AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027999.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027999.01.T01 MTR_5g055150 99.115 226 2 0 1 226 1 226 3.84e-164 452
MsG0580027999.01.T01 MTR_5g055150 98.485 132 2 0 1 132 1 132 5.28e-88 258
MsG0580027999.01.T01 MTR_5g055130 56.075 107 12 3 3 107 17 90 7.10e-21 90.5
MsG0580027999.01.T01 MTR_5g055130 56.075 107 12 3 3 107 17 90 7.14e-21 90.5
MsG0580027999.01.T01 MTR_4g007850 51.429 105 14 3 3 107 17 84 3.24e-17 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027999.01.T01 AT1G13330 75.664 226 55 0 1 226 1 226 1.91e-125 354

Find 76 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGATCCCAAAGAATTTA+AGG 0.146216 5:+72752680 MsG0580027999.01.T01:CDS
CCTTCAGCGTTATCGGATTT+TGG 0.169276 5:-72749854 None:intergenic
AGGCGGAAAGATTTCGTTTA+AGG 0.170664 5:+72750213 MsG0580027999.01.T01:CDS
AAAAGAAACCTTAAATTCTT+TGG 0.192821 5:-72752688 None:intergenic
AAAGAATGTTCAGGGATTTA+TGG 0.204783 5:+72752634 MsG0580027999.01.T01:CDS
AAGATTTCGTTTAAGGAGTA+TGG 0.259007 5:+72750220 MsG0580027999.01.T01:CDS
TGTGATTTGGGTAGCAAAAT+AGG 0.266860 5:+72750101 MsG0580027999.01.T01:intron
TGATTAAGCTCTTCGTTATT+CGG 0.289927 5:-72750286 None:intergenic
GAGGAACAGAAGAAGGTTAT+TGG 0.293325 5:+72750346 MsG0580027999.01.T01:CDS
TCAACTGCCACGCGTTCTTC+TGG 0.310781 5:-72752570 None:intergenic
GCTTCTTACCCTGTGGTATC+AGG 0.318511 5:-72752847 None:intergenic
AAAGAAACCTTAAATTCTTT+GGG 0.320146 5:-72752687 None:intergenic
ACACAGGTATATAGATTATA+TGG 0.323686 5:+72752929 MsG0580027999.01.T01:three_prime_UTR
AAGAGTACCTTCAGCGTTAT+CGG 0.324816 5:-72749861 None:intergenic
AAGAATGTTCAGGGATTTAT+GGG 0.335669 5:+72752635 MsG0580027999.01.T01:CDS
AGTTGAGAATGGAAGAAAAT+TGG 0.354435 5:-72749825 None:intergenic
TTAAATTCTTTGGGATCCTT+AGG 0.363696 5:-72752678 None:intergenic
TCTGCTTCAGGTTCAAGAAC+TGG 0.380712 5:+72752503 MsG0580027999.01.T01:intron
GCATTGGATAGTCTTGAAAA+AGG 0.384710 5:+72750193 MsG0580027999.01.T01:CDS
CTGTTCCTTTGTTTCTCAGA+AGG 0.388643 5:-72749776 None:intergenic
GGAAGCGTAAAAGAATGTTC+AGG 0.398097 5:+72752625 MsG0580027999.01.T01:CDS
TATTATTGTTTATATCTCTC+TGG 0.409647 5:+72753089 MsG0580027999.01.T01:three_prime_UTR
CATTATTTACCTGCATTCTC+AGG 0.432067 5:-72752391 None:intergenic
GAACATTGCAGGAGGAGCTT+GGG 0.444399 5:+72752777 MsG0580027999.01.T01:intron
CGGTCGAAATGCCATTTGAT+TGG 0.447375 5:+72753139 MsG0580027999.01.T01:three_prime_UTR
ATATACCTGTGTCATAGATT+AGG 0.450639 5:-72752918 None:intergenic
TGAACATTGCAGGAGGAGCT+TGG 0.451875 5:+72752776 MsG0580027999.01.T01:intron
TAAATATATCATTGTCCCCT+TGG 0.461490 5:-72752872 None:intergenic
GTTATTGGTGAGGTTGAAGC+AGG 0.462602 5:+72750361 MsG0580027999.01.T01:CDS
TTTGGAGCCATAGTTGAGAA+TGG 0.473128 5:-72749836 None:intergenic
CGGGTCAAACGCCAATCAAA+TGG 0.476571 5:-72753150 None:intergenic
CACAGGGTAAGAAGCGGCCA+AGG 0.494504 5:+72752855 MsG0580027999.01.T01:CDS
GCAACTTGAGGAACAGAAGA+AGG 0.515976 5:+72750339 MsG0580027999.01.T01:CDS
CGAAGAGCTTAATCAGATGA+AGG 0.516162 5:+72750294 MsG0580027999.01.T01:CDS
GGCAGTTGAGAGTATGTTGT+CGG 0.518602 5:+72752584 MsG0580027999.01.T01:CDS
TGTAAAGACTTACATTACAT+TGG 0.522428 5:-72752991 None:intergenic
TCCTTCCTAATCTATGACAC+AGG 0.528339 5:+72752913 MsG0580027999.01.T01:three_prime_UTR
GTTACGTGGAGGTGTTACTT+TGG 0.529557 5:+72752542 MsG0580027999.01.T01:CDS
AACTCACCAGGGCATGGTCT+CGG 0.530338 5:+72753061 MsG0580027999.01.T01:three_prime_UTR
ATTCACCTTCTGAGAAACAA+AGG 0.559522 5:+72749771 None:intergenic
AGAAGTTGACCTGAGAATGC+AGG 0.568107 5:+72752382 MsG0580027999.01.T01:CDS
ACAGAAGAAGGTTATTGGTG+AGG 0.575228 5:+72750351 MsG0580027999.01.T01:CDS
AGCGGCGATACAGAAAGCAT+TGG 0.576611 5:+72750177 MsG0580027999.01.T01:CDS
GTGGAGGTGTTACTTTGGTG+AGG 0.581557 5:+72752547 MsG0580027999.01.T01:CDS
CTAGAATATGATGAAGATGT+TGG 0.582142 5:+72752800 MsG0580027999.01.T01:CDS
GAAGCGTAAAAGAATGTTCA+GGG 0.583026 5:+72752626 MsG0580027999.01.T01:CDS
TGAGAATGGAAGAAAATTGG+CGG 0.583321 5:-72749822 None:intergenic
ATGCAGTGACCTGATACCAC+AGG 0.591833 5:+72752838 MsG0580027999.01.T01:CDS
GTTGCAATCAAATTTAACAA+TGG 0.597161 5:+72752343 MsG0580027999.01.T01:CDS
CCTCACTGAGAACTCACCTA+AGG 0.600047 5:+72752662 MsG0580027999.01.T01:CDS
CCAAAATCCGATAACGCTGA+AGG 0.602208 5:+72749854 MsG0580027999.01.T01:CDS
GAGAATGGAAGAAAATTGGC+GGG 0.603178 5:-72749821 None:intergenic
AAGACTAACTCACCAGGGCA+TGG 0.605848 5:+72753055 MsG0580027999.01.T01:three_prime_UTR
AAAGTTTAATCTGAAGAAAG+CGG 0.612912 5:+72750159 MsG0580027999.01.T01:CDS
ACAGGGTAAGAAGCGGCCAA+GGG 0.615308 5:+72752856 MsG0580027999.01.T01:CDS
ACCTGTGTCATAGATTAGGA+AGG 0.624076 5:-72752914 None:intergenic
ATGATATATTTATCGAAACT+CGG 0.624773 5:+72752883 MsG0580027999.01.T01:exon
GCCGCTGAATACGCAAAATG+TGG 0.625677 5:+72750123 MsG0580027999.01.T01:CDS
CTTAGGTGAGTTCTCAGTGA+GGG 0.632171 5:-72752661 None:intergenic
CTTGGCCGCTTCTTACCCTG+TGG 0.641684 5:-72752854 None:intergenic
CAGGGTAAGAAGCGGCCAAG+GGG 0.643585 5:+72752857 MsG0580027999.01.T01:CDS
TAATTTGCAGAAGCAACTTG+AGG 0.648057 5:+72750327 MsG0580027999.01.T01:CDS
CGTGTTGAACTTCGTCAACG+AGG 0.649248 5:+72749967 MsG0580027999.01.T01:CDS
TGAGTTAGTCTTGTAAAAGA+CGG 0.653805 5:-72753044 None:intergenic
CGGAGAAAATAAGTCAGTGG+AGG 0.655882 5:+72752604 MsG0580027999.01.T01:CDS
ATTGCACCGAGACCATGCCC+TGG 0.665357 5:-72753067 None:intergenic
TGATACCACAGGGTAAGAAG+CGG 0.675121 5:+72752849 MsG0580027999.01.T01:CDS
GCTGAATACGCAAAATGTGG+CGG 0.678440 5:+72750126 MsG0580027999.01.T01:CDS
GGTGAGGCCAGAAGAACGCG+TGG 0.679059 5:+72752563 MsG0580027999.01.T01:CDS
GTTAGTCTTGTAAAAGACGG+TGG 0.681280 5:-72753041 None:intergenic
TGTCGGAGAAAATAAGTCAG+TGG 0.683795 5:+72752601 MsG0580027999.01.T01:CDS
TTTACAAGACTAACTCACCA+GGG 0.693666 5:+72753050 MsG0580027999.01.T01:three_prime_UTR
ATCAAGTTGAACAAGTTACG+TGG 0.698323 5:+72752528 MsG0580027999.01.T01:CDS
TGCAGTGACCTGATACCACA+GGG 0.698743 5:+72752839 MsG0580027999.01.T01:CDS
AAGTTGAACAAGTTACGTGG+AGG 0.731034 5:+72752531 MsG0580027999.01.T01:CDS
CCTTAGGTGAGTTCTCAGTG+AGG 0.748594 5:-72752662 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATGTATATTTTTACAA+TGG - Chr5:72751969-72751988 None:intergenic 10.0%
!! AATTATATTAGTAGTAATAG+TGG - Chr5:72752757-72752776 None:intergenic 15.0%
!! ATTATATTAGTAGTAATAGT+GGG - Chr5:72752756-72752775 None:intergenic 15.0%
!! TTAAATCACTAAAATTGAAA+TGG - Chr5:72751304-72751323 None:intergenic 15.0%
!!! AATTTTAGTGATTTAAAAAG+AGG + Chr5:72751308-72751327 MsG0580027999.01.T01:intron 15.0%
!!! ATATTAATTACAGTGTTTTA+AGG - Chr5:72750888-72750907 None:intergenic 15.0%
!! AAAAGAAACCTTAAATTCTT+TGG - Chr5:72752691-72752710 None:intergenic 20.0%
!! AAAGAAACCTTAAATTCTTT+GGG - Chr5:72752690-72752709 None:intergenic 20.0%
!! AATCAGATAAAACAATGAAA+TGG - Chr5:72752188-72752207 None:intergenic 20.0%
!! AATGTTGTTCAATTAAGATA+TGG + Chr5:72752464-72752483 MsG0580027999.01.T01:intron 20.0%
!! AATTGATGAATGTAACTTAT+TGG + Chr5:72752305-72752324 MsG0580027999.01.T01:intron 20.0%
!! ATGATATATTTATCGAAACT+CGG + Chr5:72752883-72752902 MsG0580027999.01.T01:exon 20.0%
!! TATTATTGTTTATATCTCTC+TGG + Chr5:72753089-72753108 MsG0580027999.01.T01:three_prime_UTR 20.0%
!! TTTCAATTAATGAAAAGAGA+CGG + Chr5:72751902-72751921 MsG0580027999.01.T01:intron 20.0%
!!! ATTGTTTTGTTTTTGTGATT+TGG + Chr5:72750088-72750107 MsG0580027999.01.T01:intron 20.0%
!!! TCAATTAGTTTCTATTGATT+TGG + Chr5:72750020-72750039 MsG0580027999.01.T01:intron 20.0%
!!! TGTTTTAAAATGAAATGAAC+AGG + Chr5:72751374-72751393 MsG0580027999.01.T01:intron 20.0%
!!! TTATTTGAGTGTTTTGATTT+GGG + Chr5:72750454-72750473 MsG0580027999.01.T01:intron 20.0%
!!! TTGTTTTGTTTTTGTGATTT+GGG + Chr5:72750089-72750108 MsG0580027999.01.T01:intron 20.0%
!!! TTTAAAAGATGTTTAAGTTG+TGG + Chr5:72751575-72751594 MsG0580027999.01.T01:intron 20.0%
! AAACAAAGGAACAGAAAAAA+AGG + Chr5:72749785-72749804 MsG0580027999.01.T01:five_prime_UTR 25.0%
! AAAGTTTAATCTGAAGAAAG+CGG + Chr5:72750159-72750178 MsG0580027999.01.T01:CDS 25.0%
! AACAAAGGAACAGAAAAAAA+GGG + Chr5:72749786-72749805 MsG0580027999.01.T01:five_prime_UTR 25.0%
! ACACAGGTATATAGATTATA+TGG + Chr5:72752929-72752948 MsG0580027999.01.T01:three_prime_UTR 25.0%
! AGTTAAAGAGAGAAAATGTT+AGG - Chr5:72749934-72749953 None:intergenic 25.0%
! ATTTCGAATAACAATCTAGT+TGG + Chr5:72752229-72752248 MsG0580027999.01.T01:intron 25.0%
! CTAATATAATTGAACATTGC+AGG + Chr5:72752766-72752785 MsG0580027999.01.T01:intron 25.0%
! GTTGCAATCAAATTTAACAA+TGG + Chr5:72752343-72752362 MsG0580027999.01.T01:CDS 25.0%
! TATGAAATGAAACGAAGAAA+TGG - Chr5:72749909-72749928 None:intergenic 25.0%
! TGGTATTTATACTGTGTTTA+TGG + Chr5:72750040-72750059 MsG0580027999.01.T01:intron 25.0%
! TGTAAAGACTTACATTACAT+TGG - Chr5:72752994-72753013 None:intergenic 25.0%
! TTTCTTTGCTGAAAATGTAT+TGG + Chr5:72752077-72752096 MsG0580027999.01.T01:intron 25.0%
! TTTGGAAATGTAGTTGAATT+GGG + Chr5:72750399-72750418 MsG0580027999.01.T01:intron 25.0%
!! AGGTATGATTTAAAATGGTT+TGG + Chr5:72750381-72750400 MsG0580027999.01.T01:intron 25.0%
!! TACAATTTAGACTCAGTTTT+CGG + Chr5:72753010-72753029 MsG0580027999.01.T01:three_prime_UTR 25.0%
!!! ATTTAAGGTTTCTTTTTGTC+CGG + Chr5:72752695-72752714 MsG0580027999.01.T01:intron 25.0%
!!! GTGTTTTAAAACCTAAATGA+TGG + Chr5:72751224-72751243 MsG0580027999.01.T01:intron 25.0%
!!! GTTATTTGAGTGTTTTGATT+TGG + Chr5:72750453-72750472 MsG0580027999.01.T01:intron 25.0%
!!! GTTTTAAAACGTAAATGATC+AGG + Chr5:72750672-72750691 MsG0580027999.01.T01:intron 25.0%
!!! GTTTTTTTTCTCAATTTGAG+CGG + Chr5:72750763-72750782 MsG0580027999.01.T01:intron 25.0%
!!! TATTTTAATCCGCTCAAATT+GGG - Chr5:72751753-72751772 None:intergenic 25.0%
!!! TCCTGTTCATTTAGTTTTTA+AGG - Chr5:72750534-72750553 None:intergenic 25.0%
!!! TCTTTTAAAACCGCTTAAAT+CGG - Chr5:72751608-72751627 None:intergenic 25.0%
!!! TTATTTTAATCCGCTCAAAT+TGG - Chr5:72751754-72751773 None:intergenic 25.0%
!!! TTTAAAAGAGGTTTAAGTTG+TGG + Chr5:72750787-72750806 MsG0580027999.01.T01:intron 25.0%
AAAGAATGTTCAGGGATTTA+TGG + Chr5:72752634-72752653 MsG0580027999.01.T01:CDS 30.0%
AAAGTAATTCAATCATGACC+TGG + Chr5:72750631-72750650 MsG0580027999.01.T01:intron 30.0%
AAGAATGTTCAGGGATTTAT+GGG + Chr5:72752635-72752654 MsG0580027999.01.T01:CDS 30.0%
AAGATTTCGTTTAAGGAGTA+TGG + Chr5:72750220-72750239 MsG0580027999.01.T01:CDS 30.0%
AGTTGAGAATGGAAGAAAAT+TGG - Chr5:72749828-72749847 None:intergenic 30.0%
ATATAATTGAACATTGCAGG+AGG + Chr5:72752769-72752788 MsG0580027999.01.T01:intron 30.0%
ATATACCTGTGTCATAGATT+AGG - Chr5:72752921-72752940 None:intergenic 30.0%
ATTAATGAAAAGAGACGGAA+CGG + Chr5:72751907-72751926 MsG0580027999.01.T01:intron 30.0%
ATTCCAGTTAATGTTGAAAC+TGG + Chr5:72752254-72752273 MsG0580027999.01.T01:intron 30.0%
CATCTATAAAATTCTGCTTC+AGG + Chr5:72752491-72752510 MsG0580027999.01.T01:intron 30.0%
CTAGAATATGATGAAGATGT+TGG + Chr5:72752800-72752819 MsG0580027999.01.T01:CDS 30.0%
CTATAGTTTGGTTATTTGAG+TGG + Chr5:72751432-72751451 MsG0580027999.01.T01:intron 30.0%
GAAGCAGGTATGATTTAAAA+TGG + Chr5:72750376-72750395 MsG0580027999.01.T01:intron 30.0%
GATGATTCAATTGATTGAAC+TGG + Chr5:72750694-72750713 MsG0580027999.01.T01:intron 30.0%
GCCTTAAAAACTAAATGAAC+AGG + Chr5:72750530-72750549 MsG0580027999.01.T01:intron 30.0%
GTTTGGAAATGTAGTTGAAT+TGG + Chr5:72750398-72750417 MsG0580027999.01.T01:intron 30.0%
TAAATATATCATTGTCCCCT+TGG - Chr5:72752875-72752894 None:intergenic 30.0%
TAAGGATCCCAAAGAATTTA+AGG + Chr5:72752680-72752699 MsG0580027999.01.T01:CDS 30.0%
TCAAATCCTCTCAAATTTGA+CGG - Chr5:72752128-72752147 None:intergenic 30.0%
TCAGCAAAGAAAAATATCAG+TGG - Chr5:72752069-72752088 None:intergenic 30.0%
TCCCTTTCAACAATGTAAAA+AGG - Chr5:72752431-72752450 None:intergenic 30.0%
TGATTAAGCTCTTCGTTATT+CGG - Chr5:72750289-72750308 None:intergenic 30.0%
TTAATTGATTGAACTCGATG+CGG + Chr5:72750426-72750445 MsG0580027999.01.T01:intron 30.0%
TTATTTGAGTAGCTTAACTG+TGG + Chr5:72751139-72751158 MsG0580027999.01.T01:intron 30.0%
TTATTTGAGTGGTTTAGTTG+TGG + Chr5:72750741-72750760 MsG0580027999.01.T01:intron 30.0%
TTCAATCAATTGAATCATCC+AGG - Chr5:72750693-72750712 None:intergenic 30.0%
TTGAAAGGGAATTAGTGATT+TGG + Chr5:72752441-72752460 MsG0580027999.01.T01:intron 30.0%
TTGCTGAAAATGTATTGGAA+CGG + Chr5:72752082-72752101 MsG0580027999.01.T01:intron 30.0%
! AAAAGAACTATGATAGTGAC+CGG - Chr5:72752717-72752736 None:intergenic 30.0%
! ACAATTTAGACTCAGTTTTC+GGG + Chr5:72753011-72753030 MsG0580027999.01.T01:three_prime_UTR 30.0%
! CTTTAAAAACCGCTCAAATT+GGG - Chr5:72750819-72750838 None:intergenic 30.0%
! GCCTTTTTACATTGTTGAAA+GGG + Chr5:72752427-72752446 MsG0580027999.01.T01:intron 30.0%
! TACGGAGTATTTCTCAAATT+AGG + Chr5:72751940-72751959 MsG0580027999.01.T01:intron 30.0%
! TCTTTAAAAACCGCTCAAAT+TGG - Chr5:72750820-72750839 None:intergenic 30.0%
! TGCCTTTTTACATTGTTGAA+AGG + Chr5:72752426-72752445 MsG0580027999.01.T01:intron 30.0%
! TTTTCTTCCATTCTCAACTA+TGG + Chr5:72749829-72749848 MsG0580027999.01.T01:exon 30.0%
!! AATTTGAGCGGTTTTTAAAG+AGG + Chr5:72750819-72750838 MsG0580027999.01.T01:intron 30.0%
!! TGAGTTAGTCTTGTAAAAGA+CGG - Chr5:72753047-72753066 None:intergenic 30.0%
!! TTAAATTCTTTGGGATCCTT+AGG - Chr5:72752681-72752700 None:intergenic 30.0%
!!! AATTTGAGCGGTTTTAAAAG+AGG + Chr5:72750775-72750794 MsG0580027999.01.T01:intron 30.0%
!!! CAGTGTTTTAAAGACTAAAC+AGG - Chr5:72751812-72751831 None:intergenic 30.0%
!!! CTTTTAAAACCGCTTAAATC+GGG - Chr5:72751607-72751626 None:intergenic 30.0%
!!! GATTTAAGCGGTTTTAAAAG+AGG + Chr5:72751607-72751626 MsG0580027999.01.T01:intron 30.0%
!!! TCTTTTAAAACCGCTCAAAT+CGG - Chr5:72750776-72750795 None:intergenic 30.0%
!!! TGTTTTAATCCGCTCAAATT+GGG - Chr5:72750965-72750984 None:intergenic 30.0%
!!! TTATTTTAGCGTTTTGATCG+CGG + Chr5:72750585-72750604 MsG0580027999.01.T01:intron 30.0%
!!! TTGTTTTAATCCGCTCAAAT+TGG - Chr5:72750966-72750985 None:intergenic 30.0%
!!! TTTTGATTTGGGTTTGTTTC+TGG + Chr5:72750465-72750484 MsG0580027999.01.T01:intron 30.0%
AAAAAACCGACAAAACCTCT+TGG - Chr5:72751000-72751019 None:intergenic 35.0%
AAAGCAGTTGAATCATGACA+TGG + Chr5:72751334-72751353 MsG0580027999.01.T01:intron 35.0%
AACCAAGCTATAGATAGTAC+TGG - Chr5:72750723-72750742 None:intergenic 35.0%
AACCAGTACTATCTATAGCT+TGG + Chr5:72750718-72750737 MsG0580027999.01.T01:intron 35.0%
AACGGGTACTATCTATAGTT+TGG + Chr5:72751420-72751439 MsG0580027999.01.T01:intron 35.0%
AACTGGTACTATCTACAGTT+CGG + Chr5:72751116-72751135 MsG0580027999.01.T01:intron 35.0%
AAGACTAAACAGGCATCAAA+CGG - Chr5:72751802-72751821 None:intergenic 35.0%
AAGCAGTTGAATCATGACAT+GGG + Chr5:72751335-72751354 MsG0580027999.01.T01:intron 35.0%
AAGTAACCGTCAAATTTGAG+AGG + Chr5:72752119-72752138 MsG0580027999.01.T01:intron 35.0%
AGTTAATGTTGAAACTGGTG+AGG + Chr5:72752259-72752278 MsG0580027999.01.T01:intron 35.0%
CAATTGATTGAACTCTGAAC+TGG + Chr5:72751872-72751891 MsG0580027999.01.T01:intron 35.0%
CATTATTTACCTGCATTCTC+AGG - Chr5:72752394-72752413 None:intergenic 35.0%
CTATAGCTTGGTTATTTGAG+TGG + Chr5:72750730-72750749 MsG0580027999.01.T01:intron 35.0%
CTCTGGTGAAAATCTCAATA+TGG - Chr5:72751848-72751867 None:intergenic 35.0%
GAAGCGTAAAAGAATGTTCA+GGG + Chr5:72752626-72752645 MsG0580027999.01.T01:CDS 35.0%
GAGAATGCAGGTAAATAATG+TGG + Chr5:72752394-72752413 MsG0580027999.01.T01:intron 35.0%
GTTCAATCAATTGAACACTC+TGG - Chr5:72751865-72751884 None:intergenic 35.0%
TAATTGTGACCTAGACATTC+TGG + Chr5:72750844-72750863 MsG0580027999.01.T01:intron 35.0%
TCAAGTGATTGAACTGTGAA+CGG + Chr5:72751402-72751421 MsG0580027999.01.T01:intron 35.0%
TCACCAGTTTCAACATTAAC+TGG - Chr5:72752260-72752279 None:intergenic 35.0%
TGAGAATGGAAGAAAATTGG+CGG - Chr5:72749825-72749844 None:intergenic 35.0%
TGATTTCATCCCAATTTGAG+CGG + Chr5:72750953-72750972 MsG0580027999.01.T01:intron 35.0%
TTTACAAGACTAACTCACCA+GGG + Chr5:72753050-72753069 MsG0580027999.01.T01:three_prime_UTR 35.0%
! GCATTGGATAGTCTTGAAAA+AGG + Chr5:72750193-72750212 MsG0580027999.01.T01:CDS 35.0%
! TAAATGATGGAACTGTGAAC+CGG + Chr5:72751237-72751256 MsG0580027999.01.T01:intron 35.0%
! TAATTTGCAGAAGCAACTTG+AGG + Chr5:72750327-72750346 MsG0580027999.01.T01:CDS 35.0%
! TGCTTTAAACCGCTCAAATT+GGG - Chr5:72751171-72751190 None:intergenic 35.0%
! TGTGATTTGGGTAGCAAAAT+AGG + Chr5:72750101-72750120 MsG0580027999.01.T01:intron 35.0%
! TTGGATAGTCTTGAAAAAGG+CGG + Chr5:72750196-72750215 MsG0580027999.01.T01:CDS 35.0%
! TTTTACAAGACTAACTCACC+AGG + Chr5:72753049-72753068 MsG0580027999.01.T01:three_prime_UTR 35.0%
!! AGTTATTTGAGCGTTTTGAC+CGG + Chr5:72751029-72751048 MsG0580027999.01.T01:intron 35.0%
!! ATCAAGTTGAACAAGTTACG+TGG + Chr5:72752528-72752547 MsG0580027999.01.T01:CDS 35.0%
!!! CTTTTAAAACCGCTCAAATC+AGG - Chr5:72751475-72751494 None:intergenic 35.0%
!!! CTTTTAAAACCGCTCAAATC+GGG - Chr5:72751475-72751494 None:intergenic 35.0%
!!! GATTTGAGCGGTTTTAAAAG+AGG + Chr5:72751475-72751494 MsG0580027999.01.T01:intron 35.0%
!!! TAGGTTTTAAAACACCGAAC+TGG - Chr5:72751219-72751238 None:intergenic 35.0%
AAAGCAGTTGAATCATGACC+TGG + Chr5:72751077-72751096 MsG0580027999.01.T01:intron 40.0%
AAATGGAGAGAGATGAGTGA+TGG - Chr5:72749892-72749911 None:intergenic 40.0%
AACCAAAGTGAAGATAGCAC+CGG - Chr5:72751259-72751278 None:intergenic 40.0%
AACGCTCAAATAACTGAACC+AGG - Chr5:72751024-72751043 None:intergenic 40.0%
AAGTTGAACAAGTTACGTGG+AGG + Chr5:72752531-72752550 MsG0580027999.01.T01:CDS 40.0%
ACAATTGAACCATCTCCAAG+AGG + Chr5:72750982-72751001 MsG0580027999.01.T01:intron 40.0%
ACAGAAGAAGGTTATTGGTG+AGG + Chr5:72750351-72750370 MsG0580027999.01.T01:CDS 40.0%
ACCTGTGTCATAGATTAGGA+AGG - Chr5:72752917-72752936 None:intergenic 40.0%
AGGCGGAAAGATTTCGTTTA+AGG + Chr5:72750213-72750232 MsG0580027999.01.T01:CDS 40.0%
ATCAAACGGACAAAACCACT+GGG - Chr5:72751788-72751807 None:intergenic 40.0%
ATCGAACTAGCAAATCATCC+AGG - Chr5:72750652-72750671 None:intergenic 40.0%
CAAGTGATTGAACTGTGAAC+GGG + Chr5:72751403-72751422 MsG0580027999.01.T01:intron 40.0%
CGAAGAGCTTAATCAGATGA+AGG + Chr5:72750294-72750313 MsG0580027999.01.T01:CDS 40.0%
CGATTTCATCCCAATTTGAG+CGG + Chr5:72751741-72751760 MsG0580027999.01.T01:intron 40.0%
CGGAACGGAATACAATGATA+CGG + Chr5:72751922-72751941 MsG0580027999.01.T01:intron 40.0%
GAGAATGGAAGAAAATTGGC+GGG - Chr5:72749824-72749843 None:intergenic 40.0%
GAGGAACAGAAGAAGGTTAT+TGG + Chr5:72750346-72750365 MsG0580027999.01.T01:CDS 40.0%
GGTTCACAGTTCCATCATTT+AGG - Chr5:72751238-72751257 None:intergenic 40.0%
TAACTGTGACCAAGAGGTTT+CGG + Chr5:72751632-72751651 MsG0580027999.01.T01:intron 40.0%
TACACCAAACCAGAATGTCT+AGG - Chr5:72750856-72750875 None:intergenic 40.0%
TCCTTCCTAATCTATGACAC+AGG + Chr5:72752913-72752932 MsG0580027999.01.T01:three_prime_UTR 40.0%
TGGATTTGTCCCAATTTGAG+CGG + Chr5:72750807-72750826 MsG0580027999.01.T01:intron 40.0%
TGTCGGAGAAAATAAGTCAG+TGG + Chr5:72752601-72752620 MsG0580027999.01.T01:CDS 40.0%
TTAAACCGCTCAAATTGGGA+CGG - Chr5:72751167-72751186 None:intergenic 40.0%
! AAAGCAGTTGATTCATGACC+TGG + Chr5:72750500-72750519 MsG0580027999.01.T01:intron 40.0%
! CTGCTTTAAACCGCTCAAAT+TGG - Chr5:72751172-72751191 None:intergenic 40.0%
! GGAAGCGTAAAAGAATGTTC+AGG + Chr5:72752625-72752644 MsG0580027999.01.T01:CDS 40.0%
! TTTGGAGCCATAGTTGAGAA+TGG - Chr5:72749839-72749858 None:intergenic 40.0%
!! AAGAGTACCTTCAGCGTTAT+CGG - Chr5:72749864-72749883 None:intergenic 40.0%
!! AGACATTCTGGTTTGGTGTA+TGG + Chr5:72750856-72750875 MsG0580027999.01.T01:intron 40.0%
!! GTTAGTCTTGTAAAAGACGG+TGG - Chr5:72753044-72753063 None:intergenic 40.0%
!! GTTATTTGAGCGTTTTGACC+GGG + Chr5:72751030-72751049 MsG0580027999.01.T01:intron 40.0%
!! TGGGTTTGTTTCTGGTTTGA+GGG + Chr5:72750473-72750492 MsG0580027999.01.T01:intron 40.0%
!! TTATTTGAGCGTTTTGACCG+GGG + Chr5:72751031-72751050 MsG0580027999.01.T01:intron 40.0%
!! TTGGGTTTGTTTCTGGTTTG+AGG + Chr5:72750472-72750491 MsG0580027999.01.T01:intron 40.0%
!! TTTTGACCGGGGTTTGTTTA+GGG + Chr5:72751042-72751061 MsG0580027999.01.T01:intron 40.0%
!! TTTTGATCGCGGTTTGTTTC+TGG + Chr5:72750596-72750615 MsG0580027999.01.T01:intron 40.0%
!!! GTTTTTAAGGCGAATCATCC+AGG - Chr5:72750521-72750540 None:intergenic 40.0%
!!! TGGTTTTGTCCCGATTTAAG+CGG + Chr5:72751595-72751614 MsG0580027999.01.T01:intron 40.0%
!!! TGGTTTTGTCCTGATTTGAG+CGG + Chr5:72751507-72751526 MsG0580027999.01.T01:intron 40.0%
ACCTGAATGATTCGCCAGTT+CGG + Chr5:72751202-72751221 MsG0580027999.01.T01:intron 45.0%
AGAAGTTGACCTGAGAATGC+AGG + Chr5:72752382-72752401 MsG0580027999.01.T01:CDS 45.0%
ATAATTGAGCCATCACCCAG+TGG + Chr5:72751770-72751789 MsG0580027999.01.T01:intron 45.0%
CATCAAACGGACAAAACCAC+TGG - Chr5:72751789-72751808 None:intergenic 45.0%
CCAAAATCCGATAACGCTGA+AGG + Chr5:72749854-72749873 MsG0580027999.01.T01:CDS 45.0%
CGGAGAAAATAAGTCAGTGG+AGG + Chr5:72752604-72752623 MsG0580027999.01.T01:CDS 45.0%
CTTAGGTGAGTTCTCAGTGA+GGG - Chr5:72752664-72752683 None:intergenic 45.0%
GAGGTTTAACTGTGACCAAG+AGG + Chr5:72751626-72751645 MsG0580027999.01.T01:intron 45.0%
GCAACTTGAGGAACAGAAGA+AGG + Chr5:72750339-72750358 MsG0580027999.01.T01:CDS 45.0%
GCTGAATACGCAAAATGTGG+CGG + Chr5:72750126-72750145 MsG0580027999.01.T01:CDS 45.0%
GTTATTGGTGAGGTTGAAGC+AGG + Chr5:72750361-72750380 MsG0580027999.01.T01:CDS 45.0%
TACATCGAACCGAAACCTCT+TGG - Chr5:72751644-72751663 None:intergenic 45.0%
TGATACCACAGGGTAAGAAG+CGG + Chr5:72752849-72752868 MsG0580027999.01.T01:CDS 45.0%
TGATTGAACTCGATGCGGTT+TGG + Chr5:72750431-72750450 MsG0580027999.01.T01:intron 45.0%
TGTTGAAACTGGTGAGGACT+TGG + Chr5:72752265-72752284 MsG0580027999.01.T01:intron 45.0%
! AGAGGTTTCGGTTCGATGTA+TGG + Chr5:72751644-72751663 MsG0580027999.01.T01:intron 45.0%
! CCTTCAGCGTTATCGGATTT+TGG - Chr5:72749857-72749876 None:intergenic 45.0%
! CGGTCGAAATGCCATTTGAT+TGG + Chr5:72753139-72753158 MsG0580027999.01.T01:three_prime_UTR 45.0%
! GCCACATTTTGCGTATTCAG+CGG - Chr5:72750127-72750146 None:intergenic 45.0%
! GGCAGTTGAGAGTATGTTGT+CGG + Chr5:72752584-72752603 MsG0580027999.01.T01:CDS 45.0%
! GTGACCTAGACATTCTGGTT+TGG + Chr5:72750849-72750868 MsG0580027999.01.T01:intron 45.0%
! TCTGCTTCAGGTTCAAGAAC+TGG + Chr5:72752503-72752522 MsG0580027999.01.T01:intron 45.0%
!! AACCGGTGCTATCTTCACTT+TGG + Chr5:72751254-72751273 MsG0580027999.01.T01:intron 45.0%
!! CCATCTCCAAGAGGTTTTGT+CGG + Chr5:72750991-72751010 MsG0580027999.01.T01:intron 45.0%
!! CGGTTTGTTTCTGGTTTGAG+GGG + Chr5:72750605-72750624 MsG0580027999.01.T01:intron 45.0%
!! GCGGTTTGTTTCTGGTTTGA+GGG + Chr5:72750604-72750623 MsG0580027999.01.T01:intron 45.0%
!! GGGTTTGTTTCTGGTTTGAG+GGG + Chr5:72750474-72750493 MsG0580027999.01.T01:intron 45.0%
!! GTTACGTGGAGGTGTTACTT+TGG + Chr5:72752542-72752561 MsG0580027999.01.T01:CDS 45.0%
!! GTTTTGACCGGGGTTTGTTT+AGG + Chr5:72751041-72751060 MsG0580027999.01.T01:intron 45.0%
!!! CTGTCGCGTCATTTTTCAGA+CGG + Chr5:72753119-72753138 MsG0580027999.01.T01:three_prime_UTR 45.0%
!!! GGTTTTGTCGGTTTTTTGCC+TGG + Chr5:72751003-72751022 MsG0580027999.01.T01:intron 45.0%
!!! TGGTTTTGTCCCGATTTGAG+CGG + Chr5:72751463-72751482 MsG0580027999.01.T01:intron 45.0%
AAGACTAACTCACCAGGGCA+TGG + Chr5:72753055-72753074 MsG0580027999.01.T01:three_prime_UTR 50.0%
ACCGAACTGGCGAATCATTC+AGG - Chr5:72751206-72751225 None:intergenic 50.0%
ATGCAGTGACCTGATACCAC+AGG + Chr5:72752838-72752857 MsG0580027999.01.T01:CDS 50.0%
CCGACAAAACCTCTTGGAGA+TGG - Chr5:72750994-72751013 None:intergenic 50.0%
CCTCACTGAGAACTCACCTA+AGG + Chr5:72752662-72752681 MsG0580027999.01.T01:CDS 50.0%
CCTTAGGTGAGTTCTCAGTG+AGG - Chr5:72752665-72752684 None:intergenic 50.0%
CGTGTTGAACTTCGTCAACG+AGG + Chr5:72749967-72749986 MsG0580027999.01.T01:CDS 50.0%
CTCGAACCCTAAACAAACCC+CGG - Chr5:72751051-72751070 None:intergenic 50.0%
GAACATTGCAGGAGGAGCTT+GGG + Chr5:72752777-72752796 MsG0580027999.01.T01:intron 50.0%
GCCGCTGAATACGCAAAATG+TGG + Chr5:72750123-72750142 MsG0580027999.01.T01:CDS 50.0%
GCTTCTTACCCTGTGGTATC+AGG - Chr5:72752850-72752869 None:intergenic 50.0%
TGAACATTGCAGGAGGAGCT+TGG + Chr5:72752776-72752795 MsG0580027999.01.T01:intron 50.0%
TGCAGTGACCTGATACCACA+GGG + Chr5:72752839-72752858 MsG0580027999.01.T01:CDS 50.0%
TGGTTCCGTCCCAATTTGAG+CGG + Chr5:72751159-72751178 MsG0580027999.01.T01:intron 50.0%
! AGCGGCGATACAGAAAGCAT+TGG + Chr5:72750177-72750196 MsG0580027999.01.T01:CDS 50.0%
! GGGGTTTGTTTAGGGTTCGA+GGG + Chr5:72751050-72751069 MsG0580027999.01.T01:intron 50.0%
! GGGTTTGTTTAGGGTTCGAG+GGG + Chr5:72751051-72751070 MsG0580027999.01.T01:intron 50.0%
!! CGCGGTTTGTTTCTGGTTTG+AGG + Chr5:72750603-72750622 MsG0580027999.01.T01:intron 50.0%
!! GTGGAGGTGTTACTTTGGTG+AGG + Chr5:72752547-72752566 MsG0580027999.01.T01:CDS 50.0%
AACTCACCAGGGCATGGTCT+CGG + Chr5:72753061-72753080 MsG0580027999.01.T01:three_prime_UTR 55.0%
ACAGGGTAAGAAGCGGCCAA+GGG + Chr5:72752856-72752875 MsG0580027999.01.T01:CDS 55.0%
CGGACAAAACCACTGGGTGA+TGG - Chr5:72751782-72751801 None:intergenic 55.0%
TCAACTGCCACGCGTTCTTC+TGG - Chr5:72752573-72752592 None:intergenic 55.0%
! CGGGGTTTGTTTAGGGTTCG+AGG + Chr5:72751049-72751068 MsG0580027999.01.T01:intron 55.0%
ATTGCACCGAGACCATGCCC+TGG - Chr5:72753070-72753089 None:intergenic 60.0%
CACAGGGTAAGAAGCGGCCA+AGG + Chr5:72752855-72752874 MsG0580027999.01.T01:CDS 60.0%
CAGGGTAAGAAGCGGCCAAG+GGG + Chr5:72752857-72752876 MsG0580027999.01.T01:CDS 60.0%
CTTGGCCGCTTCTTACCCTG+TGG - Chr5:72752857-72752876 None:intergenic 60.0%
GGTGAGGCCAGAAGAACGCG+TGG + Chr5:72752563-72752582 MsG0580027999.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 72749779 72753168 72749779 ID=MsG0580027999.01;Name=MsG0580027999.01
Chr5 mRNA 72749779 72753168 72749779 ID=MsG0580027999.01.T01;Parent=MsG0580027999.01;Name=MsG0580027999.01.T01;_AED=0.37;_eAED=0.37;_QI=69|1|1|1|1|1|6|282|226
Chr5 exon 72749779 72749875 72749779 ID=MsG0580027999.01.T01:exon:4625;Parent=MsG0580027999.01.T01
Chr5 exon 72749963 72749988 72749963 ID=MsG0580027999.01.T01:exon:4626;Parent=MsG0580027999.01.T01
Chr5 exon 72750115 72750382 72750115 ID=MsG0580027999.01.T01:exon:4627;Parent=MsG0580027999.01.T01
Chr5 exon 72752333 72752403 72752333 ID=MsG0580027999.01.T01:exon:4628;Parent=MsG0580027999.01.T01
Chr5 exon 72752513 72752701 72752513 ID=MsG0580027999.01.T01:exon:4629;Parent=MsG0580027999.01.T01
Chr5 exon 72752788 72753168 72752788 ID=MsG0580027999.01.T01:exon:4630;Parent=MsG0580027999.01.T01
Chr5 five_prime_UTR 72749779 72749847 72749779 ID=MsG0580027999.01.T01:five_prime_utr;Parent=MsG0580027999.01.T01
Chr5 CDS 72749848 72749875 72749848 ID=MsG0580027999.01.T01:cds;Parent=MsG0580027999.01.T01
Chr5 CDS 72749963 72749988 72749963 ID=MsG0580027999.01.T01:cds;Parent=MsG0580027999.01.T01
Chr5 CDS 72750115 72750382 72750115 ID=MsG0580027999.01.T01:cds;Parent=MsG0580027999.01.T01
Chr5 CDS 72752333 72752403 72752333 ID=MsG0580027999.01.T01:cds;Parent=MsG0580027999.01.T01
Chr5 CDS 72752513 72752701 72752513 ID=MsG0580027999.01.T01:cds;Parent=MsG0580027999.01.T01
Chr5 CDS 72752788 72752886 72752788 ID=MsG0580027999.01.T01:cds;Parent=MsG0580027999.01.T01
Chr5 three_prime_UTR 72752887 72753168 72752887 ID=MsG0580027999.01.T01:three_prime_utr;Parent=MsG0580027999.01.T01
Gene Sequence

>MsG0580027999.01.T01

ATGGCTCCAAAATCCGATAACGCTGAAGCAATCGTGTTGAACTTCGTCAACGAGCAAAATAGGCCGCTGAATACGCAAAATGTGGCGGATGCATTGCAAAAGTTTAATCTGAAGAAAGCGGCGATACAGAAAGCATTGGATAGTCTTGAAAAAGGCGGAAAGATTTCGTTTAAGGAGTATGGTAAGCAGAAGATATACGTTGCTCGACAAGATCAGTTTGAGATTCCGAATAACGAAGAGCTTAATCAGATGAAGGAAAAGAATGCTAATTTGCAGAAGCAACTTGAGGAACAGAAGAAGGTTATTGGTGAGGTTGAAGCAGAAATTAAGTCGTTGCAATCAAATTTAACAATGGAGCAGATCTGTGAAAAAGAAGTTGACCTGAGAATGCAGGTTCAAGAACTGGAGATCAAGTTGAACAAGTTACGTGGAGGTGTTACTTTGGTGAGGCCAGAAGAACGCGTGGCAGTTGAGAGTATGTTGTCGGAGAAAATAAGTCAGTGGAGGAAGCGTAAAAGAATGTTCAGGGATTTATGGGATACCCTCACTGAGAACTCACCTAAGGATCCCAAAGAATTTAAGGAGGAGCTTGGGCTAGAATATGATGAAGATGTTGGTGTGAGTTTGCAGTCATGCAGTGACCTGATACCACAGGGTAAGAAGCGGCCAAGGGGACAATGA

Protein sequence

>MsG0580027999.01.T01

MAPKSDNAEAIVLNFVNEQNRPLNTQNVADALQKFNLKKAAIQKALDSLEKGGKISFKEYGKQKIYVARQDQFEIPNNEELNQMKEKNANLQKQLEEQKKVIGEVEAEIKSLQSNLTMEQICEKEVDLRMQVQELEIKLNKLRGGVTLVRPEERVAVESMLSEKISQWRKRKRMFRDLWDTLTENSPKDPKEFKEELGLEYDEDVGVSLQSCSDLIPQGKKRPRGQ*