AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042991.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042991.01.T01 MTR_4g094750 98.750 80 1 0 1 80 1 80 6.64e-55 164
MsG0880042991.01.T02 MTR_4g094750 98.750 80 1 0 1 80 1 80 5.63e-55 164
MsG0880042991.01.T03 MTR_4g094750 96.250 80 1 1 1 78 1 80 1.98e-51 155
MsG0880042991.01.T04 MTR_4g094750 98.246 57 1 0 1 57 1 57 2.24e-37 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042991.01.T01 AT1G47278 56.250 80 35 0 1 80 1 80 2.70e-30 102
MsG0880042991.01.T01 AT1G47278 56.250 80 35 0 1 80 1 80 2.70e-30 102
MsG0880042991.01.T01 AT1G47278 56.250 80 35 0 1 80 12 91 3.16e-30 102
MsG0880042991.01.T02 AT1G47278 57.500 80 34 0 1 80 1 80 5.04e-31 104
MsG0880042991.01.T02 AT1G47278 57.500 80 34 0 1 80 1 80 5.04e-31 104
MsG0880042991.01.T02 AT1G47278 57.500 80 34 0 1 80 12 91 7.11e-31 104
MsG0880042991.01.T03 AT1G47278 53.750 80 35 1 1 78 1 80 7.22e-27 93.6
MsG0880042991.01.T03 AT1G47278 53.750 80 35 1 1 78 1 80 7.22e-27 93.6
MsG0880042991.01.T03 AT1G47278 53.750 80 35 1 1 78 12 91 8.50e-27 94.0
MsG0880042991.01.T04 AT1G47278 52.632 57 27 0 1 57 1 57 2.34e-18 71.2
MsG0880042991.01.T04 AT1G47278 52.632 57 27 0 1 57 1 57 2.34e-18 71.2
MsG0880042991.01.T04 AT1G47278 52.632 57 27 0 1 57 12 68 2.81e-18 71.2

Find 13 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATAATGGGGCGGAAAGC+TGG 0.409342 8:+17261374 MsG0880042991.01.T01:intron
AAATGCATGTATAGAATCTC+AGG 0.468906 8:+17261529 MsG0880042991.01.T01:intron
TAATGGGGCGGAAAGCTGGC+GGG 0.509687 8:+17261378 MsG0880042991.01.T01:intron
ACTTCATAAACCTTGCATGA+AGG 0.526107 8:+17261430 MsG0880042991.01.T01:intron
GATCATGTTTATGAACTGTA+TGG 0.548690 8:+17261457 MsG0880042991.01.T01:intron
ATGATCATTTCCTTCATGCA+AGG 0.553694 8:-17261440 None:intergenic
ATAATGGGGCGGAAAGCTGG+CGG 0.563977 8:+17261377 MsG0880042991.01.T01:intron
ATCAACTACAGAGTCGTGGA+AGG 0.628315 8:+17253560 MsG0880042991.01.T01:intron
TGAAGCATGTGCTAAGCAGA+AGG 0.631587 8:+17261499 MsG0880042991.01.T01:intron
AATTATCAACTACAGAGTCG+TGG 0.639476 8:+17253556 MsG0880042991.01.T01:intron
CAAGTTGTAGGATAATGGGG+CGG 0.699621 8:+17261366 MsG0880042991.01.T01:intron
AAAAGAACAGAAAGTCTTGG+GGG 0.704646 8:+17253527 MsG0880042991.01.T01:intron
CACATGCTTCAACATCACTG+TGG 0.742984 8:-17261487 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAATTTATTATATTT+TGG + Chr8:17258326-17258345 MsG0880042991.01.T01:intron 0.0%
!!! AATAAATTTTAATAAATAAA+TGG + Chr8:17254639-17254658 MsG0880042991.01.T01:intron 0.0%
!! AAAAAAAAAGTCAAAATATT+AGG + Chr8:17259409-17259428 MsG0880042991.01.T01:intron 10.0%
!! AAATCAAATCATATATTTAA+TGG + Chr8:17261019-17261038 MsG0880042991.01.T01:intron 10.0%
!! ATAAATTGTTTAGTTAATTA+AGG + Chr8:17254654-17254673 MsG0880042991.01.T01:intron 10.0%
!! TTTCAATATAACTAAATAAA+TGG - Chr8:17253668-17253687 None:intergenic 10.0%
!!! ATAAAGAATAAATTTTTGAT+CGG - Chr8:17254532-17254551 None:intergenic 10.0%
!!! ATTATATTTTGGAATTATTA+TGG + Chr8:17258337-17258356 MsG0880042991.01.T01:intron 10.0%
!!! ATTTGTTTTTAATTTAAGTA+TGG - Chr8:17258811-17258830 None:intergenic 10.0%
!!! TTTGTTTTTAATTTAAGTAT+GGG - Chr8:17258810-17258829 None:intergenic 10.0%
!! ATAAATTGTTTAGTTAATCA+AGG + Chr8:17257142-17257161 MsG0880042991.01.T01:intron 15.0%
!! ATATAGATTATATTCAGATT+CGG - Chr8:17254299-17254318 None:intergenic 15.0%
!! ATTAAAATTCATGCATTATT+CGG + Chr8:17258578-17258597 MsG0880042991.01.T01:intron 15.0%
!! ATTTACAAACATAATAACTT+TGG - Chr8:17260776-17260795 None:intergenic 15.0%
!! TACAAATATAAATTACATTC+TGG - Chr8:17255500-17255519 None:intergenic 15.0%
!!! AACAAATGTTTTTTTTAGAA+TGG - Chr8:17257264-17257283 None:intergenic 15.0%
!!! AAGTGAAATTTGTTTATTAT+AGG - Chr8:17255009-17255028 None:intergenic 15.0%
!!! ACAAGTTAAAATTCATTTTA+TGG + Chr8:17259537-17259556 MsG0880042991.01.T01:intron 15.0%
!!! ATAAAGAATAACTTTTTGAT+TGG - Chr8:17255761-17255780 None:intergenic 15.0%
!!! ATAAATTACTTGTTATGTAA+AGG - Chr8:17259119-17259138 None:intergenic 15.0%
!!! CAAGTTAAAATTCATTTTAT+GGG + Chr8:17259538-17259557 MsG0880042991.01.T01:intron 15.0%
!!! GTTAGTCTATAAATTTAATT+TGG - Chr8:17257756-17257775 None:intergenic 15.0%
!!! TAATTAGTTCTCTATTTTAA+TGG + Chr8:17259995-17260014 MsG0880042991.01.T01:intron 15.0%
!!! TATAGATTATATTCAAGTTT+CGG - Chr8:17256749-17256768 None:intergenic 15.0%
!!! TTTTGAAATTTATATGATGA+AGG + Chr8:17260950-17260969 MsG0880042991.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTTTACCTG+TGG + Chr8:17260527-17260546 MsG0880042991.01.T01:intron 15.0%
!! AAAAGAAACATGTTTGTAAA+TGG + Chr8:17254824-17254843 MsG0880042991.01.T01:intron 20.0%
!! AAGAATGTATGATATGAAAA+AGG - Chr8:17253802-17253821 None:intergenic 20.0%
!! ACAATGATTTCAAAAAGAAT+TGG - Chr8:17255047-17255066 None:intergenic 20.0%
!! ACTTTAATGATATAAAAGTG+TGG - Chr8:17254009-17254028 None:intergenic 20.0%
!! ATAAATGGTTTAGTTAATCA+AGG + Chr8:17255883-17255902 MsG0880042991.01.T01:intron 20.0%
!! ATATGTTTCTTATGAGAAAT+GGG + Chr8:17260125-17260144 MsG0880042991.01.T01:intron 20.0%
!! ATATTGCAATTAGTCATATT+TGG + Chr8:17257564-17257583 MsG0880042991.01.T01:intron 20.0%
!! ATGAAGGAAATTTATTTGAA+GGG + Chr8:17260966-17260985 MsG0880042991.01.T01:intron 20.0%
!! ATTAAAGATTCAATTGATAC+AGG - Chr8:17261900-17261919 None:intergenic 20.0%
!! ATTATATTGAAGAATACCAA+TGG + Chr8:17253699-17253718 MsG0880042991.01.T01:intron 20.0%
!! ATTTGATGAAACATTGAAAA+TGG + Chr8:17254792-17254811 MsG0880042991.01.T01:intron 20.0%
!! CAAACTATAGTACTTTAAAT+AGG - Chr8:17261124-17261143 None:intergenic 20.0%
!! CAAATCATATATTTAATGGT+GGG + Chr8:17261023-17261042 MsG0880042991.01.T01:intron 20.0%
!! GAAACATTGAAAATGAAAAA+CGG + Chr8:17256054-17256073 MsG0880042991.01.T01:intron 20.0%
!! GAATCAAAATCAGAAAATAT+TGG + Chr8:17256353-17256372 MsG0880042991.01.T01:intron 20.0%
!! GTTCATAACATAATGTATTT+AGG - Chr8:17257598-17257617 None:intergenic 20.0%
!! TAAAAATGCATAATTGTTCA+AGG - Chr8:17258053-17258072 None:intergenic 20.0%
!! TATTATTTGATTCAAAAGCA+AGG + Chr8:17259501-17259520 MsG0880042991.01.T01:intron 20.0%
!! TCAAATCATATATTTAATGG+TGG + Chr8:17261022-17261041 MsG0880042991.01.T01:intron 20.0%
!! TGATTGGTATCTTAAAAAAA+TGG - Chr8:17255745-17255764 None:intergenic 20.0%
!! TGTTTATTATAGGCAAAATT+GGG - Chr8:17254999-17255018 None:intergenic 20.0%
!! TTACAAGTTTAGATAGATAA+AGG - Chr8:17257529-17257548 None:intergenic 20.0%
!! TTGTTTATTATAGGCAAAAT+TGG - Chr8:17255000-17255019 None:intergenic 20.0%
!! TTTACATCGTAAATTGAATT+TGG - Chr8:17259744-17259763 None:intergenic 20.0%
!! TTTAGTTATATTGAAAGAGT+TGG + Chr8:17253672-17253691 MsG0880042991.01.T01:intron 20.0%
!! TTTGTTGATCAATAAATCAT+TGG + Chr8:17260990-17261009 MsG0880042991.01.T01:intron 20.0%
!!! AAAAACAGTTTTCATTTTTC+TGG + Chr8:17261335-17261354 MsG0880042991.01.T01:intron 20.0%
!!! AGTTGATGAGTTTTATATTT+TGG + Chr8:17258078-17258097 MsG0880042991.01.T01:intron 20.0%
!!! ATAAATTACATTCTGGTTTT+GGG - Chr8:17255493-17255512 None:intergenic 20.0%
!!! ATAGATTATATTCAAGTTTC+GGG - Chr8:17256748-17256767 None:intergenic 20.0%
!!! ATATCCAATATTTTCTGATT+TGG - Chr8:17253913-17253932 None:intergenic 20.0%
!!! ATGAAAACTGTTTTTTGATT+TGG - Chr8:17261330-17261349 None:intergenic 20.0%
!!! ATGTTCAATATTTTCTTATC+TGG - Chr8:17255100-17255119 None:intergenic 20.0%
!!! ATTTCAAAGTTTTGATTACA+AGG - Chr8:17258152-17258171 None:intergenic 20.0%
!!! ATTTGTTGAAACATTGAAAA+TGG + Chr8:17257277-17257296 MsG0880042991.01.T01:intron 20.0%
!!! CTTTAATGATATAAAAGTGT+GGG - Chr8:17254008-17254027 None:intergenic 20.0%
!!! GTTGATGAGTTTTATATTTT+GGG + Chr8:17258079-17258098 MsG0880042991.01.T01:intron 20.0%
!!! TATAAATTACATTCTGGTTT+TGG - Chr8:17255494-17255513 None:intergenic 20.0%
!!! TATTGATTACAAAATCAAGT+TGG + Chr8:17258237-17258256 MsG0880042991.01.T01:intron 20.0%
!!! TTGAACAATTATGCATTTTT+AGG + Chr8:17258052-17258071 MsG0880042991.01.T01:intron 20.0%
!!! TTTAATGATATAAAAGTGTG+GGG - Chr8:17254007-17254026 None:intergenic 20.0%
!!! TTTAGTTTGTTAAAATCTGA+TGG + Chr8:17261562-17261581 MsG0880042991.01.T01:intron 20.0%
!!! TTTTCATTTTCAATGTAATG+TGG - Chr8:17257387-17257406 None:intergenic 20.0%
! AAAAAGAAAATCATGAGAAG+AGG - Chr8:17261602-17261621 None:intergenic 25.0%
! AAAAGAAAATCATGAGAAGA+GGG - Chr8:17261601-17261620 None:intergenic 25.0%
! AAAATAAGAGAAAGGAAGAA+AGG + Chr8:17257689-17257708 MsG0880042991.01.T01:intron 25.0%
! AAACCACATCCAATTAAAAA+AGG + Chr8:17253954-17253973 MsG0880042991.01.T01:intron 25.0%
! AAACCACATCCAATTAAAAA+GGG + Chr8:17253954-17253973 MsG0880042991.01.T01:intron 25.0%
! AAATACATGTATAGAATCTC+AGG + Chr8:17253372-17253391 MsG0880042991.01.T01:CDS 25.0%
! AAATGAAGATGGAAAGTTAA+AGG - Chr8:17254272-17254291 None:intergenic 25.0%
! AACCACATCCAATTAAAAAA+GGG + Chr8:17255142-17255161 MsG0880042991.01.T01:intron 25.0%
! AATGAAGATGGAAAGTTAAA+GGG - Chr8:17254271-17254290 None:intergenic 25.0%
! ACATATATGGAGGAAAAAAA+AGG - Chr8:17258472-17258491 None:intergenic 25.0%
! ACTTTAATGATACAAAAGTG+TGG - Chr8:17255197-17255216 None:intergenic 25.0%
! ATCATATGCACACAATATTT+CGG - Chr8:17260906-17260925 None:intergenic 25.0%
! ATCTACAATTATGCATTGTT+GGG + Chr8:17259963-17259982 MsG0880042991.01.T01:intron 25.0%
! ATGATTTCAAAAAGAACTGA+TGG - Chr8:17253857-17253876 None:intergenic 25.0%
! ATGATTTCAAAAAGAATTGG+AGG - Chr8:17255044-17255063 None:intergenic 25.0%
! ATGATTTGAAAAAGAATTGG+AGG - Chr8:17256304-17256323 None:intergenic 25.0%
! ATGTATCATTGAAATCACTA+TGG + Chr8:17254349-17254368 MsG0880042991.01.T01:intron 25.0%
! CAAATTATAAAAATCTCACG+TGG - Chr8:17260881-17260900 None:intergenic 25.0%
! CTCCTTATCTTAAAAGAAAT+GGG - Chr8:17260252-17260271 None:intergenic 25.0%
! GAAACATTGAAAATGGAAAA+TGG + Chr8:17254799-17254818 MsG0880042991.01.T01:intron 25.0%
! GAATCCAAATCAGAAAATAT+TGG + Chr8:17253906-17253925 MsG0880042991.01.T01:intron 25.0%
! GAGAGATAAAAATAAGAGAA+AGG + Chr8:17257681-17257700 MsG0880042991.01.T01:intron 25.0%
! GATATGTTTCTTATGAGAAA+TGG + Chr8:17260124-17260143 MsG0880042991.01.T01:intron 25.0%
! GATGAAGGAAATTTATTTGA+AGG + Chr8:17260965-17260984 MsG0880042991.01.T01:intron 25.0%
! GCAATGATTTGAAAAAGAAT+TGG - Chr8:17256307-17256326 None:intergenic 25.0%
! GGTGAAATTAAAAAACTCAT+AGG + Chr8:17258615-17258634 MsG0880042991.01.T01:intron 25.0%
! GTTATCATAGAAGAAATACA+AGG + Chr8:17259018-17259037 MsG0880042991.01.T01:intron 25.0%
! GTTTATGAATATGTTGGATA+TGG + Chr8:17258743-17258762 MsG0880042991.01.T01:intron 25.0%
! TAAAAAGAACAGAAAGTCTT+GGG + Chr8:17253525-17253544 MsG0880042991.01.T01:intron 25.0%
! TAAACCACATCCAATTAAAA+AGG + Chr8:17253953-17253972 MsG0880042991.01.T01:intron 25.0%
! TATAGATTACAACATTGAGA+AGG - Chr8:17258924-17258943 None:intergenic 25.0%
! TATCTACAATTATGCATTGT+TGG + Chr8:17259962-17259981 MsG0880042991.01.T01:intron 25.0%
! TATTCTAGACAAAATTGAGA+AGG - Chr8:17256255-17256274 None:intergenic 25.0%
! TCAGGTAATATAGATTTGAT+AGG + Chr8:17253390-17253409 MsG0880042991.01.T01:intron 25.0%
! TCTCCTTATCTTAAAAGAAA+TGG - Chr8:17260253-17260272 None:intergenic 25.0%
! TGATACAGGAAATATTACAT+TGG - Chr8:17261886-17261905 None:intergenic 25.0%
! TGATACATGAAATATTCCAT+TGG - Chr8:17253718-17253737 None:intergenic 25.0%
! TGGATTGTTTATGAATATGT+TGG + Chr8:17258737-17258756 MsG0880042991.01.T01:intron 25.0%
! TTCATAAATTAACCTTTGCA+TGG + Chr8:17260081-17260100 MsG0880042991.01.T01:intron 25.0%
! TTCCTAGTTGTAAAAACATA+AGG - Chr8:17257487-17257506 None:intergenic 25.0%
! TTGTAGAACAACAACATATA+TGG - Chr8:17258485-17258504 None:intergenic 25.0%
!! AATAGTTGGTGTATGAAATT+TGG + Chr8:17260037-17260056 MsG0880042991.01.T01:intron 25.0%
!! AGAAAATATTGGACACTTTT+TGG + Chr8:17256364-17256383 MsG0880042991.01.T01:intron 25.0%
!! ATGAAAGCTGTTATTTGATT+TGG - Chr8:17253173-17253192 None:intergenic 25.0%
!! CACGTGAGATTTTTATAATT+TGG + Chr8:17260879-17260898 MsG0880042991.01.T01:intron 25.0%
!! CTTTAATGATACAAAAGTGT+GGG - Chr8:17255196-17255215 None:intergenic 25.0%
!! TAGATTATATTCAAGTTTCG+GGG - Chr8:17256747-17256766 None:intergenic 25.0%
!! TTTAATGATACAAAAGTGTG+GGG - Chr8:17255195-17255214 None:intergenic 25.0%
!!! AATAACAGCTTTCATTTTTC+TGG + Chr8:17253178-17253197 MsG0880042991.01.T01:five_prime_UTR 25.0%
!!! AGTATACGATGTGTTTTATT+GGG + Chr8:17260586-17260605 MsG0880042991.01.T01:intron 25.0%
!!! ATTTCAAGTTGTAGGATAAT+GGG + Chr8:17253205-17253224 MsG0880042991.01.T01:intron 25.0%
!!! ATTTCTTTTAAGATAAGGAG+AGG + Chr8:17260252-17260271 MsG0880042991.01.T01:intron 25.0%
!!! CAAGCTATAAACTAGTTTTT+TGG + Chr8:17259243-17259262 MsG0880042991.01.T01:intron 25.0%
!!! CTTTTTTCACTAATTTTCTC+TGG + Chr8:17258278-17258297 MsG0880042991.01.T01:intron 25.0%
!!! GAAAATATTGGACACTTTTT+GGG + Chr8:17256365-17256384 MsG0880042991.01.T01:intron 25.0%
!!! TTCCTTATGTTTTTACAACT+AGG + Chr8:17257482-17257501 MsG0880042991.01.T01:intron 25.0%
!!! TTTAGTTAAGTTGAAAGAGT+TGG + Chr8:17261840-17261859 MsG0880042991.01.T01:three_prime_UTR 25.0%
!!! TTTTGAAATCATTGTACACA+TGG + Chr8:17255052-17255071 MsG0880042991.01.T01:intron 25.0%
AAAAAGAACAGAAAGTCTTG+GGG + Chr8:17253526-17253545 MsG0880042991.01.T01:intron 30.0%
AAAAAGAACTGATGGAACAA+TGG - Chr8:17253849-17253868 None:intergenic 30.0%
AAAAATCTCACATTCATGCA+TGG + Chr8:17258545-17258564 MsG0880042991.01.T01:intron 30.0%
AAAATGCAGTTACCAAACAT+AGG + Chr8:17259200-17259219 MsG0880042991.01.T01:intron 30.0%
AAACCACATCCAATTAAAGA+GGG + Chr8:17256401-17256420 MsG0880042991.01.T01:intron 30.0%
AAATAGAGAACAATGAGAAG+AGG - Chr8:17253436-17253455 None:intergenic 30.0%
AAATAGAGATGGAAAGTCAA+AGG - Chr8:17255467-17255486 None:intergenic 30.0%
AAATGCATGTATAGAATCTC+AGG + Chr8:17261529-17261548 MsG0880042991.01.T01:intron 30.0%
AAGAGAGGAATCAGATAAAT+TGG - Chr8:17259797-17259816 None:intergenic 30.0%
AATAGAGATGGAAAGTCAAA+GGG - Chr8:17255466-17255485 None:intergenic 30.0%
ACATTTCATAGTGATTTCAG+CGG - Chr8:17255553-17255572 None:intergenic 30.0%
AGAAAGAGAGACAAAAAGAA+AGG + Chr8:17259677-17259696 MsG0880042991.01.T01:intron 30.0%
AGAAATATTTCAATGCATCG+AGG - Chr8:17254213-17254232 None:intergenic 30.0%
AGGAATCAGATAAATTGGAT+GGG - Chr8:17259792-17259811 None:intergenic 30.0%
ATACCTATGTATATAAGGAC+AGG - Chr8:17260856-17260875 None:intergenic 30.0%
ATCCTATCAATAAACAACAC+TGG + Chr8:17258768-17258787 MsG0880042991.01.T01:intron 30.0%
ATGAAGATGGAAAGTTAAAG+GGG - Chr8:17254270-17254289 None:intergenic 30.0%
ATGATACATGTCTTTACAAG+TGG - Chr8:17254338-17254357 None:intergenic 30.0%
ATGGAGGAAAAAAAAGGAAA+AGG - Chr8:17258466-17258485 None:intergenic 30.0%
ATGGATGCAAATTGCAATTT+GGG - Chr8:17257845-17257864 None:intergenic 30.0%
ATTGCAATTGTGAAATGGAA+CGG - Chr8:17259820-17259839 None:intergenic 30.0%
CAAAACACTTTGGATGATAT+AGG + Chr8:17254407-17254426 MsG0880042991.01.T01:intron 30.0%
CAAATATGATGTTTCTCTTC+TGG - Chr8:17254463-17254482 None:intergenic 30.0%
CAATTCAAGATTGTGTTATC+TGG + Chr8:17253619-17253638 MsG0880042991.01.T01:intron 30.0%
CATAACAGTTTGGATGATAT+AGG + Chr8:17255609-17255628 MsG0880042991.01.T01:intron 30.0%
CATCACACATGTTATATTCA+AGG - Chr8:17258698-17258717 None:intergenic 30.0%
CCAAACAAAGTCAAAATGTT+AGG + Chr8:17259271-17259290 MsG0880042991.01.T01:intron 30.0%
GAAGAAATACAAGGAAAAGA+TGG + Chr8:17259027-17259046 MsG0880042991.01.T01:intron 30.0%
GAAGTTAAGCATGTTGTATT+TGG - Chr8:17256841-17256860 None:intergenic 30.0%
GAGACAAAACTATTATGTTG+TGG + Chr8:17258717-17258736 MsG0880042991.01.T01:intron 30.0%
GAGGAAATCGATTAAAATGT+CGG - Chr8:17259911-17259930 None:intergenic 30.0%
GATCATGTTTATGAACTGTA+TGG + Chr8:17253300-17253319 MsG0880042991.01.T01:CDS 30.0%
GTAAAAAGAACAGAAAGTCT+TGG + Chr8:17253524-17253543 MsG0880042991.01.T01:intron 30.0%
GTAGGGATAACAAAAATCAA+TGG - Chr8:17256642-17256661 None:intergenic 30.0%
GTGAAATTGCAATTGTGAAA+TGG - Chr8:17259825-17259844 None:intergenic 30.0%
GTTCATGGGATTAATAAAGA+AGG - Chr8:17256895-17256914 None:intergenic 30.0%
TAAACCACATCCAATTAAAG+AGG + Chr8:17256400-17256419 MsG0880042991.01.T01:intron 30.0%
TAACTTCAGACAAAACACTT+TGG + Chr8:17254397-17254416 MsG0880042991.01.T01:intron 30.0%
TAACTTCAGACATAACAGTT+TGG + Chr8:17255599-17255618 MsG0880042991.01.T01:intron 30.0%
TAGAACAACAACATATATGG+AGG - Chr8:17258482-17258501 None:intergenic 30.0%
TATTCGGTTGAACAAATCAA+AGG + Chr8:17258594-17258613 MsG0880042991.01.T01:intron 30.0%
TATTTGATTCAAAAGCAAGG+AGG + Chr8:17259504-17259523 MsG0880042991.01.T01:intron 30.0%
TCAAATGTGTAACCTCATTA+GGG - Chr8:17260565-17260584 None:intergenic 30.0%
TCTCTCTTTCTCTTATCTTT+GGG - Chr8:17259668-17259687 None:intergenic 30.0%
TGAAATTACACTCTTCAGTT+GGG + Chr8:17261153-17261172 MsG0880042991.01.T01:intron 30.0%
TGGCAATACCTATGTATATA+AGG - Chr8:17260861-17260880 None:intergenic 30.0%
TGGTGTATGAAATTTGGTTA+TGG + Chr8:17260043-17260062 MsG0880042991.01.T01:intron 30.0%
TGTACAATGGAAGTTACAAT+TGG - Chr8:17256544-17256563 None:intergenic 30.0%
TTAAATTAACCCACCCAAAT+TGG - Chr8:17259383-17259402 None:intergenic 30.0%
TTCATACACCAACTATTGTA+GGG - Chr8:17260034-17260053 None:intergenic 30.0%
TTGGATGTGGTTTAAATGAA+TGG - Chr8:17256394-17256413 None:intergenic 30.0%
TTTCATACACCAACTATTGT+AGG - Chr8:17260035-17260054 None:intergenic 30.0%
! ACCAAACATAGGATTTTTGT+CGG + Chr8:17259211-17259230 MsG0880042991.01.T01:intron 30.0%
! CAGTATACGATGTGTTTTAT+TGG + Chr8:17260585-17260604 MsG0880042991.01.T01:intron 30.0%
! GACAATAGAGTGTTTATTGA+CGG - Chr8:17256494-17256513 None:intergenic 30.0%
! GTTTGTTGGACTAATAAAGA+AGG - Chr8:17254437-17254456 None:intergenic 30.0%
! TAGACGAAAGTCAAACATTT+TGG - Chr8:17258523-17258542 None:intergenic 30.0%
! TCAAGACTTCTTTTTATGCT+CGG + Chr8:17258837-17258856 MsG0880042991.01.T01:intron 30.0%
!! ACAGTTTTCATTTTTCTGGT+TGG + Chr8:17261339-17261358 MsG0880042991.01.T01:intron 30.0%
!! CTACTCTAAAACCATAGTAA+TGG + Chr8:17260221-17260240 MsG0880042991.01.T01:intron 30.0%
!! CTGATTTGGATTCAAAGATA+AGG - Chr8:17253899-17253918 None:intergenic 30.0%
!! GAAGTTAAGCTTGTTGTATT+TGG - Chr8:17254384-17254403 None:intergenic 30.0%
!! GACATTTTAATCGATTTCCT+CGG + Chr8:17259910-17259929 MsG0880042991.01.T01:intron 30.0%
!! GATTTCAAGTTGTAGGATAA+TGG + Chr8:17253204-17253223 MsG0880042991.01.T01:intron 30.0%
!! TGAGTTTTATATTTTGGGTG+TGG + Chr8:17258084-17258103 MsG0880042991.01.T01:intron 30.0%
!! TGGGCTATTTTGAACTTTTA+GGG - Chr8:17257778-17257797 None:intergenic 30.0%
!! TTCCAGTGTTGTTTATTGAT+AGG - Chr8:17258773-17258792 None:intergenic 30.0%
!! TTGGGCTATTTTGAACTTTT+AGG - Chr8:17257779-17257798 None:intergenic 30.0%
!! TTTCAAGTTGTAGGATAATG+GGG + Chr8:17253206-17253225 MsG0880042991.01.T01:intron 30.0%
!!! AGCATTTTAATTCATCGAGT+AGG - Chr8:17256660-17256679 None:intergenic 30.0%
!!! CCTAACATTTTGACTTTGTT+TGG - Chr8:17259274-17259293 None:intergenic 30.0%
!!! CTGCTCTTTTGACTTATTTA+TGG - Chr8:17258900-17258919 None:intergenic 30.0%
!!! GCATTTTAATTCATCGAGTA+GGG - Chr8:17256659-17256678 None:intergenic 30.0%
!!! GTTTTTTAATGTTGACTGCT+TGG + Chr8:17261221-17261240 MsG0880042991.01.T01:intron 30.0%
!!! TGCCCATTTCTTTTAAGATA+AGG + Chr8:17260247-17260266 MsG0880042991.01.T01:intron 30.0%
!!! TTTTGAAATCATTGCACACA+TGG + Chr8:17253865-17253884 MsG0880042991.01.T01:intron 30.0%
AAAAGAACAGAAAGTCTTGG+GGG + Chr8:17253527-17253546 MsG0880042991.01.T01:intron 35.0%
AAAATGTTAGGAACCCACTT+GGG + Chr8:17259283-17259302 MsG0880042991.01.T01:intron 35.0%
AACCACATCCAATTAAAGAG+GGG + Chr8:17256402-17256421 MsG0880042991.01.T01:intron 35.0%
AAGAGAAAGGAAGAAAGGTA+GGG + Chr8:17257694-17257713 MsG0880042991.01.T01:intron 35.0%
AAGCATTAATGCATCAAGGA+AGG - Chr8:17255406-17255425 None:intergenic 35.0%
AAGGCAGAACAAATATGACA+AGG - Chr8:17253783-17253802 None:intergenic 35.0%
AATATTTCAATGCATCGAGG+AGG - Chr8:17254210-17254229 None:intergenic 35.0%
AATGAGAAATGTGAAGTGGA+TGG - Chr8:17257864-17257883 None:intergenic 35.0%
AATTAAAAAAGGGCGGTGAT+CGG + Chr8:17255152-17255171 MsG0880042991.01.T01:intron 35.0%
AATTATCAACTACAGAGTCG+TGG + Chr8:17253556-17253575 MsG0880042991.01.T01:intron 35.0%
ACATTCCATAGTGATTTCAG+CGG - Chr8:17256808-17256827 None:intergenic 35.0%
ACTTCATAAACCTTGCATGA+AGG + Chr8:17253273-17253292 MsG0880042991.01.T01:CDS 35.0%
ATAAGATACTCGGTCGTTAT+AGG + Chr8:17260289-17260308 MsG0880042991.01.T01:intron 35.0%
ATAGAGATGGAAAGTCAAAG+GGG - Chr8:17255465-17255484 None:intergenic 35.0%
ATATTTCAATGCATCGAGGA+GGG - Chr8:17254209-17254228 None:intergenic 35.0%
ATCTGCAACAAACATCAATC+AGG + Chr8:17255681-17255700 MsG0880042991.01.T01:intron 35.0%
ATGATCATTTCCTTCATGCA+AGG - Chr8:17253286-17253305 None:intergenic 35.0%
CACATCCAATTAAAAAAGGG+CGG + Chr8:17255145-17255164 MsG0880042991.01.T01:intron 35.0%
CACGATGCAATAAATTACAC+AGG - Chr8:17254065-17254084 None:intergenic 35.0%
CATGCAATTGATCTGTACAA+TGG - Chr8:17256557-17256576 None:intergenic 35.0%
CCATCACTAAAAACATGTCT+TGG - Chr8:17258949-17258968 None:intergenic 35.0%
CTGAAATTACACTCTTCAGT+TGG + Chr8:17261152-17261171 MsG0880042991.01.T01:intron 35.0%
CTTTAAATAGGCCAACTCTA+TGG - Chr8:17261112-17261131 None:intergenic 35.0%
GAAATGAGAAGAGAAGCAAA+GGG - Chr8:17257960-17257979 None:intergenic 35.0%
GAAGTTAAGCCTGTTGTATT+TGG - Chr8:17255586-17255605 None:intergenic 35.0%
GAGAGACAAAAAGAAAGGTA+AGG + Chr8:17259682-17259701 MsG0880042991.01.T01:intron 35.0%
GAGGAATCAGATAAATTGGA+TGG - Chr8:17259793-17259812 None:intergenic 35.0%
GAGTACATGACATGAAAACT+AGG + Chr8:17253465-17253484 MsG0880042991.01.T01:intron 35.0%
GATCAATGAGAAATGTGAAG+TGG - Chr8:17257868-17257887 None:intergenic 35.0%
GATGCAATTGAATTGTGCAA+TGG - Chr8:17255298-17255317 None:intergenic 35.0%
GATGGATGCAAATTGCAATT+TGG - Chr8:17257846-17257865 None:intergenic 35.0%
GATTCGGAAACAAATGAAGA+TGG - Chr8:17254283-17254302 None:intergenic 35.0%
GGAGGGATAACAAAAATTGA+TGG - Chr8:17254192-17254211 None:intergenic 35.0%
GGGATTTATTGATCTAATGG+TGG + Chr8:17261043-17261062 MsG0880042991.01.T01:intron 35.0%
GGTGGGATTTATTGATCTAA+TGG + Chr8:17261040-17261059 MsG0880042991.01.T01:intron 35.0%
GGTGTAGGAAAAAATAGAGA+TGG + Chr8:17257715-17257734 MsG0880042991.01.T01:intron 35.0%
GTATCAATTATCAACTGCAG+AGG + Chr8:17261717-17261736 MsG0880042991.01.T01:CDS 35.0%
GTCAAATGTGTAACCTCATT+AGG - Chr8:17260566-17260585 None:intergenic 35.0%
GTCTCTCTTTCTCTTATCTT+TGG - Chr8:17259669-17259688 None:intergenic 35.0%
GTTCGTGGGAATAATAAAGA+AGG - Chr8:17255640-17255659 None:intergenic 35.0%
TAAGAGAAAGGAAGAAAGGT+AGG + Chr8:17257693-17257712 MsG0880042991.01.T01:intron 35.0%
TACATGCCAATATGGATTCA+CGG - Chr8:17260358-17260377 None:intergenic 35.0%
TATTGCATCGTGAGAATACT+AGG + Chr8:17254073-17254092 MsG0880042991.01.T01:intron 35.0%
TCAATCAAGCCAAATACAAC+AGG + Chr8:17255574-17255593 MsG0880042991.01.T01:intron 35.0%
TCATTTGTGTACCATAGAGT+TGG + Chr8:17261098-17261117 MsG0880042991.01.T01:intron 35.0%
TCCGACAAAAATCCTATGTT+TGG - Chr8:17259215-17259234 None:intergenic 35.0%
TGAAATGAGAAGAGAAGCAA+AGG - Chr8:17257961-17257980 None:intergenic 35.0%
TGATGTTAGTTGCAGATATG+AGG - Chr8:17256933-17256952 None:intergenic 35.0%
TGTGCATATGATTTCCAACT+TGG + Chr8:17260914-17260933 MsG0880042991.01.T01:intron 35.0%
TGTGTACATGTATCACTGTT+TGG + Chr8:17260795-17260814 MsG0880042991.01.T01:intron 35.0%
TGTTAGATCCCTACAATAGT+TGG + Chr8:17260023-17260042 MsG0880042991.01.T01:intron 35.0%
! ATTTTCATCTGAGCATGTTG+AGG - Chr8:17254953-17254972 None:intergenic 35.0%
! ATTTTCATCTGAGCATGTTG+GGG - Chr8:17254953-17254972 None:intergenic 35.0%
! CAACTGAAGAGTGTAATTTC+AGG - Chr8:17261154-17261173 None:intergenic 35.0%
! CAGATAAATTGGATGGGTTT+GGG - Chr8:17259786-17259805 None:intergenic 35.0%
! GATTTTCATCTGAGCATGTT+GGG - Chr8:17254954-17254973 None:intergenic 35.0%
! GTATCACTGTTTGGTGAATT+TGG + Chr8:17260804-17260823 MsG0880042991.01.T01:intron 35.0%
! TAACTTCAGACAAAGCACTT+TGG + Chr8:17256854-17256873 MsG0880042991.01.T01:intron 35.0%
! TCAGATAAATTGGATGGGTT+TGG - Chr8:17259787-17259806 None:intergenic 35.0%
! TGATGTTTGTTGCAGATGTT+AGG - Chr8:17255678-17255697 None:intergenic 35.0%
! TGGGTCATTTCGAAGTTTTA+GGG - Chr8:17259767-17259786 None:intergenic 35.0%
! TTGGGTCATTTCGAAGTTTT+AGG - Chr8:17259768-17259787 None:intergenic 35.0%
! TTTTATCTCTCGTAGATGAG+AGG - Chr8:17257672-17257691 None:intergenic 35.0%
!! ACAGCTTTCATTTTTCTGGT+TGG + Chr8:17253182-17253201 MsG0880042991.01.T01:five_prime_UTR 35.0%
!! ACGATGTGTTTTATTGGGTT+TGG + Chr8:17260591-17260610 MsG0880042991.01.T01:intron 35.0%
!! CAAGAAGCATTAATGCATCA+AGG - Chr8:17255410-17255429 None:intergenic 35.0%
!! TTCTCTTCTGGAATGTTCAT+GGG - Chr8:17256909-17256928 None:intergenic 35.0%
!! TTCTCTTCTGGAATGTTTGT+TGG - Chr8:17254451-17254470 None:intergenic 35.0%
!! TTTCTCTTCTGGAATGTTCA+TGG - Chr8:17256910-17256929 None:intergenic 35.0%
!!! CCAAGACATGTTTTTAGTGA+TGG + Chr8:17258946-17258965 MsG0880042991.01.T01:intron 35.0%
!!! GTTTTGGGAACAAATAGAGA+TGG - Chr8:17255478-17255497 None:intergenic 35.0%
!!! TGAGTGGTGGATTTTGTTTA+TGG - Chr8:17254243-17254262 None:intergenic 35.0%
!!! TTTTTTGATTCCATGTGCAC+TGG + Chr8:17261191-17261210 MsG0880042991.01.T01:intron 35.0%
AAAACGCTCTCAATGGTTGA+AGG - Chr8:17254976-17254995 None:intergenic 40.0%
AAGATATGCATACGCCAAGT+TGG - Chr8:17260931-17260950 None:intergenic 40.0%
AAGATGGAAAGTTAAAGGGG+AGG - Chr8:17254267-17254286 None:intergenic 40.0%
AATCGATTAAAATGTCGGCG+TGG - Chr8:17259906-17259925 None:intergenic 40.0%
AATGGAGATGGAAAGCCAAA+TGG - Chr8:17256721-17256740 None:intergenic 40.0%
AATGGGCATCTCCATTACTA+TGG - Chr8:17260235-17260254 None:intergenic 40.0%
AATGTGTAACCTCATTAGGG+AGG - Chr8:17260562-17260581 None:intergenic 40.0%
AATTAAAGAGGGGCGATGAT+CGG + Chr8:17256412-17256431 MsG0880042991.01.T01:intron 40.0%
AATTGGGAAAACGCTCTCAA+TGG - Chr8:17254983-17255002 None:intergenic 40.0%
AATTTGGGAGACAAACGAAG+CGG - Chr8:17257830-17257849 None:intergenic 40.0%
ACATGCCAATATGGATTCAC+GGG - Chr8:17260357-17260376 None:intergenic 40.0%
ACGACCGAGTATCTTATAAC+CGG - Chr8:17260286-17260305 None:intergenic 40.0%
AGAAAAACAAAGTGGGTGGA+TGG - Chr8:17257804-17257823 None:intergenic 40.0%
AGAAAATCATGAGAAGAGGG+AGG - Chr8:17261598-17261617 None:intergenic 40.0%
AGAAATGCACAACTAGCAAC+TGG - Chr8:17255325-17255344 None:intergenic 40.0%
AGAGAACAATGAGAAGAGGA+AGG - Chr8:17253432-17253451 None:intergenic 40.0%
AGCGGAAGAGAAAAACAAAG+TGG - Chr8:17257812-17257831 None:intergenic 40.0%
ATGAAAGAGACGTGATGCAA+GGG - Chr8:17254166-17254185 None:intergenic 40.0%
ATGGAGATGGAAAGCCAAAT+GGG - Chr8:17256720-17256739 None:intergenic 40.0%
ATGTACCGCTGAAATCACTA+TGG + Chr8:17255545-17255564 MsG0880042991.01.T01:intron 40.0%
ATGTGTAACCTCATTAGGGA+GGG - Chr8:17260561-17260580 None:intergenic 40.0%
ATTCTCTCCGATGCCAATTT+GGG + Chr8:17259367-17259386 MsG0880042991.01.T01:intron 40.0%
CAAAATGTTAGGAACCCACT+TGG + Chr8:17259282-17259301 MsG0880042991.01.T01:intron 40.0%
CAATTAAAAAGGGCGGTGAT+CGG + Chr8:17253964-17253983 MsG0880042991.01.T01:intron 40.0%
CAGATATGAGGTTTCTCTTC+TGG - Chr8:17256921-17256940 None:intergenic 40.0%
CAGATGTTAGGTTTCTCTTC+TGG - Chr8:17255666-17255685 None:intergenic 40.0%
CATACAAGACAAGACCAAGT+TGG - Chr8:17260831-17260850 None:intergenic 40.0%
CATCAAACTACTTCCTTCCA+CGG - Chr8:17253576-17253595 None:intergenic 40.0%
CCACATCCAATTAAAAAGGG+CGG + Chr8:17253957-17253976 MsG0880042991.01.T01:intron 40.0%
CCATAGCATACATGCCAATA+TGG - Chr8:17260366-17260385 None:intergenic 40.0%
CCATATTGGCATGTATGCTA+TGG + Chr8:17260363-17260382 MsG0880042991.01.T01:intron 40.0%
CTACCCGGTTATAAGATACT+CGG + Chr8:17260279-17260298 MsG0880042991.01.T01:intron 40.0%
GAAAAACAAAGTGGGTGGAT+GGG - Chr8:17257803-17257822 None:intergenic 40.0%
GAAAATCATGAGAAGAGGGA+GGG - Chr8:17261597-17261616 None:intergenic 40.0%
GAAGAGAAAAACAAAGTGGG+TGG - Chr8:17257808-17257827 None:intergenic 40.0%
GAGAACAATGAGAAGAGGAA+GGG - Chr8:17253431-17253450 None:intergenic 40.0%
GAGTGTTTATTGACGGTGAA+TGG - Chr8:17256487-17256506 None:intergenic 40.0%
GCGGAAGAGAAAAACAAAGT+GGG - Chr8:17257811-17257830 None:intergenic 40.0%
GGAAAAAATAGAGATGGCGT+AGG + Chr8:17257721-17257740 MsG0880042991.01.T01:intron 40.0%
GGACCTGTCCTTATATACAT+AGG + Chr8:17260850-17260869 MsG0880042991.01.T01:intron 40.0%
GGAGGATGCAAATATGTAAG+TGG - Chr8:17256286-17256305 None:intergenic 40.0%
GGTGCGAGTAAAAATTGAGA+CGG + Chr8:17259703-17259722 MsG0880042991.01.T01:intron 40.0%
TGAAGCATGTGCTAAGCATA+AGG + Chr8:17253342-17253361 MsG0880042991.01.T01:CDS 40.0%
TGAGACGGTGTAGATAGTTT+GGG + Chr8:17259718-17259737 MsG0880042991.01.T01:intron 40.0%
TTGAGACGGTGTAGATAGTT+TGG + Chr8:17259717-17259736 MsG0880042991.01.T01:intron 40.0%
TTGGCATGTATGCTATGGAT+CGG + Chr8:17260368-17260387 MsG0880042991.01.T01:intron 40.0%
TTGGTGAATTTGGACCAACT+TGG + Chr8:17260814-17260833 MsG0880042991.01.T01:intron 40.0%
! ATTCAAGTTTCGGGGACAAA+TGG - Chr8:17256739-17256758 None:intergenic 40.0%
! GACAACAGAGTGTTTGTTGA+TGG - Chr8:17255234-17255253 None:intergenic 40.0%
! GGATTTTCATCTGAGCATGT+TGG - Chr8:17254955-17254974 None:intergenic 40.0%
!! AATTGAGAAGGCACTCTCAA+TGG - Chr8:17256243-17256262 None:intergenic 40.0%
!! AGTTGGAAAGGTATTGCCAT+GGG + Chr8:17260312-17260331 MsG0880042991.01.T01:intron 40.0%
!! ATGGTGGACTTTGTTTATGC+TGG - Chr8:17256690-17256709 None:intergenic 40.0%
!! CAACTTGGTCTTGTCTTGTA+TGG + Chr8:17260829-17260848 MsG0880042991.01.T01:intron 40.0%
!! CATGCGATTGATTTGTGCAA+TGG - Chr8:17254108-17254127 None:intergenic 40.0%
!! CTGGTTGGATTTCAAGTTGT+AGG + Chr8:17253197-17253216 MsG0880042991.01.T01:five_prime_UTR 40.0%
!! GTTTGTTGATGGTGAATGAC+TGG - Chr8:17255223-17255242 None:intergenic 40.0%
!! TTCTCTTCTGGAATGTTCGT+GGG - Chr8:17255654-17255673 None:intergenic 40.0%
!! TTTCTCTTCTGGAATGTTCG+TGG - Chr8:17255655-17255674 None:intergenic 40.0%
!!! CAGGCAACAGTGTTTTTTGA+CGG - Chr8:17254046-17254065 None:intergenic 40.0%
!!! CGCCCTTTTTTAATTGGATG+TGG - Chr8:17255147-17255166 None:intergenic 40.0%
!!! GATCACCGCCCTTTTTTAAT+TGG - Chr8:17255153-17255172 None:intergenic 40.0%
!!! GTGGTGGATTTTGTTTATGG+TGG - Chr8:17254240-17254259 None:intergenic 40.0%
AACACTAATGCCAGTGCACA+TGG - Chr8:17261204-17261223 None:intergenic 45.0%
AAGCCAAATGGGAGGTTGAA+TGG - Chr8:17256709-17256728 None:intergenic 45.0%
AAGGAAGAAAGGTAGGGTGT+AGG + Chr8:17257700-17257719 MsG0880042991.01.T01:intron 45.0%
AAGTTAAAGGGGAGGTTGAG+TGG - Chr8:17254259-17254278 None:intergenic 45.0%
ACATATCCTTTACTCCCGAG+AGG - Chr8:17260111-17260130 None:intergenic 45.0%
AGAGATGGCGTAGGTAGATT+TGG + Chr8:17257730-17257749 MsG0880042991.01.T01:intron 45.0%
ATAAGGAGAGGATCTCTACC+CGG + Chr8:17260264-17260283 MsG0880042991.01.T01:intron 45.0%
ATCAACTACAGAGTCGTGGA+AGG + Chr8:17253560-17253579 MsG0880042991.01.T01:intron 45.0%
CACATGCTTCAACATCACTG+TGG - Chr8:17261490-17261509 None:intergenic 45.0%
CACATGCTTCAACATCGCTA+TGG - Chr8:17253333-17253352 None:intergenic 45.0%
CATATCCTTTACTCCCGAGA+GGG - Chr8:17260110-17260129 None:intergenic 45.0%
CATGAAAGAGACGTGATGCA+AGG - Chr8:17254167-17254186 None:intergenic 45.0%
CGACCGAGTATCTTATAACC+GGG - Chr8:17260285-17260304 None:intergenic 45.0%
GATCATCGCCCCTCTTTAAT+TGG - Chr8:17256413-17256432 None:intergenic 45.0%
GATTCTCTCCGATGCCAATT+TGG + Chr8:17259366-17259385 MsG0880042991.01.T01:intron 45.0%
GGTCGTTATAGGAGTTGGAA+AGG + Chr8:17260300-17260319 MsG0880042991.01.T01:intron 45.0%
GTGAAAGAGACGTGATGCAA+GGG - Chr8:17255363-17255382 None:intergenic 45.0%
TAACCCACCCAAATTGGCAT+CGG - Chr8:17259377-17259396 None:intergenic 45.0%
TACTCGGTCGTTATAGGAGT+TGG + Chr8:17260295-17260314 MsG0880042991.01.T01:intron 45.0%
TGAAAGAGACGTGATGCAAG+GGG - Chr8:17254165-17254184 None:intergenic 45.0%
TGAAGCATGTGCTAAGCAGA+AGG + Chr8:17261499-17261518 MsG0880042991.01.T01:intron 45.0%
TGCACAACTAGCAACTGGTA+AGG - Chr8:17255320-17255339 None:intergenic 45.0%
TGCCATGGGTGTAGAAAACT+CGG + Chr8:17260326-17260345 MsG0880042991.01.T01:intron 45.0%
TGGCATGTATGCTATGGATC+GGG + Chr8:17260369-17260388 MsG0880042991.01.T01:intron 45.0%
TGTGAAAGAGACGTGATGCA+AGG - Chr8:17255364-17255383 None:intergenic 45.0%
TGTGAAATGGAACGGAAGAG+AGG - Chr8:17259812-17259831 None:intergenic 45.0%
TGTGTCCCGTGAATCCATAT+TGG + Chr8:17260349-17260368 MsG0880042991.01.T01:intron 45.0%
TGTTACCGCAAAGAGTGAAG+TGG - Chr8:17257928-17257947 None:intergenic 45.0%
TTAAAATGTCGGCGTGGATG+AGG - Chr8:17259900-17259919 None:intergenic 45.0%
TTGTAGCTGCACAGACTACT+GGG - Chr8:17260505-17260524 None:intergenic 45.0%
TTTCCTCGGTTCTCTCTTTG+CGG + Chr8:17259924-17259943 MsG0880042991.01.T01:intron 45.0%
! CGATCACCGCCCTTTTTAAT+TGG - Chr8:17253966-17253985 None:intergenic 45.0%
!! CAAGTTGTAGGATAATGGGG+CGG + Chr8:17253209-17253228 MsG0880042991.01.T01:intron 45.0%
!! CCGCCCTTTTTAATTGGATG+TGG - Chr8:17253960-17253979 None:intergenic 45.0%
!! GAGTTGGAAAGGTATTGCCA+TGG + Chr8:17260311-17260330 MsG0880042991.01.T01:intron 45.0%
!! GCGGTACATGCATTTTCAAG+TGG - Chr8:17255534-17255553 None:intergenic 45.0%
!! TGACAAAAGAGTGTCCAACG+AGG + Chr8:17260420-17260439 MsG0880042991.01.T01:intron 45.0%
!! AAAAAAATATATAAAATTTG+TGG + Chr8:17258396-17258415 MsG0880042991.01.T01:intron 5.0%
!!! AAAATCTATTTTTTTTTTAA+AGG + Chr8:17259631-17259650 MsG0880042991.01.T01:intron 5.0%
!!! ATAAAAAATAAATTTTTGAT+CGG - Chr8:17257017-17257036 None:intergenic 5.0%
!!! TATAATAAATTTTATTTTTG+TGG - Chr8:17258323-17258342 None:intergenic 5.0%
AAGTCAAAGGGGAGGTTGAG+TGG - Chr8:17255454-17255473 None:intergenic 50.0%
ACCTGAACGGAGAGTAAAGC+CGG - Chr8:17259866-17259885 None:intergenic 50.0%
CATTTCTTACCGATCCTCGC+CGG + Chr8:17259844-17259863 MsG0880042991.01.T01:intron 50.0%
CCAAATGGGAGGTTGAATGG+TGG - Chr8:17256706-17256725 None:intergenic 50.0%
CCACCATTCAACCTCCCATT+TGG + Chr8:17256703-17256722 MsG0880042991.01.T01:intron 50.0%
CCTTTGCATGGTAACCCTCT+CGG + Chr8:17260093-17260112 MsG0880042991.01.T01:intron 50.0%
CGCCCCTCTTTAATTGGATG+TGG - Chr8:17256407-17256426 None:intergenic 50.0%
CGTGAAAGAGACGTGATGCA+AGG - Chr8:17256617-17256636 None:intergenic 50.0%
CTTGTAGCTGCACAGACTAC+TGG - Chr8:17260506-17260525 None:intergenic 50.0%
CTTTGCATGGTAACCCTCTC+GGG + Chr8:17260094-17260113 MsG0880042991.01.T01:intron 50.0%
GAGATGGAAAGCCAAATGGG+AGG - Chr8:17256717-17256736 None:intergenic 50.0%
GAGATGGAAAGTCAAAGGGG+AGG - Chr8:17255462-17255481 None:intergenic 50.0%
GTTTCGGGGACAAATGGAGA+TGG - Chr8:17256733-17256752 None:intergenic 50.0%
TACCGCAAAGAGTGAAGTGG+CGG - Chr8:17257925-17257944 None:intergenic 50.0%
TCTCCGATGCCAATTTGGGT+GGG + Chr8:17259371-17259390 MsG0880042991.01.T01:intron 50.0%
TTAAAGGGGAGGTTGAGTGG+TGG - Chr8:17254256-17254275 None:intergenic 50.0%
TTACCGCAAAGAGAGAACCG+AGG - Chr8:17259930-17259949 None:intergenic 50.0%
! AAGGCACTCTCAATGGTCGA+AGG - Chr8:17256236-17256255 None:intergenic 50.0%
! ACAAAGTGGGTGGATGGGTT+TGG - Chr8:17257798-17257817 None:intergenic 50.0%
! ACGTGATGCAAGGGGTATGA+AGG - Chr8:17254157-17254176 None:intergenic 50.0%
! CAAAGTGGGTGGATGGGTTT+GGG - Chr8:17257797-17257816 None:intergenic 50.0%
! CACCGAGTTTTCTACACCCA+TGG - Chr8:17260331-17260350 None:intergenic 50.0%
! GATCGGACGTTGATAGATCG+AGG + Chr8:17256429-17256448 MsG0880042991.01.T01:intron 50.0%
!! GTGGCATTGACTTGGGATCT+GGG + Chr8:17259314-17259333 MsG0880042991.01.T01:intron 50.0%
!! TGACCTGGTGGCATTGACTT+GGG + Chr8:17259307-17259326 MsG0880042991.01.T01:intron 50.0%
!! TTGACCTGGTGGCATTGACT+TGG + Chr8:17259306-17259325 MsG0880042991.01.T01:intron 50.0%
AGAGTAAAGCCGGCGAGGAT+CGG - Chr8:17259856-17259875 None:intergenic 55.0%
AGGCAACGTCTTGGGTCGAT+GGG + Chr8:17260440-17260459 MsG0880042991.01.T01:intron 55.0%
CCGAGAGGGTTACCATGCAA+AGG - Chr8:17260096-17260115 None:intergenic 55.0%
CGTCGACGTATTCTCCGTTC+AGG + Chr8:17257890-17257909 MsG0880042991.01.T01:intron 55.0%
CTCAGACTCCCTCCCTAATG+AGG + Chr8:17260550-17260569 MsG0880042991.01.T01:intron 55.0%
CTCTCCGATGCCAATTTGGG+TGG + Chr8:17259370-17259389 MsG0880042991.01.T01:intron 55.0%
GAATCGAACCTGAGACGTCG+AGG - Chr8:17259351-17259370 None:intergenic 55.0%
GATCCCAAGTCAATGCCACC+AGG - Chr8:17259313-17259332 None:intergenic 55.0%
GATCGGACGTTGATCGATCG+AGG + Chr8:17253981-17254000 MsG0880042991.01.T01:intron 55.0%
GGTAACCCTCTCGGGAGTAA+AGG + Chr8:17260102-17260121 MsG0880042991.01.T01:intron 55.0%
GGTTCAGACGGTGACCTGAA+CGG - Chr8:17259879-17259898 None:intergenic 55.0%
GTCCAACGAGGCAACGTCTT+GGG + Chr8:17260432-17260451 MsG0880042991.01.T01:intron 55.0%
TCAAAGGGGAGGTTGAGTGG+TGG - Chr8:17255451-17255470 None:intergenic 55.0%
TGTCCAACGAGGCAACGTCT+TGG + Chr8:17260431-17260450 MsG0880042991.01.T01:intron 55.0%
! ACCGAGTCTGGGTTGACATG+CGG + Chr8:17260470-17260489 MsG0880042991.01.T01:intron 55.0%
! ATAATGGGGCGGAAAGCTGG+CGG + Chr8:17253220-17253239 MsG0880042991.01.T01:intron 55.0%
!! AGGATAATGGGGCGGAAAGC+TGG + Chr8:17253217-17253236 MsG0880042991.01.T01:intron 55.0%
!! GGTGGCATTGACTTGGGATC+TGG + Chr8:17259313-17259332 MsG0880042991.01.T01:intron 55.0%
AAAGAGTGAAGTGGCGGCGC+TGG - Chr8:17257919-17257938 None:intergenic 60.0%
AACGGAGAGTAAAGCCGGCG+AGG - Chr8:17259861-17259880 None:intergenic 60.0%
CAACGTCTTGGGTCGATGGG+AGG + Chr8:17260443-17260462 MsG0880042991.01.T01:intron 60.0%
CAACTGCAGAGGCTTAGCCG+TGG + Chr8:17261728-17261747 MsG0880042991.01.T01:CDS 60.0%
CCCGCATGTCAACCCAGACT+CGG - Chr8:17260474-17260493 None:intergenic 60.0%
CGCCGCCACTTCACTCTTTG+CGG + Chr8:17257920-17257939 MsG0880042991.01.T01:intron 60.0%
CGGCGTGGATGAGGTTCAGA+CGG - Chr8:17259891-17259910 None:intergenic 60.0%
GACCCAAGACGTTGCCTCGT+TGG - Chr8:17260437-17260456 None:intergenic 60.0%
GAGGCAACGTCTTGGGTCGA+TGG + Chr8:17260439-17260458 MsG0880042991.01.T01:intron 60.0%
GCCACCAGGTCAACCCAAGT+GGG - Chr8:17259299-17259318 None:intergenic 60.0%
GTCTTGGGTCGATGGGAGGA+GGG + Chr8:17260447-17260466 MsG0880042991.01.T01:intron 60.0%
TAATGGGGCGGAAAGCTGGC+GGG + Chr8:17253221-17253240 MsG0880042991.01.T01:intron 60.0%
TCGAACCTGAGACGTCGAGG+AGG - Chr8:17259348-17259367 None:intergenic 60.0%
TGCAGAGGCTTAGCCGTGGA+AGG + Chr8:17261732-17261751 MsG0880042991.01.T01:CDS 60.0%
TGCCACCAGGTCAACCCAAG+TGG - Chr8:17259300-17259319 None:intergenic 60.0%
! CCGAGTCTGGGTTGACATGC+GGG + Chr8:17260471-17260490 MsG0880042991.01.T01:intron 60.0%
! GCCGGCTTTACTCTCCGTTC+AGG + Chr8:17259862-17259881 MsG0880042991.01.T01:intron 60.0%
!! ACCCACTTGGGTTGACCTGG+TGG + Chr8:17259295-17259314 MsG0880042991.01.T01:intron 60.0%
!! GGAACCCACTTGGGTTGACC+TGG + Chr8:17259292-17259311 MsG0880042991.01.T01:intron 60.0%
AGGGAGGGAGTCTGAGCCAC+AGG - Chr8:17260546-17260565 None:intergenic 65.0%
ATGGGAGGAGGGACCGAGTC+TGG + Chr8:17260458-17260477 MsG0880042991.01.T01:intron 65.0%
CGTCTTGGGTCGATGGGAGG+AGG + Chr8:17260446-17260465 MsG0880042991.01.T01:intron 65.0%
GTGCTCCTCCTCGACGTCTC+AGG + Chr8:17259340-17259359 MsG0880042991.01.T01:intron 65.0%
TGGGAGGAGGGACCGAGTCT+GGG + Chr8:17260459-17260478 MsG0880042991.01.T01:intron 65.0%
!! GGCGGCGCTGGTGACCTGAA+CGG - Chr8:17257907-17257926 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 17253143 17261953 17253143 ID=MsG0880042991.01;Name=MsG0880042991.01
Chr8 mRNA 17253143 17261953 17253143 ID=MsG0880042991.01.T01;Parent=MsG0880042991.01;Name=MsG0880042991.01.T01;_AED=0.50;_eAED=0.50;_QI=80|1|1|1|0|0|2|193|80
Chr8 five_prime_UTR 17253143 17253222 17253143 ID=MsG0880042991.01.T01:five_prime_utr;Parent=MsG0880042991.01.T01
Chr8 CDS 17253223 17253393 17253223 ID=MsG0880042991.01.T01:cds;Parent=MsG0880042991.01.T01
Chr8 CDS 17261689 17261760 17261689 ID=MsG0880042991.01.T01:cds;Parent=MsG0880042991.01.T01
Chr8 three_prime_UTR 17261761 17261953 17261761 ID=MsG0880042991.01.T01:three_prime_utr;Parent=MsG0880042991.01.T01
Chr8 mRNA 17261380 17261953 17261380 ID=MsG0880042991.01.T02;Parent=MsG0880042991.01;Name=MsG0880042991.01.T02;_AED=0.50;_eAED=0.50;_QI=0|0|0.5|1|0|0|2|193|80
Chr8 exon 17261380 17261550 17261380 ID=MsG0880042991.01.T02:exon:4536;Parent=MsG0880042991.01.T02
Chr8 CDS 17261380 17261550 17261380 ID=MsG0880042991.01.T02:cds;Parent=MsG0880042991.01.T02
Chr8 CDS 17261689 17261760 17261689 ID=MsG0880042991.01.T02:cds;Parent=MsG0880042991.01.T02
Chr8 three_prime_UTR 17261761 17261953 17261761 ID=MsG0880042991.01.T02:three_prime_utr;Parent=MsG0880042991.01.T02
Chr8 mRNA 17253143 17253588 17253143 ID=MsG0880042991.01.T03;Parent=MsG0880042991.01;Name=MsG0880042991.01.T03;_AED=0.50;_eAED=0.50;_QI=80|0|0.5|1|0|0|2|0|78
Chr8 exon 17253523 17253588 17253523 ID=MsG0880042991.01.T03:exon:4537;Parent=MsG0880042991.01.T03
Chr8 five_prime_UTR 17253143 17253222 17253143 ID=MsG0880042991.01.T03:five_prime_utr;Parent=MsG0880042991.01.T03
Chr8 CDS 17253223 17253393 17253223 ID=MsG0880042991.01.T03:cds;Parent=MsG0880042991.01.T03
Chr8 CDS 17253523 17253588 17253523 ID=MsG0880042991.01.T03:cds;Parent=MsG0880042991.01.T03
Chr8 mRNA 17261380 17261559 17261380 ID=MsG0880042991.01.T04;Parent=MsG0880042991.01;Name=MsG0880042991.01.T04;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|59
Chr8 exon 17261380 17261559 17261380 ID=MsG0880042991.01.T04:exon:4538;Parent=MsG0880042991.01.T04
Chr8 CDS 17261380 17261559 17261380 ID=MsG0880042991.01.T04:cds;Parent=MsG0880042991.01.T04
Gene Sequence

>MsG0880042991.01.T01

ATGGGGCGGAAAGCTGGCGGGCTTTTTATCAACTCTAAGAGATTCAGTTCACTTCATAAACCTTGCATGAAGGAAATGATCATGTTTATGAACTGTATGGCTACAAGCCATAGCGATGTTGAAGCATGTGCTAAGCATAAGGAAATATTAAATACATGTATAGAATCTCAGAGTAAAAAGAACAGAAAGTCTTGGGGGAGTATCAATTATCAACTGCAGAGGCTTAGCCGTGGAAGGAAGTAG

>MsG0880042991.01.T02

ATGGGGCGGAAAGCTGGCGGGCTTTTTATCAACTCTAAGAGATTCAGTTCACTTCATAAACCTTGCATGAAGGAAATGATCATGTTTATGAACTGTATGGCTACAAGCCACAGTGATGTTGAAGCATGTGCTAAGCAGAAGGAAATATTAAATGCATGTATAGAATCTCAGAGTAAAAAGAACAGAAAGTCTTGGGGGAGTATCAATTATCAACTGCAGAGGCTTAGCCGTGGAAGGAAGTAG

>MsG0880042991.01.T03

ATGGGGCGGAAAGCTGGCGGGCTTTTTATCAACTCTAAGAGATTCAGTTCACTTCATAAACCTTGCATGAAGGAAATGATCATGTTTATGAACTGTATGGCTACAAGCCATAGCGATGTTGAAGCATGTGCTAAGCATAAGGAAATATTAAATACATGTATAGAATCTCAGAGTAAAAAGAACAGAAAGTCTTGGGGGAGTATCAATTATCAACTACAGAGTCGTGGAAGGAAGTAG

>MsG0880042991.01.T04

ATGGGGCGGAAAGCTGGCGGGCTTTTTATCAACTCTAAGAGATTCAGTTCACTTCATAAACCTTGCATGAAGGAAATGATCATGTTTATGAACTGTATGGCTACAAGCCACAGTGATGTTGAAGCATGTGCTAAGCAGAAGGAAATATTAAATGCATGTATAGAATCTCAGGTACTATAG

Protein sequence

>MsG0880042991.01.T01

MGRKAGGLFINSKRFSSLHKPCMKEMIMFMNCMATSHSDVEACAKHKEILNTCIESQSKKNRKSWGSINYQLQRLSRGRK*

>MsG0880042991.01.T02

MGRKAGGLFINSKRFSSLHKPCMKEMIMFMNCMATSHSDVEACAKQKEILNACIESQSKKNRKSWGSINYQLQRLSRGRK*

>MsG0880042991.01.T03

MGRKAGGLFINSKRFSSLHKPCMKEMIMFMNCMATSHSDVEACAKHKEILNTCIESQSKKNRKSWGSINYQLQSRGRK*

>MsG0880042991.01.T04

MGRKAGGLFINSKRFSSLHKPCMKEMIMFMNCMATSHSDVEACAKQKEILNACIESQVL*