AlfalfaGEDB | Msa1379760

M. sativa cultivar zhongmu-4 / Msa1379760

KEGG: K02891
GO: -
PFAM: PF01776.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1379760	XP_003591517.1	98.319	119	2	0	1	119	1	119	4.99e-79	238

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1379760	sp\|Q9M9W1\|RL222_ARATH	87.931	116	14	0	4	119	9	124	5.96e-62	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1379760	G7IF49	98.319	119	2	0	1	119	1	119	2.38e-79	238

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1379760	0.851628	7.839184e-61	-8.615850e-47
Msa0002490	Msa1379760	0.821627	3.650979e-53	-8.615850e-47
Msa0002750	Msa1379760	0.876920	9.514380e-69	-8.615850e-47
Msa0002790	Msa1379760	0.875578	2.758700e-68	-8.615850e-47
Msa0003640	Msa1379760	0.806573	7.704257e-50	-8.615850e-47
Msa0003700	Msa1379760	0.804411	2.187942e-49	-8.615850e-47
Msa0003720	Msa1379760	0.849561	2.987505e-60	-8.615850e-47
Msa0003780	Msa1379760	0.863930	1.751643e-64	-8.615850e-47
Msa0004540	Msa1379760	0.807242	5.561108e-50	-8.615850e-47
Msa0004950	Msa1379760	0.809372	1.955338e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1379760	MtrunA17_Chr1g0195471	98.319	119	2	1	119	1	119	4.59e-83	238
Msa1379760	MtrunA17_Chr7g0272321	94.444	108	6	12	119	17	124	9.06e-62	184
Msa1379760	MtrunA17_Chr1g0192241	94.915	59	3	61	119	18	76	1.26e-25	91.7

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1379760	AT3G05560.1	87.931	116	14	4	119	9	124	6.06e-63	187
Msa1379760	AT3G05560.3	87.931	116	14	4	119	9	124	6.06e-63	187
Msa1379760	AT3G05560.2	87.931	116	14	4	119	9	124	6.06e-63	187
Msa1379760	AT5G27770.1	86.735	98	13	11	108	16	113	1.47e-49	154
Msa1379760	AT1G02830.1	75.229	109	27	2	110	9	117	9.77e-46	144

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Find 51 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACAATGTGAGGGAT+TGG	0.474548	tig0020311:-13357	Msa1379760:CDS
AAAGCAATTACACCACCTAA+TGG	0.464571	tig0020311:+13215	None:intergenic
AATAACTATAAAACTTGGTG+GGG	0.566911	tig0020311:+13112	None:intergenic
AATATAAACTCGGGAGGTTT+TGG	0.218178	tig0020311:-14511	Msa1379760:five_prime_UTR
AGATCTTGTTCTCTATCTTG+AGG	0.582079	tig0020311:-13244	Msa1379760:three_prime_UTR
AGATTCAGTTATTTATATGC+TGG	0.465624	tig0020311:-13067	Msa1379760:three_prime_UTR
AGTCTCAACGCGAAAATGAG+CGG	0.596462	tig0020311:-14444	Msa1379760:exon
ATAAACATCTACCAACTAAA+AGG	0.310288	tig0020311:+13021	None:intergenic
ATAATAACTATAAAACTTGG+TGG	0.561346	tig0020311:+13110	None:intergenic
ATAGATATTGCGGTCCTTGT+TGG	0.377160	tig0020311:+13318	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGTGAACATTTCATTTAC+AGG	+	tig0020311:13349-13368	None:intergenic	30.0%
CATGTGTTTGAGTAATTATG+TGG	-	tig0020311:13365-13384	Msa1379760:CDS	30.0%
GTCAAATTCTATTCACATAC+AGG	+	tig0020311:13874-13893	None:intergenic	30.0%
ATACAAGTCTTCTTCTTCTT+TGG	-	tig0020311:14022-14041	Msa1379760:intron	30.0%
ATCTCAACTCATAGATATTG+CGG	+	tig0020311:14185-14204	None:intergenic	30.0%
CATGTGAACATTTCATTTAC+AGG	+	tig0020311:13349-13368	None:intergenic	30.0%
CATGTGTTTGAGTAATTATG+TGG	-	tig0020311:13365-13384	Msa1379760:CDS	30.0%
GTCAAATTCTATTCACATAC+AGG	+	tig0020311:13874-13893	None:intergenic	30.0%
ATACAAGTCTTCTTCTTCTT+TGG	-	tig0020311:14022-14041	Msa1379760:intron	30.0%
ATCTCAACTCATAGATATTG+CGG	+	tig0020311:14185-14204	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020311	gene	12975	14537	12975	ID=Msa1379760;Name=Msa1379760
tig0020311	mRNA	12975	14537	12975	ID=Msa1379760-mRNA-1;Parent=Msa1379760;Name=Msa1379760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86\|1\|1\|1\|1\|1\|2\|292\|119
tig0020311	exon	12975	13411	12975	ID=Msa1379760-mRNA-1:exon:6803;Parent=Msa1379760-mRNA-1
tig0020311	exon	14237	14537	14237	ID=Msa1379760-mRNA-1:exon:6802;Parent=Msa1379760-mRNA-1
tig0020311	five_prime_UTR	14452	14537	14452	ID=Msa1379760-mRNA-1:five_prime_utr;Parent=Msa1379760-mRNA-1
tig0020311	CDS	14237	14451	14237	ID=Msa1379760-mRNA-1:cds;Parent=Msa1379760-mRNA-1
tig0020311	CDS	13267	13411	13267	ID=Msa1379760-mRNA-1:cds;Parent=Msa1379760-mRNA-1
tig0020311	three_prime_UTR	12975	13266	12975	ID=Msa1379760-mRNA-1:three_prime_utr;Parent=Msa1379760-mRNA-1

Gene Sequence	>Msa1379760 ATGAGCGGAGTGAAGGGTAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCGCGAAGCCAGTTGAGGATAAGATTATGGACATCGCTTCCCTGGAGAAGTTTCTTCAGGAGAGGATTAAAGTTGGTGGTAAAGCTGGTGCTCTCGGTGATTCCGTTACTGTTACTCGTGACAAATCCAAGATCACTGTTACCTCCGATAGCAATTTCTCCAAAAGGTATTTGAAGTACTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGTGTTATTGCATCCAACAAGGACCGCAATATCTATGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAAGATGAAGACTAA
Protein sequence	>Msa1379760 MSGVKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEGEDED*