Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042720 | XP_003592540.2 | 85.185 | 54 | 8 | 0 | 62 | 115 | 155 | 208 | 1.73e-21 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042720 | G7IAS0 | 85.185 | 54 | 8 | 0 | 62 | 115 | 155 | 208 | 8.27e-22 | 99.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0042720 | 0.808491 | 3.016717e-50 | -8.615850e-47 |
| Msa0027260 | Msa0042720 | 0.812281 | 4.588632e-51 | -8.615850e-47 |
| Msa0040690 | Msa0042720 | 0.811502 | 6.780663e-51 | -8.615850e-47 |
| Msa0042720 | Msa0047160 | 0.813999 | 1.926003e-51 | -8.615850e-47 |
| Msa0042720 | Msa0073670 | 0.802259 | 6.105788e-49 | -8.615850e-47 |
| Msa0042720 | Msa0074320 | 0.804074 | 2.572497e-49 | -8.615850e-47 |
| Msa0042720 | Msa0094470 | 0.817925 | 2.560213e-52 | -8.615850e-47 |
| Msa0042720 | Msa0124340 | 0.801258 | 9.801196e-49 | -8.615850e-47 |
| Msa0042720 | Msa0128860 | 0.803008 | 4.279208e-49 | -8.615850e-47 |
| Msa0042720 | Msa0146280 | 0.816956 | 4.232174e-52 | -8.615850e-47 |
| Msa0042720 | Msa0174730 | 0.803956 | 2.721741e-49 | -8.615850e-47 |
| Msa0042720 | Msa0180020 | 0.820830 | 5.576041e-53 | -8.615850e-47 |
| Msa0042720 | Msa0187930 | 0.804616 | 1.983040e-49 | -8.615850e-47 |
| Msa0042720 | Msa0189300 | 0.801139 | 1.036608e-48 | -8.615850e-47 |
| Msa0042720 | Msa0194540 | 0.811001 | 8.709368e-51 | -8.615850e-47 |
| Msa0042720 | Msa0231660 | 0.808192 | 3.494753e-50 | -8.615850e-47 |
| Msa0042720 | Msa0262340 | 0.808886 | 2.484756e-50 | -8.615850e-47 |
| Msa0042720 | Msa0268130 | 0.805435 | 1.336808e-49 | -8.615850e-47 |
| Msa0042720 | Msa0284410 | 0.803548 | 3.307444e-49 | -8.615850e-47 |
| Msa0042720 | Msa0526540 | 0.802534 | 5.359145e-49 | -8.615850e-47 |
| Msa0042720 | Msa0616240 | 0.812800 | 3.532157e-51 | -8.615850e-47 |
| Msa0042720 | Msa0699570 | 0.819449 | 1.154809e-52 | -8.615850e-47 |
| Msa0042720 | Msa0701280 | 0.808445 | 3.087089e-50 | -8.615850e-47 |
| Msa0042720 | Msa0786270 | 0.801336 | 9.445702e-49 | -8.615850e-47 |
| Msa0042720 | Msa0968590 | 0.807220 | 5.622332e-50 | -8.615850e-47 |
| Msa0042720 | Msa1019240 | 0.819916 | 9.032641e-53 | -8.615850e-47 |
| Msa0042720 | Msa1019260 | 0.810097 | 1.365410e-50 | -8.615850e-47 |
| Msa0042720 | Msa1104140 | 0.828951 | 6.758223e-55 | -8.615850e-47 |
| Msa0042720 | Msa1104210 | 0.822185 | 2.711495e-53 | -8.615850e-47 |
| Msa0042720 | Msa1106700 | 0.811610 | 6.422525e-51 | -8.615850e-47 |
| Msa0042720 | Msa1265630 | 0.811033 | 8.570050e-51 | -8.615850e-47 |
| Msa0042720 | Msa1343070 | 0.800425 | 1.449812e-48 | -8.615850e-47 |
| Msa0042720 | Msa1374040 | 0.806229 | 9.104180e-50 | -8.615850e-47 |
| Msa0042720 | Msa1374060 | 0.814880 | 1.229812e-51 | -8.615850e-47 |
| Msa0042720 | Msa1379760 | 0.806372 | 8.495595e-50 | -8.615850e-47 |
| Msa0042720 | Msa1381150 | 0.811819 | 5.785747e-51 | -8.615850e-47 |
| Msa0042720 | Msa1382560 | 0.808393 | 3.166867e-50 | -8.615850e-47 |
| Msa0042720 | Msa1394290 | 0.813194 | 2.896184e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042720 | MtrunA17_Chr1g0208371 | 85.185 | 54 | 8 | 0 | 62 | 115 | 155 | 208 | 1.59e-25 | 99.4 |
| Msa0042720 | MtrunA17_Chr1g0208321 | 86.667 | 30 | 4 | 0 | 20 | 49 | 1 | 30 | 7.90e-12 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAACTTGTTCTTGTAAT+TGG | 0.085666 | 1_1:+73611195 | None:intergenic |
| CCATTGCAGGAGTAACTTTA+TGG | 0.180849 | 1_1:+73611228 | None:intergenic |
| CGTTCTTGCTCAGGGTAATT+TGG | 0.215459 | 1_1:+73611102 | None:intergenic |
| TGGATTGAAGCCTCAAATAT+TGG | 0.265159 | 1_1:-73610991 | Msa0042720:CDS |
| CAAAGGCATTTCAGCATGTT+AGG | 0.300979 | 1_1:-73612554 | None:intergenic |
| TAATTTGGCGAGAGCTGATT+AGG | 0.348443 | 1_1:+73611117 | None:intergenic |
| ATCAACTTGTTCTTGTAATT+GGG | 0.349026 | 1_1:+73611196 | None:intergenic |
| TGGGAGACAATGTCCATTGC+AGG | 0.412577 | 1_1:+73611215 | None:intergenic |
| CATTTAGCTTCTAACACTGT+TGG | 0.415082 | 1_1:-73611164 | Msa0042720:CDS |
| AAGTGTCACCGTTCTTGCTC+AGG | 0.421887 | 1_1:+73611093 | None:intergenic |
| ATTTAGCTTCTAACACTGTT+GGG | 0.450437 | 1_1:-73611163 | Msa0042720:CDS |
| ATCCTCTCAAACGTCTTCAA+TGG | 0.456070 | 1_1:+73611023 | None:intergenic |
| ATTGAAGACGTTTGAGAGGA+TGG | 0.458694 | 1_1:-73611021 | Msa0042720:CDS |
| TTGGTAAAATCCAATATTTG+AGG | 0.488016 | 1_1:+73610981 | None:intergenic |
| CACATATCGCCGAGCAATGA+GGG | 0.514604 | 1_1:+73611067 | None:intergenic |
| CACTGTTGGGACATTGCAAA+GGG | 0.516775 | 1_1:-73611150 | Msa0042720:CDS |
| GCACGAAACATTGATTACCT+TGG | 0.533765 | 1_1:+73610962 | None:intergenic |
| GGCGAGAGCTGATTAGGAGA+GGG | 0.542486 | 1_1:+73611123 | None:intergenic |
| CCATAAAGTTACTCCTGCAA+TGG | 0.550593 | 1_1:-73611228 | Msa0042720:CDS |
| TGTGAGAGATAAGATTATCA+AGG | 0.555970 | 1_1:-73611048 | Msa0042720:CDS |
| CAAATTACCCTGAGCAAGAA+CGG | 0.571247 | 1_1:-73611101 | Msa0042720:CDS |
| AACCATTGAAGACGTTTGAG+AGG | 0.577335 | 1_1:-73611025 | Msa0042720:CDS |
| AGTGTCACCGTTCTTGCTCA+GGG | 0.587829 | 1_1:+73611094 | None:intergenic |
| ACACTGTTGGGACATTGCAA+AGG | 0.594567 | 1_1:-73611151 | Msa0042720:CDS |
| TCACATATCGCCGAGCAATG+AGG | 0.598991 | 1_1:+73611066 | None:intergenic |
| GCGAGAGCTGATTAGGAGAG+GGG | 0.607324 | 1_1:+73611124 | None:intergenic |
| AGGCATTTCAGCATGTTAGG+AGG | 0.609819 | 1_1:-73612551 | None:intergenic |
| TGGCGAGAGCTGATTAGGAG+AGG | 0.623448 | 1_1:+73611122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGAATAGATTAATTTA+TGG | - | chr1_1:73611256-73611275 | Msa0042720:CDS | 10.0% |
| !! | AAACAAAAAAAAAAAAATGT+TGG | + | chr1_1:73611581-73611600 | None:intergenic | 10.0% |
| !! | AATTAGAATAGATTAATTTA+TGG | - | chr1_1:73611256-73611275 | Msa0042720:CDS | 10.0% |
| !! | AAACAAAAAAAAAAAAATGT+TGG | + | chr1_1:73611581-73611600 | None:intergenic | 10.0% |
| !! | ATTCAAAATATGTGAATATA+TGG | + | chr1_1:73611943-73611962 | None:intergenic | 15.0% |
| !! | ATTCAAAATATGTGAATATA+TGG | + | chr1_1:73611943-73611962 | None:intergenic | 15.0% |
| !! | TTATCACTTGTATTTGTAAT+TGG | - | chr1_1:73611319-73611338 | Msa0042720:intron | 20.0% |
| !! | TATCACTTGTATTTGTAATT+GGG | - | chr1_1:73611320-73611339 | Msa0042720:intron | 20.0% |
| !! | TATTTGTAATTGGGATAAAT+TGG | - | chr1_1:73611329-73611348 | Msa0042720:intron | 20.0% |
| !! | ATTTGTAATTGGGATAAATT+GGG | - | chr1_1:73611330-73611349 | Msa0042720:intron | 20.0% |
| !! | AAATTAGCTATTTATGTCAA+GGG | + | chr1_1:73611400-73611419 | None:intergenic | 20.0% |
| !! | TGACATAGTATAAGAAATTA+TGG | + | chr1_1:73611700-73611719 | None:intergenic | 20.0% |
| !!! | ATTATTAGACTTATTTTCGA+TGG | - | chr1_1:73611882-73611901 | Msa0042720:intron | 20.0% |
| !! | ATATGTGAATATATGGAAAA+TGG | + | chr1_1:73611936-73611955 | None:intergenic | 20.0% |
| !! | TTATCACTTGTATTTGTAAT+TGG | - | chr1_1:73611319-73611338 | Msa0042720:intron | 20.0% |
| !! | TATCACTTGTATTTGTAATT+GGG | - | chr1_1:73611320-73611339 | Msa0042720:intron | 20.0% |
| !! | TATTTGTAATTGGGATAAAT+TGG | - | chr1_1:73611329-73611348 | Msa0042720:intron | 20.0% |
| !! | ATTTGTAATTGGGATAAATT+GGG | - | chr1_1:73611330-73611349 | Msa0042720:intron | 20.0% |
| !! | AAATTAGCTATTTATGTCAA+GGG | + | chr1_1:73611400-73611419 | None:intergenic | 20.0% |
| !! | TGACATAGTATAAGAAATTA+TGG | + | chr1_1:73611700-73611719 | None:intergenic | 20.0% |
| !!! | ATTATTAGACTTATTTTCGA+TGG | - | chr1_1:73611882-73611901 | Msa0042720:intron | 20.0% |
| !! | ATATGTGAATATATGGAAAA+TGG | + | chr1_1:73611936-73611955 | None:intergenic | 20.0% |
| ! | TGCTTCAAATTTCAGTAATT+TGG | - | chr1_1:73611016-73611035 | Msa0042720:CDS | 25.0% |
| ! | GCTTCAAATTTCAGTAATTT+GGG | - | chr1_1:73611017-73611036 | Msa0042720:CDS | 25.0% |
| !!! | AAAATAAAGCACCTTTTCAA+TGG | + | chr1_1:73611120-73611139 | None:intergenic | 25.0% |
| ! | TAAAAACAACAATTCAGACA+AGG | + | chr1_1:73611156-73611175 | None:intergenic | 25.0% |
| ! | GAAATTAGCTATTTATGTCA+AGG | + | chr1_1:73611401-73611420 | None:intergenic | 25.0% |
| ! | AGCACAAAATTTACAAATCA+TGG | + | chr1_1:73611492-73611511 | None:intergenic | 25.0% |
| ! | TTTAATCTTCATAATCTGTG+TGG | - | chr1_1:73611664-73611683 | Msa0042720:intron | 25.0% |
| ! | ACTAACATACAATTCAGAAA+AGG | + | chr1_1:73611797-73611816 | None:intergenic | 25.0% |
| ! | AATATATGGAAAATGGATGT+CGG | + | chr1_1:73611929-73611948 | None:intergenic | 25.0% |
| ! | CATTAAAAAAACAACAGACA+TGG | + | chr1_1:73611973-73611992 | None:intergenic | 25.0% |
| !!! | TTTTTTTAATGCTGAAAGTG+AGG | - | chr1_1:73611982-73612001 | Msa0042720:intron | 25.0% |
| ! | CAAATGAAAGAAAATGACAT+AGG | + | chr1_1:73612022-73612041 | None:intergenic | 25.0% |
| !!! | GTTTTGACAAATGAAATAGA+CGG | + | chr1_1:73612072-73612091 | None:intergenic | 25.0% |
| ! | TGAAAACTTCTATGAATCAT+AGG | + | chr1_1:73612094-73612113 | None:intergenic | 25.0% |
| ! | ATTTCACATAAGCATATAGT+TGG | - | chr1_1:73612125-73612144 | Msa0042720:intron | 25.0% |
| !!! | TTTTGATTTTGAGTATGTGT+TGG | - | chr1_1:73612149-73612168 | Msa0042720:intron | 25.0% |
| ! | ATGCATATGTATAAACATGT+AGG | - | chr1_1:73612175-73612194 | Msa0042720:intron | 25.0% |
| !! | ATCAACTTGTTCTTGTAATT+GGG | + | chr1_1:73612287-73612306 | None:intergenic | 25.0% |
| !! | TATCAACTTGTTCTTGTAAT+TGG | + | chr1_1:73612288-73612307 | None:intergenic | 25.0% |
| ! | TTGGTAAAATCCAATATTTG+AGG | + | chr1_1:73612502-73612521 | None:intergenic | 25.0% |
| !! | TCAAATATTGGATTTTACCA+AGG | - | chr1_1:73612501-73612520 | Msa0042720:intron | 25.0% |
| ! | TGCTTCAAATTTCAGTAATT+TGG | - | chr1_1:73611016-73611035 | Msa0042720:CDS | 25.0% |
| ! | GCTTCAAATTTCAGTAATTT+GGG | - | chr1_1:73611017-73611036 | Msa0042720:CDS | 25.0% |
| !!! | AAAATAAAGCACCTTTTCAA+TGG | + | chr1_1:73611120-73611139 | None:intergenic | 25.0% |
| ! | TAAAAACAACAATTCAGACA+AGG | + | chr1_1:73611156-73611175 | None:intergenic | 25.0% |
| ! | GAAATTAGCTATTTATGTCA+AGG | + | chr1_1:73611401-73611420 | None:intergenic | 25.0% |
| ! | AGCACAAAATTTACAAATCA+TGG | + | chr1_1:73611492-73611511 | None:intergenic | 25.0% |
| ! | TTTAATCTTCATAATCTGTG+TGG | - | chr1_1:73611664-73611683 | Msa0042720:intron | 25.0% |
| ! | ACTAACATACAATTCAGAAA+AGG | + | chr1_1:73611797-73611816 | None:intergenic | 25.0% |
| ! | AATATATGGAAAATGGATGT+CGG | + | chr1_1:73611929-73611948 | None:intergenic | 25.0% |
| ! | CATTAAAAAAACAACAGACA+TGG | + | chr1_1:73611973-73611992 | None:intergenic | 25.0% |
| !!! | TTTTTTTAATGCTGAAAGTG+AGG | - | chr1_1:73611982-73612001 | Msa0042720:intron | 25.0% |
| ! | CAAATGAAAGAAAATGACAT+AGG | + | chr1_1:73612022-73612041 | None:intergenic | 25.0% |
| !!! | GTTTTGACAAATGAAATAGA+CGG | + | chr1_1:73612072-73612091 | None:intergenic | 25.0% |
| ! | TGAAAACTTCTATGAATCAT+AGG | + | chr1_1:73612094-73612113 | None:intergenic | 25.0% |
| ! | ATTTCACATAAGCATATAGT+TGG | - | chr1_1:73612125-73612144 | Msa0042720:intron | 25.0% |
| !!! | TTTTGATTTTGAGTATGTGT+TGG | - | chr1_1:73612149-73612168 | Msa0042720:intron | 25.0% |
| ! | ATGCATATGTATAAACATGT+AGG | - | chr1_1:73612175-73612194 | Msa0042720:intron | 25.0% |
| !! | ATCAACTTGTTCTTGTAATT+GGG | + | chr1_1:73612287-73612306 | None:intergenic | 25.0% |
| !! | TATCAACTTGTTCTTGTAAT+TGG | + | chr1_1:73612288-73612307 | None:intergenic | 25.0% |
| ! | TTGGTAAAATCCAATATTTG+AGG | + | chr1_1:73612502-73612521 | None:intergenic | 25.0% |
| !! | TCAAATATTGGATTTTACCA+AGG | - | chr1_1:73612501-73612520 | Msa0042720:intron | 25.0% |
| AATGGATCACTTAAAAAGCT+TGG | + | chr1_1:73610978-73610997 | None:intergenic | 30.0% | |
| TCAAATTTCAGTAATTTGGG+CGG | - | chr1_1:73611020-73611039 | Msa0042720:CDS | 30.0% | |
| ! | TAACCCTTGAAAATGTTTTG+CGG | - | chr1_1:73611043-73611062 | Msa0042720:CDS | 30.0% |
| ! | TATCCGCAAAACATTTTCAA+GGG | + | chr1_1:73611049-73611068 | None:intergenic | 30.0% |
| ! | TAAATCTGTGTAAGTGTTGT+TGG | - | chr1_1:73611079-73611098 | Msa0042720:CDS | 30.0% |
| ! | TTTTCAATGGTTGTTCCAAA+AGG | + | chr1_1:73611107-73611126 | None:intergenic | 30.0% |
| !!! | TTTTGGAACAACCATTGAAA+AGG | - | chr1_1:73611106-73611125 | Msa0042720:CDS | 30.0% |
| !!! | AAGGTGCTTTATTTTCAAGA+TGG | - | chr1_1:73611125-73611144 | Msa0042720:CDS | 30.0% |
| AGTCAAAGATGCAGATATAT+AGG | + | chr1_1:73611447-73611466 | None:intergenic | 30.0% | |
| !! | TAGGATTAAAGGCATGATTT+TGG | - | chr1_1:73611634-73611653 | Msa0042720:intron | 30.0% |
| ! | TCTTTTCTTGAAAAAGAGAG+AGG | - | chr1_1:73611727-73611746 | Msa0042720:intron | 30.0% |
| CTGCAGAATAAGAAACATAA+AGG | + | chr1_1:73612204-73612223 | None:intergenic | 30.0% | |
| ! | ATTTAGCTTCTAACACTGTT+GGG | - | chr1_1:73612317-73612336 | Msa0042720:intron | 30.0% |
| TGTGAGAGATAAGATTATCA+AGG | - | chr1_1:73612432-73612451 | Msa0042720:intron | 30.0% | |
| TTTGAGAGGATGGAAAAATA+TGG | - | chr1_1:73612469-73612488 | Msa0042720:intron | 30.0% | |
| AATGGATCACTTAAAAAGCT+TGG | + | chr1_1:73610978-73610997 | None:intergenic | 30.0% | |
| TCAAATTTCAGTAATTTGGG+CGG | - | chr1_1:73611020-73611039 | Msa0042720:CDS | 30.0% | |
| ! | TAACCCTTGAAAATGTTTTG+CGG | - | chr1_1:73611043-73611062 | Msa0042720:CDS | 30.0% |
| ! | TATCCGCAAAACATTTTCAA+GGG | + | chr1_1:73611049-73611068 | None:intergenic | 30.0% |
| ! | TAAATCTGTGTAAGTGTTGT+TGG | - | chr1_1:73611079-73611098 | Msa0042720:CDS | 30.0% |
| ! | TTTTCAATGGTTGTTCCAAA+AGG | + | chr1_1:73611107-73611126 | None:intergenic | 30.0% |
| !!! | TTTTGGAACAACCATTGAAA+AGG | - | chr1_1:73611106-73611125 | Msa0042720:CDS | 30.0% |
| !!! | AAGGTGCTTTATTTTCAAGA+TGG | - | chr1_1:73611125-73611144 | Msa0042720:CDS | 30.0% |
| AGTCAAAGATGCAGATATAT+AGG | + | chr1_1:73611447-73611466 | None:intergenic | 30.0% | |
| !! | TAGGATTAAAGGCATGATTT+TGG | - | chr1_1:73611634-73611653 | Msa0042720:intron | 30.0% |
| ! | TCTTTTCTTGAAAAAGAGAG+AGG | - | chr1_1:73611727-73611746 | Msa0042720:intron | 30.0% |
| CTGCAGAATAAGAAACATAA+AGG | + | chr1_1:73612204-73612223 | None:intergenic | 30.0% | |
| ! | ATTTAGCTTCTAACACTGTT+GGG | - | chr1_1:73612317-73612336 | Msa0042720:intron | 30.0% |
| TGTGAGAGATAAGATTATCA+AGG | - | chr1_1:73612432-73612451 | Msa0042720:intron | 30.0% | |
| TTTGAGAGGATGGAAAAATA+TGG | - | chr1_1:73612469-73612488 | Msa0042720:intron | 30.0% | |
| !! | AAAGCTTGGTGTGATTTAGA+TGG | + | chr1_1:73610964-73610983 | None:intergenic | 35.0% |
| !! | AGTGATCCATTGACTTTGTT+AGG | - | chr1_1:73610987-73611006 | Msa0042720:CDS | 35.0% |
| ! | GTATCCGCAAAACATTTTCA+AGG | + | chr1_1:73611050-73611069 | None:intergenic | 35.0% |
| !! | TAAGTGTTGTTGGATCCTTT+TGG | - | chr1_1:73611089-73611108 | Msa0042720:CDS | 35.0% |
| ! | TTTTAACCGATGTTGCTCAT+AGG | - | chr1_1:73611171-73611190 | Msa0042720:CDS | 35.0% |
| ! | ACTTTTCCTATGAGCAACAT+CGG | + | chr1_1:73611180-73611199 | None:intergenic | 35.0% |
| !!! | TGTTTTGAAGACAATCTCAG+AGG | + | chr1_1:73611844-73611863 | None:intergenic | 35.0% |
| ! | CATTTAGCTTCTAACACTGT+TGG | - | chr1_1:73612316-73612335 | Msa0042720:intron | 35.0% |
| TGGATTGAAGCCTCAAATAT+TGG | - | chr1_1:73612489-73612508 | Msa0042720:intron | 35.0% | |
| !! | AAAGCTTGGTGTGATTTAGA+TGG | + | chr1_1:73610964-73610983 | None:intergenic | 35.0% |
| !! | AGTGATCCATTGACTTTGTT+AGG | - | chr1_1:73610987-73611006 | Msa0042720:CDS | 35.0% |
| ! | GTATCCGCAAAACATTTTCA+AGG | + | chr1_1:73611050-73611069 | None:intergenic | 35.0% |
| !! | TAAGTGTTGTTGGATCCTTT+TGG | - | chr1_1:73611089-73611108 | Msa0042720:CDS | 35.0% |
| ! | TTTTAACCGATGTTGCTCAT+AGG | - | chr1_1:73611171-73611190 | Msa0042720:CDS | 35.0% |
| ! | ACTTTTCCTATGAGCAACAT+CGG | + | chr1_1:73611180-73611199 | None:intergenic | 35.0% |
| !!! | TGTTTTGAAGACAATCTCAG+AGG | + | chr1_1:73611844-73611863 | None:intergenic | 35.0% |
| ! | CATTTAGCTTCTAACACTGT+TGG | - | chr1_1:73612316-73612335 | Msa0042720:intron | 35.0% |
| TGGATTGAAGCCTCAAATAT+TGG | - | chr1_1:73612489-73612508 | Msa0042720:intron | 35.0% | |
| !! | GATCCATTGACTTTGTTAGG+AGG | - | chr1_1:73610990-73611009 | Msa0042720:CDS | 40.0% |
| ATGCCTCCTAACAAAGTCAA+TGG | + | chr1_1:73610996-73611015 | None:intergenic | 40.0% | |
| GATGTTGCTCATAGGAAAAG+TGG | - | chr1_1:73611179-73611198 | Msa0042720:CDS | 40.0% | |
| CCAACGACAAAAATAACACG+TGG | + | chr1_1:73611236-73611255 | None:intergenic | 40.0% | |
| !!! | CCACGTGTTATTTTTGTCGT+TGG | - | chr1_1:73611233-73611252 | Msa0042720:CDS | 40.0% |
| TTGCTGCATTTGCTTGTACT+TGG | - | chr1_1:73611600-73611619 | Msa0042720:intron | 40.0% | |
| TGCTGCATTTGCTTGTACTT+GGG | - | chr1_1:73611601-73611620 | Msa0042720:intron | 40.0% | |
| CCATTGCAGGAGTAACTTTA+TGG | + | chr1_1:73612255-73612274 | None:intergenic | 40.0% | |
| CCATAAAGTTACTCCTGCAA+TGG | - | chr1_1:73612252-73612271 | Msa0042720:intron | 40.0% | |
| TAATTTGGCGAGAGCTGATT+AGG | + | chr1_1:73612366-73612385 | None:intergenic | 40.0% | |
| CAAATTACCCTGAGCAAGAA+CGG | - | chr1_1:73612379-73612398 | Msa0042720:intron | 40.0% | |
| !!! | ACACTTTTTCCCTCATTGCT+CGG | - | chr1_1:73612404-73612423 | Msa0042720:intron | 40.0% |
| AACCATTGAAGACGTTTGAG+AGG | - | chr1_1:73612455-73612474 | Msa0042720:intron | 40.0% | |
| ATCCTCTCAAACGTCTTCAA+TGG | + | chr1_1:73612460-73612479 | None:intergenic | 40.0% | |
| ATTGAAGACGTTTGAGAGGA+TGG | - | chr1_1:73612459-73612478 | Msa0042720:intron | 40.0% | |
| ! | GCACGAAACATTGATTACCT+TGG | + | chr1_1:73612521-73612540 | None:intergenic | 40.0% |
| !! | GATCCATTGACTTTGTTAGG+AGG | - | chr1_1:73610990-73611009 | Msa0042720:CDS | 40.0% |
| ATGCCTCCTAACAAAGTCAA+TGG | + | chr1_1:73610996-73611015 | None:intergenic | 40.0% | |
| GATGTTGCTCATAGGAAAAG+TGG | - | chr1_1:73611179-73611198 | Msa0042720:CDS | 40.0% | |
| CCAACGACAAAAATAACACG+TGG | + | chr1_1:73611236-73611255 | None:intergenic | 40.0% | |
| !!! | CCACGTGTTATTTTTGTCGT+TGG | - | chr1_1:73611233-73611252 | Msa0042720:CDS | 40.0% |
| TTGCTGCATTTGCTTGTACT+TGG | - | chr1_1:73611600-73611619 | Msa0042720:intron | 40.0% | |
| TGCTGCATTTGCTTGTACTT+GGG | - | chr1_1:73611601-73611620 | Msa0042720:intron | 40.0% | |
| CCATTGCAGGAGTAACTTTA+TGG | + | chr1_1:73612255-73612274 | None:intergenic | 40.0% | |
| CCATAAAGTTACTCCTGCAA+TGG | - | chr1_1:73612252-73612271 | Msa0042720:intron | 40.0% | |
| TAATTTGGCGAGAGCTGATT+AGG | + | chr1_1:73612366-73612385 | None:intergenic | 40.0% | |
| CAAATTACCCTGAGCAAGAA+CGG | - | chr1_1:73612379-73612398 | Msa0042720:intron | 40.0% | |
| !!! | ACACTTTTTCCCTCATTGCT+CGG | - | chr1_1:73612404-73612423 | Msa0042720:intron | 40.0% |
| AACCATTGAAGACGTTTGAG+AGG | - | chr1_1:73612455-73612474 | Msa0042720:intron | 40.0% | |
| ATCCTCTCAAACGTCTTCAA+TGG | + | chr1_1:73612460-73612479 | None:intergenic | 40.0% | |
| ATTGAAGACGTTTGAGAGGA+TGG | - | chr1_1:73612459-73612478 | Msa0042720:intron | 40.0% | |
| ! | GCACGAAACATTGATTACCT+TGG | + | chr1_1:73612521-73612540 | None:intergenic | 40.0% |
| GCTGCATTTGCTTGTACTTG+GGG | - | chr1_1:73611602-73611621 | Msa0042720:intron | 45.0% | |
| GGTGCATGGGATAGGATTAA+AGG | - | chr1_1:73611623-73611642 | Msa0042720:intron | 45.0% | |
| CGATACATCGCACTTCACAT+AGG | + | chr1_1:73611768-73611787 | None:intergenic | 45.0% | |
| CGATGGTAATTCACTCCCAA+CGG | - | chr1_1:73611899-73611918 | Msa0042720:intron | 45.0% | |
| CTGAAAGTGAGGTTCTGTGA+TGG | - | chr1_1:73611993-73612012 | Msa0042720:intron | 45.0% | |
| ACACTGTTGGGACATTGCAA+AGG | - | chr1_1:73612329-73612348 | Msa0042720:intron | 45.0% | |
| CACTGTTGGGACATTGCAAA+GGG | - | chr1_1:73612330-73612349 | Msa0042720:intron | 45.0% | |
| CGTTCTTGCTCAGGGTAATT+TGG | + | chr1_1:73612381-73612400 | None:intergenic | 45.0% | |
| GCTGCATTTGCTTGTACTTG+GGG | - | chr1_1:73611602-73611621 | Msa0042720:intron | 45.0% | |
| GGTGCATGGGATAGGATTAA+AGG | - | chr1_1:73611623-73611642 | Msa0042720:intron | 45.0% | |
| CGATACATCGCACTTCACAT+AGG | + | chr1_1:73611768-73611787 | None:intergenic | 45.0% | |
| CGATGGTAATTCACTCCCAA+CGG | - | chr1_1:73611899-73611918 | Msa0042720:intron | 45.0% | |
| CTGAAAGTGAGGTTCTGTGA+TGG | - | chr1_1:73611993-73612012 | Msa0042720:intron | 45.0% | |
| ACACTGTTGGGACATTGCAA+AGG | - | chr1_1:73612329-73612348 | Msa0042720:intron | 45.0% | |
| CACTGTTGGGACATTGCAAA+GGG | - | chr1_1:73612330-73612349 | Msa0042720:intron | 45.0% | |
| CGTTCTTGCTCAGGGTAATT+TGG | + | chr1_1:73612381-73612400 | None:intergenic | 45.0% | |
| TTGCTTGTACTTGGGGTGCA+TGG | - | chr1_1:73611609-73611628 | Msa0042720:intron | 50.0% | |
| TGCTTGTACTTGGGGTGCAT+GGG | - | chr1_1:73611610-73611629 | Msa0042720:intron | 50.0% | |
| ATGGATGTCGGATGTCCGTT+GGG | + | chr1_1:73611917-73611936 | None:intergenic | 50.0% | |
| AATGGATGTCGGATGTCCGT+TGG | + | chr1_1:73611918-73611937 | None:intergenic | 50.0% | |
| TGGGAGACAATGTCCATTGC+AGG | + | chr1_1:73612268-73612287 | None:intergenic | 50.0% | |
| AGTGTCACCGTTCTTGCTCA+GGG | + | chr1_1:73612389-73612408 | None:intergenic | 50.0% | |
| AAGTGTCACCGTTCTTGCTC+AGG | + | chr1_1:73612390-73612409 | None:intergenic | 50.0% | |
| CACATATCGCCGAGCAATGA+GGG | + | chr1_1:73612416-73612435 | None:intergenic | 50.0% | |
| TCACATATCGCCGAGCAATG+AGG | + | chr1_1:73612417-73612436 | None:intergenic | 50.0% | |
| TTGCTTGTACTTGGGGTGCA+TGG | - | chr1_1:73611609-73611628 | Msa0042720:intron | 50.0% | |
| TGCTTGTACTTGGGGTGCAT+GGG | - | chr1_1:73611610-73611629 | Msa0042720:intron | 50.0% | |
| ATGGATGTCGGATGTCCGTT+GGG | + | chr1_1:73611917-73611936 | None:intergenic | 50.0% | |
| AATGGATGTCGGATGTCCGT+TGG | + | chr1_1:73611918-73611937 | None:intergenic | 50.0% | |
| TGGGAGACAATGTCCATTGC+AGG | + | chr1_1:73612268-73612287 | None:intergenic | 50.0% | |
| AGTGTCACCGTTCTTGCTCA+GGG | + | chr1_1:73612389-73612408 | None:intergenic | 50.0% | |
| AAGTGTCACCGTTCTTGCTC+AGG | + | chr1_1:73612390-73612409 | None:intergenic | 50.0% | |
| CACATATCGCCGAGCAATGA+GGG | + | chr1_1:73612416-73612435 | None:intergenic | 50.0% | |
| TCACATATCGCCGAGCAATG+AGG | + | chr1_1:73612417-73612436 | None:intergenic | 50.0% | |
| GTACTTGGGGTGCATGGGAT+AGG | - | chr1_1:73611615-73611634 | Msa0042720:intron | 55.0% | |
| GCGAGAGCTGATTAGGAGAG+GGG | + | chr1_1:73612359-73612378 | None:intergenic | 55.0% | |
| GGCGAGAGCTGATTAGGAGA+GGG | + | chr1_1:73612360-73612379 | None:intergenic | 55.0% | |
| TGGCGAGAGCTGATTAGGAG+AGG | + | chr1_1:73612361-73612380 | None:intergenic | 55.0% | |
| GTACTTGGGGTGCATGGGAT+AGG | - | chr1_1:73611615-73611634 | Msa0042720:intron | 55.0% | |
| GCGAGAGCTGATTAGGAGAG+GGG | + | chr1_1:73612359-73612378 | None:intergenic | 55.0% | |
| GGCGAGAGCTGATTAGGAGA+GGG | + | chr1_1:73612360-73612379 | None:intergenic | 55.0% | |
| TGGCGAGAGCTGATTAGGAG+AGG | + | chr1_1:73612361-73612380 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 73610941 | 73612561 | 73610941 | ID=Msa0042720;Name=Msa0042720 |
| chr1_1 | mRNA | 73610941 | 73612561 | 73610941 | ID=Msa0042720-mRNA-1;Parent=Msa0042720;Name=Msa0042720-mRNA-1;_AED=0.44;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|115 |
| chr1_1 | exon | 73612552 | 73612561 | 73612552 | ID=Msa0042720-mRNA-1:exon:24705;Parent=Msa0042720-mRNA-1 |
| chr1_1 | exon | 73610941 | 73611278 | 73610941 | ID=Msa0042720-mRNA-1:exon:24704;Parent=Msa0042720-mRNA-1 |
| chr1_1 | CDS | 73612552 | 73612561 | 73612552 | ID=Msa0042720-mRNA-1:cds;Parent=Msa0042720-mRNA-1 |
| chr1_1 | CDS | 73610941 | 73611278 | 73610941 | ID=Msa0042720-mRNA-1:cds;Parent=Msa0042720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
