AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008553.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008553.01.T01 MTR_2g044140 85.714 217 23 1 106 314 307 523 1.32e-125 369
MsG0280008553.01.T01 MTR_2g044140 92.079 101 5 1 6 103 86 186 3.36e-58 195
MsG0280008553.01.T01 MTR_2g043850 83.410 217 28 1 106 314 307 523 1.86e-122 361
MsG0280008553.01.T01 MTR_2g043850 87.129 101 10 1 6 103 86 186 1.33e-52 181
MsG0280008553.01.T01 MTR_2g020630 81.481 189 21 1 126 314 335 509 4.65e-105 316
MsG0280008553.01.T01 MTR_2g020630 83.168 101 14 1 6 103 86 186 2.35e-48 169
MsG0280008553.01.T01 MTR_4g124800 65.899 217 65 3 106 314 310 525 4.57e-102 309
MsG0280008553.01.T01 MTR_4g124800 55.882 102 39 3 6 102 88 188 5.31e-26 108
MsG0280008553.01.T01 MTR_2g450510 36.126 191 112 4 126 310 326 512 4.03e-35 133
MsG0280008553.01.T01 MTR_2g450510 32.653 98 65 1 7 103 82 179 3.20e-11 64.3
MsG0280008553.01.T01 MTR_2g450310 38.710 155 90 4 126 277 326 478 4.36e-30 119
MsG0280008553.01.T01 MTR_2g450310 31.633 98 66 1 7 103 82 179 8.70e-11 62.8
MsG0280008553.01.T01 MTR_6g037690 38.235 136 83 1 179 313 180 315 2.52e-25 103
MsG0280008553.01.T01 MTR_2g044120 94.118 34 2 0 210 243 22 55 2.00e-15 70.1
MsG0280008553.01.T01 MTR_4g124795 50.000 62 30 1 205 265 16 77 5.97e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008553.01.T01 AT1G19250 64.516 186 66 0 126 311 334 519 1.09e-86 270
MsG0280008553.01.T01 AT1G19250 52.475 101 44 2 6 103 86 185 1.87e-25 106
MsG0280008553.01.T01 AT5G45180 61.111 162 63 0 126 287 294 455 5.93e-69 222
MsG0280008553.01.T01 AT5G45180 52.475 101 43 3 6 103 85 183 3.69e-26 108

Find 107 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCTCATGCTGAAATT+TGG 0.186222 2:-33855350 MsG0280008553.01.T01:exon
TTGTTCTTTAACAATAATAA+TGG 0.280860 2:-33849904 MsG0280008553.01.T01:three_prime_UTR
GATGCTTTCACAAACAATTA+AGG 0.289580 2:-33850192 MsG0280008553.01.T01:CDS
CTAATTCAATTGGTGGTGTT+TGG 0.306081 2:-33855465 MsG0280008553.01.T01:five_prime_UTR
TGATGAAATATGTGAAGATT+TGG 0.311891 2:-33850096 MsG0280008553.01.T01:CDS
CCAATTCTAGACACTATAAT+TGG 0.315773 2:+33855566 None:intergenic
GAAAGATTGAGATTTCTATT+TGG 0.316351 2:-33850000 MsG0280008553.01.T01:exon
TTGTGTCCGATTCATTAGTT+TGG 0.341311 2:+33855159 None:intergenic
TAATGAATCGGACACAATTC+AGG 0.359144 2:-33855153 MsG0280008553.01.T01:intron
TGAGCCTTTCTGTAGCTTGT+TGG 0.361255 2:-33850662 MsG0280008553.01.T01:CDS
AAGATTTGGGTTGGCATACT+TGG 0.370246 2:-33850082 MsG0280008553.01.T01:CDS
AGGAATTGCATCACAACATT+TGG 0.370666 2:-33850131 MsG0280008553.01.T01:CDS
TTTGGAGACATTGTTCCTAT+AGG 0.379655 2:-33855447 MsG0280008553.01.T01:five_prime_UTR
CCAATTATAGTGTCTAGAAT+TGG 0.380149 2:-33855566 MsG0280008553.01.T01:five_prime_UTR
AACACCACCAATTGAATTAG+TGG 0.384296 2:+33855468 None:intergenic
TTTGAAGCCACTAATTCAAT+TGG 0.393284 2:-33855475 MsG0280008553.01.T01:five_prime_UTR
TAACCCACAAAGGCCATGTT+TGG 0.399285 2:+33850311 None:intergenic
GATGTTGTTCTCCTTGCAAC+TGG 0.404208 2:-33850721 MsG0280008553.01.T01:CDS
GATGAAATATGTGAAGATTT+GGG 0.417877 2:-33850095 MsG0280008553.01.T01:CDS
TGGTGGAAATGAAGTTTGTT+CGG 0.419334 2:-33855265 MsG0280008553.01.T01:CDS
AAGTGGATTTCCGTGGTCAT+TGG 0.424567 2:+33855211 None:intergenic
GGTGGAAATGAAGTTTGTTC+GGG 0.424789 2:-33855264 MsG0280008553.01.T01:CDS
GATTCCAAACATGGCCTTTG+TGG 0.425206 2:-33850315 MsG0280008553.01.T01:CDS
CTCCTTGCAACTGGTTATGA+TGG 0.429093 2:-33850712 MsG0280008553.01.T01:CDS
ACCTTACCCTTGAACACCTC+AGG 0.439842 2:+33854438 None:intergenic
GTGTCTAGAATTGGCATCAT+AGG 0.439915 2:-33855557 MsG0280008553.01.T01:five_prime_UTR
AAATTGTGTTACCTGTATAG+TGG 0.440294 2:+33850619 None:intergenic
TAGGGCTGTAGTGAAAGAAT+TGG 0.441584 2:+33855609 None:intergenic
TCTCCAACTTCACAATTTGA+AGG 0.441954 2:+33849764 None:intergenic
CATGGAAATGTTGGCATCAA+TGG 0.446961 2:+33854471 None:intergenic
CAAGGGCCCTGAGGTGTTCA+AGG 0.453652 2:-33854445 MsG0280008553.01.T01:CDS
CTTGAACACCTCAGGGCCCT+TGG 0.455615 2:+33854446 None:intergenic
GTGGTTTGCACTGGAAAATA+TGG 0.455978 2:-33854501 MsG0280008553.01.T01:CDS
AGTGGATTTCCGTGGTCATT+GGG 0.457189 2:+33855212 None:intergenic
TTCAATCCATACTTCTCAAA+CGG 0.458388 2:+33850909 None:intergenic
ATGCCTTCAAATTGTGAAGT+TGG 0.458903 2:-33849767 MsG0280008553.01.T01:three_prime_UTR
TTCTGTCCAAACTAATGAAT+CGG 0.467681 2:-33855165 MsG0280008553.01.T01:CDS
CTGGTACCATGCCACTATAC+AGG 0.469016 2:-33850630 MsG0280008553.01.T01:intron
TGCAAAATGGTTTCTGTGTG+GGG 0.470225 2:+33855652 None:intergenic
AAGTTGCCTTGAGTGGCCAT+AGG 0.476345 2:+33855590 None:intergenic
GACCACGGAAATCCACTTCC+TGG 0.476622 2:-33855206 MsG0280008553.01.T01:CDS
ATTCCAAACATGGCCTTTGT+GGG 0.477703 2:-33850314 MsG0280008553.01.T01:CDS
TTGCAAAATGGTTTCTGTGT+GGG 0.479448 2:+33855651 None:intergenic
GAAAGCATCTTCTCAGCACT+TGG 0.481629 2:+33850206 None:intergenic
AAACTTCATTTCCACCACTT+TGG 0.481987 2:+33855271 None:intergenic
ATACGTTCCATGTGGCTGGC+TGG 0.482124 2:-33850254 MsG0280008553.01.T01:CDS
ACCTCAGGGCCCTTGGTGCA+TGG 0.486162 2:+33854453 None:intergenic
CACTTCCTGGTCGTCCTGTG+TGG 0.488678 2:-33855193 MsG0280008553.01.T01:CDS
TTATAGTCACCAGCAGTGTA+AGG 0.496419 2:+33850026 None:intergenic
GAAGCCACTAATTCAATTGG+TGG 0.496741 2:-33855472 MsG0280008553.01.T01:five_prime_UTR
GCATTTACTCCTTACACTGC+TGG 0.499416 2:-33850035 MsG0280008553.01.T01:CDS
AGAATTGGCATCATAGGTGC+TGG 0.500736 2:-33855551 MsG0280008553.01.T01:five_prime_UTR
CCATCCATCGATTCCAAACA+TGG 0.506030 2:-33850324 MsG0280008553.01.T01:CDS
AGCTCCCACACAGGACGACC+AGG 0.506825 2:+33855188 None:intergenic
ATTCTTTCACTACAGCCCTA+TGG 0.509923 2:-33855606 MsG0280008553.01.T01:five_prime_UTR
GAGTTTGTAGTGGTTTGCAC+TGG 0.512700 2:-33854510 MsG0280008553.01.T01:CDS
AAGTTTGTTCGGGACAAAGA+AGG 0.514045 2:-33855254 MsG0280008553.01.T01:CDS
CTGAAGCTTAGTACACCTAT+AGG 0.515356 2:+33855432 None:intergenic
GGAGATACGTTCCATGTGGC+TGG 0.522555 2:-33850258 MsG0280008553.01.T01:CDS
AGTTGCCTTGAGTGGCCATA+GGG 0.533034 2:+33855591 None:intergenic
TCCCATCATAACCAGTTGCA+AGG 0.534071 2:+33850710 None:intergenic
TCCAAATTTCAGCATGAGAA+GGG 0.534724 2:+33855349 None:intergenic
ATTTGGGTTGGCATACTTGG+AGG 0.538869 2:-33850079 MsG0280008553.01.T01:CDS
CCCTTGGTGCATGGAAATGT+TGG 0.539920 2:+33854462 None:intergenic
AATTGGTAAGTTGCCTTGAG+TGG 0.544028 2:+33855583 None:intergenic
ACTTCCTGGTCGTCCTGTGT+GGG 0.544048 2:-33855192 MsG0280008553.01.T01:CDS
TTCCAAATTTCAGCATGAGA+AGG 0.544552 2:+33855348 None:intergenic
CACACAGGACGACCAGGAAG+TGG 0.544605 2:+33855194 None:intergenic
TCCTTGCAACTGGTTATGAT+GGG 0.545738 2:-33850711 MsG0280008553.01.T01:CDS
AAGGCCATGTTTGGAATCGA+TGG 0.546006 2:+33850320 None:intergenic
GCAAAACATGCTCACGGCAC+AGG 0.562294 2:+33849698 None:intergenic
TCTTTAACAATAATAATGGA+TGG 0.564803 2:-33849900 MsG0280008553.01.T01:three_prime_UTR
CTAAGCTTCAGTCACAAACA+TGG 0.565932 2:-33855420 MsG0280008553.01.T01:five_prime_UTR
AACAAGCTACAGAAAGGCTC+AGG 0.566868 2:+33850664 None:intergenic
AGCTTGTTGGAATACCCTAC+TGG 0.573175 2:-33850649 MsG0280008553.01.T01:CDS
TATAGTGGCATGGTACCAGT+AGG 0.579959 2:+33850634 None:intergenic
CCATGTTTGGAATCGATGGA+TGG 0.583448 2:+33850324 None:intergenic
AAATATGTGAAGATTTGGGT+TGG 0.584905 2:-33850091 MsG0280008553.01.T01:CDS
GCATTCATGTTAACATAATG+CGG 0.589813 2:+33849836 None:intergenic
TCAAAAGAGCATCAAAGTGG+TGG 0.590237 2:-33850792 MsG0280008553.01.T01:CDS
ATCATAGGTGCTGGAGTGAG+TGG 0.592554 2:-33855542 MsG0280008553.01.T01:five_prime_UTR
TTCACAAACAATTAAGGACA+TGG 0.592895 2:-33850186 MsG0280008553.01.T01:CDS
GTACCACTTCGAGTTTGTAG+TGG 0.594431 2:-33854520 MsG0280008553.01.T01:CDS
TATTCCAACAAGCTACAGAA+AGG 0.603701 2:+33850658 None:intergenic
AAGGGCCCTGAGGTGTTCAA+GGG 0.617677 2:-33854444 MsG0280008553.01.T01:intron
TACAGCCCTATGGCCACTCA+AGG 0.619181 2:-33855596 MsG0280008553.01.T01:five_prime_UTR
CCTTACCCTTGAACACCTCA+GGG 0.626128 2:+33854439 None:intergenic
TGTTTCAAATCTTTACACAT+CGG 0.627490 2:-33850279 MsG0280008553.01.T01:CDS
ACGGAAGTTTCACAGCAAGT+AGG 0.630736 2:+33850928 None:intergenic
GCCAACATTTCCATGCACCA+AGG 0.631300 2:-33854463 MsG0280008553.01.T01:CDS
TATGTTCAACACCAAAGTGG+TGG 0.633153 2:-33855282 MsG0280008553.01.T01:CDS
TGGACAGAAAGCTCCCACAC+AGG 0.633526 2:+33855179 None:intergenic
AAACCACTACAAACTCGAAG+TGG 0.640615 2:+33854517 None:intergenic
TATTAGACCAGCCAGCCACA+TGG 0.642929 2:+33850247 None:intergenic
TTTGCAAAATGGTTTCTGTG+TGG 0.647021 2:+33855650 None:intergenic
CCAACATTTCCATGCACCAA+GGG 0.648361 2:-33854462 MsG0280008553.01.T01:CDS
GTGTTACCTGTATAGTGGCA+TGG 0.656908 2:+33850624 None:intergenic
TAATGATATAAACAGAGACG+TGG 0.668121 2:-33850971 MsG0280008553.01.T01:intron
TCTTCAAAAGAGCATCAAAG+TGG 0.668843 2:-33850795 MsG0280008553.01.T01:CDS
TCCATGCACCAAGGGCCCTG+AGG 0.669783 2:-33854454 MsG0280008553.01.T01:CDS
ACTCTCAACATAACCCACAA+AGG 0.682237 2:+33850301 None:intergenic
TGTTATGTTCAACACCAAAG+TGG 0.683704 2:-33855285 MsG0280008553.01.T01:CDS
AATGATATAAACAGAGACGT+GGG 0.683918 2:-33850970 MsG0280008553.01.T01:intron
GACCAGGAAGTGGATTTCCG+TGG 0.691453 2:+33855204 None:intergenic
GGACGTCTACCCAATGACCA+CGG 0.697303 2:-33855221 MsG0280008553.01.T01:CDS
ATAGTGGCATGGTACCAGTA+GGG 0.697965 2:+33850635 None:intergenic
CATCGGAGATACGTTCCATG+TGG 0.738956 2:-33850262 MsG0280008553.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAATTTTTTTTTATA+CGG + Chr2:33854052-33854071 None:intergenic 0.0%
!! AAAATTCAAAAAAATACATA+TGG - Chr2:33851289-33851308 MsG0280008553.01.T01:intron 10.0%
!! CTAGAAAATTAATTAATTTA+GGG + Chr2:33854325-33854344 None:intergenic 10.0%
!! GAATTTAAAAAATAATTCAA+TGG + Chr2:33853568-33853587 None:intergenic 10.0%
!!! AAAAATATCAAATTTTAACT+CGG + Chr2:33850377-33850396 None:intergenic 10.0%
!!! AAATTTGAGAATTTTTTTTT+AGG - Chr2:33852017-33852036 MsG0280008553.01.T01:intron 10.0%
!!! ATATATTAAGTTACTTTATA+GGG - Chr2:33850494-33850513 MsG0280008553.01.T01:intron 10.0%
!!! TATATATTAAGTTACTTTAT+AGG - Chr2:33850493-33850512 MsG0280008553.01.T01:intron 10.0%
!!! TTTTTTAATTGAATTATTAC+AGG - Chr2:33852916-33852935 MsG0280008553.01.T01:intron 10.0%
!! AATAAGGAATCATAAAATAA+AGG + Chr2:33853048-33853067 None:intergenic 15.0%
!! ACAAATAAAGAAAAACATAA+AGG + Chr2:33853251-33853270 None:intergenic 15.0%
!! GAGAAAGATAATATAAAATA+AGG + Chr2:33853064-33853083 None:intergenic 15.0%
!! GCTAGAAAATTAATTAATTT+AGG + Chr2:33854326-33854345 None:intergenic 15.0%
!! TATATATATATATTCAGTGA+CGG + Chr2:33852253-33852272 None:intergenic 15.0%
!! TCTATAATTGAAAGATTATT+TGG - Chr2:33854077-33854096 MsG0280008553.01.T01:intron 15.0%
!! TCTTATCAAAAAAAATTTGA+TGG - Chr2:33853918-33853937 MsG0280008553.01.T01:intron 15.0%
!! TTAAAAAATGCAAAAGTTTA+TGG + Chr2:33853304-33853323 None:intergenic 15.0%
!! TTGTTCTTTAACAATAATAA+TGG - Chr2:33855455-33855474 MsG0280008553.01.T01:five_prime_UTR 15.0%
!!! ATCTAAACATTTCTTTTATA+AGG - Chr2:33854252-33854271 MsG0280008553.01.T01:intron 15.0%
!!! GAAATTTTTTATGAAAATCT+AGG + Chr2:33855485-33855504 None:intergenic 15.0%
!!! TAATTTTAAGTGTTTAATTG+TGG + Chr2:33850304-33850323 None:intergenic 15.0%
!!! TCTAAACATTTCTTTTATAA+GGG - Chr2:33854253-33854272 MsG0280008553.01.T01:intron 15.0%
!!! TTTAAAATGTCAAATGTTAT+TGG - Chr2:33850402-33850421 MsG0280008553.01.T01:intron 15.0%
!!! TTTGTCTTATTAGAAAATAA+TGG + Chr2:33853150-33853169 None:intergenic 15.0%
!!! TTTTTAAATTCATGTTTTAG+TGG - Chr2:33853577-33853596 MsG0280008553.01.T01:intron 15.0%
!! AAAAATTCTCAAATTTAGTG+CGG + Chr2:33852013-33852032 None:intergenic 20.0%
!! AAAATCATTCAAAGAAAGAT+AGG - Chr2:33852727-33852746 MsG0280008553.01.T01:intron 20.0%
!! AAGATCATATTTATTACCAT+TGG + Chr2:33853542-33853561 None:intergenic 20.0%
!! AATAACTAAAATTTAGAGAC+TGG - Chr2:33853618-33853637 MsG0280008553.01.T01:intron 20.0%
!! ATAACTAAAATTTAGAGACT+GGG - Chr2:33853619-33853638 MsG0280008553.01.T01:intron 20.0%
!! ATCAAGTTTACAATAATCAA+TGG + Chr2:33850954-33850973 None:intergenic 20.0%
!! GCATCAAATTTCAAAATTTA+AGG - Chr2:33854112-33854131 MsG0280008553.01.T01:intron 20.0%
!! GCTAAATTAGAATAATGATA+TGG + Chr2:33851816-33851835 None:intergenic 20.0%
!! GTTAATATATGTTTATTCCT+CGG + Chr2:33854303-33854322 None:intergenic 20.0%
!! GTTAATATTGTCTCTAAATT+TGG - Chr2:33853940-33853959 MsG0280008553.01.T01:intron 20.0%
!! TAATAAATCAAACGATTTCT+TGG + Chr2:33851481-33851500 None:intergenic 20.0%
!! TAATCTTTCAATTATAGAGA+TGG + Chr2:33854075-33854094 None:intergenic 20.0%
!! TAGAAATATTAGTTATATCG+AGG + Chr2:33852441-33852460 None:intergenic 20.0%
!! TCTCCTTTAATATATATACA+GGG - Chr2:33851955-33851974 MsG0280008553.01.T01:intron 20.0%
!! TGAATATCTCATATATATCA+AGG - Chr2:33850694-33850713 MsG0280008553.01.T01:CDS 20.0%
!! TTCTCCTTTAATATATATAC+AGG - Chr2:33851954-33851973 MsG0280008553.01.T01:intron 20.0%
!! TTGCATAGAACATAAAAAAA+TGG + Chr2:33853447-33853466 None:intergenic 20.0%
!!! AAAATGCACAATAATCTTTT+TGG + Chr2:33851329-33851348 None:intergenic 20.0%
!!! AAATTAAAGTATTTGACCAA+TGG + Chr2:33853894-33853913 None:intergenic 20.0%
!!! AGATAAAATCATCTTATTTG+AGG + Chr2:33850668-33850687 None:intergenic 20.0%
!!! ATTGAAAGATTATTTGGTTT+TGG - Chr2:33854083-33854102 MsG0280008553.01.T01:intron 20.0%
!!! ATTTCGATGTATTTTTTTAC+AGG - Chr2:33855004-33855023 MsG0280008553.01.T01:intron 20.0%
!!! CTAAACATTTCTTTTATAAG+GGG - Chr2:33854254-33854273 MsG0280008553.01.T01:intron 20.0%
!!! GATAAAATCATCTTATTTGA+GGG + Chr2:33850667-33850686 None:intergenic 20.0%
!!! GTTTCAATTTTATATGTATG+TGG - Chr2:33852200-33852219 MsG0280008553.01.T01:intron 20.0%
!!! TATTTAGTTGTTTTGCAAAA+TGG + Chr2:33849723-33849742 None:intergenic 20.0%
!!! TCTTTAACAATAATAATGGA+TGG - Chr2:33855459-33855478 MsG0280008553.01.T01:five_prime_UTR 20.0%
!!! TTTCGATGTATTTTTTTACA+GGG - Chr2:33855005-33855024 MsG0280008553.01.T01:intron 20.0%
!!! TTTGAGAATTTTTTTTTAGG+TGG - Chr2:33852020-33852039 MsG0280008553.01.T01:intron 20.0%
!!! TTTTTTTTTTCTTTCTCATG+AGG + Chr2:33853788-33853807 None:intergenic 20.0%
! AAAAAGGATACACATAAACT+CGG - Chr2:33851721-33851740 MsG0280008553.01.T01:intron 25.0%
! AAACTATGAAAAAGTCTACA+AGG - Chr2:33855196-33855215 MsG0280008553.01.T01:CDS 25.0%
! AATACTGCTAACAAAGTTAT+AGG + Chr2:33851915-33851934 None:intergenic 25.0%
! AATATATACGAGCTAAAACT+CGG - Chr2:33851770-33851789 MsG0280008553.01.T01:intron 25.0%
! AGAGATTGAGAACTAAAAAA+AGG - Chr2:33851705-33851724 MsG0280008553.01.T01:intron 25.0%
! ATACTGCTAACAAAGTTATA+GGG + Chr2:33851914-33851933 None:intergenic 25.0%
! ATAGGGACAAAAAAATTATG+AGG - Chr2:33850511-33850530 MsG0280008553.01.T01:intron 25.0%
! CTGAATAAATGAAAAATTCG+AGG + Chr2:33852824-33852843 None:intergenic 25.0%
! CTTTAATATATATACAGGGA+CGG - Chr2:33851959-33851978 MsG0280008553.01.T01:intron 25.0%
! GAAAGATTGAGATTTCTATT+TGG - Chr2:33855359-33855378 MsG0280008553.01.T01:exon 25.0%
! GATGAAATATGTGAAGATTT+GGG - Chr2:33855264-33855283 MsG0280008553.01.T01:CDS 25.0%
! TAAACTCGGGTAAAATAATA+TGG - Chr2:33851735-33851754 MsG0280008553.01.T01:intron 25.0%
! TATTCTAATTTAGCCCAATT+GGG - Chr2:33851822-33851841 MsG0280008553.01.T01:intron 25.0%
! TGATGAAATATGTGAAGATT+TGG - Chr2:33855263-33855282 MsG0280008553.01.T01:CDS 25.0%
! TGTTTCAAATCTTTACACAT+CGG - Chr2:33855080-33855099 MsG0280008553.01.T01:intron 25.0%
! TTATTACCATTGGAGATAAT+AGG + Chr2:33853532-33853551 None:intergenic 25.0%
! TTATTCTAATTTAGCCCAAT+TGG - Chr2:33851821-33851840 MsG0280008553.01.T01:intron 25.0%
! TTTAAACCATTCTTCTTATG+TGG + Chr2:33852554-33852573 None:intergenic 25.0%
!! ATGAATTTAGTGATTTTCCA+TGG - Chr2:33849966-33849985 MsG0280008553.01.T01:three_prime_UTR 25.0%
!! CTCGAATTTTTCATTTATTC+AGG - Chr2:33852822-33852841 MsG0280008553.01.T01:intron 25.0%
!! GTAAGTAGGTAAATTTTTGT+TGG + Chr2:33852679-33852698 None:intergenic 25.0%
!!! AATTTTGAAATTTGATGCCA+AGG + Chr2:33854110-33854129 None:intergenic 25.0%
!!! ACCAATAAAAAAGTGTTGTA+AGG + Chr2:33852099-33852118 None:intergenic 25.0%
!!! ACCTTACAACACTTTTTTAT+TGG - Chr2:33852095-33852114 MsG0280008553.01.T01:intron 25.0%
!!! ACTTTTAAGTAAACCTGATT+TGG + Chr2:33853499-33853518 None:intergenic 25.0%
!!! ATAATATTCTAAAGCGAACA+CGG - Chr2:33854795-33854814 MsG0280008553.01.T01:intron 25.0%
!!! TATTTTAGCTGAATATGCTA+CGG + Chr2:33852954-33852973 None:intergenic 25.0%
!!! TGAATGATTTTTTTGTTCTG+AGG + Chr2:33852718-33852737 None:intergenic 25.0%
!!! TTCGATGTATTTTTTTACAG+GGG - Chr2:33855006-33855025 MsG0280008553.01.T01:intron 25.0%
!!! TTTTGTTGGTGTTATTCTTA+TGG + Chr2:33852665-33852684 None:intergenic 25.0%
AAAAGGATACACATAAACTC+GGG - Chr2:33851722-33851741 MsG0280008553.01.T01:intron 30.0%
AAAATCAACTACATCCCAAT+TGG + Chr2:33851839-33851858 None:intergenic 30.0%
AAATATGTGAAGATTTGGGT+TGG - Chr2:33855268-33855287 MsG0280008553.01.T01:CDS 30.0%
AAATCAACTACATCCCAATT+GGG + Chr2:33851838-33851857 None:intergenic 30.0%
AAATTGTGTTACCTGTATAG+TGG + Chr2:33854743-33854762 None:intergenic 30.0%
AACCGAAATTGCTCAAATTA+AGG + Chr2:33854150-33854169 None:intergenic 30.0%
AATCACTTAAGTCCAATCAT+TGG + Chr2:33852523-33852542 None:intergenic 30.0%
AATGAAAAATTCGAGGTTTG+CGG + Chr2:33852817-33852836 None:intergenic 30.0%
AATGATATAAACAGAGACGT+GGG - Chr2:33854389-33854408 MsG0280008553.01.T01:intron 30.0%
ACGAAACTTTACTTACCTAA+CGG - Chr2:33852611-33852630 MsG0280008553.01.T01:intron 30.0%
AGACATGCATGTGTAAAAAT+TGG - Chr2:33850450-33850469 MsG0280008553.01.T01:intron 30.0%
AGATATGTATATATGCACTC+AGG + Chr2:33852409-33852428 None:intergenic 30.0%
ATAATGCGGTGAAAAATTGA+GGG + Chr2:33855512-33855531 None:intergenic 30.0%
ATATGTATATATGCACTCAG+GGG + Chr2:33852407-33852426 None:intergenic 30.0%
ATCACTTAAGTCCAATCATT+GGG + Chr2:33852522-33852541 None:intergenic 30.0%
ATGCAAAATCTTCCTCAAAT+GGG + Chr2:33854485-33854504 None:intergenic 30.0%
ATTTAGATATTGCGATTGTG+TGG - Chr2:33853193-33853212 MsG0280008553.01.T01:intron 30.0%
CAAAAACCGCTAATATTAGA+GGG + Chr2:33854022-33854041 None:intergenic 30.0%
CATTGACAACATCAAAATAG+TGG - Chr2:33850346-33850365 MsG0280008553.01.T01:intron 30.0%
CCAATTCTAGACACTATAAT+TGG + Chr2:33849796-33849815 None:intergenic 30.0%
CGTCCCTGTATATATATTAA+AGG + Chr2:33851961-33851980 None:intergenic 30.0%
CTAGAGTTACAAAATTGAGA+TGG - Chr2:33851676-33851695 MsG0280008553.01.T01:intron 30.0%
GATATGTATATATGCACTCA+GGG + Chr2:33852408-33852427 None:intergenic 30.0%
GATGCTTTCACAAACAATTA+AGG - Chr2:33855167-33855186 MsG0280008553.01.T01:CDS 30.0%
GCATTCATGTTAACATAATG+CGG + Chr2:33855526-33855545 None:intergenic 30.0%
TAAATCAAACGATTTCTTGG+TGG + Chr2:33851478-33851497 None:intergenic 30.0%
TAATGATATAAACAGAGACG+TGG - Chr2:33854388-33854407 MsG0280008553.01.T01:intron 30.0%
TAGTGGCTTCAAAAACAATA+GGG + Chr2:33849877-33849896 None:intergenic 30.0%
TCAAAAACCGCTAATATTAG+AGG + Chr2:33854023-33854042 None:intergenic 30.0%
TCAAAATGTGTGTTTATGTG+TGG + Chr2:33852122-33852141 None:intergenic 30.0%
TGTTTACCCTCTAATATTAG+CGG - Chr2:33854013-33854032 MsG0280008553.01.T01:intron 30.0%
TTAGTGGCTTCAAAAACAAT+AGG + Chr2:33849878-33849897 None:intergenic 30.0%
TTCAATCCATACTTCTCAAA+CGG + Chr2:33854453-33854472 None:intergenic 30.0%
TTCACAAACAATTAAGGACA+TGG - Chr2:33855173-33855192 MsG0280008553.01.T01:CDS 30.0%
TTCTGTCCAAACTAATGAAT+CGG - Chr2:33850194-33850213 MsG0280008553.01.T01:CDS 30.0%
TTTCCACCAGAAATTAAACT+CGG + Chr2:33852582-33852601 None:intergenic 30.0%
! AACAAGTTCTAGTAGTAAGT+AGG + Chr2:33852693-33852712 None:intergenic 30.0%
! AAGTGTTGTAAGGTTTATGT+GGG + Chr2:33852089-33852108 None:intergenic 30.0%
! AGTCTACAAGGTTTTACAAA+AGG - Chr2:33855208-33855227 MsG0280008553.01.T01:CDS 30.0%
! CACCTTAATTTGAGCAATTT+CGG - Chr2:33854145-33854164 MsG0280008553.01.T01:intron 30.0%
! CCAATTATAGTGTCTAGAAT+TGG - Chr2:33849793-33849812 MsG0280008553.01.T01:three_prime_UTR 30.0%
! GAACAAAAATTCGATTTGTC+TGG - Chr2:33850613-33850632 MsG0280008553.01.T01:intron 30.0%
! GAATTTTTGTTCTACGTTGT+GGG + Chr2:33850605-33850624 None:intergenic 30.0%
! TAAAGTATTTGACCAATGGT+AGG + Chr2:33853890-33853909 None:intergenic 30.0%
! TTGTTACTTAACCCAATGAT+TGG - Chr2:33852508-33852527 MsG0280008553.01.T01:intron 30.0%
! TTTGAAGCCACTAATTCAAT+TGG - Chr2:33849884-33849903 MsG0280008553.01.T01:three_prime_UTR 30.0%
!! AAAGTGTTGTAAGGTTTATG+TGG + Chr2:33852090-33852109 None:intergenic 30.0%
!! ACTCGAAGATTCTTTGATTT+TGG + Chr2:33854221-33854240 None:intergenic 30.0%
!! GTGTTCGCTTTAGAATATTA+TGG + Chr2:33854796-33854815 None:intergenic 30.0%
!! TGGTGTTATTCTTATGGAAA+AGG + Chr2:33852659-33852678 None:intergenic 30.0%
!! TTTTTCAATGAGGCTGATAA+GGG - Chr2:33854533-33854552 MsG0280008553.01.T01:intron 30.0%
!!! GACAAAGAAGGTTTTGATTT+CGG - Chr2:33850117-33850136 MsG0280008553.01.T01:CDS 30.0%
!!! TTTTTTCAATGAGGCTGATA+AGG - Chr2:33854532-33854551 MsG0280008553.01.T01:intron 30.0%
AAACTTCATTTCCACCACTT+TGG + Chr2:33850091-33850110 None:intergenic 35.0%
AAACTTCCGTTTGAGAAGTA+TGG - Chr2:33854444-33854463 MsG0280008553.01.T01:intron 35.0%
AACACCACCAATTGAATTAG+TGG + Chr2:33849894-33849913 None:intergenic 35.0%
AACCATGCACAATGATCATA+AGG - Chr2:33853379-33853398 MsG0280008553.01.T01:intron 35.0%
AATACCTAATACCACCTGAA+AGG + Chr2:33853107-33853126 None:intergenic 35.0%
AATCACAATGCATACAAGTC+TGG - Chr2:33851213-33851232 MsG0280008553.01.T01:intron 35.0%
AATCACTATTGATCTAGCCA+TGG - Chr2:33851029-33851048 MsG0280008553.01.T01:intron 35.0%
ACAACCTTCTTTCCTTAACA+AGG + Chr2:33850994-33851013 None:intergenic 35.0%
ACTTCCACATTATAGGATGT+GGG - Chr2:33853416-33853435 MsG0280008553.01.T01:intron 35.0%
AGCAAGCGCTATGATATTAT+GGG - Chr2:33852778-33852797 MsG0280008553.01.T01:intron 35.0%
AGGAATTGCATCACAACATT+TGG - Chr2:33855228-33855247 MsG0280008553.01.T01:CDS 35.0%
ATCTGACTATCTGATCTCAA+TGG - Chr2:33854879-33854898 MsG0280008553.01.T01:intron 35.0%
ATGCCTTCAAATTGTGAAGT+TGG - Chr2:33855592-33855611 MsG0280008553.01.T01:five_prime_UTR 35.0%
ATTGAGTGCCCCTAAAAATA+TGG - Chr2:33852343-33852362 MsG0280008553.01.T01:intron 35.0%
ATTGGACACTTCCACATTAT+AGG - Chr2:33853409-33853428 MsG0280008553.01.T01:intron 35.0%
CAAAATCGATGATATGACAG+GGG + Chr2:33854176-33854195 None:intergenic 35.0%
CATAATGCGGTGAAAAATTG+AGG + Chr2:33855513-33855532 None:intergenic 35.0%
CCTTGATCAACTAGCAAAAT+GGG + Chr2:33852991-33853010 None:intergenic 35.0%
CTGTGAATGATAGAATCATG+AGG + Chr2:33853655-33853674 None:intergenic 35.0%
GATGCAAAATCTTCCTCAAA+TGG + Chr2:33854486-33854505 None:intergenic 35.0%
GATGGTTGTAGGAATATCTT+TGG - Chr2:33853861-33853880 MsG0280008553.01.T01:intron 35.0%
GCAAAATCGATGATATGACA+GGG + Chr2:33854177-33854196 None:intergenic 35.0%
TAAGCGTAGTTGAGAATGAA+AGG - Chr2:33854977-33854996 MsG0280008553.01.T01:intron 35.0%
TAATGAATCGGACACAATTC+AGG - Chr2:33850206-33850225 MsG0280008553.01.T01:CDS 35.0%
TAATGCGGTGAAAAATTGAG+GGG + Chr2:33855511-33855530 None:intergenic 35.0%
TACAAGCAATCATGTCATCA+GGG - Chr2:33854837-33854856 MsG0280008553.01.T01:intron 35.0%
TAGCAAGCGCTATGATATTA+TGG - Chr2:33852777-33852796 MsG0280008553.01.T01:intron 35.0%
TATTCCAACAAGCTACAGAA+AGG + Chr2:33854704-33854723 None:intergenic 35.0%
TCATTGAAAAAACTCTCTGG+TGG + Chr2:33854524-33854543 None:intergenic 35.0%
TCCAAATTTCAGCATGAGAA+GGG + Chr2:33850013-33850032 None:intergenic 35.0%
TCCTTGATCAACTAGCAAAA+TGG + Chr2:33852992-33853011 None:intergenic 35.0%
TCTCCAACTTCACAATTTGA+AGG + Chr2:33855598-33855617 None:intergenic 35.0%
TGATCATAAGGAGTTTGCAT+TGG - Chr2:33853391-33853410 MsG0280008553.01.T01:intron 35.0%
TGCAAAATCGATGATATGAC+AGG + Chr2:33854178-33854197 None:intergenic 35.0%
TGCACAGTCAAAATTCATGA+AGG - Chr2:33854194-33854213 MsG0280008553.01.T01:intron 35.0%
TGCTTGTAGATAATGACAAC+AGG + Chr2:33854825-33854844 None:intergenic 35.0%
TGTCCATTTATCTCCTTCTA+CGG + Chr2:33850539-33850558 None:intergenic 35.0%
TGTTATGTTCAACACCAAAG+TGG - Chr2:33850074-33850093 MsG0280008553.01.T01:CDS 35.0%
TGTTTATTCCTCGGTATAGT+TGG + Chr2:33854294-33854313 None:intergenic 35.0%
TTACCATTGGAGATAATAGG+AGG + Chr2:33853529-33853548 None:intergenic 35.0%
TTCCAAATTTCAGCATGAGA+AGG + Chr2:33850014-33850033 None:intergenic 35.0%
TTCCACCAGAAATTAAACTC+GGG + Chr2:33852581-33852600 None:intergenic 35.0%
TTGCAAAATGGTTTCTGTGT+GGG + Chr2:33849711-33849730 None:intergenic 35.0%
TTGTCTACTTGATGTTTCAG+CGG - Chr2:33850817-33850836 MsG0280008553.01.T01:CDS 35.0%
TTGTGTCCGATTCATTAGTT+TGG + Chr2:33850203-33850222 None:intergenic 35.0%
TTGTTAAGGAAAGAAGGTTG+TGG - Chr2:33850993-33851012 MsG0280008553.01.T01:intron 35.0%
TTTGCAAAATGGTTTCTGTG+TGG + Chr2:33849712-33849731 None:intergenic 35.0%
TTTGGAGACATTGTTCCTAT+AGG - Chr2:33849912-33849931 MsG0280008553.01.T01:three_prime_UTR 35.0%
! AAATTCGATTTGTCTGGTAG+TGG - Chr2:33850619-33850638 MsG0280008553.01.T01:intron 35.0%
! AACAACCCGAGTTTAATTTC+TGG - Chr2:33852573-33852592 MsG0280008553.01.T01:intron 35.0%
! CGAATTTTTGTTCTACGTTG+TGG + Chr2:33850606-33850625 None:intergenic 35.0%
! GGTAATCAGTACTCTCTTTT+AGG + Chr2:33849992-33850011 None:intergenic 35.0%
! TAATCTGAAGTTTGACCGTT+AGG + Chr2:33852629-33852648 None:intergenic 35.0%
! TCAAGGTAACAATTTGCTCT+TGG - Chr2:33851066-33851085 MsG0280008553.01.T01:intron 35.0%
! TCAGGTGGTATTAGGTATTT+TGG - Chr2:33853108-33853127 MsG0280008553.01.T01:intron 35.0%
! TGGTGGAAATGAAGTTTGTT+CGG - Chr2:33850094-33850113 MsG0280008553.01.T01:CDS 35.0%
!! AAACTTGTTATGAGGACCAA+AGG - Chr2:33853354-33853373 MsG0280008553.01.T01:intron 35.0%
!! AACTTGTTATGAGGACCAAA+GGG - Chr2:33853355-33853374 MsG0280008553.01.T01:intron 35.0%
!! ACGTGACTTGTTCTAAATTG+CGG - Chr2:33851122-33851141 MsG0280008553.01.T01:intron 35.0%
!! AGTAAACCTGATTTGGTGTT+TGG + Chr2:33853492-33853511 None:intergenic 35.0%
!! CTAATTCAATTGGTGGTGTT+TGG - Chr2:33849894-33849913 MsG0280008553.01.T01:three_prime_UTR 35.0%
!! GAATGGCTTTACTGTTTTGA+TGG - Chr2:33853017-33853036 MsG0280008553.01.T01:intron 35.0%
!! GTGTGATAGTTGTTTTGCTA+CGG + Chr2:33849849-33849868 None:intergenic 35.0%
!! GTTGCTTCAAACTTGTTATG+AGG - Chr2:33853346-33853365 MsG0280008553.01.T01:intron 35.0%
!! TAACTCTAGAACACAAGTCA+TGG + Chr2:33851665-33851684 None:intergenic 35.0%
!! TCTTCAAAAGAGCATCAAAG+TGG - Chr2:33854564-33854583 MsG0280008553.01.T01:intron 35.0%
!!! AAGTGGTGGTTTTGTAATGA+AGG - Chr2:33854581-33854600 MsG0280008553.01.T01:intron 35.0%
!!! ACCAGAGAGTTTTTTCAATG+AGG - Chr2:33854523-33854542 MsG0280008553.01.T01:CDS 35.0%
!!! GATTATTTGGTTTTGGACCT+TGG - Chr2:33854090-33854109 MsG0280008553.01.T01:intron 35.0%
AAACCACTACAAACTCGAAG+TGG + Chr2:33850845-33850864 None:intergenic 40.0%
AAATAAGCTGCATGCCTTTC+AGG - Chr2:33853090-33853109 MsG0280008553.01.T01:intron 40.0%
AAGCCTACACACTCTACATA+TGG + Chr2:33851987-33852006 None:intergenic 40.0%
AATTGGTAAGTTGCCTTGAG+TGG + Chr2:33849779-33849798 None:intergenic 40.0%
ACAACCAAAACCATACGTGT+CGG + Chr2:33851634-33851653 None:intergenic 40.0%
ACCCTTCTCATGCTGAAATT+TGG - Chr2:33850009-33850028 MsG0280008553.01.T01:exon 40.0%
ACTACGCTTAGAAAAGAGTG+TGG + Chr2:33854967-33854986 None:intergenic 40.0%
ACTCTCAACATAACCCACAA+AGG + Chr2:33855061-33855080 None:intergenic 40.0%
AGCGCTATGATATTATGGGA+CGG - Chr2:33852782-33852801 MsG0280008553.01.T01:intron 40.0%
AGCTACTAGTGACCTTGTTA+AGG - Chr2:33850979-33850998 MsG0280008553.01.T01:intron 40.0%
ATATACCCAACCGACACAAT+GGG - Chr2:33853839-33853858 MsG0280008553.01.T01:intron 40.0%
ATATATGACACCGACACGTA+TGG - Chr2:33851621-33851640 MsG0280008553.01.T01:intron 40.0%
ATCAAACGATTTCTTGGTGG+AGG + Chr2:33851475-33851494 None:intergenic 40.0%
ATGAAGAGAGTCTCTCATAG+TGG + Chr2:33851449-33851468 None:intergenic 40.0%
ATGCCTCCTATTATCTCCAA+TGG - Chr2:33853523-33853542 MsG0280008553.01.T01:intron 40.0%
ATTCCAAACATGGCCTTTGT+GGG - Chr2:33855045-33855064 MsG0280008553.01.T01:intron 40.0%
ATTCTTTCACTACAGCCCTA+TGG - Chr2:33849753-33849772 MsG0280008553.01.T01:three_prime_UTR 40.0%
CACTTCCACATTATAGGATG+TGG - Chr2:33853415-33853434 MsG0280008553.01.T01:intron 40.0%
CATGGAAATGTTGGCATCAA+TGG + Chr2:33850891-33850910 None:intergenic 40.0%
CCCTAAAAATATGGTGCACT+GGG - Chr2:33852352-33852371 MsG0280008553.01.T01:intron 40.0%
CCCTTTGAATTTGGATGTCT+CGG - Chr2:33851236-33851255 MsG0280008553.01.T01:intron 40.0%
CCGAGACATCCAAATTCAAA+GGG + Chr2:33851239-33851258 None:intergenic 40.0%
CTAAGCTTCAGTCACAAACA+TGG - Chr2:33849939-33849958 MsG0280008553.01.T01:three_prime_UTR 40.0%
CTACAAGCAATCATGTCATC+AGG - Chr2:33854836-33854855 MsG0280008553.01.T01:intron 40.0%
CTCCTTATGATCATTGTGCA+TGG + Chr2:33853384-33853403 None:intergenic 40.0%
CTGAAGCTTAGTACACCTAT+AGG + Chr2:33849930-33849949 None:intergenic 40.0%
CTTCCACATTATAGGATGTG+GGG - Chr2:33853417-33853436 MsG0280008553.01.T01:intron 40.0%
GAAAATCGAGTCTGACAGAA+TGG - Chr2:33850571-33850590 MsG0280008553.01.T01:intron 40.0%
GAAGCCACTAATTCAATTGG+TGG - Chr2:33849887-33849906 MsG0280008553.01.T01:three_prime_UTR 40.0%
GATCCATATGTAGAGTGTGT+AGG - Chr2:33851981-33852000 MsG0280008553.01.T01:intron 40.0%
GCCTCATTGAAAAAACTCTC+TGG + Chr2:33854527-33854546 None:intergenic 40.0%
GTATTACACAATAGCACGCA+TGG - Chr2:33851395-33851414 MsG0280008553.01.T01:intron 40.0%
GTGACCTTGTTAAGGAAAGA+AGG - Chr2:33850987-33851006 MsG0280008553.01.T01:intron 40.0%
GTTGATCAAGGAGCAAAGAA+TGG - Chr2:33853000-33853019 MsG0280008553.01.T01:intron 40.0%
GTTTAATTGTGGTCACGTCA+AGG + Chr2:33850293-33850312 None:intergenic 40.0%
TAGGGCTGTAGTGAAAGAAT+TGG + Chr2:33849753-33849772 None:intergenic 40.0%
TATCTTTGGATGCCTACCAT+TGG - Chr2:33853875-33853894 MsG0280008553.01.T01:intron 40.0%
TATGTTCAACACCAAAGTGG+TGG - Chr2:33850077-33850096 MsG0280008553.01.T01:CDS 40.0%
TCCGAGACATCCAAATTCAA+AGG + Chr2:33851240-33851259 None:intergenic 40.0%
TCCTTGCAACTGGTTATGAT+GGG - Chr2:33854648-33854667 MsG0280008553.01.T01:intron 40.0%
TGAGCTCCACATAAGAAGAA+TGG - Chr2:33852545-33852564 MsG0280008553.01.T01:intron 40.0%
TGATCAACTAGCAAAATGGG+TGG + Chr2:33852988-33853007 None:intergenic 40.0%
TTATAGTCACCAGCAGTGTA+AGG + Chr2:33855336-33855355 None:intergenic 40.0%
TTATTCCTCGGTATAGTTGG+TGG + Chr2:33854291-33854310 None:intergenic 40.0%
TTGGGTATATGTCCTCATGT+CGG + Chr2:33853829-33853848 None:intergenic 40.0%
! AACCCGAGTTTAATTTCTGG+TGG - Chr2:33852576-33852595 MsG0280008553.01.T01:intron 40.0%
! AAGTTTGTTCGGGACAAAGA+AGG - Chr2:33850105-33850124 MsG0280008553.01.T01:CDS 40.0%
! CCCATTTTGCTAGTTGATCA+AGG - Chr2:33852988-33853007 MsG0280008553.01.T01:intron 40.0%
! GGTGGAAATGAAGTTTGTTC+GGG - Chr2:33850095-33850114 MsG0280008553.01.T01:CDS 40.0%
! GTGGTTTGCACTGGAAAATA+TGG - Chr2:33850858-33850877 MsG0280008553.01.T01:intron 40.0%
! GTGTCTAGAATTGGCATCAT+AGG - Chr2:33849802-33849821 MsG0280008553.01.T01:three_prime_UTR 40.0%
!! AAACCTGATTTGGTGTTTGG+TGG + Chr2:33853489-33853508 None:intergenic 40.0%
!! AAATTATGAGGTGCCGTAGA+AGG - Chr2:33850523-33850542 MsG0280008553.01.T01:intron 40.0%
!! AAGATTTGGGTTGGCATACT+TGG - Chr2:33855277-33855296 MsG0280008553.01.T01:CDS 40.0%
!! ATATATTCAGTGACGGATGC+AGG + Chr2:33852246-33852265 None:intergenic 40.0%
!! ATGCAGGATTTTGGAAAGTG+GGG + Chr2:33852230-33852249 None:intergenic 40.0%
!! CCCAGTGCACCATATTTTTA+GGG + Chr2:33852355-33852374 None:intergenic 40.0%
!! GATGCAGGATTTTGGAAAGT+GGG + Chr2:33852231-33852250 None:intergenic 40.0%
!! TCAAAAGAGCATCAAAGTGG+TGG - Chr2:33854567-33854586 MsG0280008553.01.T01:intron 40.0%
!!! CCAGTGCACCATATTTTTAG+GGG + Chr2:33852354-33852373 None:intergenic 40.0%
AAACGATTTCTTGGTGGAGG+AGG + Chr2:33851472-33851491 None:intergenic 45.0%
AACAAGCTACAGAAAGGCTC+AGG + Chr2:33854698-33854717 None:intergenic 45.0%
ACGGAAGTTTCACAGCAAGT+AGG + Chr2:33854434-33854453 None:intergenic 45.0%
ACTCCCCACATCCTATAATG+TGG + Chr2:33853423-33853442 None:intergenic 45.0%
AGAAACCACCAACTATACCG+AGG - Chr2:33854283-33854302 MsG0280008553.01.T01:intron 45.0%
AGAATTGGCATCATAGGTGC+TGG - Chr2:33849808-33849827 MsG0280008553.01.T01:three_prime_UTR 45.0%
AGGAAAGAAGGTTGTGGTTG+TGG - Chr2:33850999-33851018 MsG0280008553.01.T01:intron 45.0%
ATAGTGGCATGGTACCAGTA+GGG + Chr2:33854727-33854746 None:intergenic 45.0%
ATATCCTTCCTACCGACATG+AGG - Chr2:33853814-33853833 MsG0280008553.01.T01:intron 45.0%
CAAGTCTGGCCCTTTGAATT+TGG - Chr2:33851227-33851246 MsG0280008553.01.T01:intron 45.0%
CATATACCCAACCGACACAA+TGG - Chr2:33853838-33853857 MsG0280008553.01.T01:intron 45.0%
CCAACATTTCCATGCACCAA+GGG - Chr2:33850897-33850916 MsG0280008553.01.T01:intron 45.0%
CCCCTAAAAATATGGTGCAC+TGG - Chr2:33852351-33852370 MsG0280008553.01.T01:intron 45.0%
CTACAACCATCCCATTGTGT+CGG + Chr2:33853852-33853871 None:intergenic 45.0%
CTCCTTGCAACTGGTTATGA+TGG - Chr2:33854647-33854666 MsG0280008553.01.T01:intron 45.0%
GAAACCAGAACACCCATTTG+AGG - Chr2:33854470-33854489 MsG0280008553.01.T01:CDS 45.0%
GATCTCCTTCGCTACATGAT+TGG - Chr2:33854910-33854929 MsG0280008553.01.T01:intron 45.0%
GATGTTGTTCTCCTTGCAAC+TGG - Chr2:33854638-33854657 MsG0280008553.01.T01:intron 45.0%
GATTCCAAACATGGCCTTTG+TGG - Chr2:33855044-33855063 MsG0280008553.01.T01:intron 45.0%
GCATTTACTCCTTACACTGC+TGG - Chr2:33855324-33855343 MsG0280008553.01.T01:CDS 45.0%
GGAAAGAAGGTTGTGGTTGT+GGG - Chr2:33851000-33851019 MsG0280008553.01.T01:intron 45.0%
GTATATGTCCTCATGTCGGT+AGG + Chr2:33853825-33853844 None:intergenic 45.0%
GTGCAAAAAGAATGCGAGTG+TGG - Chr2:33851360-33851379 MsG0280008553.01.T01:intron 45.0%
GTGCCGTAGAAGGAGATAAA+TGG - Chr2:33850533-33850552 MsG0280008553.01.T01:intron 45.0%
GTGTTACCTGTATAGTGGCA+TGG + Chr2:33854738-33854757 None:intergenic 45.0%
TAACCCACAAAGGCCATGTT+TGG + Chr2:33855051-33855070 None:intergenic 45.0%
TAGCTGAATATGCTACGGCT+GGG + Chr2:33852949-33852968 None:intergenic 45.0%
TATAGTGGCATGGTACCAGT+AGG + Chr2:33854728-33854747 None:intergenic 45.0%
TCCCATCATAACCAGTTGCA+AGG + Chr2:33854652-33854671 None:intergenic 45.0%
TCTTCCTCAAATGGGTGTTC+TGG + Chr2:33854477-33854496 None:intergenic 45.0%
TGCAACCAATCATGTAGCGA+AGG + Chr2:33854918-33854937 None:intergenic 45.0%
TGGATTGCACAGGCAAATCA+AGG - Chr2:33851049-33851068 MsG0280008553.01.T01:intron 45.0%
TTAGCTGAATATGCTACGGC+TGG + Chr2:33852950-33852969 None:intergenic 45.0%
! AAGGCCATGTTTGGAATCGA+TGG + Chr2:33855042-33855061 None:intergenic 45.0%
! AAGTGGATTTCCGTGGTCAT+TGG + Chr2:33850151-33850170 None:intergenic 45.0%
! AGGCTGAATCGTCTCTGAAA+TGG + Chr2:33853768-33853787 None:intergenic 45.0%
! AGTGGATTTCCGTGGTCATT+GGG + Chr2:33850150-33850169 None:intergenic 45.0%
! CAGTACTCTCTTTTAGGCCA+TGG + Chr2:33849986-33850005 None:intergenic 45.0%
! CATGCCTTTCAGGTGGTATT+AGG - Chr2:33853100-33853119 MsG0280008553.01.T01:intron 45.0%
! CCATGTTTGGAATCGATGGA+TGG + Chr2:33855038-33855057 None:intergenic 45.0%
! CTGTCAGACTCGATTTTCGT+TGG + Chr2:33850569-33850588 None:intergenic 45.0%
! GAGTTTGTAGTGGTTTGCAC+TGG - Chr2:33850849-33850868 MsG0280008553.01.T01:intron 45.0%
! GCCCAGTGCACCATATTTTT+AGG + Chr2:33852356-33852375 None:intergenic 45.0%
! GTACCACTTCGAGTTTGTAG+TGG - Chr2:33850839-33850858 MsG0280008553.01.T01:CDS 45.0%
! TGAGCCTTTCTGTAGCTTGT+TGG - Chr2:33854697-33854716 MsG0280008553.01.T01:intron 45.0%
! TGATTTGCCTGTGCAATCCA+TGG + Chr2:33851049-33851068 None:intergenic 45.0%
!! AGCTTGTTGGAATACCCTAC+TGG - Chr2:33854710-33854729 MsG0280008553.01.T01:intron 45.0%
!! ATTTGGGTTGGCATACTTGG+AGG - Chr2:33855280-33855299 MsG0280008553.01.T01:CDS 45.0%
!! CCATCCATCGATTCCAAACA+TGG - Chr2:33855035-33855054 MsG0280008553.01.T01:intron 45.0%
!! GAAAGCATCTTCTCAGCACT+TGG + Chr2:33855156-33855175 None:intergenic 45.0%
!! GGATGCAGGATTTTGGAAAG+TGG + Chr2:33852232-33852251 None:intergenic 45.0%
!! TCGGTATAGTTGGTGGTTTC+TGG + Chr2:33854284-33854303 None:intergenic 45.0%
!! TGCAGGATTTTGGAAAGTGG+GGG + Chr2:33852229-33852248 None:intergenic 45.0%
!!! TTTTATATTTAGTAAAATTA+AGG - Chr2:33853982-33854001 MsG0280008553.01.T01:intron 5.0%
!!! TTTTTTGAATTTTTTTTTAT+AGG + Chr2:33851282-33851301 None:intergenic 5.0%
AAGTTGCCTTGAGTGGCCAT+AGG + Chr2:33849772-33849791 None:intergenic 50.0%
ACCTTACCCTTGAACACCTC+AGG + Chr2:33850924-33850943 None:intergenic 50.0%
AGTTGCCTTGAGTGGCCATA+GGG + Chr2:33849771-33849790 None:intergenic 50.0%
ATGTCCTCATGTCGGTAGGA+AGG + Chr2:33853821-33853840 None:intergenic 50.0%
CATCGGAGATACGTTCCATG+TGG - Chr2:33855097-33855116 MsG0280008553.01.T01:intron 50.0%
CATTGTGCATGGTTGCCCTT+TGG + Chr2:33853373-33853392 None:intergenic 50.0%
CCTCCACCAAACACCAAATC+AGG - Chr2:33853483-33853502 MsG0280008553.01.T01:intron 50.0%
CCTTACCCTTGAACACCTCA+GGG + Chr2:33850923-33850942 None:intergenic 50.0%
CGACACAATGGGATGGTTGT+AGG - Chr2:33853850-33853869 MsG0280008553.01.T01:intron 50.0%
CTGGTACCATGCCACTATAC+AGG - Chr2:33854729-33854748 MsG0280008553.01.T01:intron 50.0%
GCCAACATTTCCATGCACCA+AGG - Chr2:33850896-33850915 MsG0280008553.01.T01:intron 50.0%
TAAGCTGCATGCCTTTCAGG+TGG - Chr2:33853093-33853112 MsG0280008553.01.T01:intron 50.0%
TATTAGACCAGCCAGCCACA+TGG + Chr2:33855115-33855134 None:intergenic 50.0%
! AACCATCCCATTGTGTCGGT+TGG + Chr2:33853848-33853867 None:intergenic 50.0%
! CCCTTGGTGCATGGAAATGT+TGG + Chr2:33850900-33850919 None:intergenic 50.0%
! GACACCGACACGTATGGTTT+TGG - Chr2:33851627-33851646 MsG0280008553.01.T01:intron 50.0%
! GATCTAGCCATGGATTGCAC+AGG - Chr2:33851039-33851058 MsG0280008553.01.T01:intron 50.0%
!! ACCATCCCATTGTGTCGGTT+GGG + Chr2:33853847-33853866 None:intergenic 50.0%
!! ATCATAGGTGCTGGAGTGAG+TGG - Chr2:33849817-33849836 MsG0280008553.01.T01:three_prime_UTR 50.0%
!! CCTGATTTGGTGTTTGGTGG+AGG + Chr2:33853486-33853505 None:intergenic 50.0%
!! GCAGGATTTTGGAAAGTGGG+GGG + Chr2:33852228-33852247 None:intergenic 50.0%
!!! CAGTGACGGATGCAGGATTT+TGG + Chr2:33852239-33852258 None:intergenic 50.0%
ACCCAACCGACACAATGGGA+TGG - Chr2:33853843-33853862 MsG0280008553.01.T01:intron 55.0%
ACTTCCTGGTCGTCCTGTGT+GGG - Chr2:33850167-33850186 MsG0280008553.01.T01:CDS 55.0%
ATACGTTCCATGTGGCTGGC+TGG - Chr2:33855105-33855124 MsG0280008553.01.T01:intron 55.0%
GACCACGGAAATCCACTTCC+TGG - Chr2:33850153-33850172 MsG0280008553.01.T01:CDS 55.0%
GGACGTCTACCCAATGACCA+CGG - Chr2:33850138-33850157 MsG0280008553.01.T01:CDS 55.0%
GGAGATACGTTCCATGTGGC+TGG - Chr2:33855101-33855120 MsG0280008553.01.T01:intron 55.0%
TACAGCCCTATGGCCACTCA+AGG - Chr2:33849763-33849782 MsG0280008553.01.T01:three_prime_UTR 55.0%
TGGACAGAAAGCTCCCACAC+AGG + Chr2:33850183-33850202 None:intergenic 55.0%
! AAGGGCCCTGAGGTGTTCAA+GGG - Chr2:33850915-33850934 MsG0280008553.01.T01:intron 55.0%
! CCCTGAGGTGTTCAAGGGTA+AGG - Chr2:33850920-33850939 MsG0280008553.01.T01:intron 55.0%
! GACCAGGAAGTGGATTTCCG+TGG + Chr2:33850158-33850177 None:intergenic 55.0%
! GGTGTTTGGTGGAGGAACTG+TGG + Chr2:33853478-33853497 None:intergenic 55.0%
CACACAGGACGACCAGGAAG+TGG + Chr2:33850168-33850187 None:intergenic 60.0%
CACTTCCTGGTCGTCCTGTG+TGG - Chr2:33850166-33850185 MsG0280008553.01.T01:CDS 60.0%
CTTGAACACCTCAGGGCCCT+TGG + Chr2:33850916-33850935 None:intergenic 60.0%
TCAGGGGTGACCCTGAGCAT+GGG + Chr2:33852391-33852410 None:intergenic 60.0%
! CAAGGGCCCTGAGGTGTTCA+AGG - Chr2:33850914-33850933 MsG0280008553.01.T01:intron 60.0%
AGCTCCCACACAGGACGACC+AGG + Chr2:33850174-33850193 None:intergenic 65.0%
CTCAGGGGTGACCCTGAGCA+TGG + Chr2:33852392-33852411 None:intergenic 65.0%
GTGACCCTGAGCATGGGCGA+GGG + Chr2:33852385-33852404 None:intergenic 65.0%
TCCATGCACCAAGGGCCCTG+AGG - Chr2:33850905-33850924 MsG0280008553.01.T01:intron 65.0%
TGACCCTGAGCATGGGCGAG+GGG + Chr2:33852384-33852403 None:intergenic 65.0%
! ACCTCAGGGCCCTTGGTGCA+TGG + Chr2:33850909-33850928 None:intergenic 65.0%
GGTGACCCTGAGCATGGGCG+AGG + Chr2:33852386-33852405 None:intergenic 70.0%
CCCTGAGCATGGGCGAGGGG+CGG + Chr2:33852381-33852400 None:intergenic 75.0%
CCGCCCCTCGCCCATGCTCA+GGG - Chr2:33852378-33852397 MsG0280008553.01.T01:intron 75.0%
! GCCGCCCCTCGCCCATGCTC+AGG - Chr2:33852377-33852396 MsG0280008553.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 33849708 33855673 33849708 ID=MsG0280008553.01;Name=MsG0280008553.01
Chr2 mRNA 33849708 33855673 33849708 ID=MsG0280008553.01.T01;Parent=MsG0280008553.01;Name=MsG0280008553.01.T01;_AED=0.30;_eAED=0.30;_QI=310|0.5|0.4|1|1|1|5|305|314
Chr2 exon 33849708 33850355 33849708 ID=MsG0280008553.01.T01:exon:20350;Parent=MsG0280008553.01.T01
Chr2 exon 33850631 33850864 33850631 ID=MsG0280008553.01.T01:exon:20349;Parent=MsG0280008553.01.T01
Chr2 exon 33850921 33850978 33850921 ID=MsG0280008553.01.T01:exon:20348;Parent=MsG0280008553.01.T01
Chr2 exon 33854445 33854544 33854445 ID=MsG0280008553.01.T01:exon:20347;Parent=MsG0280008553.01.T01
Chr2 exon 33855154 33855673 33855154 ID=MsG0280008553.01.T01:exon:20346;Parent=MsG0280008553.01.T01
Chr2 five_prime_UTR 33855364 33855673 33855364 ID=MsG0280008553.01.T01:five_prime_utr;Parent=MsG0280008553.01.T01
Chr2 CDS 33855154 33855363 33855154 ID=MsG0280008553.01.T01:cds;Parent=MsG0280008553.01.T01
Chr2 CDS 33854445 33854544 33854445 ID=MsG0280008553.01.T01:cds;Parent=MsG0280008553.01.T01
Chr2 CDS 33850921 33850978 33850921 ID=MsG0280008553.01.T01:cds;Parent=MsG0280008553.01.T01
Chr2 CDS 33850631 33850864 33850631 ID=MsG0280008553.01.T01:cds;Parent=MsG0280008553.01.T01
Chr2 CDS 33850013 33850355 33850013 ID=MsG0280008553.01.T01:cds;Parent=MsG0280008553.01.T01
Chr2 three_prime_UTR 33849708 33850012 33849708 ID=MsG0280008553.01.T01:three_prime_utr;Parent=MsG0280008553.01.T01
Gene Sequence

>MsG0280008553.01.T01

ATGCTGAAATTTGGAATACTTGCATATTTAGCTGTTCAATTTGATTTGTTCAAGTATGTTATGTTCAACACCAAAGTGGTGGAAATGAAGTTTGTTCGGGACAAAGAAGGTTTTGATTTCGGACGTCTACCCAATGACCACGGAAATCCACTTCCTGGTCGTCCTGTGTGGGAGCTTTCTGTCCAAACTAATGAATCGGACACAATTCAGCGGTACCACTTCGAGTTTGTAGTGGTTTGCACTGGAAAATATGGTGACATACCATTGATGCCAACATTTCCATGCACCAAGGGCCCTGAGGTGTTCAAGGAGACGTGGGATTTCAAAGTTCATAGAGTCCTACTTGCTGTGAAACTTCCGTTTGAGAACTATCCACCAGAGAGTTTTTTCAATGAGGCTGATAAGGGAAAAATAATCTTCAAAAGAGCATCAAAGTGGTGGTTTTGTAATGAAGGAATTGAATTTGATGACAACACTAAAATTGATGCTGATGTTGTTCTCCTTGCAACTGGTTATGATGGGAAAAAGAAGCTCAAAACACTTTTGCCTGAGCCTTTCTGTAGCTTGTTGGAATACCCTACTGGTACCATGCCACTATACAGGGGAACTGTCCATCCATCGATTCCAAACATGGCCTTTGTGGGTTATGTTGAGAGTGTTTCAAATCTTTACACATCGGAGATACGTTCCATGTGGCTGGCTGGTCTAATAGATAACAAATTTAAGCTTCCAAGTGCTGAGAAGATGCTTTCACAAACAATTAAGGACATGGAAACTATGAAAAAGTCTACAAGGTTTTACAAAAGGAATTGCATCACAACATTTGGTATCAATCATAATGATGAAATATGTGAAGATTTGGGTTGGCATACTTGGAGGAAGAAGAACTTCATCAAAGAAGCATTTACTCCTTACACTGCTGGTGACTATAAGAAGAAAGATTGA

Protein sequence

>MsG0280008553.01.T01

MLKFGILAYLAVQFDLFKYVMFNTKVVEMKFVRDKEGFDFGRLPNDHGNPLPGRPVWELSVQTNESDTIQRYHFEFVVVCTGKYGDIPLMPTFPCTKGPEVFKETWDFKVHRVLLAVKLPFENYPPESFFNEADKGKIIFKRASKWWFCNEGIEFDDNTKIDADVVLLATGYDGKKKLKTLLPEPFCSLLEYPTGTMPLYRGTVHPSIPNMAFVGYVESVSNLYTSEIRSMWLAGLIDNKFKLPSAEKMLSQTIKDMETMKKSTRFYKRNCITTFGINHNDEICEDLGWHTWRKKNFIKEAFTPYTAGDYKKKD*