AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019028.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019028.01.T01 MTR_7g024060 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_6g087820 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_5g081190 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_5g091480 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_5g056290 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_3g031190 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_2g005490 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_2g010570 48.421 285 105 2 34 276 1 285 6.82e-88 267
MsG0480019028.01.T01 MTR_5g030110 48.421 285 105 2 34 276 1 285 7.20e-88 267
MsG0480019028.01.T01 MTR_2g007410 48.421 285 105 2 34 276 1 285 7.20e-88 267
MsG0480019028.01.T01 MTR_8g005940 48.897 272 99 3 34 280 1 257 3.53e-85 259
MsG0480019028.01.T01 MTR_7g451880 47.018 285 109 2 34 276 2 286 3.67e-84 257
MsG0480019028.01.T01 MTR_4g058660 46.316 285 111 2 34 276 1 285 7.25e-83 254
MsG0480019028.01.T01 MTR_7g074180 46.552 290 112 3 34 280 1 290 1.18e-82 253
MsG0480019028.01.T01 MTR_5g045850 49.254 268 104 4 34 280 1 257 4.67e-82 251
MsG0480019028.01.T01 MTR_8g446640 52.766 235 93 1 60 276 32 266 1.28e-81 250
MsG0480019028.01.T01 MTR_1g011490 45.614 285 104 3 34 276 1 276 1.11e-80 248
MsG0480019028.01.T01 MTR_2g010270 49.012 253 102 2 51 276 23 275 1.13e-78 243
MsG0480019028.01.T01 MTR_1g023370 45.965 285 93 3 34 276 1 266 4.47e-78 241
MsG0480019028.01.T01 MTR_3g015660 47.521 242 85 2 34 233 1 242 5.82e-71 221
MsG0480019028.01.T01 MTR_7g045450 43.922 255 116 2 34 261 1 255 3.35e-70 219
MsG0480019028.01.T01 MTR_6g073570 43.922 255 116 2 34 261 1 255 3.35e-70 219
MsG0480019028.01.T01 MTR_5g012180 42.066 271 90 5 34 280 1 228 2.24e-60 194
MsG0480019028.01.T01 MTR_1g082860 43.777 233 80 3 34 224 1 224 6.28e-59 191
MsG0480019028.01.T01 MTR_1g105785 35.135 296 147 3 34 284 1 296 2.66e-58 197
MsG0480019028.01.T01 MTR_1g052715 40.084 237 123 2 59 276 9 245 4.91e-58 191
MsG0480019028.01.T01 MTR_5g071020 41.634 257 76 5 34 280 1 193 5.29e-53 174
MsG0480019028.01.T01 MTR_5g019960 44.974 189 86 2 63 233 60 248 3.43e-52 172
MsG0480019028.01.T01 MTR_3g452170 34.507 284 144 2 34 275 1 284 6.33e-52 178
MsG0480019028.01.T01 MTR_7g110100 34.035 285 146 2 34 276 1 285 1.56e-51 178
MsG0480019028.01.T01 MTR_3g036220 39.689 257 102 5 34 280 1 214 8.91e-50 166
MsG0480019028.01.T01 MTR_7g039300 40.299 201 81 2 61 261 83 244 4.80e-44 152
MsG0480019028.01.T01 MTR_1g110330 36.948 249 79 5 34 280 2 174 2.22e-43 149
MsG0480019028.01.T01 MTR_0105s0080 44.086 186 61 2 60 227 32 192 7.53e-43 149
MsG0480019028.01.T01 MTR_0048s0080 44.737 152 66 1 147 280 4 155 2.04e-36 134
MsG0480019028.01.T01 MTR_7g051400 32.281 285 148 5 34 284 1 274 4.17e-35 134
MsG0480019028.01.T01 MTR_3g007260 40.845 142 59 1 63 204 39 155 6.42e-32 117
MsG0480019028.01.T01 MTR_6g465570 36.747 166 81 1 39 180 2 167 4.71e-31 115
MsG0480019028.01.T01 MTR_1g051235 34.884 172 87 2 34 180 1 172 9.98e-27 104
MsG0480019028.01.T01 MTR_8g465040 34.503 171 88 1 34 180 1 171 5.32e-25 99.4
MsG0480019028.01.T01 MTR_2g435900 42.276 123 41 1 78 200 1 93 2.09e-24 96.3
MsG0480019028.01.T01 MTR_3g449160 40.157 127 46 1 78 204 1 97 1.37e-23 94.0
MsG0480019028.01.T01 MTR_2g019040 40.299 134 54 2 161 276 4 129 2.85e-23 96.7
MsG0480019028.01.T01 MTR_3g068135 41.096 146 33 1 145 290 3 95 4.32e-23 95.5
MsG0480019028.01.T01 MTR_7g070110 44.444 108 40 1 51 138 6 113 1.36e-22 91.7
MsG0480019028.01.T01 MTR_6g024030 44.118 102 39 1 147 230 58 159 2.52e-22 94.4
MsG0480019028.01.T01 MTR_7g096440 26.744 172 126 0 57 228 1 172 3.03e-22 94.4
MsG0480019028.01.T01 MTR_3g109935 47.475 99 37 2 174 264 34 125 1.94e-20 85.9
MsG0480019028.01.T01 MTR_7g051840 33.898 118 75 1 63 180 11 125 6.18e-19 81.6
MsG0480019028.01.T01 MTR_4g014890 23.438 256 166 5 33 261 46 298 2.47e-15 77.0
MsG0480019028.01.T01 MTR_3g055660 23.438 256 166 5 33 261 46 298 4.27e-15 76.3
MsG0480019028.01.T01 MTR_4g085760 24.380 242 154 5 51 266 45 283 2.38e-13 71.2
MsG0480019028.01.T01 MTR_4g017450 29.197 137 74 1 34 147 1 137 3.74e-12 63.5
MsG0480019028.01.T01 MTR_8g024070 39.286 84 27 1 34 93 1 84 1.83e-11 60.1
MsG0480019028.01.T01 MTR_8g463820 22.594 239 151 5 60 278 51 275 4.97e-11 62.8
MsG0480019028.01.T01 MTR_3g056270 21.318 258 180 6 40 276 188 443 5.90e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019028.01.T01 AT1G52950 22.449 196 131 4 60 236 50 243 7.15e-12 66.6

Find 112 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACGCCTCCGTTACCTTT+TGG 0.196515 4:+13492579 None:intergenic
CTGTTCCCTGGGATTGGCTT+TGG 0.228349 4:-13492764 MsG0480019028.01.T01:CDS
AACACATTCATCGGAATTTC+CGG 0.233400 4:+13493851 None:intergenic
TTATGACTTATAAGCTTAAA+AGG 0.238374 4:+13493923 None:intergenic
ACAGAGGAGGAGAAGGTTAT+TGG 0.242432 4:-13493794 MsG0480019028.01.T01:intron
AATTTCCGGAGCGTTGATTT+TGG 0.254835 4:+13493865 None:intergenic
AATTACAAAGGATACTTTAA+AGG 0.268607 4:-13493634 MsG0480019028.01.T01:CDS
TGTTCCCTGGGATTGGCTTT+GGG 0.270024 4:-13492763 MsG0480019028.01.T01:CDS
ATCATATTCACGTCTCTCTT+TGG 0.285300 4:-13493457 MsG0480019028.01.T01:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 4:-13492614 MsG0480019028.01.T01:three_prime_UTR
GGCAAAGAAGGCCTCCTTCC+GGG 0.289862 4:-13492715 MsG0480019028.01.T01:CDS
GGTGTCCAAATTCCAGAAAA+TGG 0.297000 4:-13494002 MsG0480019028.01.T01:CDS
GCTGTTGTTGGTTTCAATTA+TGG 0.303133 4:-13493947 MsG0480019028.01.T01:CDS
CAATGCTTACACAAACCTTT+TGG 0.327519 4:-13494286 MsG0480019028.01.T01:CDS
AGGGAACAGTGAAGCTTCAT+AGG 0.345840 4:+13492778 None:intergenic
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 4:-13492550 MsG0480019028.01.T01:three_prime_UTR
GCTTCACTGTTCCCTGGGAT+TGG 0.355814 4:-13492770 MsG0480019028.01.T01:CDS
CAGTGTTATGTGTGGACATC+TGG 0.370463 4:+13493017 None:intergenic
GGTCGGATTGATGCCGGATG+TGG 0.377029 4:-13496664 MsG0480019028.01.T01:CDS
AGGCAAAGAAGGCCTCCTTC+CGG 0.382980 4:-13492716 MsG0480019028.01.T01:CDS
CTTCTTCCATAAGATGTCAT+AGG 0.408135 4:-13493663 MsG0480019028.01.T01:intron
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 4:+13492526 None:intergenic
GGCAACTGTACGAAGAGATT+TGG 0.418254 4:-13494023 MsG0480019028.01.T01:CDS
GTCATGTAAGCTTCCACCTC+AGG 0.426900 4:+13493172 None:intergenic
GGTGTTACCAATTGCTTCTA+CGG 0.434520 4:-13493223 MsG0480019028.01.T01:CDS
GACTTTCGTCCCTGCTCGAC+GGG 0.436251 4:+13492484 None:intergenic
TTCATAGGGTCTTTCTGTCC+AGG 0.444654 4:+13492793 None:intergenic
GGCATCAATCCGACCTCCTC+CGG 0.454758 4:+13496672 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 4:-13492630 MsG0480019028.01.T01:three_prime_UTR
ATTTGTGCCGTAGAAGCAAT+TGG 0.460587 4:+13493216 None:intergenic
GCCACCACCTACCCCACATC+CGG 0.460623 4:+13496651 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 4:+13492527 None:intergenic
AAAAGCCCAAAGCCAATCCC+AGG 0.461472 4:+13492758 None:intergenic
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 4:+13492635 None:intergenic
ATGAAGCTTCACTGTTCCCT+GGG 0.472889 4:-13492775 MsG0480019028.01.T01:CDS
TATGAAGCTTCACTGTTCCC+TGG 0.477188 4:-13492776 MsG0480019028.01.T01:CDS
TTCCAGAAAATGGTGACAAA+AGG 0.480141 4:-13493992 MsG0480019028.01.T01:CDS
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 4:+13492542 None:intergenic
AGGATTTGCTTAAGACGAAA+AGG 0.480739 4:-13492982 MsG0480019028.01.T01:CDS
GGGTCTTTCTGTCCAGGTGC+AGG 0.482613 4:+13492799 None:intergenic
GCAAGACCCACCCGTCGAGC+AGG 0.483546 4:-13492494 MsG0480019028.01.T01:three_prime_UTR
TATGACTTATAAGCTTAAAA+GGG 0.484604 4:+13493924 None:intergenic
GTTCTTGACAGTGCTGTTGT+TGG 0.486332 4:-13493959 MsG0480019028.01.T01:CDS
GCCTTCCACCTAAGCTGCGC+AGG 0.489457 4:+13492735 None:intergenic
TCCCACCAGTTATAGCCAAA+AGG 0.491728 4:+13494271 None:intergenic
CGACTTTCGTCCCTGCTCGA+CGG 0.495147 4:+13492483 None:intergenic
GTCGGATTGATGCCGGATGT+GGG 0.495381 4:-13496663 MsG0480019028.01.T01:CDS
GCCTTTCCACTCGGCACCGT+CGG 0.504327 4:+13492449 None:intergenic
TCCTGCGCAGCTTAGGTGGA+AGG 0.508478 4:-13492736 MsG0480019028.01.T01:CDS
TGGACATCTGGCTCACACCT+TGG 0.509840 4:+13493029 None:intergenic
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 4:-13492613 MsG0480019028.01.T01:three_prime_UTR
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 4:-13492527 MsG0480019028.01.T01:three_prime_UTR
TAAGCACAAGTTGACAATGA+TGG 0.513408 4:-13493903 MsG0480019028.01.T01:CDS
GCAAAGAAGGCCTCCTTCCG+GGG 0.515468 4:-13492714 MsG0480019028.01.T01:CDS
TTCGTCCCTGCTCGACGGGT+GGG 0.520516 4:+13492488 None:intergenic
TTTCGTCCCTGCTCGACGGG+TGG 0.521161 4:+13492487 None:intergenic
GAGTTGCACAGAGGAGGAGA+AGG 0.523294 4:-13493801 MsG0480019028.01.T01:CDS
ATGAACTCAAACACATTCAT+CGG 0.524562 4:+13493842 None:intergenic
CAAAAGGTTTGTGTAAGCAT+TGG 0.525789 4:+13494287 None:intergenic
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 4:-13492566 MsG0480019028.01.T01:three_prime_UTR
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 4:-13492565 MsG0480019028.01.T01:three_prime_UTR
CCAGAGTGGTATCTCACTGA+TGG 0.527423 4:+13492682 None:intergenic
CCTTGGTCTGTACTGGCACA+AGG 0.538614 4:+13492642 None:intergenic
AAGCACAAGTTGACAATGAT+GGG 0.541982 4:-13493902 MsG0480019028.01.T01:CDS
CAAAGAAGGCCTCCTTCCGG+GGG 0.550054 4:-13492713 MsG0480019028.01.T01:CDS
GCTTAGGTGGAAGGCAAAGA+AGG 0.550243 4:-13492727 MsG0480019028.01.T01:CDS
TCCTTGACGGCCTTTCCACT+CGG 0.555507 4:+13492440 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 4:+13492549 None:intergenic
GAATGGCAAGCTACCTGAGG+TGG 0.568689 4:-13493185 MsG0480019028.01.T01:CDS
TAGCATATCTACAGAGGAGG+GGG 0.575835 4:-13496697 MsG0480019028.01.T01:CDS
GGAGGAGGTCGGATTGATGC+CGG 0.578357 4:-13496670 MsG0480019028.01.T01:CDS
ATTCACCAAAATCAACGCTC+CGG 0.578990 4:-13493870 MsG0480019028.01.T01:CDS
CGTATTGAGTTGCACAGAGG+AGG 0.581589 4:-13493807 MsG0480019028.01.T01:CDS
CGTCGAGCAGGGACGAAAGT+CGG 0.584461 4:-13492482 MsG0480019028.01.T01:three_prime_UTR
GTCTACCTGAGACTGTCCCT+TGG 0.586612 4:+13492625 None:intergenic
CAAGACCCACCCGTCGAGCA+GGG 0.591055 4:-13492493 MsG0480019028.01.T01:three_prime_UTR
GGGAACAGTGAAGCTTCATA+GGG 0.591786 4:+13492779 None:intergenic
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 4:-13492575 MsG0480019028.01.T01:three_prime_UTR
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 4:-13492526 MsG0480019028.01.T01:three_prime_UTR
AGATGCGGACTACCTGCACC+TGG 0.596731 4:-13492811 MsG0480019028.01.T01:CDS
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 4:-13492557 MsG0480019028.01.T01:three_prime_UTR
TCCGACGGTGCCGAGTGGAA+AGG 0.598871 4:-13492450 MsG0480019028.01.T01:three_prime_UTR
AAGAAGGCCTCCTTCCGGGG+GGG 0.600255 4:-13492711 MsG0480019028.01.T01:CDS
TCGGCACCGTCGGATCACTA+AGG 0.600591 4:+13492459 None:intergenic
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 4:-13492594 MsG0480019028.01.T01:three_prime_UTR
GTTTGAGTTCATGACACTCA+AGG 0.610604 4:-13493831 MsG0480019028.01.T01:CDS
TCGGATTGATGCCGGATGTG+GGG 0.613799 4:-13496662 MsG0480019028.01.T01:intron
CATAGGTCATGTAATTACAA+AGG 0.617275 4:-13493646 MsG0480019028.01.T01:CDS
AAAGCCCAAAGCCAATCCCA+GGG 0.619579 4:+13492759 None:intergenic
GATAGCATATCTACAGAGGA+GGG 0.621802 4:-13496699 MsG0480019028.01.T01:CDS
TAACACTGTGTCGTTGTCTG+AGG 0.622706 4:-13493002 MsG0480019028.01.T01:CDS
AGACAGTTTCTATGGGGCGT+AGG 0.622986 4:-13492606 MsG0480019028.01.T01:three_prime_UTR
AAAGAAGGCCTCCTTCCGGG+GGG 0.627949 4:-13492712 MsG0480019028.01.T01:CDS
GGATAGCATATCTACAGAGG+AGG 0.629675 4:-13496700 MsG0480019028.01.T01:CDS
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 4:-13492588 MsG0480019028.01.T01:three_prime_UTR
AATGCAAGTATGTGAAGATG+CGG 0.634375 4:-13492826 MsG0480019028.01.T01:intron
TTTGAATGGCAAGCTACCTG+AGG 0.635177 4:-13493188 MsG0480019028.01.T01:CDS
AGTCGGCCTTAGTGATCCGA+CGG 0.641704 4:-13492465 MsG0480019028.01.T01:three_prime_UTR
ATTGATATAGATATAAGCCA+AGG 0.643528 4:-13493046 MsG0480019028.01.T01:CDS
CCTTGTGCCAGTACAGACCA+AGG 0.645647 4:-13492642 MsG0480019028.01.T01:three_prime_UTR
ATAGCATATCTACAGAGGAG+GGG 0.652229 4:-13496698 MsG0480019028.01.T01:CDS
AAACTTGATTGAATCATCTG+AGG 0.655340 4:-13492948 MsG0480019028.01.T01:intron
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 4:-13492534 MsG0480019028.01.T01:three_prime_UTR
CCATCAGTGAGATACCACTC+TGG 0.671241 4:-13492682 MsG0480019028.01.T01:CDS
GAATTCTAGCTCTTCCAGAG+TGG 0.675255 4:+13492668 None:intergenic
CAACGACACAGTGTTATGTG+TGG 0.680601 4:+13493009 None:intergenic
AATGGATAGCATATCTACAG+AGG 0.681595 4:-13496703 MsG0480019028.01.T01:CDS
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 4:-13492585 MsG0480019028.01.T01:three_prime_UTR
CTTGTGCCAGTACAGACCAA+GGG 0.693537 4:-13492641 MsG0480019028.01.T01:three_prime_UTR
AGTGATCCGACGGTGCCGAG+TGG 0.697531 4:-13492455 MsG0480019028.01.T01:three_prime_UTR
TCAGGTAGACAGTTTCTATG+GGG 0.720720 4:-13492612 MsG0480019028.01.T01:three_prime_UTR
GGACGTATTGAGTTGCACAG+AGG 0.767438 4:-13493810 MsG0480019028.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTCTTTAGAAAAAAA+AGG - Chr4:13494261-13494280 MsG0480019028.01.T01:CDS 10.0%
!!! TTTTTATTTATTTAGTGATA+GGG + Chr4:13493385-13493404 None:intergenic 10.0%
!!! TTTTTTATTTATTTAGTGAT+AGG + Chr4:13493386-13493405 None:intergenic 10.0%
!! ATTTATTCACATTTCAAATT+TGG + Chr4:13494110-13494129 None:intergenic 15.0%
!! CGATAAATTAATGAAAAATT+AGG + Chr4:13494516-13494535 None:intergenic 15.0%
!! TATTATGTAACAATTGTATT+AGG - Chr4:13495824-13495843 MsG0480019028.01.T01:intron 15.0%
!! TTTATTCACATTTCAAATTT+GGG + Chr4:13494109-13494128 None:intergenic 15.0%
!!! AAGATGTTTTATTTTTTTAC+TGG + Chr4:13495871-13495890 None:intergenic 15.0%
!!! AATTTTTTTTTTTTTTCCGA+TGG - Chr4:13494412-13494431 MsG0480019028.01.T01:intron 15.0%
!!! ATATTATTTTATTTCATTGC+AGG - Chr4:13493627-13493646 MsG0480019028.01.T01:CDS 15.0%
!!! ATTTTTTTTTTTTTTCCGAT+GGG - Chr4:13494413-13494432 MsG0480019028.01.T01:intron 15.0%
!!! CAGGTTATTATATATTTTTT+TGG + Chr4:13492967-13492986 None:intergenic 15.0%
!!! CATATTGTTTTTTTTATTGA+AGG - Chr4:13496069-13496088 MsG0480019028.01.T01:intron 15.0%
!!! CTCTTAAATTTAATTTAACA+CGG + Chr4:13494316-13494335 None:intergenic 15.0%
!!! GTTTTTTTTCGTTTTTTTTA+GGG - Chr4:13495089-13495108 MsG0480019028.01.T01:intron 15.0%
!!! TGTTTTTTTTCGTTTTTTTT+AGG - Chr4:13495088-13495107 MsG0480019028.01.T01:intron 15.0%
!! AAACAGAAGTTATTACTTAT+AGG + Chr4:13494771-13494790 None:intergenic 20.0%
!! AAATGATCATTACTAATTGA+TGG - Chr4:13496291-13496310 MsG0480019028.01.T01:intron 20.0%
!! AATTACAAAGGATACTTTAA+AGG - Chr4:13495513-13495532 MsG0480019028.01.T01:intron 20.0%
!! AGTGTAAACATAAAGTAAAA+AGG - Chr4:13492930-13492949 MsG0480019028.01.T01:intron 20.0%
!! ATAACCTTGTCATAAAAAAA+AGG + Chr4:13494990-13495009 None:intergenic 20.0%
!! ATCAATTAGTAATGATCATT+TGG + Chr4:13496292-13496311 None:intergenic 20.0%
!! ATTAAATACGTTGAGTTAAA+CGG + Chr4:13494460-13494479 None:intergenic 20.0%
!! CGATATTAAAATAAGACAAT+AGG + Chr4:13496036-13496055 None:intergenic 20.0%
!! CTAATTCACATTTCAAATTT+GGG + Chr4:13493740-13493759 None:intergenic 20.0%
!! CTATTTAATGTACAATTGAT+TGG + Chr4:13494222-13494241 None:intergenic 20.0%
!! TAAATAGTATTAAAACCACA+CGG - Chr4:13494235-13494254 MsG0480019028.01.T01:intron 20.0%
!! TAACACAGAAAATTGTATAA+TGG - Chr4:13494129-13494148 MsG0480019028.01.T01:intron 20.0%
!! TACATGAATTGAAAACAATA+AGG - Chr4:13493051-13493070 MsG0480019028.01.T01:CDS 20.0%
!! TATGACTTATAAGCTTAAAA+GGG + Chr4:13495226-13495245 None:intergenic 20.0%
!! TTACGTACAAAATTGTATAA+TGG - Chr4:13493835-13493854 MsG0480019028.01.T01:CDS 20.0%
!! TTATGACTTATAAGCTTAAA+AGG + Chr4:13495227-13495246 None:intergenic 20.0%
!! TTTATGTTTACACTCTAATA+TGG + Chr4:13492924-13492943 None:intergenic 20.0%
!!! AAAAATCTAGGTTAGTTTTA+GGG + Chr4:13493481-13493500 None:intergenic 20.0%
!!! TCTTATTTTAATATCGATCA+TGG - Chr4:13496040-13496059 MsG0480019028.01.T01:intron 20.0%
!!! TTTCTTTTCCTTTCAATTTA+CGG + Chr4:13492845-13492864 None:intergenic 20.0%
!!! TTTTTTATTATGCAATCTTG+TGG + Chr4:13494287-13494306 None:intergenic 20.0%
! AAAGTCAACATTACAAATTC+AGG - Chr4:13494691-13494710 MsG0480019028.01.T01:intron 25.0%
! AAATAAGACGTCATAGTAAA+TGG + Chr4:13493315-13493334 None:intergenic 25.0%
! AATATGCAATCGTGTTATAA+TGG + Chr4:13493612-13493631 None:intergenic 25.0%
! ACAATGAAAATGTGTTATAG+TGG + Chr4:13494578-13494597 None:intergenic 25.0%
! ATATGCAATCGTCTTATAAA+TGG + Chr4:13494036-13494055 None:intergenic 25.0%
! ATATGCAATCGTGTTATAAA+TGG + Chr4:13493665-13493684 None:intergenic 25.0%
! ATTGATATAGATATAAGCCA+AGG - Chr4:13496101-13496120 MsG0480019028.01.T01:intron 25.0%
! ATTTCCTCAAGAATTATGTT+AGG + Chr4:13494483-13494502 None:intergenic 25.0%
! CCTAATTCACATTTCAAATT+TGG + Chr4:13493741-13493760 None:intergenic 25.0%
! GGAATAATCACTTAAGATTA+AGG + Chr4:13496015-13496034 None:intergenic 25.0%
! GTATAATCAATGAAAATCGA+AGG + Chr4:13494671-13494690 None:intergenic 25.0%
! GTTACTTAAAATTGTAGACA+TGG + Chr4:13493293-13493312 None:intergenic 25.0%
! TAATAGCACAATTTATGTGT+AGG - Chr4:13493560-13493579 MsG0480019028.01.T01:intron 25.0%
! TAATCCTAACATAATTCTTG+AGG - Chr4:13494476-13494495 MsG0480019028.01.T01:intron 25.0%
! TAATCTTACTTACTAAAGCT+TGG - Chr4:13493436-13493455 MsG0480019028.01.T01:CDS 25.0%
! TAATGAAAAATTAGGTACGT+TGG + Chr4:13494508-13494527 None:intergenic 25.0%
! TACAAAATATCTCTTATGGT+GGG + Chr4:13494553-13494572 None:intergenic 25.0%
! TATACCACTGTAAGAATTAT+TGG - Chr4:13494373-13494392 MsG0480019028.01.T01:intron 25.0%
! TGAAGATATAGAGTAATGTT+TGG - Chr4:13495582-13495601 MsG0480019028.01.T01:intron 25.0%
! TTAAAGGAAACAGAGAAAAA+TGG - Chr4:13495529-13495548 MsG0480019028.01.T01:intron 25.0%
! TTACAAAATATCTCTTATGG+TGG + Chr4:13494554-13494573 None:intergenic 25.0%
!! ACAATTTTGTACGTAATTCA+CGG + Chr4:13493831-13493850 None:intergenic 25.0%
!! ACACATAAATTGTGCTATTA+TGG + Chr4:13493560-13493579 None:intergenic 25.0%
!! ATATGCAATCGACTTATAAA+TGG + Chr4:13493924-13493943 None:intergenic 25.0%
!! CCAAATTTGAAATGTGAATT+AGG - Chr4:13493738-13493757 MsG0480019028.01.T01:intron 25.0%
!! TGTTAATACCTTTTGTTAAC+AGG - Chr4:13495663-13495682 MsG0480019028.01.T01:intron 25.0%
!!! ACATCCTTTTTTTTATGACA+AGG - Chr4:13494983-13495002 MsG0480019028.01.T01:intron 25.0%
!!! GAAAAATCTAGGTTAGTTTT+AGG + Chr4:13493482-13493501 None:intergenic 25.0%
!!! GGCACAAATATTATTTTGAA+TGG - Chr4:13495945-13495964 MsG0480019028.01.T01:intron 25.0%
!!! TACTATGACGTCTTATTTTA+GGG - Chr4:13493317-13493336 MsG0480019028.01.T01:intron 25.0%
!!! TATTTTAAATCAGGTGCTAT+GGG - Chr4:13495903-13495922 MsG0480019028.01.T01:intron 25.0%
!!! TTACTATGACGTCTTATTTT+AGG - Chr4:13493316-13493335 MsG0480019028.01.T01:intron 25.0%
!!! TTAGTGATAGGGATTTTTTA+TGG + Chr4:13493374-13493393 None:intergenic 25.0%
!!! TTTTTTCGTTTTTTTTAGGG+TGG - Chr4:13495092-13495111 MsG0480019028.01.T01:intron 25.0%
AAACTTGATTGAATCATCTG+AGG - Chr4:13496199-13496218 MsG0480019028.01.T01:intron 30.0%
AACACACGATACCATTAAAA+CGG - Chr4:13493778-13493797 MsG0480019028.01.T01:intron 30.0%
AATGATTATCGCAACAATTC+AGG + Chr4:13495047-13495066 None:intergenic 30.0%
ACTACCCTTTAAACAAATTG+AGG + Chr4:13493208-13493227 None:intergenic 30.0%
ATGAACTCAAACACATTCAT+CGG + Chr4:13495308-13495327 None:intergenic 30.0%
ATTTACGGTTAACATCAGTA+AGG + Chr4:13492830-13492849 None:intergenic 30.0%
CATAGGTCATGTAATTACAA+AGG - Chr4:13495501-13495520 MsG0480019028.01.T01:intron 30.0%
CCTTTAAACAAATTGAGGAA+CGG + Chr4:13493203-13493222 None:intergenic 30.0%
CGGTAATTCCATTTAAATCA+TGG + Chr4:13494440-13494459 None:intergenic 30.0%
CTTTAAACAAATTGAGGAAC+GGG + Chr4:13493202-13493221 None:intergenic 30.0%
GATGTTAACCGTAAATTGAA+AGG - Chr4:13492834-13492853 MsG0480019028.01.T01:intron 30.0%
GGCTTACAAAATATCTCTTA+TGG + Chr4:13494557-13494576 None:intergenic 30.0%
GTAACTATGTAGACAAAACA+TGG + Chr4:13495452-13495471 None:intergenic 30.0%
GTTATAATGGCGTGTATTAA+GGG + Chr4:13493599-13493618 None:intergenic 30.0%
TAATCAATGAAAATCGAAGG+TGG + Chr4:13494668-13494687 None:intergenic 30.0%
TATATAGACAGTTCAACAAG+TGG - Chr4:13496265-13496284 MsG0480019028.01.T01:intron 30.0%
TGATTTCTCCTGTTAACAAA+AGG + Chr4:13495674-13495693 None:intergenic 30.0%
TGTTATAATGGCGTGTATTA+AGG + Chr4:13493600-13493619 None:intergenic 30.0%
TTCACATTTCAAATTTGGGA+TGG + Chr4:13493736-13493755 None:intergenic 30.0%
TTCAGGAAACCTGTATTTAT+TGG - Chr4:13494708-13494727 MsG0480019028.01.T01:intron 30.0%
TTTCTCAAGCATTTATGTGT+AGG - Chr4:13493508-13493527 MsG0480019028.01.T01:intron 30.0%
! ACCTGATTTAAAATAGACGT+TGG + Chr4:13495898-13495917 None:intergenic 30.0%
! CAATTTTGTACGTAATTCAC+GGG + Chr4:13493830-13493849 None:intergenic 30.0%
! CGTTCCTCAATTTGTTTAAA+GGG - Chr4:13493201-13493220 MsG0480019028.01.T01:CDS 30.0%
! GAGCAAGTAATTTTTCACAA+TGG - Chr4:13494333-13494352 MsG0480019028.01.T01:intron 30.0%
! GTTTTGTCTACATAGTTACT+TGG - Chr4:13495453-13495472 MsG0480019028.01.T01:intron 30.0%
! TAAAGAAATTTTCAACCGTG+TGG + Chr4:13494253-13494272 None:intergenic 30.0%
!! CTATTTTAAATCAGGTGCTA+TGG - Chr4:13495902-13495921 MsG0480019028.01.T01:intron 30.0%
!! TCATTTTTACGTGATTGTTG+TGG - Chr4:13494738-13494757 MsG0480019028.01.T01:intron 30.0%
!! TCTTTTGTTTCTCCTTTGAA+AGG + Chr4:13492671-13492690 None:intergenic 30.0%
!!! AATTTTGACTGAGAGAAAAG+TGG + Chr4:13493255-13493274 None:intergenic 30.0%
!!! AGCTTTTTTAATGCTCAAGA+GGG - Chr4:13495737-13495756 MsG0480019028.01.T01:intron 30.0%
!!! CGTTTTTTTTCCCGTTTTAA+TGG + Chr4:13493792-13493811 None:intergenic 30.0%
!!! TAGCTTTTTTAATGCTCAAG+AGG - Chr4:13495736-13495755 MsG0480019028.01.T01:intron 30.0%
AAAGCCATGAACAAAAGAGA+AGG - Chr4:13492579-13492598 MsG0480019028.01.T01:three_prime_UTR 35.0%
AACACATTCATCGGAATTTC+CGG + Chr4:13495299-13495318 None:intergenic 35.0%
AAGCCATGAACAAAAGAGAA+GGG - Chr4:13492580-13492599 MsG0480019028.01.T01:three_prime_UTR 35.0%
AATGCAAGTATGTGAAGATG+CGG - Chr4:13496321-13496340 MsG0480019028.01.T01:intron 35.0%
ACACACGATACCATTAAAAC+GGG - Chr4:13493779-13493798 MsG0480019028.01.T01:intron 35.0%
ACATGACCTATGACATCTTA+TGG + Chr4:13495493-13495512 None:intergenic 35.0%
AGAAAGAGCAGGAAAAATCT+AGG + Chr4:13493493-13493512 None:intergenic 35.0%
ATAAATGCTTGAGAAAGAGC+AGG + Chr4:13493504-13493523 None:intergenic 35.0%
ATCATATTCACGTCTCTCTT+TGG - Chr4:13495690-13495709 MsG0480019028.01.T01:intron 35.0%
ATGGTGTATACCATCTAAGA+AGG - Chr4:13494936-13494955 MsG0480019028.01.T01:intron 35.0%
ATTGTATCTCTATTTGCCGT+TGG - Chr4:13493079-13493098 MsG0480019028.01.T01:intron 35.0%
CAAAAGGTTTGTGTAAGCAT+TGG + Chr4:13494863-13494882 None:intergenic 35.0%
CATTTAAATCATGGTCCCAT+CGG + Chr4:13494431-13494450 None:intergenic 35.0%
CTATGACATCTTATGGAAGA+AGG + Chr4:13495486-13495505 None:intergenic 35.0%
CTTCTTCCATAAGATGTCAT+AGG - Chr4:13495484-13495503 MsG0480019028.01.T01:intron 35.0%
GAAGCCAATAATTCTTACAG+TGG + Chr4:13494380-13494399 None:intergenic 35.0%
GCTATTATGGCCTGTATTAA+GGG + Chr4:13493547-13493566 None:intergenic 35.0%
TGCTATTATGGCCTGTATTA+AGG + Chr4:13493548-13493567 None:intergenic 35.0%
TTCATGAAAGTGATGTCGTT+AGG + Chr4:13494964-13494983 None:intergenic 35.0%
TTCCAGAAAATGGTGACAAA+AGG - Chr4:13495155-13495174 MsG0480019028.01.T01:intron 35.0%
TTCCTAACATAGCAAAGCTA+GGG + Chr4:13492732-13492751 None:intergenic 35.0%
! AAGCACAAGTTGACAATGAT+GGG - Chr4:13495245-13495264 MsG0480019028.01.T01:intron 35.0%
! AGGATTTGCTTAAGACGAAA+AGG - Chr4:13496165-13496184 MsG0480019028.01.T01:intron 35.0%
! ATCCTTTTGTCACCATTTTC+TGG + Chr4:13495160-13495179 None:intergenic 35.0%
! CAATGCTTACACAAACCTTT+TGG - Chr4:13494861-13494880 MsG0480019028.01.T01:intron 35.0%
! CCGTTCCTCAATTTGTTTAA+AGG - Chr4:13493200-13493219 MsG0480019028.01.T01:CDS 35.0%
! GTCTGCAATATTTTCAATGC+AGG + Chr4:13492986-13493005 None:intergenic 35.0%
! TAAGCACAAGTTGACAATGA+TGG - Chr4:13495244-13495263 MsG0480019028.01.T01:intron 35.0%
! TAGCTTTGCTATGTTAGGAA+GGG - Chr4:13492732-13492751 MsG0480019028.01.T01:CDS 35.0%
!! AATGTGGAGTGTGTTATTTC+AGG + Chr4:13494619-13494638 None:intergenic 35.0%
!! ACAAACCTTTTGGCTATAAC+TGG - Chr4:13494871-13494890 MsG0480019028.01.T01:intron 35.0%
!! GCCAACGTCTATTTTAAATC+AGG - Chr4:13495894-13495913 MsG0480019028.01.T01:intron 35.0%
!! GCTGTTGTTGGTTTCAATTA+TGG - Chr4:13495200-13495219 MsG0480019028.01.T01:intron 35.0%
!! TCTAGTTGTTTTGTAGTGCA+AGG - Chr4:13492785-13492804 MsG0480019028.01.T01:CDS 35.0%
!!! CTAGGTTAGTTTTAGGGTTA+GGG + Chr4:13493475-13493494 None:intergenic 35.0%
!!! GGGTTGGTCAAATACATTTT+TGG + Chr4:13493182-13493201 None:intergenic 35.0%
!!! TCTAGGTTAGTTTTAGGGTT+AGG + Chr4:13493476-13493495 None:intergenic 35.0%
!!! TGTCACCATTTTCTGGAATT+TGG + Chr4:13495153-13495172 None:intergenic 35.0%
!!! TTCGTTTTTTTTAGGGTGGT+TGG - Chr4:13495096-13495115 MsG0480019028.01.T01:intron 35.0%
AAACAAATTGAGGAACGGGT+TGG + Chr4:13493198-13493217 None:intergenic 40.0%
AGCCATGAACAAAAGAGAAG+GGG - Chr4:13492581-13492600 MsG0480019028.01.T01:three_prime_UTR 40.0%
AGGAAACAGAGAAAAATGGC+AGG - Chr4:13495533-13495552 MsG0480019028.01.T01:intron 40.0%
ATAGCATATCTACAGAGGAG+GGG - Chr4:13492449-13492468 MsG0480019028.01.T01:three_prime_UTR 40.0%
ATCAAAGGAGGATGAGATGA+AGG - Chr4:13492631-13492650 MsG0480019028.01.T01:three_prime_UTR 40.0%
ATTCACCAAAATCAACGCTC+CGG - Chr4:13495277-13495296 MsG0480019028.01.T01:intron 40.0%
ATTTGACGCTGACAGGAAAT+AGG + Chr4:13495427-13495446 None:intergenic 40.0%
ATTTGTGCCGTAGAAGCAAT+TGG + Chr4:13495934-13495953 None:intergenic 40.0%
CGATGGGACCATGATTTAAA+TGG - Chr4:13494429-13494448 MsG0480019028.01.T01:intron 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - Chr4:13496534-13496553 MsG0480019028.01.T01:intron 40.0%
CTTACTTACTAAAGCTTGGC+AGG - Chr4:13493440-13493459 MsG0480019028.01.T01:CDS 40.0%
CTTCCTAACATAGCAAAGCT+AGG + Chr4:13492733-13492752 None:intergenic 40.0%
CTTGATTGAATCATCTGAGG+TGG - Chr4:13496202-13496221 MsG0480019028.01.T01:intron 40.0%
GAGAAGCAGCCAATAAATAC+AGG + Chr4:13494720-13494739 None:intergenic 40.0%
GATAGCATATCTACAGAGGA+GGG - Chr4:13492448-13492467 MsG0480019028.01.T01:three_prime_UTR 40.0%
GCGGTTTCATAACACTTGTA+AGG + Chr4:13495023-13495042 None:intergenic 40.0%
GGAGAACAATCTCCTTTCAA+AGG - Chr4:13492656-13492675 MsG0480019028.01.T01:exon 40.0%
GGTGTCCAAATTCCAGAAAA+TGG - Chr4:13495145-13495164 MsG0480019028.01.T01:intron 40.0%
TATGGAGACAAGACAACTCA+CGG + Chr4:13492906-13492925 None:intergenic 40.0%
TCAGGTAGACAGTTTCTATG+GGG - Chr4:13496535-13496554 MsG0480019028.01.T01:intron 40.0%
TCGTTAGGATCCTTCTTAGA+TGG + Chr4:13494949-13494968 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - Chr4:13496533-13496552 MsG0480019028.01.T01:intron 40.0%
TTATCGCAACAATTCAGGAG+CGG + Chr4:13495042-13495061 None:intergenic 40.0%
! ACTCCTTCTTCAGTTTTGCA+AGG - Chr4:13495775-13495794 MsG0480019028.01.T01:intron 40.0%
! ATCCCCTTCTCTTTTGTTCA+TGG + Chr4:13492586-13492605 None:intergenic 40.0%
! GGTGTTACCAATTGCTTCTA+CGG - Chr4:13495924-13495943 MsG0480019028.01.T01:intron 40.0%
! GTTTGAGTTCATGACACTCA+AGG - Chr4:13495316-13495335 MsG0480019028.01.T01:intron 40.0%
! TTCTTCAGTTTTGCAAGGCA+CGG - Chr4:13495780-13495799 MsG0480019028.01.T01:intron 40.0%
!! AACCCTAGCTTTGCTATGTT+AGG - Chr4:13492727-13492746 MsG0480019028.01.T01:CDS 40.0%
!! AACCTTTTGGCTATAACTGG+TGG - Chr4:13494874-13494893 MsG0480019028.01.T01:intron 40.0%
!! ACCTTTTGGCTATAACTGGT+GGG - Chr4:13494875-13494894 MsG0480019028.01.T01:intron 40.0%
!! CTAGCTTTGCTATGTTAGGA+AGG - Chr4:13492731-13492750 MsG0480019028.01.T01:CDS 40.0%
!!! AATTTCCGGAGCGTTGATTT+TGG + Chr4:13495285-13495304 None:intergenic 40.0%
AAACAAAAGACCTAGCCGGA+GGG - Chr4:13492681-13492700 MsG0480019028.01.T01:CDS 45.0%
AAAGGAGGATGAGATGAAGG+AGG - Chr4:13492634-13492653 MsG0480019028.01.T01:three_prime_UTR 45.0%
AAGGAGGATGAGATGAAGGA+GGG - Chr4:13492635-13492654 MsG0480019028.01.T01:three_prime_UTR 45.0%
AATGGCGTGTATTAAGGGTG+AGG + Chr4:13493594-13493613 None:intergenic 45.0%
ACAGAGGAGGAGAAGGTTAT+TGG - Chr4:13495353-13495372 MsG0480019028.01.T01:intron 45.0%
AGAAAAATGGCAGGAAGAGC+AGG - Chr4:13495542-13495561 MsG0480019028.01.T01:intron 45.0%
AGAAGGGGATGAGGTGAAAA+GGG - Chr4:13492596-13492615 MsG0480019028.01.T01:three_prime_UTR 45.0%
AGGAGGAGAAGGTTATTGGT+AGG - Chr4:13495357-13495376 MsG0480019028.01.T01:intron 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + Chr4:13496372-13496391 None:intergenic 45.0%
AGGTGAAAAGGGTGAGAGAA+AGG - Chr4:13492607-13492626 MsG0480019028.01.T01:three_prime_UTR 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - Chr4:13496372-13496391 MsG0480019028.01.T01:intron 45.0%
CAACGACACAGTGTTATGTG+TGG + Chr4:13496141-13496160 None:intergenic 45.0%
CAACTGCTACATACTGCAAC+AGG - Chr4:13493136-13493155 MsG0480019028.01.T01:intron 45.0%
CAGTGTTATGTGTGGACATC+TGG + Chr4:13496133-13496152 None:intergenic 45.0%
CATGGAAATTTGACGCTGAC+AGG + Chr4:13495434-13495453 None:intergenic 45.0%
CTGGAGAAAGGTTATGCCAA+CGG + Chr4:13493098-13493117 None:intergenic 45.0%
CTGTTGCAGTATGTAGCAGT+TGG + Chr4:13493138-13493157 None:intergenic 45.0%
GAAAAATGGCAGGAAGAGCA+GGG - Chr4:13495543-13495562 MsG0480019028.01.T01:intron 45.0%
GAACAAAAGAGAAGGGGATG+AGG - Chr4:13492587-13492606 MsG0480019028.01.T01:three_prime_UTR 45.0%
GGAGAAACAAAAGACCTAGC+CGG - Chr4:13492677-13492696 MsG0480019028.01.T01:CDS 45.0%
GGAGGAGAAGGTTATTGGTA+GGG - Chr4:13495358-13495377 MsG0480019028.01.T01:intron 45.0%
GGATAGCATATCTACAGAGG+AGG - Chr4:13492447-13492466 MsG0480019028.01.T01:three_prime_UTR 45.0%
GGCAACTGTACGAAGAGATT+TGG - Chr4:13495124-13495143 MsG0480019028.01.T01:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + Chr4:13496371-13496390 None:intergenic 45.0%
GGTGAAAAGGGTGAGAGAAA+GGG - Chr4:13492608-13492627 MsG0480019028.01.T01:three_prime_UTR 45.0%
GTGCCTTGCAAAACTGAAGA+AGG + Chr4:13495781-13495800 None:intergenic 45.0%
TAGCATATCTACAGAGGAGG+GGG - Chr4:13492450-13492469 MsG0480019028.01.T01:three_prime_UTR 45.0%
TATGAAGCTTCACTGTTCCC+TGG - Chr4:13496371-13496390 MsG0480019028.01.T01:intron 45.0%
TATGGCCTGTATTAAGGGTG+AGG + Chr4:13493542-13493561 None:intergenic 45.0%
TCCCACCAGTTATAGCCAAA+AGG + Chr4:13494879-13494898 None:intergenic 45.0%
TGAGAGAAAGGGATCAAAGG+AGG - Chr4:13492619-13492638 MsG0480019028.01.T01:three_prime_UTR 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + Chr4:13496357-13496376 None:intergenic 45.0%
TTTGAATGGCAAGCTACCTG+AGG - Chr4:13495959-13495978 MsG0480019028.01.T01:intron 45.0%
! AAGTACGTGTCGCTCATGTA+TGG - Chr4:13494917-13494936 MsG0480019028.01.T01:intron 45.0%
! GTTCTTGACAGTGCTGTTGT+TGG - Chr4:13495188-13495207 MsG0480019028.01.T01:intron 45.0%
! TAACACTGTGTCGTTGTCTG+AGG - Chr4:13496145-13496164 MsG0480019028.01.T01:intron 45.0%
!! CTGAAGAAGGAGTATCACAG+CGG + Chr4:13495768-13495787 None:intergenic 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + Chr4:13496482-13496501 None:intergenic 45.0%
!!! TTTTTAGGGTGGTTGGATGC+AGG - Chr4:13495103-13495122 MsG0480019028.01.T01:intron 45.0%
AAAAGCCCAAAGCCAATCCC+AGG + Chr4:13496392-13496411 None:intergenic 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + Chr4:13496391-13496410 None:intergenic 50.0%
AACAAAAGACCTAGCCGGAG+GGG - Chr4:13492682-13492701 MsG0480019028.01.T01:CDS 50.0%
ACAAGACAACTCACGGTTGG+AGG + Chr4:13492899-13492918 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - Chr4:13496541-13496560 MsG0480019028.01.T01:intron 50.0%
AGTTGGCGAGAACATGGAAG+GGG + Chr4:13493121-13493140 None:intergenic 50.0%
CAGTTGGCGAGAACATGGAA+GGG + Chr4:13493122-13493141 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + Chr4:13496468-13496487 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - Chr4:13496465-13496484 MsG0480019028.01.T01:intron 50.0%
CTTGTGCCAGTACAGACCAA+GGG - Chr4:13496506-13496525 MsG0480019028.01.T01:intron 50.0%
GAAACAAAAGACCTAGCCGG+AGG - Chr4:13492680-13492699 MsG0480019028.01.T01:CDS 50.0%
GACCTCCTCACCCTTAATAC+AGG - Chr4:13493534-13493553 MsG0480019028.01.T01:intron 50.0%
GAGAAGGGGATGAGGTGAAA+AGG - Chr4:13492595-13492614 MsG0480019028.01.T01:three_prime_UTR 50.0%
GAGACAAGACAACTCACGGT+TGG + Chr4:13492902-13492921 None:intergenic 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - Chr4:13496420-13496439 MsG0480019028.01.T01:intron 50.0%
GGGTGAGAGAAAGGGATCAA+AGG - Chr4:13492616-13492635 MsG0480019028.01.T01:three_prime_UTR 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - Chr4:13496559-13496578 MsG0480019028.01.T01:intron 50.0%
GTCATGTAAGCTTCCACCTC+AGG + Chr4:13495978-13495997 None:intergenic 50.0%
TGTAGCAGTTGGCGAGAACA+TGG + Chr4:13493127-13493146 None:intergenic 50.0%
! CGTATTGAGTTGCACAGAGG+AGG - Chr4:13495340-13495359 MsG0480019028.01.T01:intron 50.0%
! GCTTTTGTCTGCTGCAGCTA+TGG - Chr4:13494837-13494856 MsG0480019028.01.T01:intron 50.0%
! GGACGTATTGAGTTGCACAG+AGG - Chr4:13495337-13495356 MsG0480019028.01.T01:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - Chr4:13496384-13496403 MsG0480019028.01.T01:intron 50.0%
AAAGGTTTCCTCGGGCCAGA+CGG - Chr4:13496590-13496609 MsG0480019028.01.T01:intron 55.0%
ACAGACCAAGGGACAGTCTC+AGG - Chr4:13496517-13496536 MsG0480019028.01.T01:intron 55.0%
ACATGGAAGGGGCTGGAGAA+AGG + Chr4:13493110-13493129 None:intergenic 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - Chr4:13496431-13496450 MsG0480019028.01.T01:intron 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - Chr4:13496582-13496601 MsG0480019028.01.T01:intron 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - Chr4:13496682-13496701 MsG0480019028.01.T01:CDS 55.0%
ATCGAAGGTGGCAGCATCAG+TGG + Chr4:13494656-13494675 None:intergenic 55.0%
ATTGATGCCGGATGTGGGGT+AGG - Chr4:13492489-13492508 MsG0480019028.01.T01:three_prime_UTR 55.0%
CCTACAGATTGCACCTCCGA+CGG + Chr4:13492534-13492553 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - Chr4:13496621-13496640 MsG0480019028.01.T01:intron 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + Chr4:13496623-13496642 None:intergenic 55.0%
CCTTGTGCCAGTACAGACCA+AGG - Chr4:13496505-13496524 MsG0480019028.01.T01:intron 55.0%
GAATGGCAAGCTACCTGAGG+TGG - Chr4:13495962-13495981 MsG0480019028.01.T01:intron 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + Chr4:13496515-13496534 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - Chr4:13496581-13496600 MsG0480019028.01.T01:intron 55.0%
GAGTTGCACAGAGGAGGAGA+AGG - Chr4:13495346-13495365 MsG0480019028.01.T01:intron 55.0%
GCAGTTGGCGAGAACATGGA+AGG + Chr4:13493123-13493142 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - Chr4:13496377-13496396 MsG0480019028.01.T01:intron 55.0%
GGCCTGTATTAAGGGTGAGG+AGG + Chr4:13493539-13493558 None:intergenic 55.0%
GGCGTGTATTAAGGGTGAGG+AGG + Chr4:13493591-13493610 None:intergenic 55.0%
GTCGGATTGATGCCGGATGT+GGG - Chr4:13492484-13492503 MsG0480019028.01.T01:three_prime_UTR 55.0%
GTCTACCTGAGACTGTCCCT+TGG + Chr4:13496525-13496544 None:intergenic 55.0%
TCGGATTGATGCCGGATGTG+GGG - Chr4:13492485-13492504 MsG0480019028.01.T01:three_prime_UTR 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - Chr4:13496613-13496632 MsG0480019028.01.T01:intron 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + Chr4:13496508-13496527 None:intergenic 55.0%
! CGGAGGTGCAATCTGTAGGA+TGG - Chr4:13492535-13492554 MsG0480019028.01.T01:three_prime_UTR 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - Chr4:13496407-13496426 MsG0480019028.01.T01:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + Chr4:13496570-13496589 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + Chr4:13496571-13496590 None:intergenic 55.0%
! TGGACATCTGGCTCACACCT+TGG + Chr4:13496121-13496140 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - Chr4:13496572-13496591 MsG0480019028.01.T01:intron 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - Chr4:13496383-13496402 MsG0480019028.01.T01:intron 55.0%
AAAGAAGGCCTCCTTCCGGG+GGG - Chr4:13496435-13496454 MsG0480019028.01.T01:intron 60.0%
AGCATCAGTGGCGCATCGGA+AGG + Chr4:13494644-13494663 None:intergenic 60.0%
ATCTACAGAGGAGGGGGCTC+CGG - Chr4:13492456-13492475 MsG0480019028.01.T01:three_prime_UTR 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - Chr4:13496434-13496453 MsG0480019028.01.T01:intron 60.0%
CATCAGTGGCGCATCGGAAG+GGG + Chr4:13494642-13494661 None:intergenic 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - Chr4:13496620-13496639 MsG0480019028.01.T01:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + Chr4:13496624-13496643 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + Chr4:13496667-13496686 None:intergenic 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - Chr4:13496665-13496684 MsG0480019028.01.T01:CDS 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + Chr4:13496666-13496685 None:intergenic 60.0%
GATTGCACCTCCGACGGTGA+TGG + Chr4:13492528-13492547 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - Chr4:13496433-13496452 MsG0480019028.01.T01:intron 60.0%
GCATCAGTGGCGCATCGGAA+GGG + Chr4:13494643-13494662 None:intergenic 60.0%
GGAGGAGGTCGGATTGATGC+CGG - Chr4:13492477-13492496 MsG0480019028.01.T01:three_prime_UTR 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - Chr4:13496432-13496451 MsG0480019028.01.T01:intron 60.0%
GGCATCAATCCGACCTCCTC+CGG + Chr4:13492478-13492497 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + Chr4:13496351-13496370 None:intergenic 60.0%
GGTCGGATTGATGCCGGATG+TGG - Chr4:13492483-13492502 MsG0480019028.01.T01:three_prime_UTR 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - Chr4:13496411-13496430 MsG0480019028.01.T01:intron 60.0%
TCGGCACCGTCGGATCACTA+AGG + Chr4:13496691-13496710 None:intergenic 60.0%
TGGCACACTGCCATCACCGT+CGG - Chr4:13492515-13492534 MsG0480019028.01.T01:three_prime_UTR 60.0%
TGGCAGCATCAGTGGCGCAT+CGG + Chr4:13494648-13494667 None:intergenic 60.0%
! AGATGCGGACTACCTGCACC+TGG - Chr4:13496336-13496355 MsG0480019028.01.T01:intron 60.0%
! CCGTCGGAGGTGCAATCTGT+AGG - Chr4:13492531-13492550 MsG0480019028.01.T01:three_prime_UTR 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + Chr4:13496567-13496586 None:intergenic 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - Chr4:13496562-13496581 MsG0480019028.01.T01:intron 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - Chr4:13496404-13496423 MsG0480019028.01.T01:intron 60.0%
AAGAAGGCCTCCTTCCGGGG+GGG - Chr4:13496436-13496455 MsG0480019028.01.T01:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - Chr4:13496654-13496673 MsG0480019028.01.T01:intron 65.0%
CACACTGCCATCACCGTCGG+AGG - Chr4:13492518-13492537 MsG0480019028.01.T01:three_prime_UTR 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + Chr4:13496608-13496627 None:intergenic 65.0%
GATGCCGGATGTGGGGTAGG+TGG - Chr4:13492492-13492511 MsG0480019028.01.T01:three_prime_UTR 65.0%
GCCACCACCTACCCCACATC+CGG + Chr4:13492499-13492518 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + Chr4:13496415-13496434 None:intergenic 65.0%
GCCTTTCCACTCGGCACCGT+CGG + Chr4:13496701-13496720 None:intergenic 65.0%
GGCGAGAACATGGAAGGGGC+TGG + Chr4:13493117-13493136 None:intergenic 65.0%
GGCGCATCGGAAGGGGAATG+TGG + Chr4:13494635-13494654 None:intergenic 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - Chr4:13496597-13496616 MsG0480019028.01.T01:intron 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - Chr4:13496553-13496572 MsG0480019028.01.T01:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + Chr4:13496662-13496681 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + Chr4:13496663-13496682 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - Chr4:13496692-13496711 MsG0480019028.01.T01:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+AGG - Chr4:13496697-13496716 MsG0480019028.01.T01:CDS 65.0%
ACTGATGGCTCGAGCCCCCC+CGG + Chr4:13496453-13496472 None:intergenic 70.0%
GACCTAGCCGGAGGGGTGAG+CGG - Chr4:13492689-13492708 MsG0480019028.01.T01:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG - Chr4:13496653-13496672 MsG0480019028.01.T01:intron 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + Chr4:13496601-13496620 None:intergenic 70.0%
GCCGGATGTGGGGTAGGTGG+TGG - Chr4:13492495-13492514 MsG0480019028.01.T01:three_prime_UTR 70.0%
TACAGAGGAGGGGGCTCCGG+AGG - Chr4:13492459-13492478 MsG0480019028.01.T01:three_prime_UTR 70.0%
AGAGGAGGGGGCTCCGGAGG+AGG - Chr4:13492462-13492481 MsG0480019028.01.T01:three_prime_UTR 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + Chr4:13496449-13496468 None:intergenic 75.0%
CCTAGCGCCGCTCACCCCTC+CGG + Chr4:13492699-13492718 None:intergenic 75.0%
CGGAGGGGTGAGCGGCGCTA+GGG - Chr4:13492697-13492716 MsG0480019028.01.T01:CDS 75.0%
GAGGGGGCTCCGGAGGAGGT+CGG - Chr4:13492466-13492485 MsG0480019028.01.T01:three_prime_UTR 75.0%
GGGTGAGCGGCGCTAGGGAG+TGG - Chr4:13492702-13492721 MsG0480019028.01.T01:CDS 75.0%
! CCGGAGGGGTGAGCGGCGCT+AGG - Chr4:13492696-13492715 MsG0480019028.01.T01:CDS 80.0%
! CGCCGCTCACCCCTCCGGCT+AGG + Chr4:13492694-13492713 None:intergenic 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + Chr4:13496446-13496465 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 13492445 13496724 13492445 ID=MsG0480019028.01;Name=MsG0480019028.01
Chr4 mRNA 13492445 13496724 13492445 ID=MsG0480019028.01.T01;Parent=MsG0480019028.01;Name=MsG0480019028.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.87|1|1|8|228|331
Chr4 exon 13492445 13492840 13492445 ID=MsG0480019028.01.T01:exon:8448;Parent=MsG0480019028.01.T01
Chr4 exon 13492949 13493078 13492949 ID=MsG0480019028.01.T01:exon:8447;Parent=MsG0480019028.01.T01
Chr4 exon 13493169 13493253 13493169 ID=MsG0480019028.01.T01:exon:8446;Parent=MsG0480019028.01.T01
Chr4 exon 13493411 13493484 13493411 ID=MsG0480019028.01.T01:exon:8445;Parent=MsG0480019028.01.T01
Chr4 exon 13493576 13493672 13493576 ID=MsG0480019028.01.T01:exon:8444;Parent=MsG0480019028.01.T01
Chr4 exon 13493795 13494059 13493795 ID=MsG0480019028.01.T01:exon:8443;Parent=MsG0480019028.01.T01
Chr4 exon 13494236 13494350 13494236 ID=MsG0480019028.01.T01:exon:8442;Parent=MsG0480019028.01.T01
Chr4 exon 13496663 13496724 13496663 ID=MsG0480019028.01.T01:exon:8441;Parent=MsG0480019028.01.T01
Chr4 CDS 13496663 13496724 13496663 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 CDS 13494236 13494350 13494236 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 CDS 13493795 13494059 13493795 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 CDS 13493576 13493672 13493576 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 CDS 13493411 13493484 13493411 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 CDS 13493169 13493253 13493169 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 CDS 13492949 13493078 13492949 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 CDS 13492673 13492840 13492673 ID=MsG0480019028.01.T01:cds;Parent=MsG0480019028.01.T01
Chr4 three_prime_UTR 13492445 13492672 13492445 ID=MsG0480019028.01.T01:three_prime_utr;Parent=MsG0480019028.01.T01
Gene Sequence

>MsG0480019028.01.T01

ATGGATAGCATATCTACAGAGGAGGGGGCTCCGGAGGAGGTCGGATTGATGCCGGATGTGGGATTAAGAAATAGTATATTGCTTTTGTCTGCTGCAGCTATGGCCAATGCTTACACAAACCTTTTGGCTATAACTGGTGGGAAAAGAGATCTCAAGATGAAAGTACGTGTCGCTCATGGTGGTTGGATGCAGGCAACTGTACGAAGAGATTTGGTGTCCAAATTCCAGAAAATGGTGACAAAAGGATGTGCATACGTTCTTGACAGTGCTGTTGTTGGTTTCAATTATGGCCCTTTTAAGCTTATAAGTCATAAGCACAAGTTGACAATGATGGGTCACTCAAAATTCACCAAAATCAACGCTCCGGAAATTCCGATGAATGTGTTTGAGTTCATGACACTCAAGGACGTATTGAGTTGCACAGAGGAGGAGAAGGTTATTGATGTCATAGGTCATGTAATTACAAAGGATACTTTAAAGGAAACAGAGAAAAATGGCAGGAAGAGCAGGGTCATTGATTTAACTCTTGAAGATATAGAGAGAAATCATATTCACGTCTCTCTTTGGACTGAGTTTACTGACAAAGTGACTAGCTTTTTTAATGCTCAAGAGGGTGCTATGGGTGTTACCAATTGCTTCTACGGCACAAATATTATTTTGAATGGCAAGCTACCTGAGGTGGAAGCTTACATGACAAAGTTGAAATCTATTGATATAGATATAAGCCAAGGTGTGAGCCAGATGTCCACACATAACACTGTGTCGTTGTCTGAGGATTTGCTTAAGACGAAAAGGATGACGATTGAAAACTTGATTGAATCATCTGAGTATGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGCAGCTTAGGTGGAAGGCAAAGAAGGCCTCCTTCCGGGGGGGCTCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAG

Protein sequence

>MsG0480019028.01.T01

MDSISTEEGAPEEVGLMPDVGLRNSILLLSAAAMANAYTNLLAITGGKRDLKMKVRVAHGGWMQATVRRDLVSKFQKMVTKGCAYVLDSAVVGFNYGPFKLISHKHKLTMMGHSKFTKINAPEIPMNVFEFMTLKDVLSCTEEEKVIDVIGHVITKDTLKETEKNGRKSRVIDLTLEDIERNHIHVSLWTEFTDKVTSFFNAQEGAMGVTNCFYGTNIILNGKLPEVEAYMTKLKSIDIDISQGVSQMSTHNTVSLSEDLLKTKRMTIENLIESSEYVKMRTTCTWTERPYEASLFPGIGFGLFLRSLGGRQRRPPSGGARAISEIPLWKS*