AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004128.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004128.01.T01 MTR_1g075710 98.515 202 3 0 10 211 1 202 4.49e-151 417
MsG0180004128.01.T01 MTR_1g041495 81.683 202 37 0 10 211 1 202 1.26e-125 353
MsG0180004128.01.T01 MTR_1g041495 78.199 211 37 1 10 211 1 211 1.71e-122 345
MsG0180004128.01.T01 MTR_1g075700 89.571 163 13 1 10 172 1 159 3.41e-106 303
MsG0180004128.01.T01 MTR_1g028960 33.641 217 134 2 5 211 7 223 3.12e-40 137
MsG0180004128.01.T01 MTR_3g090530 37.433 187 112 3 30 211 36 222 8.05e-39 133
MsG0180004128.01.T01 MTR_1g028970 34.574 188 119 1 28 211 36 223 1.00e-38 133
MsG0180004128.01.T01 MTR_3g090530 37.017 181 109 3 30 205 36 216 1.06e-35 125
MsG0180004128.01.T01 MTR_1g028970 33.333 180 116 1 28 203 36 215 4.14e-35 124
MsG0180004128.01.T01 MTR_1g028970 35.556 135 87 0 28 162 36 170 4.99e-27 102
MsG0180004128.01.T01 MTR_3g090530 37.984 129 79 1 30 157 36 164 5.16e-27 102
MsG0180004128.01.T01 MTR_3g090530 36.424 151 91 3 66 211 7 157 1.60e-26 100
MsG0180004128.01.T01 MTR_3g090530 35.862 145 88 3 66 205 7 151 1.83e-23 92.0
MsG0180004128.01.T01 MTR_3g090530 36.559 93 58 1 66 157 7 99 2.32e-14 67.0
MsG0180004128.01.T01 MTR_2g029520 24.476 143 104 1 27 169 28 166 2.11e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004128.01.T01 AT2G33470 74.257 202 52 0 10 211 1 202 2.57e-116 330
MsG0180004128.01.T01 AT2G33470 74.257 202 52 0 10 211 1 202 2.57e-116 330
MsG0180004128.01.T01 AT1G21360 36.842 190 114 2 26 210 34 222 9.97e-38 130
MsG0180004128.01.T01 AT3G21260 34.444 180 114 1 35 210 53 232 9.83e-36 126
MsG0180004128.01.T01 AT1G21360 36.646 161 96 2 55 210 1 160 3.76e-30 109
MsG0180004128.01.T01 AT1G21360 37.879 132 82 0 26 157 34 165 2.53e-25 98.2
MsG0180004128.01.T01 AT3G21260 33.333 147 94 1 68 210 2 148 4.59e-25 96.3
MsG0180004128.01.T01 AT3G21260 32.857 140 90 1 75 210 4 143 2.51e-23 91.3

Find 60 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTATCATGTCCATTATTT+TGG 0.137452 1:+73738572 None:intergenic
TGAAGAGAATCACAAGTTTC+TGG 0.197925 1:-73739171 MsG0180004128.01.T01:intron
AATTCTGTCACAGCCTTTCT+TGG 0.198191 1:-73741524 MsG0180004128.01.T01:CDS
CTTCTTTAGAGTCTTGTTAT+AGG 0.217183 1:+73739419 None:intergenic
ACTATACAGGCAGTTGAATT+TGG 0.221005 1:+73740252 None:intergenic
CTTCAGAGCAATGGATTTCT+TGG 0.230093 1:-73739505 MsG0180004128.01.T01:intron
GGTTGGATTAGATAAATATT+TGG 0.236982 1:+73740273 None:intergenic
CTGAAACTCTGTTTCTATAT+TGG 0.249104 1:-73738598 MsG0180004128.01.T01:three_prime_UTR
CAATATAGAAACAGAGTTTC+AGG 0.277264 1:+73738599 None:intergenic
TATATTGGCATCCAAAATAA+TGG 0.287005 1:-73738583 MsG0180004128.01.T01:three_prime_UTR
ATTCTTATGGCAGATAAGTT+TGG 0.303743 1:-73740733 MsG0180004128.01.T01:intron
AAACATATACTTCCTGTTAT+AGG 0.315283 1:-73741493 MsG0180004128.01.T01:intron
TCCATGAATTTCTTCCTATC+AGG 0.324564 1:+73739263 None:intergenic
GAAACTTGTGATTCTCTTCA+AGG 0.338646 1:+73739174 None:intergenic
TATTGAACTATATTTGCATT+TGG 0.369916 1:-73738447 MsG0180004128.01.T01:three_prime_UTR
GAAATTCATGGAGGTGATAC+AGG 0.370152 1:-73739252 MsG0180004128.01.T01:CDS
ATTCAACTGCCTGTATAGTT+TGG 0.375332 1:-73740248 MsG0180004128.01.T01:CDS
AAAGCATGTAAAGTCTGAAC+AGG 0.386552 1:-73741551 MsG0180004128.01.T01:CDS
GAGAAGTCCATTGGTACAAC+TGG 0.387611 1:+73740186 None:intergenic
CTCTAAAGAAGTGGCATGGC+TGG 0.390523 1:-73739407 MsG0180004128.01.T01:CDS
ATGTTGAGACAAATGCAATT+TGG 0.405267 1:-73738488 MsG0180004128.01.T01:three_prime_UTR
ATTTGGATTGGATGAATTGA+AGG 0.405788 1:-73738700 MsG0180004128.01.T01:CDS
CCGCATGCTCAATTAAGTTT+CGG 0.407021 1:+73739472 None:intergenic
ATAGAGCAATTACCTATAAC+AGG 0.408205 1:+73741481 None:intergenic
ATGAATTGAAGGCTTCATAA+AGG 0.410184 1:-73738689 MsG0180004128.01.T01:exon
GAGACAAATGCAATTTGGTT+TGG 0.428004 1:-73738483 MsG0180004128.01.T01:three_prime_UTR
CTTCATAAAGGATGGATTCA+TGG 0.431048 1:-73738677 MsG0180004128.01.T01:exon
TACAGGCAGTTGAATTTGGT+TGG 0.435495 1:+73740256 None:intergenic
GTTGTACCAATGGACTTCTC+TGG 0.441414 1:-73740183 MsG0180004128.01.T01:CDS
GGCACAGGCTCGATTTGGAT+TGG 0.445538 1:-73738712 MsG0180004128.01.T01:intron
TGACATAGGTGGTAATATAT+CGG 0.452189 1:-73740686 MsG0180004128.01.T01:intron
CAGAGCAATGGATTTCTTGG+TGG 0.470381 1:-73739502 MsG0180004128.01.T01:CDS
CTACTTGTACCAAACTATAC+AGG 0.482133 1:+73740239 None:intergenic
TTGTGATTCTCTTCAAGGAA+AGG 0.512151 1:+73739179 None:intergenic
CGATGAAGCTTGCTCCTGAT+AGG 0.512345 1:-73739277 MsG0180004128.01.T01:CDS
CAGAAAACAAGTCATTTGTA+AGG 0.518851 1:+73738524 None:intergenic
ATGGACTTCTCTGGCTTACA+AGG 0.522903 1:-73740174 MsG0180004128.01.T01:intron
TCCTGATAGGAAGAAATTCA+TGG 0.526707 1:-73739264 MsG0180004128.01.T01:CDS
ATTGAAGGCTTCATAAAGGA+TGG 0.526907 1:-73738685 MsG0180004128.01.T01:exon
GACAGAAGTCTATTGATGAA+TGG 0.529935 1:-73738655 MsG0180004128.01.T01:three_prime_UTR
CTTGTTATAGGAATCAGTAC+AGG 0.533723 1:+73739431 None:intergenic
ATGTAAAATCTTCAGAGCAA+TGG 0.543737 1:-73739514 MsG0180004128.01.T01:intron
CACCTATGTCAGATTTGACA+AGG 0.546300 1:+73740698 None:intergenic
CCGAAACTTAATTGAGCATG+CGG 0.552124 1:-73739472 MsG0180004128.01.T01:CDS
TGTTTGCACACATCCAAGAA+AGG 0.556146 1:+73741511 None:intergenic
ACTTAATTGAGCATGCGGAT+TGG 0.558353 1:-73739467 MsG0180004128.01.T01:CDS
ATAACAAGACTCTAAAGAAG+TGG 0.561369 1:-73739416 MsG0180004128.01.T01:CDS
GGTACAACTGGATGATGCCT+TGG 0.564664 1:+73740198 None:intergenic
GCATCATCCAGTTGTACCAA+TGG 0.585383 1:-73740193 MsG0180004128.01.T01:CDS
AGTTGAAACTAAAACTGCCA+AGG 0.615757 1:-73740215 MsG0180004128.01.T01:CDS
TGTAAGCCAGAGAAGTCCAT+TGG 0.619617 1:+73740177 None:intergenic
ATGGAGGTGATACAGGGAGG+TGG 0.623912 1:-73739245 MsG0180004128.01.T01:CDS
ACCCTTGTCAAATCTGACAT+AGG 0.626109 1:-73740700 MsG0180004128.01.T01:CDS
AAATTCATGGAGGTGATACA+GGG 0.645139 1:-73739251 MsG0180004128.01.T01:CDS
AAGACTCTAAAGAAGTGGCA+TGG 0.651111 1:-73739411 MsG0180004128.01.T01:CDS
CTTGTCAAATCTGACATAGG+TGG 0.659236 1:-73740697 MsG0180004128.01.T01:CDS
AAGCATGTAAAGTCTGAACA+GGG 0.684936 1:-73741550 MsG0180004128.01.T01:CDS
ACCTATGTCAGATTTGACAA+GGG 0.696405 1:+73740699 None:intergenic
TTCATGGAGGTGATACAGGG+AGG 0.725186 1:-73739248 MsG0180004128.01.T01:CDS
TGATAGGAAGAAATTCATGG+AGG 0.764708 1:-73739261 MsG0180004128.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+CGG + Chr1:73739437-73739418 None:intergenic 0.0%
!! AAAAAAAACTTAAATTGTAT+TGG - Chr1:73739676-73739695 MsG0180004128.01.T01:intron 10.0%
!! TAAAGATATTAATTTCTTAA+AGG - Chr1:73741277-73741296 MsG0180004128.01.T01:intron 10.0%
!! TTTGATAAAAAATATAAGTT+TGG + Chr1:73739655-73739674 None:intergenic 10.0%
!!! TCTAAATCATTTTAATTTTA+AGG - Chr1:73739043-73739062 MsG0180004128.01.T01:intron 10.0%
!! AAATAAAGATTAGGAAAAAA+AGG - Chr1:73740028-73740047 MsG0180004128.01.T01:intron 15.0%
!! AATACTAACAAATTACATAA+AGG + Chr1:73740477-73740496 None:intergenic 15.0%
!! AGAAATTAATATCTTTATCA+TGG + Chr1:73741274-73741293 None:intergenic 15.0%
!! GGAATATTAGATTAAATTTA+TGG + Chr1:73738683-73738702 None:intergenic 15.0%
!!! TTTTCAAATTCATATTTAGT+TGG - Chr1:73739569-73739588 MsG0180004128.01.T01:intron 15.0%
!! AATATTTCATTAAGAGGAAA+AGG - Chr1:73739067-73739086 MsG0180004128.01.T01:intron 20.0%
!! ACTTATAATTTCTACTGTTA+TGG - Chr1:73739916-73739935 MsG0180004128.01.T01:intron 20.0%
!! TAAGGAAATATTTCATTAAG+AGG - Chr1:73739061-73739080 MsG0180004128.01.T01:intron 20.0%
!! TATGCATTTGATTATTCAAA+CGG + Chr1:73738641-73738660 None:intergenic 20.0%
!! TATTGAACTATATTTGCATT+TGG - Chr1:73741593-73741612 MsG0180004128.01.T01:CDS 20.0%
!! TGATACAAGTAATCATATTA+TGG + Chr1:73739267-73739286 None:intergenic 20.0%
!!! ACTACATTTTATAGAACTTT+TGG - Chr1:73739616-73739635 MsG0180004128.01.T01:intron 20.0%
!!! ATGTTTTTTTTTAGCATGTA+TGG - Chr1:73738871-73738890 MsG0180004128.01.T01:intron 20.0%
!!! CATGTTTTAATGTACAAATT+TGG - Chr1:73738894-73738913 MsG0180004128.01.T01:intron 20.0%
!!! GGATTTGTTTTCTATTTTTT+AGG - Chr1:73740682-73740701 MsG0180004128.01.T01:intron 20.0%
!!! TTTTTCTTCAATTTATGTTG+AGG - Chr1:73740372-73740391 MsG0180004128.01.T01:intron 20.0%
! AAACATATACTTCCTGTTAT+AGG - Chr1:73738547-73738566 MsG0180004128.01.T01:three_prime_UTR 25.0%
! AACTTAAATAACCAAGAAAC+AGG + Chr1:73739023-73739042 None:intergenic 25.0%
! ACAACAAAATGTCAAATCAA+AGG + Chr1:73738587-73738606 None:intergenic 25.0%
! ATGCATTTGATTATTCAAAC+GGG + Chr1:73738640-73738659 None:intergenic 25.0%
! GAAAAACACAAGATAAAAAC+AGG + Chr1:73739392-73739411 None:intergenic 25.0%
! GAACAGTCAAAATAAAGATT+AGG - Chr1:73740019-73740038 MsG0180004128.01.T01:intron 25.0%
! TAAGTTAAGCAGTAATTGTT+TGG + Chr1:73739901-73739920 None:intergenic 25.0%
! TATATTGGCATCCAAAATAA+TGG - Chr1:73741457-73741476 MsG0180004128.01.T01:intron 25.0%
! TCTAGCTAAAATAATCCTTT+CGG + Chr1:73740076-73740095 None:intergenic 25.0%
! TTATAATTGAAGCTACTGAA+AGG + Chr1:73740343-73740362 None:intergenic 25.0%
! TTTATTATCTTTCAGCTCAA+TGG - Chr1:73740312-73740331 MsG0180004128.01.T01:intron 25.0%
!! GGTTGGATTAGATAAATATT+TGG + Chr1:73739770-73739789 None:intergenic 25.0%
!! GTAACAAATATTTTACCTAC+AGG - Chr1:73740737-73740756 MsG0180004128.01.T01:intron 25.0%
!! TGTTATCATGTCCATTATTT+TGG + Chr1:73741471-73741490 None:intergenic 25.0%
!! TTGGTTCTTTAATTATACTG+TGG - Chr1:73738913-73738932 MsG0180004128.01.T01:intron 25.0%
!!! AACTTAAAAGCTTGTTGTTT+TGG - Chr1:73741307-73741326 MsG0180004128.01.T01:intron 25.0%
!!! TGTATGTTTTTGATAGAGAT+GGG + Chr1:73739117-73739136 None:intergenic 25.0%
!!! TGTTGTGTTTTATTTTGTGA+GGG - Chr1:73738601-73738620 MsG0180004128.01.T01:three_prime_UTR 25.0%
!!! TTACTAATTTTGTTTTCCCA+TGG - Chr1:73740421-73740440 MsG0180004128.01.T01:intron 25.0%
!!! TTGTTGTGTTTTATTTTGTG+AGG - Chr1:73738600-73738619 MsG0180004128.01.T01:three_prime_UTR 25.0%
AAAATGTTCACATACTGCTA+AGG + Chr1:73738985-73739004 None:intergenic 30.0%
AAATGTTCACATACTGCTAA+GGG + Chr1:73738984-73739003 None:intergenic 30.0%
AGCAAAACACAAAAATGGAA+GGG - Chr1:73738437-73738456 MsG0180004128.01.T01:three_prime_UTR 30.0%
ATAGAGCAATTACCTATAAC+AGG + Chr1:73738562-73738581 None:intergenic 30.0%
ATAGTATAGCCATATAACCA+TGG + Chr1:73739518-73739537 None:intergenic 30.0%
ATGAATTGAAGGCTTCATAA+AGG - Chr1:73741351-73741370 MsG0180004128.01.T01:intron 30.0%
ATGCAATATCTGTGCATTTA+TGG - Chr1:73738944-73738963 MsG0180004128.01.T01:intron 30.0%
ATGTAAAATCTTCAGAGCAA+TGG - Chr1:73740526-73740545 MsG0180004128.01.T01:intron 30.0%
ATGTTGAGACAAATGCAATT+TGG - Chr1:73741552-73741571 MsG0180004128.01.T01:CDS 30.0%
ATTCTTATGGCAGATAAGTT+TGG - Chr1:73739307-73739326 MsG0180004128.01.T01:intron 30.0%
ATTGCTGACATTAATCTACA+AGG - Chr1:73740929-73740948 MsG0180004128.01.T01:intron 30.0%
CAATATAGAAACAGAGTTTC+AGG + Chr1:73741444-73741463 None:intergenic 30.0%
CAGAAAACAAGTCATTTGTA+AGG + Chr1:73741519-73741538 None:intergenic 30.0%
CATGACACATTAATTGATCT+TGG + Chr1:73741105-73741124 None:intergenic 30.0%
CCAAAAATGCAATATGATAC+TGG - Chr1:73740146-73740165 MsG0180004128.01.T01:intron 30.0%
GAAAAGGAATAGAAAACAAG+AGG - Chr1:73739083-73739102 MsG0180004128.01.T01:intron 30.0%
TAGTACAGAGTAAGAATATG+TGG + Chr1:73739719-73739738 None:intergenic 30.0%
TATATGCATAAGATTCCGAA+AGG - Chr1:73740058-73740077 MsG0180004128.01.T01:intron 30.0%
TCATGTAGTATATGGTAACA+TGG - Chr1:73740710-73740729 MsG0180004128.01.T01:CDS 30.0%
TCGGAATCTTATGCATATAT+TGG + Chr1:73740057-73740076 None:intergenic 30.0%
TGACATAGGTGGTAATATAT+CGG - Chr1:73739354-73739373 MsG0180004128.01.T01:intron 30.0%
TGCATAGACTTGAATTGATT+TGG + Chr1:73738704-73738723 None:intergenic 30.0%
TTGTGTTACAATTTGATGCT+TGG - Chr1:73739224-73739243 MsG0180004128.01.T01:CDS 30.0%
! AAACAAATAAGCATTTGCTG+AGG + Chr1:73740454-73740473 None:intergenic 30.0%
! ATAACAAGACTCTAAAGAAG+TGG - Chr1:73740624-73740643 MsG0180004128.01.T01:intron 30.0%
! ATTTGGATTGGATGAATTGA+AGG - Chr1:73741340-73741359 MsG0180004128.01.T01:intron 30.0%
! CCAGTATCATATTGCATTTT+TGG + Chr1:73740149-73740168 None:intergenic 30.0%
!! CTGAAACTCTGTTTCTATAT+TGG - Chr1:73741442-73741461 MsG0180004128.01.T01:intron 30.0%
!! CTTCTTTAGAGTCTTGTTAT+AGG + Chr1:73740624-73740643 None:intergenic 30.0%
!! GTGTATGTTTTTGATAGAGA+TGG + Chr1:73739118-73739137 None:intergenic 30.0%
!!! ACTGTTTTTAACCTGTTTCT+TGG - Chr1:73739009-73739028 MsG0180004128.01.T01:intron 30.0%
!!! CAAATGACTTGTTTTCTGTT+TGG - Chr1:73741521-73741540 MsG0180004128.01.T01:CDS 30.0%
!!! CTAATTGAGTCACTTTTTCA+AGG - Chr1:73740264-73740283 MsG0180004128.01.T01:CDS 30.0%
!!! GTTGTGTTTTATTTTGTGAG+GGG - Chr1:73738602-73738621 MsG0180004128.01.T01:three_prime_UTR 30.0%
AAAAAAGAGAGTGAGAATGC+AGG + Chr1:73741413-73741432 None:intergenic 35.0%
AAAACATGCCACACAATCAT+CGG + Chr1:73738858-73738877 None:intergenic 35.0%
AAAGCATGTAAAGTCTGAAC+AGG - Chr1:73738489-73738508 MsG0180004128.01.T01:three_prime_UTR 35.0%
AAATTCATGGAGGTGATACA+GGG - Chr1:73740789-73740808 MsG0180004128.01.T01:intron 35.0%
AACCATGGTATGTCATCTTA+AGG + Chr1:73739503-73739522 None:intergenic 35.0%
AAGCATGTAAAGTCTGAACA+GGG - Chr1:73738490-73738509 MsG0180004128.01.T01:three_prime_UTR 35.0%
AATGTTCACATACTGCTAAG+GGG + Chr1:73738983-73739002 None:intergenic 35.0%
ACATCTGCATGAAATCATCT+GGG - Chr1:73741046-73741065 MsG0180004128.01.T01:intron 35.0%
ACCTATGTCAGATTTGACAA+GGG + Chr1:73739344-73739363 None:intergenic 35.0%
ACTATACAGGCAGTTGAATT+TGG + Chr1:73739791-73739810 None:intergenic 35.0%
AGTATGTGTCGAATATAAGG+AGG + Chr1:73738812-73738831 None:intergenic 35.0%
AGTTGAAACTAAAACTGCCA+AGG - Chr1:73739825-73739844 MsG0180004128.01.T01:intron 35.0%
ATTATCTTTCAGCTCAATGG+TGG - Chr1:73740315-73740334 MsG0180004128.01.T01:intron 35.0%
ATTCAACTGCCTGTATAGTT+TGG - Chr1:73739792-73739811 MsG0180004128.01.T01:intron 35.0%
ATTGAAGGCTTCATAAAGGA+TGG - Chr1:73741355-73741374 MsG0180004128.01.T01:intron 35.0%
CAGCAAAACACAAAAATGGA+AGG - Chr1:73738436-73738455 MsG0180004128.01.T01:three_prime_UTR 35.0%
CTACTTGTACCAAACTATAC+AGG + Chr1:73739804-73739823 None:intergenic 35.0%
GAAACTTGTGATTCTCTTCA+AGG + Chr1:73740869-73740888 None:intergenic 35.0%
GACAGAAGTCTATTGATGAA+TGG - Chr1:73741385-73741404 MsG0180004128.01.T01:intron 35.0%
GAGACAAATGCAATTTGGTT+TGG - Chr1:73741557-73741576 MsG0180004128.01.T01:CDS 35.0%
GATGACATACCATGGTTATA+TGG - Chr1:73739506-73739525 MsG0180004128.01.T01:intron 35.0%
GCTAGTATGTGTCGAATATA+AGG + Chr1:73738815-73738834 None:intergenic 35.0%
TAATCTACAAGGCCTGAAAA+AGG - Chr1:73740940-73740959 MsG0180004128.01.T01:intron 35.0%
TACATCTGCATGAAATCATC+TGG - Chr1:73741045-73741064 MsG0180004128.01.T01:intron 35.0%
TAGGCTCAATAAAGATACAG+CGG + Chr1:73738774-73738793 None:intergenic 35.0%
TATACCTTGAAGTGTATGCT+GGG - Chr1:73739535-73739554 MsG0180004128.01.T01:intron 35.0%
TATTTGGATTCCAATCTCTG+CGG + Chr1:73739754-73739773 None:intergenic 35.0%
TCCATGAATTTCTTCCTATC+AGG + Chr1:73740780-73740799 None:intergenic 35.0%
TCCTGATAGGAAGAAATTCA+TGG - Chr1:73740776-73740795 MsG0180004128.01.T01:intron 35.0%
TGAAGAGAATCACAAGTTTC+TGG - Chr1:73740869-73740888 MsG0180004128.01.T01:intron 35.0%
TGATAGGAAGAAATTCATGG+AGG - Chr1:73740779-73740798 MsG0180004128.01.T01:intron 35.0%
TGTGCAGCAAAACACAAAAA+TGG - Chr1:73738432-73738451 MsG0180004128.01.T01:three_prime_UTR 35.0%
TTCCTTAAGATGACATACCA+TGG - Chr1:73739498-73739517 MsG0180004128.01.T01:CDS 35.0%
TTGTGATTCTCTTCAAGGAA+AGG + Chr1:73740864-73740883 None:intergenic 35.0%
TTTGTGAGGGGAATATAGAA+TGG - Chr1:73738614-73738633 MsG0180004128.01.T01:three_prime_UTR 35.0%
! CTTCATAAAGGATGGATTCA+TGG - Chr1:73741363-73741382 MsG0180004128.01.T01:intron 35.0%
! CTTGTTATAGGAATCAGTAC+AGG + Chr1:73740612-73740631 None:intergenic 35.0%
! GTTCATCTTGGATTTGAGAT+TGG - Chr1:73741075-73741094 MsG0180004128.01.T01:intron 35.0%
! TGTATCATTGTTGACTGAAC+TGG - Chr1:73739280-73739299 MsG0180004128.01.T01:CDS 35.0%
!! AGGAGTGTTCATGTAGTATA+TGG - Chr1:73740702-73740721 MsG0180004128.01.T01:CDS 35.0%
!! CTGAACTGGTGTTATTCTTA+TGG - Chr1:73739294-73739313 MsG0180004128.01.T01:intron 35.0%
!! TAGTTCTAGCTTCACTGTAA+GGG - Chr1:73740661-73740680 MsG0180004128.01.T01:intron 35.0%
!! TCCCTGCATTTTGAAAACAA+GGG - Chr1:73740986-73741005 MsG0180004128.01.T01:intron 35.0%
!! TTCCCTGCATTTTGAAAACA+AGG - Chr1:73740985-73741004 MsG0180004128.01.T01:intron 35.0%
!!! ATCCCTTGTTTTCAAAATGC+AGG + Chr1:73740991-73741010 None:intergenic 35.0%
!!! ATGACTTGTTTTCTGTTTGG+TGG - Chr1:73741524-73741543 MsG0180004128.01.T01:CDS 35.0%
!!! CACTTTTTCAAGGTGTGTTA+GGG - Chr1:73740274-73740293 MsG0180004128.01.T01:CDS 35.0%
!!! GCATTTTTGGTCCCAAATTT+TGG + Chr1:73740136-73740155 None:intergenic 35.0%
!!! TATGTTGAGGTTTTGAAGCT+CGG - Chr1:73740385-73740404 MsG0180004128.01.T01:intron 35.0%
!!! TCACTTTTTCAAGGTGTGTT+AGG - Chr1:73740273-73740292 MsG0180004128.01.T01:CDS 35.0%
!!! TCCCTTGTTTTCAAAATGCA+GGG + Chr1:73740990-73741009 None:intergenic 35.0%
!!! TTTTGTTTTCCCATGGTTAG+AGG - Chr1:73740428-73740447 MsG0180004128.01.T01:intron 35.0%
AATGCAGAGTTTCAGGGATT+TGG + Chr1:73741145-73741164 None:intergenic 40.0%
AATTCTGTCACAGCCTTTCT+TGG - Chr1:73738516-73738535 MsG0180004128.01.T01:three_prime_UTR 40.0%
ACACGATAATGCAGAGTTTC+AGG + Chr1:73741152-73741171 None:intergenic 40.0%
ACATACTGCTAAGGGGTAAA+AGG + Chr1:73738976-73738995 None:intergenic 40.0%
ACCCTTGTCAAATCTGACAT+AGG - Chr1:73739340-73739359 MsG0180004128.01.T01:intron 40.0%
ACTTAATTGAGCATGCGGAT+TGG - Chr1:73740573-73740592 MsG0180004128.01.T01:intron 40.0%
AGATTACTCCGATGATTGTG+TGG - Chr1:73738847-73738866 MsG0180004128.01.T01:intron 40.0%
CACCTATGTCAGATTTGACA+AGG + Chr1:73739345-73739364 None:intergenic 40.0%
CACGATAATGCAGAGTTTCA+GGG + Chr1:73741151-73741170 None:intergenic 40.0%
CCGAAACTTAATTGAGCATG+CGG - Chr1:73740568-73740587 MsG0180004128.01.T01:intron 40.0%
CCGCATGCTCAATTAAGTTT+CGG + Chr1:73740571-73740590 None:intergenic 40.0%
CGTGCAAAACAAACTCTACT+TGG + Chr1:73739992-73740011 None:intergenic 40.0%
CTATACCTTGAAGTGTATGC+TGG - Chr1:73739534-73739553 MsG0180004128.01.T01:intron 40.0%
CTTGTCAAATCTGACATAGG+TGG - Chr1:73739343-73739362 MsG0180004128.01.T01:intron 40.0%
GAAATTCATGGAGGTGATAC+AGG - Chr1:73740788-73740807 MsG0180004128.01.T01:intron 40.0%
GAGGAGTAAGGTAAAGAAGT+AGG + Chr1:73738793-73738812 None:intergenic 40.0%
GCACGTGCTTTCCAAAATTT+GGG - Chr1:73740122-73740141 MsG0180004128.01.T01:intron 40.0%
GTCGAATATAAGGAGGAGTA+AGG + Chr1:73738805-73738824 None:intergenic 40.0%
GTGTGTGTGTGTTTGTGTAT+TGG + Chr1:73741226-73741245 None:intergenic 40.0%
TACAGGCAGTTGAATTTGGT+TGG + Chr1:73739787-73739806 None:intergenic 40.0%
TCTGGGAACAATGTTCATCT+TGG - Chr1:73741063-73741082 MsG0180004128.01.T01:intron 40.0%
TGAAAAAGGAGACTGAACTG+TGG - Chr1:73740954-73740973 MsG0180004128.01.T01:intron 40.0%
TGCACGTGCTTTCCAAAATT+TGG - Chr1:73740121-73740140 MsG0180004128.01.T01:intron 40.0%
TGTGTCATGCATTTACTGCA+CGG - Chr1:73741116-73741135 MsG0180004128.01.T01:intron 40.0%
TGTTTGCACACATCCAAGAA+AGG + Chr1:73738532-73738551 None:intergenic 40.0%
! AAGACTCTAAAGAAGTGGCA+TGG - Chr1:73740629-73740648 MsG0180004128.01.T01:intron 40.0%
! ACAGTTCAGTCTCCTTTTTC+AGG + Chr1:73740955-73740974 None:intergenic 40.0%
! ATAGTGGCGATTTAGGTTAC+AGG + Chr1:73738736-73738755 None:intergenic 40.0%
! CTTCAGAGCAATGGATTTCT+TGG - Chr1:73740535-73740554 MsG0180004128.01.T01:intron 40.0%
! GTCTTTTAAGCTGCAGATAG+TGG + Chr1:73738752-73738771 None:intergenic 40.0%
!! CTAGTTCTAGCTTCACTGTA+AGG - Chr1:73740660-73740679 MsG0180004128.01.T01:intron 40.0%
!! CTTGTTTTCTGTTTGGTGGA+TGG - Chr1:73741528-73741547 MsG0180004128.01.T01:CDS 40.0%
!!! AAAGCTTGTTGTTTTGGCAC+AGG - Chr1:73741313-73741332 MsG0180004128.01.T01:intron 40.0%
GAGAAGTCCATTGGTACAAC+TGG + Chr1:73739857-73739876 None:intergenic 45.0%
GCATCATCCAGTTGTACCAA+TGG - Chr1:73739847-73739866 MsG0180004128.01.T01:intron 45.0%
TACACCCAGCATACACTTCA+AGG + Chr1:73739542-73739561 None:intergenic 45.0%
TGTAAGCCAGAGAAGTCCAT+TGG + Chr1:73739866-73739885 None:intergenic 45.0%
TTGACTTTCACCGCAGAGAT+TGG - Chr1:73739741-73739760 MsG0180004128.01.T01:intron 45.0%
! ATGGACTTCTCTGGCTTACA+AGG - Chr1:73739866-73739885 MsG0180004128.01.T01:intron 45.0%
! CAGAGCAATGGATTTCTTGG+TGG - Chr1:73740538-73740557 MsG0180004128.01.T01:intron 45.0%
! GACTGTTTTCGCTGCTACAT+TGG - Chr1:73738459-73738478 MsG0180004128.01.T01:three_prime_UTR 45.0%
! GTTGTACCAATGGACTTCTC+TGG - Chr1:73739857-73739876 MsG0180004128.01.T01:intron 45.0%
! GTTTTCGCTGCTACATTGGA+AGG - Chr1:73738463-73738482 MsG0180004128.01.T01:three_prime_UTR 45.0%
!! GCAAGAATGTTTGCTATGCG+TGG - Chr1:73740216-73740235 MsG0180004128.01.T01:CDS 45.0%
!! ATATATATATATATATATAC+GGG + Chr1:73739417-73739436 None:intergenic 5.0%
!!! AATATATATATTTCTAAATA+TGG + Chr1:73741186-73741205 None:intergenic 5.0%
CAAGCTTCATCGCTACCTGT+AGG + Chr1:73740755-73740774 None:intergenic 50.0%
GGAGACTGAACTGTGGACTT+TGG - Chr1:73740961-73740980 MsG0180004128.01.T01:intron 50.0%
GGTACAACTGGATGATGCCT+TGG + Chr1:73739845-73739864 None:intergenic 50.0%
TTCATGGAGGTGATACAGGG+AGG - Chr1:73740792-73740811 MsG0180004128.01.T01:intron 50.0%
TTGCTGAGGCCTCTAACCAT+GGG + Chr1:73740440-73740459 None:intergenic 50.0%
TTTGCTGAGGCCTCTAACCA+TGG + Chr1:73740441-73740460 None:intergenic 50.0%
! CGATGAAGCTTGCTCCTGAT+AGG - Chr1:73740763-73740782 MsG0180004128.01.T01:intron 50.0%
! CTCTAAAGAAGTGGCATGGC+TGG - Chr1:73740633-73740652 MsG0180004128.01.T01:intron 50.0%
! GCTGCAGATAGTGGCGATTT+AGG + Chr1:73738743-73738762 None:intergenic 50.0%
!! GTTTTGGCACAGGCTCGATT+TGG - Chr1:73741323-73741342 MsG0180004128.01.T01:intron 50.0%
ATGGAGGTGATACAGGGAGG+TGG - Chr1:73740795-73740814 MsG0180004128.01.T01:intron 55.0%
!! GGCACAGGCTCGATTTGGAT+TGG - Chr1:73741328-73741347 MsG0180004128.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 73738424 73741638 73738424 ID=MsG0180004128.01;Name=MsG0180004128.01
Chr1 mRNA 73738424 73741638 73738424 ID=MsG0180004128.01.T01;Parent=MsG0180004128.01;Name=MsG0180004128.01.T01;_AED=0.40;_eAED=0.42;_QI=0|0.8|0.66|1|1|1|6|268|211
Chr1 exon 73738424 73738727 73738424 ID=MsG0180004128.01.T01:exon:5378;Parent=MsG0180004128.01.T01
Chr1 exon 73739172 73739303 73739172 ID=MsG0180004128.01.T01:exon:5377;Parent=MsG0180004128.01.T01
Chr1 exon 73739386 73739521 73739386 ID=MsG0180004128.01.T01:exon:5376;Parent=MsG0180004128.01.T01
Chr1 exon 73740175 73740305 73740175 ID=MsG0180004128.01.T01:exon:5375;Parent=MsG0180004128.01.T01
Chr1 exon 73740687 73740742 73740687 ID=MsG0180004128.01.T01:exon:5374;Parent=MsG0180004128.01.T01
Chr1 exon 73741494 73741638 73741494 ID=MsG0180004128.01.T01:exon:5373;Parent=MsG0180004128.01.T01
Chr1 CDS 73741494 73741638 73741494 ID=MsG0180004128.01.T01:cds;Parent=MsG0180004128.01.T01
Chr1 CDS 73740687 73740742 73740687 ID=MsG0180004128.01.T01:cds;Parent=MsG0180004128.01.T01
Chr1 CDS 73740175 73740305 73740175 ID=MsG0180004128.01.T01:cds;Parent=MsG0180004128.01.T01
Chr1 CDS 73739386 73739521 73739386 ID=MsG0180004128.01.T01:cds;Parent=MsG0180004128.01.T01
Chr1 CDS 73739172 73739303 73739172 ID=MsG0180004128.01.T01:cds;Parent=MsG0180004128.01.T01
Chr1 CDS 73738692 73738727 73738692 ID=MsG0180004128.01.T01:cds;Parent=MsG0180004128.01.T01
Chr1 three_prime_UTR 73738424 73738691 73738424 ID=MsG0180004128.01.T01:three_prime_utr;Parent=MsG0180004128.01.T01
Gene Sequence

>MsG0180004128.01.T01

ATGTGTCATGTGCAGCAAAACACAAAAATGGAAGGGACTGTTTTCGCTGCTACATTGGAAGGAATAAAGCATGTAAAGTCTGAACAGGGAGAAATTCTGTCACAGCCTTTCTTGGATGTGTGCAAACATATACTTCCTGTTATAGATAAGTTTGGAGCTGCTATGACCCTTGTCAAATCTGACATAGGTGGTAATATATCGAGATTGGAATCCAAATATTTATCTAATCCAACCAAATTCAACTGCCTGTATAGTTTGGTACAAGTAGAAGTTGAAACTAAAACTGCCAAGGCATCATCCAGTTGTACCAATGGACTTCTCTGGCTTACAAGAGCAATGGATTTCTTGGTGGCACTGTTCCGAAACTTAATTGAGCATGCGGATTGGTCAATGTCACAAGCCTGTACTGATTCCTATAACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCTAGTTCTAGCTTCACTGTAGCGATGAAGCTTGCTCCTGATAGGAAGAAATTCATGGAGGTGATACAGGGAGGTGGTGATATCAATGCTGACATTGAGCAATTTTGTACTAGCTTTTCTCCTTTCCTTGAAGAGAATCACAAGTTTCTGGCTCGATTTGGATTGGATGAATTGAAGGCTTCATAA

Protein sequence

>MsG0180004128.01.T01

MCHVQQNTKMEGTVFAATLEGIKHVKSEQGEILSQPFLDVCKHILPVIDKFGAAMTLVKSDIGGNISRLESKYLSNPTKFNCLYSLVQVEVETKTAKASSSCTNGLLWLTRAMDFLVALFRNLIEHADWSMSQACTDSYNKTLKKWHGWLASSSFTVAMKLAPDRKKFMEVIQGGGDINADIEQFCTSFSPFLEENHKFLARFGLDELKAS*