intergenic
ATACCATCAATATCTACTGG+AGG 0.642954 3:-48447137 None:intergenic
CAAACCATCCAATGTAAAGA+CGG 0.643551 3:-48447049 None:intergenic
GTTGTATAACCATTCATCAA+CGG 0.643975 3:-48447273 None:intergenic
CGCGATAGCGAAAACCTATG+GGG 0.644401 3:+48446993 MsG0380013928.01.T01:CDS
CAATCAGTAGTTGATAGTCA+AGG 0.648342 3:+48447880 MsG0380013928.01.T01:CDS
AGGTCGTGTAATTAACACCT+GGG 0.648561 3:+48447900 MsG0380013928.01.T01:CDS
CATGCATAACTTCCATACCA+AGG 0.650999 3:-48447945 None:intergenic
AGGGGTTTAGAATACAGGTG+TGG 0.652609 3:+48445688 MsG0380013928.01.T01:CDS
ACTGATAGTGATGATGATAG+TGG 0.658064 3:+48446159 MsG0380013928.01.T01:CDS
AGAAACCTATAATATTGTAG+CGG 0.673114 3:+48447699 MsG0380013928.01.T01:CDS
CATAGTGCTGATACCTAATG+CGG 0.691049 3:-48447827 None:intergenic
GTTGATGAATGGTTATACAA+CGG 0.701598 3:+48447275 MsG0380013928.01.T01:CDS
GATGAATGGTTATACAACGG+TGG 0.713327 3:+48447278 MsG0380013928.01.T01:CDS
AAAGTACCAGAGATTCCTAG+AGG 0.716307 3:-48447488 None:intergenic
CTTCCCTCTAGACCTAGCTG+CGG 0.753269 3:+48447984 MsG0380013928.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAGTATTTTTTTTTTTTTT+TGG + Chr3:48446745-48446764 MsG0380013928.01.T01:intron 10.0%
!! ATAGTTATTCCATATATAAT+TGG + Chr3:48445923-48445942 MsG0380013928.01.T01:CDS 15.0%
!! GATATTATTCCAATTATATA+TGG - Chr3:48445935-48445954 None:intergenic 15.0%
!!! TGATAAAACTTTTTTAGTTA+GGG + Chr3:48445894-48445913 MsG0380013928.01.T01:CDS 15.0%
!!! TTTTTTTTTTTTTGGATGAA+TGG + Chr3:48446753-48446772 MsG0380013928.01.T01:intron 15.0%
!! AAATACTTCATATGTATAGA+TGG - Chr3:48446734-48446753 None:intergenic 20.0%
!! AATACTTCATATGTATAGAT+GGG - Chr3:48446733-48446752 None:intergenic 20.0%
!! ATCATTAATAGTTGTATTGA+AGG + Chr3:48445952-48445971 MsG0380013928.01.T01:CDS 20.0%
!! CTCTATAAGTATAGAATTAA+GGG - Chr3:48446895-48446914 None:intergenic 20.0%
!! TAGTATAATAACTATCACAA+AGG + Chr3:48446239-48446258 MsG0380013928.01.T01:intron 20.0%
!! TAGTTCTTATCAAAATAGTT+CGG + Chr3:48446531-48446550 MsG0380013928.01.T01:CDS 20.0%
!! TCTCTATAAGTATAGAATTA+AGG - Chr3:48446896-48446915 None:intergenic 20.0%
!!! CTAAAAAAGTTTTATCAGAT+AGG - Chr3:48445891-48445910 None:intergenic 20.0%
!!! CTGATAAAACTTTTTTAGTT+AGG + Chr3:48445893-48445912 MsG0380013928.01.T01:CDS 20.0%
!!! TTTACACTGTTATTTTCAAT+AGG - Chr3:48445742-48445761 None:intergenic 20.0%
! AAGAATATTTGTGAATACTG+TGG + Chr3:48446340-48446359 MsG0380013928.01.T01:intron 25.0%
! AATTGTTGAAACTAGCATAT+TGG - Chr3:48447753-48447772 None:intergenic 25.0%
! AGAAACCTATAATATTGTAG+CGG + Chr3:48447699-48447718 MsG0380013928.01.T01:CDS 25.0%
! ATGATTATTTAGTAGATGTC+AGG + Chr3:48445812-48445831 MsG0380013928.01.T01:CDS 25.0%
! CAACTTTATGATTGTATTTC+AGG + Chr3:48447511-48447530 MsG0380013928.01.T01:CDS 25.0%
! CCATATCAGTTAAAATAGAT+GGG - Chr3:48445771-48445790 None:intergenic 25.0%
! GATAATAAATACAGAAGTTG+CGG - Chr3:48447102-48447121 None:intergenic 25.0%
! GATACAATGGATATTGATAT+TGG + Chr3:48446826-48446845 MsG0380013928.01.T01:intron 25.0%
! GTATAACATGACTTATATAC+CGG - Chr3:48446858-48446877 None:intergenic 25.0%
! TACGGAAACAATATTATTTC+TGG + Chr3:48447188-48447207 MsG0380013928.01.T01:CDS 25.0%
! TCCATATCAGTTAAAATAGA+TGG - Chr3:48445772-48445791 None:intergenic 25.0%
! TCTTCCGAATTAAATTCAAT+GGG - Chr3:48446460-48446479 None:intergenic 25.0%
! TGATTATTTAGTAGATGTCA+GGG + Chr3:48445813-48445832 MsG0380013928.01.T01:CDS 25.0%
! TGATTCTTATCCAAATAGTT+CGG + Chr3:48446573-48446592 MsG0380013928.01.T01:CDS 25.0%
! TGTAGAACAATTAGTTCATA+AGG - Chr3:48447305-48447324 None:intergenic 25.0%
!! ACAAATACAATGATAGTGAT+TGG + Chr3:48446052-48446071 MsG0380013928.01.T01:CDS 25.0%
!! ACAAATGATTTTTCGCATTT+GGG + Chr3:48446264-48446283 MsG0380013928.01.T01:intron 25.0%
!! AGTAAATCAATAGACAGTTT+TGG + Chr3:48445715-48445734 MsG0380013928.01.T01:CDS 25.0%
!! CAAATACAATGATAGTGATT+GGG + Chr3:48446053-48446072 MsG0380013928.01.T01:CDS 25.0%
!! TACAAATGATTTTTCGCATT+TGG + Chr3:48446263-48446282 MsG0380013928.01.T01:intron 25.0%
!! TGATAATCATCATTTTCAGA+AGG - Chr3:48446688-48446707 None:intergenic 25.0%
ACTATGGCTTTCAACTTAAA+TGG + Chr3:48447844-48447863 MsG0380013928.01.T01:CDS 30.0%
AGATGAATAACAGGATACAA+TGG + Chr3:48446813-48446832 MsG0380013928.01.T01:intron 30.0%
ATATGTATAGATGGGAAAGT+AGG - Chr3:48446725-48446744 None:intergenic 30.0%
ATCATTGCTATCATCGAAAA+TGG - Chr3:48446010-48446029 None:intergenic 30.0%
ATTGTTCTACACTTCTTACT+TGG + Chr3:48447314-48447333 MsG0380013928.01.T01:CDS 30.0%
GAAAATGAATCTGCTAATGA+AGG + Chr3:48447655-48447674 MsG0380013928.01.T01:CDS 30.0%
GGATCCCATTGAATTTAATT+CGG + Chr3:48446453-48446472 MsG0380013928.01.T01:CDS 30.0%
GGTGAAATGAGGTAAAAAAA+AGG + Chr3:48446774-48446793 MsG0380013928.01.T01:intron 30.0%
GTCTTCCGAATTAAATTCAA+TGG - Chr3:48446461-48446480 None:intergenic 30.0%
GTTGTATAACCATTCATCAA+CGG - Chr3:48447276-48447295 None:intergenic 30.0%
TAGCATATTGGAAGATCAAT+CGG - Chr3:48447741-48447760 None:intergenic 30.0%
TAGTTATAGCCATGAACATA+CGG + Chr3:48445860-48445879 MsG0380013928.01.T01:CDS 30.0%
TGATTATGATAAGCTCCAAA+AGG + Chr3:48446101-48446120 MsG0380013928.01.T01:CDS 30.0%
TGTCAATCTAGATGAATAAC+AGG + Chr3:48446804-48446823 MsG0380013928.01.T01:intron 30.0%
! ATATTGATATTGGTTGACAC+CGG + Chr3:48446836-48446855 MsG0380013928.01.T01:intron 30.0%
! ATTAGCAGATTCATTTTCTG+TGG - Chr3:48447653-48447672 None:intergenic 30.0%
! GAATCAAGACTATTTTCAGA+AGG - Chr3:48446487-48446506 None:intergenic 30.0%
! GGATAAGAATCATTTTCAGA+AGG - Chr3:48446565-48446584 None:intergenic 30.0%
! GTTGATGAATGGTTATACAA+CGG + Chr3:48447275-48447294 MsG0380013928.01.T01:CDS 30.0%
! TCTCGATTTCACTACTATTT+TGG - Chr3:48446215-48446234 None:intergenic 30.0%
! TGAACTCTCTGAAAATAGTT+CGG + Chr3:48446600-48446619 MsG0380013928.01.T01:CDS 30.0%
! TTAATAGGGGTTTAGAATAC+AGG + Chr3:48445683-48445702 MsG0380013928.01.T01:CDS 30.0%
!!! CCCATCTATTTTAACTGATA+TGG + Chr3:48445768-48445787 MsG0380013928.01.T01:CDS 30.0%
!!! CTAAAATGTAACTAGCCTTT+TGG - Chr3:48446119-48446138 None:intergenic 30.0%
AAAACCGTCTTTACATTGGA+TGG + Chr3:48447045-48447064 MsG0380013928.01.T01:CDS 35.0%
AAAAGCTTCCTTGACCAATT+GGG - Chr3:48447457-48447476 None:intergenic 35.0%
AATATGCAACAGCAATCCAA+GGG - Chr3:48447394-48447413 None:intergenic 35.0%
ACTGAAAACCGTCTTTACAT+TGG + Chr3:48447041-48447060 MsG0380013928.01.T01:CDS 35.0%
AGTTCATCTTCCGAACTATT+TGG - Chr3:48446586-48446605 None:intergenic 35.0%
ATACCATCAATATCTACTGG+AGG - Chr3:48447140-48447159 None:intergenic 35.0%
ATGAGCCGCTACAATATTAT+AGG - Chr3:48447707-48447726 None:intergenic 35.0%
ATGCATCCATTTCACATGTT+AGG + Chr3:48447551-48447570 MsG0380013928.01.T01:CDS 35.0%
ATTATTAACCGTGCTAACCT+TGG + Chr3:48447928-48447947 MsG0380013928.01.T01:CDS 35.0%
CAAACCATCCAATGTAAAGA+CGG - Chr3:48447052-48447071 None:intergenic 35.0%
CGAATACCATCAATATCTAC+TGG - Chr3:48447143-48447162 None:intergenic 35.0%
CTTGACTATCAACTACTGAT+TGG - Chr3:48447882-48447901 None:intergenic 35.0%
GATCAAACTAGAAGTTACCA+AGG - Chr3:48447624-48447643 None:intergenic 35.0%
GCTAATGAAGGTTACAGATT+CGG + Chr3:48447667-48447686 MsG0380013928.01.T01:CDS 35.0%
TAAAGTAGAGATCCAGAAAC+AGG - Chr3:48447170-48447189 None:intergenic 35.0%
TACCATCAATATCTACTGGA+GGG - Chr3:48447139-48447158 None:intergenic 35.0%
TAGGAAATTCCGTATGTTCA+TGG - Chr3:48445872-48445891 None:intergenic 35.0%
TATAATATTGTAGCGGCTCA+TGG + Chr3:48447706-48447725 MsG0380013928.01.T01:CDS 35.0%
TATAGAGAATTCGTGTGCTT+GGG + Chr3:48446908-48446927 MsG0380013928.01.T01:intron 35.0%
TATTTAGTAGATGTCAGGGT+TGG + Chr3:48445817-48445836 MsG0380013928.01.T01:CDS 35.0%
TGCAGTCATGGTAAAATCTT+GGG - Chr3:48446961-48446980 None:intergenic 35.0%
TTATAGAGAATTCGTGTGCT+TGG + Chr3:48446907-48446926 MsG0380013928.01.T01:intron 35.0%
TTGCAGTCATGGTAAAATCT+TGG - Chr3:48446962-48446981 None:intergenic 35.0%
TTTGGATGAATGGTGAAATG+AGG + Chr3:48446763-48446782 MsG0380013928.01.T01:intron 35.0%
! ACTGATAGTGATGATGATAG+TGG + Chr3:48446159-48446178 MsG0380013928.01.T01:CDS 35.0%
! CGAACCTTCTGAAAATAGTT+CGG + Chr3:48446627-48446646 MsG0380013928.01.T01:CDS 35.0%
! GTTTCTGGATCTCTACTTTA+CGG + Chr3:48447170-48447189 MsG0380013928.01.T01:CDS 35.0%
! GTTTTCTTGATCTACCCAAT+TGG + Chr3:48447440-48447459 MsG0380013928.01.T01:CDS 35.0%
! TAGTGGCAATGATAGTGATA+AGG + Chr3:48446188-48446207 MsG0380013928.01.T01:CDS 35.0%
! TCTTCCGAACTATTTTCAGA+AGG - Chr3:48446607-48446626 None:intergenic 35.0%
! TTTGCACTTTTACCCGATAT+GGG + Chr3:48447241-48447260 MsG0380013928.01.T01:CDS 35.0%
!! ATCGAACTTTTGATTGATCC+AGG + Chr3:48446394-48446413 MsG0380013928.01.T01:intron 35.0%
!! CAATCAGTAGTTGATAGTCA+AGG + Chr3:48447880-48447899 MsG0380013928.01.T01:CDS 35.0%
!! GGTTATCTTCGTTCTGAAAT+CGG + Chr3:48445973-48445992 MsG0380013928.01.T01:CDS 35.0%
!! TCAGTGTCACTATCATTTTC+CGG - Chr3:48446144-48446163 None:intergenic 35.0%
!! TCTCTCTAAAATTGCAGTCA+TGG - Chr3:48446973-48446992 None:intergenic 35.0%
!! TGGTAACTTCTAGTTTGATC+AGG + Chr3:48447624-48447643 MsG0380013928.01.T01:intron 35.0%
!! TTTTGATTGATCCAGGTACT+TGG + Chr3:48446401-48446420 MsG0380013928.01.T01:intron 35.0%
!!! GGCTAGTTACATTTTAGAAC+CGG + Chr3:48446122-48446141 MsG0380013928.01.T01:CDS 35.0%
AACCGTGCATAGCACTAAAT+AGG - Chr3:48447601-48447620 None:intergenic 40.0%
AAGGTCGTGTAATTAACACC+TGG + Chr3:48447899-48447918 MsG0380013928.01.T01:CDS 40.0%
AAGTTGCGGTCAATAAGGTA+GGG - Chr3:48447088-48447107 None:intergenic 40.0%
ACCATCAATATCTACTGGAG+GGG - Chr3:48447138-48447157 None:intergenic 40.0%
ACCGTGCATAGCACTAAATA+GGG - Chr3:48447600-48447619 None:intergenic 40.0%
ACGGTTAATAATATCAGCCC+AGG - Chr3:48447920-48447939 None:intergenic 40.0%
AGGTCGTGTAATTAACACCT+GGG + Chr3:48447900-48447919 MsG0380013928.01.T01:CDS 40.0%
AGTGATTGGGACAATGATAG+TGG + Chr3:48446066-48446085 MsG0380013928.01.T01:CDS 40.0%
CATGCATAACTTCCATACCA+AGG - Chr3:48447948-48447967 None:intergenic 40.0%
CGTCTTTACATTGGATGGTT+TGG + Chr3:48447050-48447069 MsG0380013928.01.T01:CDS 40.0%
GAAAAGCTTCCTTGACCAAT+TGG - Chr3:48447458-48447477 None:intergenic 40.0%
GAATATGCAACAGCAATCCA+AGG - Chr3:48447395-48447414 None:intergenic 40.0%
GAATCCTATGGATGAAGACA+TGG + Chr3:48446423-48446442 MsG0380013928.01.T01:CDS 40.0%
GATGAATGGTTATACAACGG+TGG + Chr3:48447278-48447297 MsG0380013928.01.T01:CDS 40.0%
GCTACACCTAACATGTGAAA+TGG - Chr3:48447560-48447579 None:intergenic 40.0%
GTAAACCAGATACCTACTAC+AGG - Chr3:48447808-48447827 None:intergenic 40.0%
GTTTCCATAACAATTGTCGC+AGG - Chr3:48446293-48446312 None:intergenic 40.0%
TACAGAAGTTGCGGTCAATA+AGG - Chr3:48447093-48447112 None:intergenic 40.0%
TACATTTCTTCCTAGCTGCT+TGG + Chr3:48447782-48447801 MsG0380013928.01.T01:CDS 40.0%
TCCCTATTTAGTGCTATGCA+CGG + Chr3:48447596-48447615 MsG0380013928.01.T01:intron 40.0%
TGCCATTATTCCTACTTCTG+CGG + Chr3:48447211-48447230 MsG0380013928.01.T01:CDS 40.0%
TTAGGTGTAGCTGGTGTATT+CGG + Chr3:48447569-48447588 MsG0380013928.01.T01:intron 40.0%
TTGATCTACCCAATTGGTCA+AGG + Chr3:48447446-48447465 MsG0380013928.01.T01:CDS 40.0%
TTTCACATGTTAGGTGTAGC+TGG + Chr3:48447560-48447579 MsG0380013928.01.T01:CDS 40.0%
! AAAGTACCAGAGATTCCTAG+AGG - Chr3:48447491-48447510 None:intergenic 40.0%
! GTTTGCACTTTTACCCGATA+TGG + Chr3:48447240-48447259 MsG0380013928.01.T01:CDS 40.0%
! TTTTCAGATGGTATGCCTCT+AGG + Chr3:48447473-48447492 MsG0380013928.01.T01:CDS 40.0%
!! ACTTGGTGTAGCTTGTTACA+TGG + Chr3:48447331-48447350 MsG0380013928.01.T01:CDS 40.0%
!! CATAGTGCTGATACCTAATG+CGG - Chr3:48447830-48447849 None:intergenic 40.0%
!! CTTGGTGTAGCTTGTTACAT+GGG + Chr3:48447332-48447351 MsG0380013928.01.T01:CDS 40.0%
!! GATGATAGTGGCAATGATAG+TGG + Chr3:48446171-48446190 MsG0380013928.01.T01:CDS 40.0%
!! TGGGAACTTAGTTTTCGTCT+GGG + Chr3:48447362-48447381 MsG0380013928.01.T01:CDS 40.0%
ACGCGATAGCGAAAACCTAT+GGG + Chr3:48446992-48447011 MsG0380013928.01.T01:CDS 45.0%
AGCCGCAGAAGTAGGAATAA+TGG - Chr3:48447216-48447235 None:intergenic 45.0%
ATTCCTACTTCTGCGGCTAT+CGG + Chr3:48447218-48447237 MsG0380013928.01.T01:CDS 45.0%
CGCATTAGGTATCAGCACTA+TGG + Chr3:48447828-48447847 MsG0380013928.01.T01:CDS 45.0%
CTTCCATACCAAGGTTAGCA+CGG - Chr3:48447939-48447958 None:intergenic 45.0%
GAAGTTGCGGTCAATAAGGT+AGG - Chr3:48447089-48447108 None:intergenic 45.0%
GAGACCATGTCTTCATCCAT+AGG - Chr3:48446430-48446449 None:intergenic 45.0%
GTCGAGGCTCCATCTATAAA+TGG + Chr3:48448006-48448025 MsG0380013928.01.T01:CDS 45.0%
GTTGCCTGCGACAATTGTTA+TGG + Chr3:48446286-48446305 MsG0380013928.01.T01:intron 45.0%
TAACCGTGCTAACCTTGGTA+TGG + Chr3:48447933-48447952 MsG0380013928.01.T01:CDS 45.0%
TCCAGGTACTTGGAATCCTA+TGG + Chr3:48446411-48446430 MsG0380013928.01.T01:intron 45.0%
TCCATAGGATTCCAAGTACC+TGG - Chr3:48446415-48446434 None:intergenic 45.0%
TTGTTACATGGGTCGTGAGT+GGG + Chr3:48447343-48447362 MsG0380013928.01.T01:CDS 45.0%
! AAGCTGCATCCGTTGATGAA+TGG + Chr3:48447264-48447283 MsG0380013928.01.T01:CDS 45.0%
! AGGGGTTTAGAATACAGGTG+TGG + Chr3:48445688-48445707 MsG0380013928.01.T01:CDS 45.0%
! AGGTTACAGATTCGGTCAAG+AGG + Chr3:48447675-48447694 MsG0380013928.01.T01:CDS 45.0%
! GGTATCTGGTTTACCGCATT+AGG + Chr3:48447814-48447833 MsG0380013928.01.T01:CDS 45.0%
! GGTCAAGGAAGCTTTTCAGA+TGG + Chr3:48447461-48447480 MsG0380013928.01.T01:CDS 45.0%
! GTAAAGACGGTTTTCAGTGC+TGG - Chr3:48447039-48447058 None:intergenic 45.0%
! GTAGCGGCTCATGGTTATTT+TGG + Chr3:48447715-48447734 MsG0380013928.01.T01:CDS 45.0%
!! GTGGGAACTTAGTTTTCGTC+TGG + Chr3:48447361-48447380 MsG0380013928.01.T01:CDS 45.0%
!! TTATTTAAATTTAATTATCA+GGG - Chr3:48446937-48446956 None:intergenic 5.0%
!! TTTATTTAAATTTAATTATC+AGG - Chr3:48446938-48446957 None:intergenic 5.0%
AAACCGATAGCCGCAGAAGT+AGG - Chr3:48447224-48447243 None:intergenic 50.0%
ACGGATGCAGCTTCCCATAT+CGG - Chr3:48447257-48447276 None:intergenic 50.0%
AGTTACAGAAGCGACCCCAT+AGG - Chr3:48447010-48447029 None:intergenic 50.0%
CGCGATAGCGAAAACCTATG+GGG + Chr3:48446993-48447012 MsG0380013928.01.T01:CDS 50.0%
CTTGGCCTGTAGTAGGTATC+TGG + Chr3:48447800-48447819 MsG0380013928.01.T01:CDS 50.0%
CTTGTTACATGGGTCGTGAG+TGG + Chr3:48447342-48447361 MsG0380013928.01.T01:CDS 50.0%
GACGCGATAGCGAAAACCTA+TGG + Chr3:48446991-48447010 MsG0380013928.01.T01:CDS 50.0%
GCCCCTCCAGTAGATATTGA+TGG + Chr3:48447134-48447153 MsG0380013928.01.T01:CDS 50.0%
GGATGAAGACATGGTCTCTG+TGG + Chr3:48446432-48446451 MsG0380013928.01.T01:CDS 50.0%
GGTATTCGTGAGCCTGTTTC+TGG + Chr3:48447155-48447174 MsG0380013928.01.T01:CDS 50.0%
TAGTGCTATGCACGGTTCCT+TGG + Chr3:48447604-48447623 MsG0380013928.01.T01:intron 50.0%
TATGGGGTCGCTTCTGTAAC+TGG + Chr3:48447009-48447028 MsG0380013928.01.T01:CDS 50.0%
! GGTATGCCTCTAGGAATCTC+TGG + Chr3:48447482-48447501 MsG0380013928.01.T01:CDS 50.0%
ACTGCAGTAGCAGCTGCAAC+AGG - Chr3:48447422-48447441 None:intergenic 55.0%
CGGATGCAGCTTCCCATATC+GGG - Chr3:48447256-48447275 None:intergenic 55.0%
CTACTACAGGCCAAGCAGCT+AGG - Chr3:48447795-48447814 None:intergenic 55.0%
CTAGCTGCTTGGCCTGTAGT+AGG + Chr3:48447793-48447812 MsG0380013928.01.T01:CDS 55.0%
CTTCCCTCTAGACCTAGCTG+CGG + Chr3:48447984-48448003 MsG0380013928.01.T01:CDS 55.0%
GGTGTAGCTGGTGTATTCGG+CGG + Chr3:48447572-48447591 MsG0380013928.01.T01:intron 55.0%
CGACCGCAGCTAGGTCTAGA+GGG - Chr3:48447990-48448009 None:intergenic 60.0%
TCGACCGCAGCTAGGTCTAG+AGG - Chr3:48447991-48448010 None:intergenic 60.0%
TCTAGACCTAGCTGCGGTCG+AGG + Chr3:48447990-48448009 MsG0380013928.01.T01:CDS 60.0%
TTCGTCTGGGTATGCGCCCT+TGG + Chr3:48447375-48447394 MsG0380013928.01.T01:CDS 60.0%
ATGGAGCCTCGACCGCAGCT+AGG - Chr3:48447999-48448018 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48445679 48448032 48445679 ID=MsG0380013928.01;Name=MsG0380013928.01
Chr3 mRNA 48445679 48448032 48445679 ID=MsG0380013928.01.T01;Parent=MsG0380013928.01;Name=MsG0380013928.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|599
Chr3 exon 48445679 48446240 48445679 ID=MsG0380013928.01.T01:exon:8496;Parent=MsG0380013928.01.T01
Chr3 exon 48446416 48446670 48446416 ID=MsG0380013928.01.T01:exon:8497;Parent=MsG0380013928.01.T01
Chr3 exon 48446988 48447583 48446988 ID=MsG0380013928.01.T01:exon:8498;Parent=MsG0380013928.01.T01
Chr3 exon 48447646 48448032 48447646 ID=MsG0380013928.01.T01:exon:8499;Parent=MsG0380013928.01.T01
Chr3 CDS 48445679 48446240 48445679 ID=MsG0380013928.01.T01:cds;Parent=MsG0380013928.01.T01
Chr3 CDS 48446416 48446670 48446416 ID=MsG0380013928.01.T01:cds;Parent=MsG0380013928.01.T01
Chr3 CDS 48446988 48447583 48446988 ID=MsG0380013928.01.T01:cds;Parent=MsG0380013928.01.T01
Chr3 CDS 48447646 48448032 48447646 ID=MsG0380013928.01.T01:cds;Parent=MsG0380013928.01.T01
Gene Sequence

>MsG0380013928.01.T01

ATGTTTAATAGGGGTTTAGAATACAGGTGTGGTTTAAGTAAATCAATAGACAGTTTTGGTCCTATTGAAAATAACAGTGTAAACGAAGACCCATCTATTTTAACTGATATGGATAATACTATTCATAGTGATTATGATTATTTAGTAGATGTCAGGGTTGGAAAAACAATAGTGAGAATTCTAGTTATAGCCATGAACATACGGAATTTCCTATCTGATAAAACTTTTTTAGTTAGGGATAGTAATAGTTATTCCATATATAATTGGAATAATATCATTAATAGTTGTATTGAAGGTTATCTTCGTTCTGAAATCGGTATTGATAATTCCATTTTCGATGATAGCAATGATAGTGACAGTGACAATGACAGTGACAAATACAATGATAGTGATTGGGACAATGATAGTGGCAATGATAGTGATGATTATGATAAGCTCCAAAAGGCTAGTTACATTTTAGAACCGGAAAATGATAGTGACACTGATAGTGATGATGATAGTGGCAATGATAGTGGCAATGATAGTGATAAGGTCCAAAATAGTAGTGAAATCGAGAGTACTAGTACTTGGAATCCTATGGATGAAGACATGGTCTCTGTGGATCCCATTGAATTTAATTCGGAAGACGAACCTTCTGAAAATAGTCTTGATTCTTCTGAAAATGATTCTTATCAAAATAGTTCTTATCAAAATAGTTCGGAAGACGAACCTTCTGAAAATGATTCTTATCCAAATAGTTCGGAAGATGAACTCTCTGAAAATAGTTCGGAAGACGAACCTTCTGAAAATAGTTCGGAAGATGAACTCTCTGAAAATAAGAGACGCGATAGCGAAAACCTATGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCGGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCATTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTTAACCAATCAGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCGGTCGAGGCTCCATCTATAAATGGATAA

Protein sequence

>MsG0380013928.01.T01

MFNRGLEYRCGLSKSIDSFGPIENNSVNEDPSILTDMDNTIHSDYDYLVDVRVGKTIVRILVIAMNIRNFLSDKTFLVRDSNSYSIYNWNNIINSCIEGYLRSEIGIDNSIFDDSNDSDSDNDSDKYNDSDWDNDSGNDSDDYDKLQKASYILEPENDSDTDSDDDSGNDSGNDSDKVQNSSEIESTSTWNPMDEDMVSVDPIEFNSEDEPSENSLDSSENDSYQNSSYQNSSEDEPSENDSYPNSSEDELSENSSEDEPSENSSEDELSENKRRDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING*