AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043748.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043748.01.T01 MTR_8g040150 97.674 129 3 0 1 129 5 133 9.66e-93 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043748.01.T01 AT3G12260 64.062 128 44 2 1 128 7 132 1.19e-59 180

Find 19 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGAGATTCACTGAGTT+TGG 0.328144 8:+29951003 None:intergenic
CTACGTACTGACCGACGATA+TGG 0.351109 8:+29947588 None:intergenic
GTACCTTGGGATTGGTGATA+TGG 0.375335 8:+29950842 None:intergenic
TATGGTGCCTCTGCTTTGAA+TGG 0.475342 8:+29947606 None:intergenic
AGAGTTGGCCTCAAAAGAGC+AGG 0.484872 8:-29947540 MsG0880043748.01.T01:CDS
GAGGGAAGGTACCTTGGGAT+TGG 0.511509 8:+29950834 None:intergenic
GAGAGATTCACTGAGTTTGG+TGG 0.555500 8:+29951006 None:intergenic
TAGATCTTTACCTACCGTCA+TGG 0.574841 8:-29950941 MsG0880043748.01.T01:CDS
CAGTACGTAGTTGGCCGTCG+TGG 0.592894 8:-29947575 MsG0880043748.01.T01:CDS
TGTAGAACGAAGCTGAGAAA+CGG 0.594989 8:+29950891 None:intergenic
ATCGTCGGTCAGTACGTAGT+TGG 0.604555 8:-29947584 MsG0880043748.01.T01:CDS
TGGACTAGAGCAGCAAGAGT+TGG 0.610087 8:-29947555 MsG0880043748.01.T01:CDS
TTGTAAACTTCCATGACGGT+AGG 0.630456 8:+29950931 None:intergenic
TGACCATATCACCAATCCCA+AGG 0.641483 8:-29950845 MsG0880043748.01.T01:intron
AAGCAGAGGCACCATATCGT+CGG 0.645960 8:-29947599 MsG0880043748.01.T01:CDS
TTGTGAACCATTCAAAGCAG+AGG 0.651015 8:-29947613 MsG0880043748.01.T01:CDS
GAGTTGGCCTCAAAAGAGCA+GGG 0.675119 8:-29947539 MsG0880043748.01.T01:CDS
AAGATTGTAAACTTCCATGA+CGG 0.676744 8:+29950927 None:intergenic
CTTGCTGCTCTAGTCCACGA+CGG 0.786413 8:+29947561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATATTTATACAAAAAA+TGG - Chr8:29949936-29949955 MsG0880043748.01.T01:intron 10.0%
!!! ATTTATATTTAATTTCATGA+AGG - Chr8:29947801-29947820 MsG0880043748.01.T01:intron 10.0%
!! AAAAAATAGAAAATGGAAAT+TGG + Chr8:29947768-29947787 None:intergenic 15.0%
!! AAAAATACAATAACTTCAAA+TGG + Chr8:29950518-29950537 None:intergenic 15.0%
!! ACATTAACTTACAAAAAAAA+GGG + Chr8:29950549-29950568 None:intergenic 15.0%
!! TAATTATTGTTGGAAAAAAA+AGG - Chr8:29950044-29950063 MsG0880043748.01.T01:intron 15.0%
!! TGAATAATTTACAGAAAATT+TGG + Chr8:29948642-29948661 None:intergenic 15.0%
!! TTAGAATTATTGATATATCT+AGG + Chr8:29949545-29949564 None:intergenic 15.0%
!!! TAAAAGCTTTTTTTTTACAA+TGG - Chr8:29948401-29948420 MsG0880043748.01.T01:intron 15.0%
!!! TCATTTTCTCAAAATTATAT+TGG + Chr8:29948180-29948199 None:intergenic 15.0%
!!! TTAATTGTGTATTCTTTTAT+CGG - Chr8:29947932-29947951 MsG0880043748.01.T01:intron 15.0%
!! AAATGAATGGATATATGAAT+TGG - Chr8:29947860-29947879 MsG0880043748.01.T01:intron 20.0%
!! AATTAAAGATTAGCAAACAA+AGG + Chr8:29950295-29950314 None:intergenic 20.0%
!! AGTGAATGAAGTAAAAATAA+TGG + Chr8:29949912-29949931 None:intergenic 20.0%
!! ATAAAGATTGATATTCTCTT+AGG - Chr8:29948097-29948116 MsG0880043748.01.T01:intron 20.0%
!! GACACATTTATAATTATTGT+TGG - Chr8:29950034-29950053 MsG0880043748.01.T01:intron 20.0%
!! GACATTAACTTACAAAAAAA+AGG + Chr8:29950550-29950569 None:intergenic 20.0%
!! GATTTCAAATATACTTGATT+TGG - Chr8:29948559-29948578 MsG0880043748.01.T01:intron 20.0%
!! TTATTATAAGATAGAGAAGA+AGG + Chr8:29947712-29947731 None:intergenic 20.0%
!!! AATGGATTTTAAAAGATGTT+AGG - Chr8:29948419-29948438 MsG0880043748.01.T01:intron 20.0%
!!! AGTGTTTTGTATAGATTATA+CGG - Chr8:29948273-29948292 MsG0880043748.01.T01:intron 20.0%
!!! ATTATTGATATTCTGAAACA+TGG + Chr8:29948902-29948921 None:intergenic 20.0%
!!! CTAATCTTTAATTTGAAAAC+GGG - Chr8:29950302-29950321 MsG0880043748.01.T01:intron 20.0%
!!! GAAGTTATTGTATTTTTGTA+AGG - Chr8:29950521-29950540 MsG0880043748.01.T01:intron 20.0%
!!! GAGATTATGGTTTTAAAATT+TGG - Chr8:29950238-29950257 MsG0880043748.01.T01:intron 20.0%
!!! GCTAATCTTTAATTTGAAAA+CGG - Chr8:29950301-29950320 MsG0880043748.01.T01:intron 20.0%
!!! TTTACAGAAAATTTGGTTTT+AGG + Chr8:29948635-29948654 None:intergenic 20.0%
!!! TTTATCGGATTTTGTTTTAT+TGG - Chr8:29947947-29947966 MsG0880043748.01.T01:intron 20.0%
!!! TTTTTTTGTAAGTTAATGTC+TGG - Chr8:29950550-29950569 MsG0880043748.01.T01:intron 20.0%
! AAAAATATCTGATACAAGAG+AGG - Chr8:29949615-29949634 MsG0880043748.01.T01:intron 25.0%
! AAATTCAAAGTTTGGTATGT+TGG - Chr8:29950101-29950120 MsG0880043748.01.T01:intron 25.0%
! AACCATGGTTAAAATTTCTA+GGG + Chr8:29949398-29949417 None:intergenic 25.0%
! AATCTAAAGAAACATAACTG+TGG + Chr8:29948235-29948254 None:intergenic 25.0%
! AATTCAAAGTTTGGTATGTT+GGG - Chr8:29950102-29950121 MsG0880043748.01.T01:intron 25.0%
! GAACATATATATAGAGCTAT+GGG + Chr8:29948854-29948873 None:intergenic 25.0%
! GATAGAAGTTATATATCGTA+TGG - Chr8:29950167-29950186 MsG0880043748.01.T01:intron 25.0%
! TATATATCGTATGGTATGAT+AGG - Chr8:29950176-29950195 MsG0880043748.01.T01:intron 25.0%
! TATCTACACCTATATACAAA+AGG + Chr8:29948080-29948099 None:intergenic 25.0%
! TGAACATATATATAGAGCTA+TGG + Chr8:29948855-29948874 None:intergenic 25.0%
! TTAACCTTTATATAGAGCTA+TGG - Chr8:29949513-29949532 MsG0880043748.01.T01:intron 25.0%
! TTGCTTGGTTAAAATCAATA+GGG - Chr8:29948375-29948394 MsG0880043748.01.T01:intron 25.0%
! TTGTAAAAATCTTCAAAGAC+AGG - Chr8:29949991-29950010 MsG0880043748.01.T01:intron 25.0%
! TTTATCTCTTCAAGTCAAAT+AGG - Chr8:29948687-29948706 MsG0880043748.01.T01:intron 25.0%
! TTTGAATTTCGATAAGCTTA+GGG + Chr8:29950090-29950109 None:intergenic 25.0%
!! AGATTGATTCAGAAAATGAA+TGG - Chr8:29947847-29947866 MsG0880043748.01.T01:intron 25.0%
!! AGTATATTTGAAATCACGTT+TGG + Chr8:29948554-29948573 None:intergenic 25.0%
!! AGTTATCTAACGGATATTTA+AGG - Chr8:29949831-29949850 MsG0880043748.01.T01:intron 25.0%
!! ATTTAGTGGCATAATTTTCA+AGG - Chr8:29950143-29950162 MsG0880043748.01.T01:intron 25.0%
!! GTGTTTTGTATAGATTATAC+GGG - Chr8:29948274-29948293 MsG0880043748.01.T01:intron 25.0%
!! TCTGTAAAGGAAGAAATTTT+TGG - Chr8:29950790-29950809 MsG0880043748.01.T01:intron 25.0%
!! TTTAGTGGCATAATTTTCAA+GGG - Chr8:29950144-29950163 MsG0880043748.01.T01:intron 25.0%
!! TTTGCATTCCTTTTGTATAT+AGG - Chr8:29948069-29948088 MsG0880043748.01.T01:intron 25.0%
!!! AATTTGCTATGATCCTATTA+TGG + Chr8:29949429-29949448 None:intergenic 25.0%
!!! ACTTTGATTTTCTTCTGTAA+AGG - Chr8:29950777-29950796 MsG0880043748.01.T01:intron 25.0%
!!! TATTGGTGATTAGTTACTTT+TGG - Chr8:29947964-29947983 MsG0880043748.01.T01:intron 25.0%
!!! TTTTAAAACCATAATCTCGA+CGG + Chr8:29950236-29950255 None:intergenic 25.0%
AAATAACAGGTTCAACTTGT+TGG + Chr8:29949184-29949203 None:intergenic 30.0%
AAATGCAGACAGTTATCTAA+CGG - Chr8:29949821-29949840 MsG0880043748.01.T01:intron 30.0%
AAGATTGTAAACTTCCATGA+CGG + Chr8:29947593-29947612 None:intergenic 30.0%
AATGTATGGATTCTTACTCA+AGG + Chr8:29950649-29950668 None:intergenic 30.0%
ACTAATATTTGTGGACATTC+AGG - Chr8:29950836-29950855 MsG0880043748.01.T01:intron 30.0%
AGAACAAGTAATATTCCCTA+GGG + Chr8:29947898-29947917 None:intergenic 30.0%
ATAGTGCTGTATTAAACACT+GGG - Chr8:29949798-29949817 MsG0880043748.01.T01:intron 30.0%
ATCCATGAGTTAGATAAGTA+AGG + Chr8:29949033-29949052 None:intergenic 30.0%
ATCGTTGTGACTAATATTTG+TGG - Chr8:29950827-29950846 MsG0880043748.01.T01:intron 30.0%
ATTATGGTATCAAAGAACCA+TGG + Chr8:29949413-29949432 None:intergenic 30.0%
CATTTCATGATGAGAAGATA+GGG - Chr8:29950262-29950281 MsG0880043748.01.T01:intron 30.0%
CTTGCTTGGTTAAAATCAAT+AGG - Chr8:29948374-29948393 MsG0880043748.01.T01:intron 30.0%
CTTTGAATTTCGATAAGCTT+AGG + Chr8:29950091-29950110 None:intergenic 30.0%
GAACCATGGTTAAAATTTCT+AGG + Chr8:29949399-29949418 None:intergenic 30.0%
GCTTATCGAAATTCAAAGTT+TGG - Chr8:29950093-29950112 MsG0880043748.01.T01:intron 30.0%
TATAAGATAGAGAAGAAGGA+AGG + Chr8:29947708-29947727 None:intergenic 30.0%
TCATTTCATGATGAGAAGAT+AGG - Chr8:29950261-29950280 MsG0880043748.01.T01:intron 30.0%
TGGCAATGATTATTCTCAAT+AGG - Chr8:29949774-29949793 MsG0880043748.01.T01:intron 30.0%
TGGTTCTTTGATACCATAAT+AGG - Chr8:29949413-29949432 MsG0880043748.01.T01:intron 30.0%
TGTAAATACTAGCTAACACT+GGG + Chr8:29949733-29949752 None:intergenic 30.0%
TGTAGTTGCTTATTGTCAAA+TGG - Chr8:29948443-29948462 MsG0880043748.01.T01:intron 30.0%
TGTATAGATTATACGGGATT+AGG - Chr8:29948280-29948299 MsG0880043748.01.T01:intron 30.0%
TTGTAAATACTAGCTAACAC+TGG + Chr8:29949734-29949753 None:intergenic 30.0%
! ATGAAATTTTCCATTGTCGA+AGG - Chr8:29949248-29949267 MsG0880043748.01.T01:intron 30.0%
! ATGCTCAAAACTATCTTTTG+TGG - Chr8:29949156-29949175 MsG0880043748.01.T01:intron 30.0%
! ATGGATAGTTGTTGTTACAA+GGG + Chr8:29948883-29948902 None:intergenic 30.0%
! TCTCAATTTTACTCTTGAAG+TGG - Chr8:29948331-29948350 MsG0880043748.01.T01:intron 30.0%
! TTTTACTCTTGAAGTGGATA+TGG - Chr8:29948337-29948356 MsG0880043748.01.T01:intron 30.0%
!! TACCCTAGAAATTTTAACCA+TGG - Chr8:29949393-29949412 MsG0880043748.01.T01:intron 30.0%
!! TTAGTGGCATAATTTTCAAG+GGG - Chr8:29950145-29950164 MsG0880043748.01.T01:intron 30.0%
!! TTGATTTTAACCAAGCAAGT+TGG + Chr8:29948373-29948392 None:intergenic 30.0%
!!! AGCTCTAAGTTTTTGTTTAC+TGG - Chr8:29949754-29949773 MsG0880043748.01.T01:intron 30.0%
!!! ATTGATATGCTGCTTTTCAA+GGG - Chr8:29950861-29950880 MsG0880043748.01.T01:CDS 30.0%
!!! TAGTTACTTTTGGATGTAGT+TGG - Chr8:29947974-29947993 MsG0880043748.01.T01:intron 30.0%
AATATAGCACAAGAGAGACT+AGG + Chr8:29948756-29948775 None:intergenic 35.0%
AATTATTCAAACAAGCCCGT+GGG + Chr8:29950585-29950604 None:intergenic 35.0%
ACAAGAATTCTCAATCAGCT+CGG + Chr8:29948512-29948531 None:intergenic 35.0%
ACATGTGCAAGTAGAATGTA+TGG + Chr8:29950663-29950682 None:intergenic 35.0%
AGATTGATATTCTCTTAGGC+AGG - Chr8:29948101-29948120 MsG0880043748.01.T01:intron 35.0%
AGGAAGAAAGATCATATCCT+AGG + Chr8:29948989-29949008 None:intergenic 35.0%
AGGTATTAGAGTCTTTCTCT+TGG - Chr8:29948715-29948734 MsG0880043748.01.T01:intron 35.0%
ATAAAGGTTAACAGAGCTCT+TGG + Chr8:29949504-29949523 None:intergenic 35.0%
ATCAATGAGTTGCAGAAGTA+AGG - Chr8:29949328-29949347 MsG0880043748.01.T01:intron 35.0%
ATCTCTTCAAGTCAAATAGG+AGG - Chr8:29948690-29948709 MsG0880043748.01.T01:intron 35.0%
CATAGTGCTGTATTAAACAC+TGG - Chr8:29949797-29949816 MsG0880043748.01.T01:intron 35.0%
CATGAGTTAGATAAGTAAGG+CGG + Chr8:29949030-29949049 None:intergenic 35.0%
CGACAAAGATTGCAAATAAC+AGG + Chr8:29949197-29949216 None:intergenic 35.0%
CTGATTGAGAATTCTTGTGT+AGG - Chr8:29948514-29948533 MsG0880043748.01.T01:intron 35.0%
GAAAATTTCATAGCGATCTG+TGG + Chr8:29949239-29949258 None:intergenic 35.0%
GAATTAACGTTACAATGCCT+AGG - Chr8:29948969-29948988 MsG0880043748.01.T01:intron 35.0%
GAGAACAAGTAATATTCCCT+AGG + Chr8:29947899-29947918 None:intergenic 35.0%
GTCTTTCTAAGTACCTTAGA+TGG - Chr8:29948789-29948808 MsG0880043748.01.T01:intron 35.0%
TGAGTGAAGTCACTTATGTA+TGG - Chr8:29948595-29948614 MsG0880043748.01.T01:intron 35.0%
TGGAATTGATTGAAACCCTA+GGG - Chr8:29947880-29947899 MsG0880043748.01.T01:intron 35.0%
TTACTCAAGGAAATACCATC+AGG + Chr8:29950636-29950655 None:intergenic 35.0%
TTGGAATTGATTGAAACCCT+AGG - Chr8:29947879-29947898 MsG0880043748.01.T01:intron 35.0%
TTTATTCGTTTCAGACCTGA+TGG - Chr8:29950618-29950637 MsG0880043748.01.T01:intron 35.0%
! ATCAGGTCTGAAACGAATAA+AGG + Chr8:29950619-29950638 None:intergenic 35.0%
! CATGGATAGTTGTTGTTACA+AGG + Chr8:29948884-29948903 None:intergenic 35.0%
! GTCACCATAGCTCTATATAA+AGG + Chr8:29949520-29949539 None:intergenic 35.0%
! TAAGTTGTTTCAGCCATGTT+AGG - Chr8:29950392-29950411 MsG0880043748.01.T01:intron 35.0%
! TACTTTTGGATGTAGTTGGA+AGG - Chr8:29947978-29947997 MsG0880043748.01.T01:intron 35.0%
! TCTAAGGTACTTAGAAAGAC+AGG + Chr8:29948789-29948808 None:intergenic 35.0%
! TTTGAGCATCCAACTTTTCA+GGG + Chr8:29949145-29949164 None:intergenic 35.0%
! TTTTGAGCATCCAACTTTTC+AGG + Chr8:29949146-29949165 None:intergenic 35.0%
!! AGAATGTTGTTGTTTCTCCA+CGG - Chr8:29949063-29949082 MsG0880043748.01.T01:intron 35.0%
!!! AAGAAATTTTTGGCCACGAA+AGG - Chr8:29950800-29950819 MsG0880043748.01.T01:intron 35.0%
!!! CATTGATATGCTGCTTTTCA+AGG - Chr8:29950860-29950879 MsG0880043748.01.T01:CDS 35.0%
!!! TGGTGATATGGTCATTTTTG+CGG + Chr8:29947666-29947685 None:intergenic 35.0%
!!! TTGATATGCTGCTTTTCAAG+GGG - Chr8:29950862-29950881 MsG0880043748.01.T01:CDS 35.0%
AAGATAGAGAAGAAGGAAGG+AGG + Chr8:29947705-29947724 None:intergenic 40.0%
AATCACGAACACCCAATGTT+TGG + Chr8:29950352-29950371 None:intergenic 40.0%
ACAACAACATTCTCCAGTTG+AGG + Chr8:29949056-29949075 None:intergenic 40.0%
ACAGAAGATCCCTGAAAAGT+TGG - Chr8:29949133-29949152 MsG0880043748.01.T01:intron 40.0%
ACTACAGCTGTCACTATCTA+AGG - Chr8:29949564-29949583 MsG0880043748.01.T01:intron 40.0%
AGATAGAGAAGAAGGAAGGA+GGG + Chr8:29947704-29947723 None:intergenic 40.0%
ATAACTTCCGGTAGTACAAG+AGG - Chr8:29949643-29949662 MsG0880043748.01.T01:intron 40.0%
ATGTTGGGTTTCTCAGTCTT+TGG - Chr8:29950117-29950136 MsG0880043748.01.T01:intron 40.0%
ATTATACGGGATTAGGCTTG+TGG - Chr8:29948287-29948306 MsG0880043748.01.T01:intron 40.0%
ATTGCGATGCACAATGACAA+GGG + Chr8:29950429-29950448 None:intergenic 40.0%
CAATTATTCAAACAAGCCCG+TGG + Chr8:29950586-29950605 None:intergenic 40.0%
CACAACGATAAAACCTTTCG+TGG + Chr8:29950816-29950835 None:intergenic 40.0%
CGCCTTACTTATCTAACTCA+TGG - Chr8:29949028-29949047 MsG0880043748.01.T01:intron 40.0%
CTTGAAGTGGATATGGAAGT+TGG - Chr8:29948344-29948363 MsG0880043748.01.T01:intron 40.0%
GAAGCAGAGACATAGATTCA+AGG + Chr8:29948473-29948492 None:intergenic 40.0%
GAATCTTCCTCTTGTACTAC+CGG + Chr8:29949653-29949672 None:intergenic 40.0%
GTTACAGTTGTCACCATCTA+AGG + Chr8:29948805-29948824 None:intergenic 40.0%
TAACCATAGTTGTTCTCAGC+CGG - Chr8:29948821-29948840 MsG0880043748.01.T01:intron 40.0%
TAGAGCTATGGGATAGTATC+CGG + Chr8:29948843-29948862 None:intergenic 40.0%
TAGATCTTTACCTACCGTCA+TGG - Chr8:29947576-29947595 MsG0880043748.01.T01:CDS 40.0%
TATCTGATACAAGAGAGGCT+AGG - Chr8:29949620-29949639 MsG0880043748.01.T01:intron 40.0%
TCAGAGAGATTCACTGAGTT+TGG + Chr8:29947517-29947536 None:intergenic 40.0%
TGAATCTATGTCTCTGCTTC+TGG - Chr8:29948473-29948492 MsG0880043748.01.T01:intron 40.0%
TGTAGAACGAAGCTGAGAAA+CGG + Chr8:29947629-29947648 None:intergenic 40.0%
TGTTGGGTTTCTCAGTCTTT+GGG - Chr8:29950118-29950137 MsG0880043748.01.T01:intron 40.0%
TTCAAGTCAAATAGGAGGCA+AGG - Chr8:29948695-29948714 MsG0880043748.01.T01:intron 40.0%
TTCTGTGAGACTGTTATGCT+CGG + Chr8:29949119-29949138 None:intergenic 40.0%
TTGTAAACTTCCATGACGGT+AGG + Chr8:29947589-29947608 None:intergenic 40.0%
TTGTCAAACCGTCGAGATTA+TGG - Chr8:29950225-29950244 MsG0880043748.01.T01:intron 40.0%
TTGTGAACCATTCAAAGCAG+AGG - Chr8:29950904-29950923 MsG0880043748.01.T01:CDS 40.0%
! AAGTTGGAAACCAACTTGCT+TGG - Chr8:29948360-29948379 MsG0880043748.01.T01:intron 40.0%
! AGGTCTGAAACGAATAAAGG+AGG + Chr8:29950616-29950635 None:intergenic 40.0%
! TCAGTCTTTGGGGAATTTAG+TGG - Chr8:29950129-29950148 MsG0880043748.01.T01:intron 40.0%
!! CTAAGTTTTGTGCATTGCCT+GGG - Chr8:29950326-29950345 MsG0880043748.01.T01:intron 40.0%
!! GTAATCGATTTGATGCATCG+AGG - Chr8:29950717-29950736 MsG0880043748.01.T01:intron 40.0%
!! TCTAAGTTTTGTGCATTGCC+TGG - Chr8:29950325-29950344 MsG0880043748.01.T01:intron 40.0%
!!! ATGGTCATTTTTGCGGATCT+CGG + Chr8:29947659-29947678 None:intergenic 40.0%
ACTGCACATTCCTTCGACAA+TGG + Chr8:29949261-29949280 None:intergenic 45.0%
AGAGAGGCTAGGATAACTTC+CGG - Chr8:29949631-29949650 MsG0880043748.01.T01:intron 45.0%
AGATAAGTAAGGCGGTGAAG+TGG + Chr8:29949022-29949041 None:intergenic 45.0%
ATCGCAATGTGTTCAGGTGT+TGG - Chr8:29950441-29950460 MsG0880043748.01.T01:intron 45.0%
ATTGTCGAAGGAATGTGCAG+TGG - Chr8:29949260-29949279 MsG0880043748.01.T01:intron 45.0%
CATTGCGATGCACAATGACA+AGG + Chr8:29950430-29950449 None:intergenic 45.0%
CTAACTCATGGATCCTCAAC+TGG - Chr8:29949040-29949059 MsG0880043748.01.T01:intron 45.0%
GAATTCTCAATCAGCTCGGT+AGG + Chr8:29948508-29948527 None:intergenic 45.0%
GAGAGATTCACTGAGTTTGG+TGG + Chr8:29947514-29947533 None:intergenic 45.0%
GGGTGTTCGTGATTGACATT+TGG - Chr8:29950358-29950377 MsG0880043748.01.T01:intron 45.0%
GGTGGAACTTCAACGTAAAG+TGG - Chr8:29949281-29949300 MsG0880043748.01.T01:intron 45.0%
GTTGGGTTTCTCAGTCTTTG+GGG - Chr8:29950119-29950138 MsG0880043748.01.T01:intron 45.0%
TAAGGCAGTCGATTGGTAGA+GGG - Chr8:29949346-29949365 MsG0880043748.01.T01:intron 45.0%
TAGCGATCTGTGGATTCTGA+AGG + Chr8:29949229-29949248 None:intergenic 45.0%
TATCCGGCTGAGAACAACTA+TGG + Chr8:29948827-29948846 None:intergenic 45.0%
TGAACAAAGTTCTCCAGTCG+AGG - Chr8:29949305-29949324 MsG0880043748.01.T01:intron 45.0%
TGACCATATCACCAATCCCA+AGG - Chr8:29947672-29947691 MsG0880043748.01.T01:intron 45.0%
TGTGGATGGTGCGTAATAGT+TGG - Chr8:29948305-29948324 MsG0880043748.01.T01:intron 45.0%
TTGTGCATCGCAATGTGTTC+AGG - Chr8:29950435-29950454 MsG0880043748.01.T01:intron 45.0%
! GGTTTTGCACACACCTAACA+TGG + Chr8:29950408-29950427 None:intergenic 45.0%
! GTACCTTGGGATTGGTGATA+TGG + Chr8:29947678-29947697 None:intergenic 45.0%
! GTGGATTCTGAAGGAAGTGA+TGG + Chr8:29949220-29949239 None:intergenic 45.0%
! TATGGTGCCTCTGCTTTGAA+TGG + Chr8:29950914-29950933 None:intergenic 45.0%
!! AAAAAAAAAAAAATAGAAAA+TGG + Chr8:29947775-29947794 None:intergenic 5.0%
!!! ATTTTCTATTTTTTTTTTTT+TGG - Chr8:29947774-29947793 MsG0880043748.01.T01:intron 5.0%
!!! TTTTCTATTTTTTTTTTTTT+GGG - Chr8:29947775-29947794 MsG0880043748.01.T01:intron 5.0%
AAGGCAGTCGATTGGTAGAG+GGG - Chr8:29949347-29949366 MsG0880043748.01.T01:intron 50.0%
AGAGAAGAAGGAAGGAGGGA+AGG + Chr8:29947700-29947719 None:intergenic 50.0%
ATCGTCGGTCAGTACGTAGT+TGG - Chr8:29950933-29950952 MsG0880043748.01.T01:CDS 50.0%
CATTGCCTGGGCCAAACATT+GGG - Chr8:29950338-29950357 MsG0880043748.01.T01:intron 50.0%
GAGACTGTTATGCTCGGAGA+AGG + Chr8:29949113-29949132 None:intergenic 50.0%
GCAACTCATTGATCCTCGAC+TGG + Chr8:29949321-29949340 None:intergenic 50.0%
GCAGAAGTAAGGCAGTCGAT+TGG - Chr8:29949339-29949358 MsG0880043748.01.T01:intron 50.0%
GTAAGGCAGTCGATTGGTAG+AGG - Chr8:29949345-29949364 MsG0880043748.01.T01:intron 50.0%
TAAGTAAGGCGGTGAAGTGG+TGG + Chr8:29949019-29949038 None:intergenic 50.0%
TACGGGATTAGGCTTGTGGA+TGG - Chr8:29948291-29948310 MsG0880043748.01.T01:intron 50.0%
! AGAGATGCCCTGCTCTTTTG+AGG + Chr8:29950988-29951007 None:intergenic 50.0%
! AGAGTTGGCCTCAAAAGAGC+AGG - Chr8:29950977-29950996 MsG0880043748.01.T01:CDS 50.0%
! CTACGTACTGACCGACGATA+TGG + Chr8:29950932-29950951 None:intergenic 50.0%
! GAGTTGGCCTCAAAAGAGCA+GGG - Chr8:29950978-29950997 MsG0880043748.01.T01:CDS 50.0%
! TGGACTAGAGCAGCAAGAGT+TGG - Chr8:29950962-29950981 MsG0880043748.01.T01:CDS 50.0%
! TGTCTGGTGTTTGTTGCCCA+CGG - Chr8:29950566-29950585 MsG0880043748.01.T01:intron 50.0%
!! AAGCAGAGGCACCATATCGT+CGG - Chr8:29950918-29950937 MsG0880043748.01.T01:CDS 50.0%
!!! GTCATTTTTGCGGATCTCGG+CGG + Chr8:29947656-29947675 None:intergenic 50.0%
AGGCAGTCGATTGGTAGAGG+GGG - Chr8:29949348-29949367 MsG0880043748.01.T01:intron 55.0%
CTTGCTGCTCTAGTCCACGA+CGG + Chr8:29950959-29950978 None:intergenic 55.0%
GAACACCCAATGTTTGGCCC+AGG + Chr8:29950346-29950365 None:intergenic 55.0%
GCATTGCCTGGGCCAAACAT+TGG - Chr8:29950337-29950356 MsG0880043748.01.T01:intron 55.0%
GTAGAACGTTCTGCCACCAC+AGG - Chr8:29949085-29949104 MsG0880043748.01.T01:intron 55.0%
GTCGAAGGAATGTGCAGTGG+TGG - Chr8:29949263-29949282 MsG0880043748.01.T01:intron 55.0%
! GTCTGGTGTTTGTTGCCCAC+GGG - Chr8:29950567-29950586 MsG0880043748.01.T01:intron 55.0%
!! AGGAAGGAGGGAAGGTACCT+TGG + Chr8:29947692-29947711 None:intergenic 55.0%
!! GAGGGAAGGTACCTTGGGAT+TGG + Chr8:29947686-29947705 None:intergenic 55.0%
!! GGAAGGAGGGAAGGTACCTT+GGG + Chr8:29947691-29947710 None:intergenic 55.0%
AGTCGATTGGTAGAGGGGGG+AGG - Chr8:29949352-29949371 MsG0880043748.01.T01:intron 60.0%
ATGCTCGGAGAAGGAGCCTG+TGG + Chr8:29949104-29949123 None:intergenic 60.0%
ATTGGTAGAGGGGGGAGGGA+AGG - Chr8:29949357-29949376 MsG0880043748.01.T01:intron 60.0%
CAGTACGTAGTTGGCCGTCG+TGG - Chr8:29950942-29950961 MsG0880043748.01.T01:CDS 60.0%
GGCAGTCGATTGGTAGAGGG+GGG - Chr8:29949349-29949368 MsG0880043748.01.T01:intron 60.0%
GGTGGCAGAACGTTCTACCG+TGG + Chr8:29949083-29949102 None:intergenic 60.0%
GTAAGGCGGTGAAGTGGTGG+AGG + Chr8:29949016-29949035 None:intergenic 60.0%
GTCGATTGGTAGAGGGGGGA+GGG - Chr8:29949353-29949372 MsG0880043748.01.T01:intron 60.0%
CTCGGAGAAGGAGCCTGTGG+TGG + Chr8:29949101-29949120 None:intergenic 65.0%
! AGGCGGTGAAGTGGTGGAGG+AGG + Chr8:29949013-29949032 None:intergenic 65.0%
! GGCGGTGAAGTGGTGGAGGA+GGG + Chr8:29949012-29949031 None:intergenic 65.0%
! GGTGAAGTGGTGGAGGAGGG+AGG + Chr8:29949009-29949028 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 29947493 29951046 29947493 ID=MsG0880043748.01;Name=MsG0880043748.01
Chr8 mRNA 29947493 29951046 29947493 ID=MsG0880043748.01.T01;Parent=MsG0880043748.01;Name=MsG0880043748.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|129
Chr8 exon 29947493 29947681 29947493 ID=MsG0880043748.01.T01:exon:9107;Parent=MsG0880043748.01.T01
Chr8 exon 29950846 29951046 29950846 ID=MsG0880043748.01.T01:exon:9106;Parent=MsG0880043748.01.T01
Chr8 CDS 29950846 29951046 29950846 ID=MsG0880043748.01.T01:cds;Parent=MsG0880043748.01.T01
Chr8 CDS 29947493 29947681 29947493 ID=MsG0880043748.01.T01:cds;Parent=MsG0880043748.01.T01
Gene Sequence

>MsG0880043748.01.T01

ATTCGAAACGCGAAAGTACCACCAAACTCAGTGAATCTCTCTGAAGCGCGTCAACGAGTTTTCGAATTCTTCAGAAGCGCTTGTAGATCTTTACCTACCGTCATGGAAGTTTACAATCTTTACGATGTCGCTACCGTTTCTCAGCTTCGTTCTACAATCGCCGCCGAGATCCGCAAAAATGACCATATCACCAATCCCAAGGTCATTGATATGCTGCTTTTCAAGGGGTTAGAAGAGCTGAAGAATGTTGTGAACCATTCAAAGCAGAGGCACCATATCGTCGGTCAGTACGTAGTTGGCCGTCGTGGACTAGAGCAGCAAGAGTTGGCCTCAAAAGAGCAGGGCATCTCTAATTTTCTGAAGAATTTCTACAACAGCAATTACTCTTGA
Protein sequence

>MsG0880043748.01.T01

IRNAKVPPNSVNLSEARQRVFEFFRSACRSLPTVMEVYNLYDVATVSQLRSTIAAEIRKNDHITNPKVIDMLLFKGLEELKNVVNHSKQRHHIVGQYVVGRRGLEQQELASKEQGISNFLKNFYNSNYS*