AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379760 MtrunA17_Chr1g0195471 98.319 119 2 0 1 119 1 119 4.59e-83 238
Msa1379760 MtrunA17_Chr7g0272321 94.444 108 6 0 12 119 17 124 9.06e-62 184
Msa1379760 MtrunA17_Chr1g0192241 94.915 59 3 0 61 119 18 76 1.26e-25 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379760 AT3G05560.1 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa1379760 AT3G05560.3 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa1379760 AT3G05560.2 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa1379760 AT5G27770.1 86.735 98 13 0 11 108 16 113 1.47e-49 154
Msa1379760 AT1G02830.1 75.229 109 27 0 2 110 9 117 9.77e-46 144

Find 51 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTGGGAACTCGAATT+TGG 0.136467 tig0020311:+12983 None:intergenic
AATATAAACTCGGGAGGTTT+TGG 0.218178 tig0020311:-14511 Msa1379760:five_prime_UTR
ATAAACATCTACCAACTAAA+AGG 0.310288 tig0020311:+13021 None:intergenic
TTCCCTGGAGAAGTTTCTTC+AGG 0.314117 tig0020311:-14343 Msa1379760:CDS
GCCAGTTGAGGATAAGATTA+TGG 0.328511 tig0020311:-14373 Msa1379760:CDS
ATTAGGTGGTGTAATTGCTT+TGG 0.366552 tig0020311:-13213 Msa1379760:three_prime_UTR
ATCTTGAGGCATTCTCCATT+AGG 0.367839 tig0020311:-13230 Msa1379760:three_prime_UTR
ATAGATATTGCGGTCCTTGT+TGG 0.377160 tig0020311:+13318 None:intergenic
CTTCCTGATGATGCAAAACT+AGG 0.386024 tig0020311:+14477 None:intergenic
TCCATAATCTTATCCTCAAC+TGG 0.404476 tig0020311:+14372 None:intergenic
ATGGGCGTAATTTCCTGCTC+TGG 0.406577 tig0020311:+12969 None:intergenic
CGGAGTGAAGGGTAAGAAGA+AGG 0.409364 tig0020311:-14424 Msa1379760:CDS
ATCGGAGGTAACAGTGATCT+TGG 0.422181 tig0020311:+14254 None:intergenic
GATTATGGACATCGCTTCCC+TGG 0.434039 tig0020311:-14358 Msa1379760:CDS
CGCGAAAATGAGCGGAGTGA+AGG 0.462475 tig0020311:-14436 Msa1379760:exon
TCTCCTGAAGAAACTTCTCC+AGG 0.463361 tig0020311:+14340 None:intergenic
AAAGCAATTACACCACCTAA+TGG 0.464571 tig0020311:+13215 None:intergenic
AGATTCAGTTATTTATATGC+TGG 0.465624 tig0020311:-13067 Msa1379760:three_prime_UTR
AAAAGCACAATGTGAGGGAT+TGG 0.474548 tig0020311:-13357 Msa1379760:CDS
CTTCAACATTGCTGAGAATG+AGG 0.480373 tig0020311:-13284 Msa1379760:CDS
CCGATAGCAATTTCTCCAAA+AGG 0.482446 tig0020311:-14236 Msa1379760:intron
ATTAAAGTTGGTGGTAAAGC+TGG 0.482585 tig0020311:-14315 Msa1379760:CDS
CAAATTCGAGTTCCCAGAGC+AGG 0.487490 tig0020311:-12982 Msa1379760:three_prime_UTR
CCGATAATAACTATAAAACT+TGG 0.504930 tig0020311:+13107 None:intergenic
CAGTTATTTATATGCTGGCA+TGG 0.507178 tig0020311:-13062 Msa1379760:three_prime_UTR
GCGAAAATGAGCGGAGTGAA+GGG 0.509201 tig0020311:-14435 Msa1379760:exon
CTTCAGGAGAGGATTAAAGT+TGG 0.530224 tig0020311:-14327 Msa1379760:CDS
TAATAACTATAAAACTTGGT+GGG 0.537506 tig0020311:+13111 None:intergenic
CATGATGAATAATATAAACT+CGG 0.541687 tig0020311:-14521 None:intergenic
CAGGAGAGGATTAAAGTTGG+TGG 0.545199 tig0020311:-14324 Msa1379760:CDS
TTCCTGATGATGCAAAACTA+GGG 0.545341 tig0020311:+14478 None:intergenic
TGGGCGTAATTTCCTGCTCT+GGG 0.552796 tig0020311:+12970 None:intergenic
GGTGGTAAAGCTGGTGCTCT+CGG 0.555561 tig0020311:-14306 Msa1379760:CDS
CGATTGCGCGAAGCCAGTTG+AGG 0.561050 tig0020311:-14385 Msa1379760:CDS
ATAATAACTATAAAACTTGG+TGG 0.561346 tig0020311:+13110 None:intergenic
TGGAGAAGTTTCTTCAGGAG+AGG 0.565476 tig0020311:-14338 Msa1379760:CDS
AATAACTATAAAACTTGGTG+GGG 0.566911 tig0020311:+13112 None:intergenic
TTGAGGCATTCTCCATTAGG+TGG 0.571382 tig0020311:-13227 Msa1379760:three_prime_UTR
GGAGTGAAGGGTAAGAAGAA+GGG 0.572006 tig0020311:-14423 Msa1379760:CDS
AGATCTTGTTCTCTATCTTG+AGG 0.582079 tig0020311:-13244 Msa1379760:three_prime_UTR
ATCTCAACTCATAGATATTG+CGG 0.582807 tig0020311:+13308 None:intergenic
AGTCTCAACGCGAAAATGAG+CGG 0.596462 tig0020311:-14444 Msa1379760:exon
ATGATGAATAATATAAACTC+GGG 0.599716 tig0020311:-14520 None:intergenic
TTTGGAGAAATTGCTATCGG+AGG 0.603460 tig0020311:+14239 None:intergenic
TCGTGTTATTGCATCCAACA+AGG 0.613064 tig0020311:-13332 Msa1379760:CDS
TTCAACATTGCTGAGAATGA+GGG 0.613248 tig0020311:-13283 Msa1379760:CDS
ATGAATAATATAAACTCGGG+AGG 0.618726 tig0020311:-14517 Msa1379760:five_prime_UTR
CTCCTGAAGAAACTTCTCCA+GGG 0.621359 tig0020311:+14341 None:intergenic
TTTGCATCATCAGGAAGAAG+GGG 0.624378 tig0020311:-14471 Msa1379760:five_prime_UTR
TTGCATCATCAGGAAGAAGG+GGG 0.675457 tig0020311:-14470 Msa1379760:five_prime_UTR
TTTGTCACGAGTAACAGTAA+CGG 0.687075 tig0020311:+14278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATGTCTTAATTTTTTT+TGG - tig0020311:13999-14018 Msa1379760:intron 15.0%
!!! TTAAAATTTTGTGTTTACTT+TGG - tig0020311:14343-14362 Msa1379760:CDS 15.0%
!!! CTTTATGTCTTAATTTTTTT+TGG - tig0020311:13999-14018 Msa1379760:intron 15.0%
!!! TTAAAATTTTGTGTTTACTT+TGG - tig0020311:14343-14362 Msa1379760:CDS 15.0%
!!! TATTTGTTGATTAATGTGTT+AGG - tig0020311:13293-13312 Msa1379760:CDS 20.0%
!! ATTTGACATTATTATGATTC+TGG - tig0020311:13887-13906 Msa1379760:intron 20.0%
!! GACAAAAAACATAGATAAAT+GGG + tig0020311:14306-14325 None:intergenic 20.0%
!! TGACAAAAAACATAGATAAA+TGG + tig0020311:14307-14326 None:intergenic 20.0%
!! TAATAACTATAAAACTTGGT+GGG + tig0020311:14382-14401 None:intergenic 20.0%
!! ATAATAACTATAAAACTTGG+TGG + tig0020311:14383-14402 None:intergenic 20.0%
!!! CCAAGTTTTATAGTTATTAT+CGG - tig0020311:14383-14402 Msa1379760:CDS 20.0%
!!! TATTTGTTGATTAATGTGTT+AGG - tig0020311:13293-13312 Msa1379760:CDS 20.0%
!! ATTTGACATTATTATGATTC+TGG - tig0020311:13887-13906 Msa1379760:intron 20.0%
!! GACAAAAAACATAGATAAAT+GGG + tig0020311:14306-14325 None:intergenic 20.0%
!! TGACAAAAAACATAGATAAA+TGG + tig0020311:14307-14326 None:intergenic 20.0%
!! TAATAACTATAAAACTTGGT+GGG + tig0020311:14382-14401 None:intergenic 20.0%
!! ATAATAACTATAAAACTTGG+TGG + tig0020311:14383-14402 None:intergenic 20.0%
!!! CCAAGTTTTATAGTTATTAT+CGG - tig0020311:14383-14402 Msa1379760:CDS 20.0%
! ATATGCTTCATGTAATTGTA+TGG - tig0020311:13442-13461 Msa1379760:intron 25.0%
! TATGCTTCATGTAATTGTAT+GGG - tig0020311:13443-13462 Msa1379760:intron 25.0%
! TCGTATATTTAGTGTATGTT+TGG - tig0020311:13489-13508 Msa1379760:intron 25.0%
! ATATTTAGTGTATGTTTGGA+TGG - tig0020311:13493-13512 Msa1379760:intron 25.0%
! TATTTAGTGTATGTTTGGAT+GGG - tig0020311:13494-13513 Msa1379760:intron 25.0%
! AAAAATAGTTAAACTGAGCT+GGG + tig0020311:13938-13957 None:intergenic 25.0%
! TAAAAATAGTTAAACTGAGC+TGG + tig0020311:13939-13958 None:intergenic 25.0%
!! AATAACTATAAAACTTGGTG+GGG + tig0020311:14381-14400 None:intergenic 25.0%
! CCGATAATAACTATAAAACT+TGG + tig0020311:14386-14405 None:intergenic 25.0%
! AGATTCAGTTATTTATATGC+TGG - tig0020311:14423-14442 Msa1379760:CDS 25.0%
! ATAAACATCTACCAACTAAA+AGG + tig0020311:14472-14491 None:intergenic 25.0%
! ATATGCTTCATGTAATTGTA+TGG - tig0020311:13442-13461 Msa1379760:intron 25.0%
! TATGCTTCATGTAATTGTAT+GGG - tig0020311:13443-13462 Msa1379760:intron 25.0%
! TCGTATATTTAGTGTATGTT+TGG - tig0020311:13489-13508 Msa1379760:intron 25.0%
! ATATTTAGTGTATGTTTGGA+TGG - tig0020311:13493-13512 Msa1379760:intron 25.0%
! TATTTAGTGTATGTTTGGAT+GGG - tig0020311:13494-13513 Msa1379760:intron 25.0%
! AAAAATAGTTAAACTGAGCT+GGG + tig0020311:13938-13957 None:intergenic 25.0%
! TAAAAATAGTTAAACTGAGC+TGG + tig0020311:13939-13958 None:intergenic 25.0%
!! AATAACTATAAAACTTGGTG+GGG + tig0020311:14381-14400 None:intergenic 25.0%
! CCGATAATAACTATAAAACT+TGG + tig0020311:14386-14405 None:intergenic 25.0%
! AGATTCAGTTATTTATATGC+TGG - tig0020311:14423-14442 Msa1379760:CDS 25.0%
! ATAAACATCTACCAACTAAA+AGG + tig0020311:14472-14491 None:intergenic 25.0%
! AAGATGAAGAAGTTACCTTT+TGG + tig0020311:13272-13291 None:intergenic 30.0%
CATGTGAACATTTCATTTAC+AGG + tig0020311:13349-13368 None:intergenic 30.0%
CATGTGTTTGAGTAATTATG+TGG - tig0020311:13365-13384 Msa1379760:CDS 30.0%
! CTGTAAGTCACCATAATTTT+GGG + tig0020311:13567-13586 None:intergenic 30.0%
! ACTGTAAGTCACCATAATTT+TGG + tig0020311:13568-13587 None:intergenic 30.0%
!!! TTTTGTTATTTTCTACCGTG+AGG - tig0020311:13676-13695 Msa1379760:intron 30.0%
GTCAAATTCTATTCACATAC+AGG + tig0020311:13874-13893 None:intergenic 30.0%
ATACAAGTCTTCTTCTTCTT+TGG - tig0020311:14022-14041 Msa1379760:intron 30.0%
ATCTCAACTCATAGATATTG+CGG + tig0020311:14185-14204 None:intergenic 30.0%
!!! GTTTTTTGTCAACTTGTTAC+TGG - tig0020311:14316-14335 Msa1379760:CDS 30.0%
! AAGATGAAGAAGTTACCTTT+TGG + tig0020311:13272-13291 None:intergenic 30.0%
CATGTGAACATTTCATTTAC+AGG + tig0020311:13349-13368 None:intergenic 30.0%
CATGTGTTTGAGTAATTATG+TGG - tig0020311:13365-13384 Msa1379760:CDS 30.0%
! CTGTAAGTCACCATAATTTT+GGG + tig0020311:13567-13586 None:intergenic 30.0%
! ACTGTAAGTCACCATAATTT+TGG + tig0020311:13568-13587 None:intergenic 30.0%
!!! TTTTGTTATTTTCTACCGTG+AGG - tig0020311:13676-13695 Msa1379760:intron 30.0%
GTCAAATTCTATTCACATAC+AGG + tig0020311:13874-13893 None:intergenic 30.0%
ATACAAGTCTTCTTCTTCTT+TGG - tig0020311:14022-14041 Msa1379760:intron 30.0%
ATCTCAACTCATAGATATTG+CGG + tig0020311:14185-14204 None:intergenic 30.0%
!!! GTTTTTTGTCAACTTGTTAC+TGG - tig0020311:14316-14335 Msa1379760:CDS 30.0%
! AATATAAACTCGGGAGGTTT+TGG - tig0020311:12979-12998 Msa1379760:three_prime_UTR 35.0%
! TTCCTGATGATGCAAAACTA+GGG + tig0020311:13015-13034 None:intergenic 35.0%
! TTTTGCATCATCAGGAAGAA+GGG - tig0020311:13018-13037 Msa1379760:three_prime_UTR 35.0%
TCCATAATCTTATCCTCAAC+TGG + tig0020311:13121-13140 None:intergenic 35.0%
!! ATTAAAGTTGGTGGTAAAGC+TGG - tig0020311:13175-13194 Msa1379760:three_prime_UTR 35.0%
TTTGTCACGAGTAACAGTAA+CGG + tig0020311:13215-13234 None:intergenic 35.0%
!! CCTTTTGGAGAAATTGCTAT+CGG + tig0020311:13257-13276 None:intergenic 35.0%
!! ATGTGGCTTTGAAATGTTGA+TGG - tig0020311:13382-13401 Msa1379760:CDS 35.0%
ATTGAATATTGAGACAGTGC+TGG - tig0020311:13413-13432 Msa1379760:intron 35.0%
! CGTAGGTTTTCCCAAAATTA+TGG - tig0020311:13554-13573 Msa1379760:intron 35.0%
TGTCATGAGAATCCTTAAGT+TGG + tig0020311:13785-13804 None:intergenic 35.0%
! GCGAGTATGATTTGTGTAAA+TGG - tig0020311:13821-13840 Msa1379760:intron 35.0%
! ATGATTTGTGTAAATGGTCC+TGG - tig0020311:13827-13846 Msa1379760:intron 35.0%
ACAGGAATACTAGACAATAG+TGG + tig0020311:13856-13875 None:intergenic 35.0%
GGACAAAAATAATCACACGA+AGG + tig0020311:14059-14078 None:intergenic 35.0%
!!! GTGCTTTTTCAAGTACTTCT+TGG + tig0020311:14121-14140 None:intergenic 35.0%
! ACTTGAAAAAGCACAATGTG+AGG - tig0020311:14127-14146 Msa1379760:intron 35.0%
! CTTGAAAAAGCACAATGTGA+GGG - tig0020311:14128-14147 Msa1379760:intron 35.0%
TTCAACATTGCTGAGAATGA+GGG - tig0020311:14207-14226 Msa1379760:intron 35.0%
AGATCTTGTTCTCTATCTTG+AGG - tig0020311:14246-14265 Msa1379760:CDS 35.0%
AAAGCAATTACACCACCTAA+TGG + tig0020311:14278-14297 None:intergenic 35.0%
ATTAGGTGGTGTAATTGCTT+TGG - tig0020311:14277-14296 Msa1379760:CDS 35.0%
CAGTTATTTATATGCTGGCA+TGG - tig0020311:14428-14447 Msa1379760:CDS 35.0%
! TATGTTCTGCACCTTTTAGT+TGG - tig0020311:14458-14477 Msa1379760:five_prime_UTR 35.0%
! AATATAAACTCGGGAGGTTT+TGG - tig0020311:12979-12998 Msa1379760:three_prime_UTR 35.0%
! TTCCTGATGATGCAAAACTA+GGG + tig0020311:13015-13034 None:intergenic 35.0%
! TTTTGCATCATCAGGAAGAA+GGG - tig0020311:13018-13037 Msa1379760:three_prime_UTR 35.0%
TCCATAATCTTATCCTCAAC+TGG + tig0020311:13121-13140 None:intergenic 35.0%
!! ATTAAAGTTGGTGGTAAAGC+TGG - tig0020311:13175-13194 Msa1379760:three_prime_UTR 35.0%
TTTGTCACGAGTAACAGTAA+CGG + tig0020311:13215-13234 None:intergenic 35.0%
!! CCTTTTGGAGAAATTGCTAT+CGG + tig0020311:13257-13276 None:intergenic 35.0%
!! ATGTGGCTTTGAAATGTTGA+TGG - tig0020311:13382-13401 Msa1379760:CDS 35.0%
ATTGAATATTGAGACAGTGC+TGG - tig0020311:13413-13432 Msa1379760:intron 35.0%
! CGTAGGTTTTCCCAAAATTA+TGG - tig0020311:13554-13573 Msa1379760:intron 35.0%
TGTCATGAGAATCCTTAAGT+TGG + tig0020311:13785-13804 None:intergenic 35.0%
! GCGAGTATGATTTGTGTAAA+TGG - tig0020311:13821-13840 Msa1379760:intron 35.0%
! ATGATTTGTGTAAATGGTCC+TGG - tig0020311:13827-13846 Msa1379760:intron 35.0%
ACAGGAATACTAGACAATAG+TGG + tig0020311:13856-13875 None:intergenic 35.0%
GGACAAAAATAATCACACGA+AGG + tig0020311:14059-14078 None:intergenic 35.0%
!!! GTGCTTTTTCAAGTACTTCT+TGG + tig0020311:14121-14140 None:intergenic 35.0%
! ACTTGAAAAAGCACAATGTG+AGG - tig0020311:14127-14146 Msa1379760:intron 35.0%
! CTTGAAAAAGCACAATGTGA+GGG - tig0020311:14128-14147 Msa1379760:intron 35.0%
TTCAACATTGCTGAGAATGA+GGG - tig0020311:14207-14226 Msa1379760:intron 35.0%
AGATCTTGTTCTCTATCTTG+AGG - tig0020311:14246-14265 Msa1379760:CDS 35.0%
AAAGCAATTACACCACCTAA+TGG + tig0020311:14278-14297 None:intergenic 35.0%
ATTAGGTGGTGTAATTGCTT+TGG - tig0020311:14277-14296 Msa1379760:CDS 35.0%
CAGTTATTTATATGCTGGCA+TGG - tig0020311:14428-14447 Msa1379760:CDS 35.0%
! TATGTTCTGCACCTTTTAGT+TGG - tig0020311:14458-14477 Msa1379760:five_prime_UTR 35.0%
!!! AACCCTAGTTTTGCATCATC+AGG - tig0020311:13010-13029 Msa1379760:three_prime_UTR 40.0%
! CTTCCTGATGATGCAAAACT+AGG + tig0020311:13016-13035 None:intergenic 40.0%
! GTTTTGCATCATCAGGAAGA+AGG - tig0020311:13017-13036 Msa1379760:three_prime_UTR 40.0%
TTTGCATCATCAGGAAGAAG+GGG - tig0020311:13019-13038 Msa1379760:three_prime_UTR 40.0%
GCCAGTTGAGGATAAGATTA+TGG - tig0020311:13117-13136 Msa1379760:three_prime_UTR 40.0%
CTTCAGGAGAGGATTAAAGT+TGG - tig0020311:13163-13182 Msa1379760:three_prime_UTR 40.0%
TTTGGAGAAATTGCTATCGG+AGG + tig0020311:13254-13273 None:intergenic 40.0%
CCGATAGCAATTTCTCCAAA+AGG - tig0020311:13254-13273 Msa1379760:exon 40.0%
TTAGTGTATGTTTGGATGGG+TGG - tig0020311:13497-13516 Msa1379760:intron 40.0%
TGGGAAAACCTACGAATTCA+GGG + tig0020311:13548-13567 None:intergenic 40.0%
TTGGGAAAACCTACGAATTC+AGG + tig0020311:13549-13568 None:intergenic 40.0%
AGGTCTAGTTGTTGCTGTAT+GGG - tig0020311:13696-13715 Msa1379760:intron 40.0%
GAAAATGCCATTACCAGTCT+TGG - tig0020311:13732-13751 Msa1379760:intron 40.0%
!! TGAGAATCCTTAAGTTGGCA+CGG + tig0020311:13780-13799 None:intergenic 40.0%
!! TGGCAAAGGTAGTGTTGATT+AGG + tig0020311:14080-14099 None:intergenic 40.0%
TAATCAACACTACCTTTGCC+AGG - tig0020311:14079-14098 Msa1379760:intron 40.0%
GTACTTCAAATACCTGGCAA+AGG + tig0020311:14094-14113 None:intergenic 40.0%
GGTCAAGTACTTCAAATACC+TGG + tig0020311:14100-14119 None:intergenic 40.0%
! AAAAGCACAATGTGAGGGAT+TGG - tig0020311:14133-14152 Msa1379760:intron 40.0%
! TCGTGTTATTGCATCCAACA+AGG - tig0020311:14158-14177 Msa1379760:intron 40.0%
ATAGATATTGCGGTCCTTGT+TGG + tig0020311:14175-14194 None:intergenic 40.0%
CTTCAACATTGCTGAGAATG+AGG - tig0020311:14206-14225 Msa1379760:intron 40.0%
! ATCTTGAGGCATTCTCCATT+AGG - tig0020311:14260-14279 Msa1379760:CDS 40.0%
!!! AACCCTAGTTTTGCATCATC+AGG - tig0020311:13010-13029 Msa1379760:three_prime_UTR 40.0%
! CTTCCTGATGATGCAAAACT+AGG + tig0020311:13016-13035 None:intergenic 40.0%
! GTTTTGCATCATCAGGAAGA+AGG - tig0020311:13017-13036 Msa1379760:three_prime_UTR 40.0%
TTTGCATCATCAGGAAGAAG+GGG - tig0020311:13019-13038 Msa1379760:three_prime_UTR 40.0%
GCCAGTTGAGGATAAGATTA+TGG - tig0020311:13117-13136 Msa1379760:three_prime_UTR 40.0%
CTTCAGGAGAGGATTAAAGT+TGG - tig0020311:13163-13182 Msa1379760:three_prime_UTR 40.0%
TTTGGAGAAATTGCTATCGG+AGG + tig0020311:13254-13273 None:intergenic 40.0%
CCGATAGCAATTTCTCCAAA+AGG - tig0020311:13254-13273 Msa1379760:exon 40.0%
TTAGTGTATGTTTGGATGGG+TGG - tig0020311:13497-13516 Msa1379760:intron 40.0%
TGGGAAAACCTACGAATTCA+GGG + tig0020311:13548-13567 None:intergenic 40.0%
TTGGGAAAACCTACGAATTC+AGG + tig0020311:13549-13568 None:intergenic 40.0%
AGGTCTAGTTGTTGCTGTAT+GGG - tig0020311:13696-13715 Msa1379760:intron 40.0%
GAAAATGCCATTACCAGTCT+TGG - tig0020311:13732-13751 Msa1379760:intron 40.0%
!! TGAGAATCCTTAAGTTGGCA+CGG + tig0020311:13780-13799 None:intergenic 40.0%
!! TGGCAAAGGTAGTGTTGATT+AGG + tig0020311:14080-14099 None:intergenic 40.0%
TAATCAACACTACCTTTGCC+AGG - tig0020311:14079-14098 Msa1379760:intron 40.0%
GTACTTCAAATACCTGGCAA+AGG + tig0020311:14094-14113 None:intergenic 40.0%
GGTCAAGTACTTCAAATACC+TGG + tig0020311:14100-14119 None:intergenic 40.0%
! AAAAGCACAATGTGAGGGAT+TGG - tig0020311:14133-14152 Msa1379760:intron 40.0%
! TCGTGTTATTGCATCCAACA+AGG - tig0020311:14158-14177 Msa1379760:intron 40.0%
ATAGATATTGCGGTCCTTGT+TGG + tig0020311:14175-14194 None:intergenic 40.0%
CTTCAACATTGCTGAGAATG+AGG - tig0020311:14206-14225 Msa1379760:intron 40.0%
! ATCTTGAGGCATTCTCCATT+AGG - tig0020311:14260-14279 Msa1379760:CDS 40.0%
!!! ACTCGGGAGGTTTTGGATTA+CGG - tig0020311:12986-13005 Msa1379760:three_prime_UTR 45.0%
TTGCATCATCAGGAAGAAGG+GGG - tig0020311:13020-13039 Msa1379760:three_prime_UTR 45.0%
AGTCTCAACGCGAAAATGAG+CGG - tig0020311:13046-13065 Msa1379760:three_prime_UTR 45.0%
GGAGTGAAGGGTAAGAAGAA+GGG - tig0020311:13067-13086 Msa1379760:three_prime_UTR 45.0%
TTCCCTGGAGAAGTTTCTTC+AGG - tig0020311:13147-13166 Msa1379760:three_prime_UTR 45.0%
CTCCTGAAGAAACTTCTCCA+GGG + tig0020311:13152-13171 None:intergenic 45.0%
TCTCCTGAAGAAACTTCTCC+AGG + tig0020311:13153-13172 None:intergenic 45.0%
TGGAGAAGTTTCTTCAGGAG+AGG - tig0020311:13152-13171 Msa1379760:three_prime_UTR 45.0%
CAGGAGAGGATTAAAGTTGG+TGG - tig0020311:13166-13185 Msa1379760:three_prime_UTR 45.0%
ATCGGAGGTAACAGTGATCT+TGG + tig0020311:13239-13258 None:intergenic 45.0%
ACAGCAACAACTAGACCTCA+CGG + tig0020311:13694-13713 None:intergenic 45.0%
GAGGTCTAGTTGTTGCTGTA+TGG - tig0020311:13695-13714 Msa1379760:intron 45.0%
TCACAAGCCAAGACTGGTAA+TGG + tig0020311:13742-13761 None:intergenic 45.0%
CAAACATCACAAGCCAAGAC+TGG + tig0020311:13748-13767 None:intergenic 45.0%
!! GAGAATCCTTAAGTTGGCAC+GGG + tig0020311:13779-13798 None:intergenic 45.0%
!! ACTAGACAATAGTGGACACC+AGG + tig0020311:13848-13867 None:intergenic 45.0%
TTCTGGTGCAGTTACTGAAC+TGG - tig0020311:13904-13923 Msa1379760:intron 45.0%
! TTGAGGCATTCTCCATTAGG+TGG - tig0020311:14263-14282 Msa1379760:CDS 45.0%
!!! ACTCGGGAGGTTTTGGATTA+CGG - tig0020311:12986-13005 Msa1379760:three_prime_UTR 45.0%
TTGCATCATCAGGAAGAAGG+GGG - tig0020311:13020-13039 Msa1379760:three_prime_UTR 45.0%
AGTCTCAACGCGAAAATGAG+CGG - tig0020311:13046-13065 Msa1379760:three_prime_UTR 45.0%
GGAGTGAAGGGTAAGAAGAA+GGG - tig0020311:13067-13086 Msa1379760:three_prime_UTR 45.0%
TTCCCTGGAGAAGTTTCTTC+AGG - tig0020311:13147-13166 Msa1379760:three_prime_UTR 45.0%
CTCCTGAAGAAACTTCTCCA+GGG + tig0020311:13152-13171 None:intergenic 45.0%
TCTCCTGAAGAAACTTCTCC+AGG + tig0020311:13153-13172 None:intergenic 45.0%
TGGAGAAGTTTCTTCAGGAG+AGG - tig0020311:13152-13171 Msa1379760:three_prime_UTR 45.0%
CAGGAGAGGATTAAAGTTGG+TGG - tig0020311:13166-13185 Msa1379760:three_prime_UTR 45.0%
ATCGGAGGTAACAGTGATCT+TGG + tig0020311:13239-13258 None:intergenic 45.0%
ACAGCAACAACTAGACCTCA+CGG + tig0020311:13694-13713 None:intergenic 45.0%
GAGGTCTAGTTGTTGCTGTA+TGG - tig0020311:13695-13714 Msa1379760:intron 45.0%
TCACAAGCCAAGACTGGTAA+TGG + tig0020311:13742-13761 None:intergenic 45.0%
CAAACATCACAAGCCAAGAC+TGG + tig0020311:13748-13767 None:intergenic 45.0%
!! GAGAATCCTTAAGTTGGCAC+GGG + tig0020311:13779-13798 None:intergenic 45.0%
!! ACTAGACAATAGTGGACACC+AGG + tig0020311:13848-13867 None:intergenic 45.0%
TTCTGGTGCAGTTACTGAAC+TGG - tig0020311:13904-13923 Msa1379760:intron 45.0%
! TTGAGGCATTCTCCATTAGG+TGG - tig0020311:14263-14282 Msa1379760:CDS 45.0%
GCGAAAATGAGCGGAGTGAA+GGG - tig0020311:13055-13074 Msa1379760:three_prime_UTR 50.0%
CGGAGTGAAGGGTAAGAAGA+AGG - tig0020311:13066-13085 Msa1379760:three_prime_UTR 50.0%
GATTATGGACATCGCTTCCC+TGG - tig0020311:13132-13151 Msa1379760:three_prime_UTR 50.0%
CGTTAGCACCCTGAATTCGT+AGG - tig0020311:13537-13556 Msa1379760:intron 50.0%
TGCATTCCCGTGCCAACTTA+AGG - tig0020311:13770-13789 Msa1379760:intron 50.0%
!! CTGCTCTGGGAACTCGAATT+TGG + tig0020311:14510-14529 None:intergenic 50.0%
! CAAATTCGAGTTCCCAGAGC+AGG - tig0020311:14508-14527 Msa1379760:five_prime_UTR 50.0%
GCGAAAATGAGCGGAGTGAA+GGG - tig0020311:13055-13074 Msa1379760:three_prime_UTR 50.0%
CGGAGTGAAGGGTAAGAAGA+AGG - tig0020311:13066-13085 Msa1379760:three_prime_UTR 50.0%
GATTATGGACATCGCTTCCC+TGG - tig0020311:13132-13151 Msa1379760:three_prime_UTR 50.0%
CGTTAGCACCCTGAATTCGT+AGG - tig0020311:13537-13556 Msa1379760:intron 50.0%
TGCATTCCCGTGCCAACTTA+AGG - tig0020311:13770-13789 Msa1379760:intron 50.0%
!! CTGCTCTGGGAACTCGAATT+TGG + tig0020311:14510-14529 None:intergenic 50.0%
! CAAATTCGAGTTCCCAGAGC+AGG - tig0020311:14508-14527 Msa1379760:five_prime_UTR 50.0%
CGCGAAAATGAGCGGAGTGA+AGG - tig0020311:13054-13073 Msa1379760:three_prime_UTR 55.0%
GGTGGTAAAGCTGGTGCTCT+CGG - tig0020311:13184-13203 Msa1379760:three_prime_UTR 55.0%
CGCGAAAATGAGCGGAGTGA+AGG - tig0020311:13054-13073 Msa1379760:three_prime_UTR 55.0%
GGTGGTAAAGCTGGTGCTCT+CGG - tig0020311:13184-13203 Msa1379760:three_prime_UTR 55.0%
CGATTGCGCGAAGCCAGTTG+AGG - tig0020311:13105-13124 Msa1379760:three_prime_UTR 60.0%
CGATTGCGCGAAGCCAGTTG+AGG - tig0020311:13105-13124 Msa1379760:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0020311 gene 12975 14537 12975 ID=Msa1379760;Name=Msa1379760
tig0020311 mRNA 12975 14537 12975 ID=Msa1379760-mRNA-1;Parent=Msa1379760;Name=Msa1379760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|2|292|119
tig0020311 exon 12975 13411 12975 ID=Msa1379760-mRNA-1:exon:6803;Parent=Msa1379760-mRNA-1
tig0020311 exon 14237 14537 14237 ID=Msa1379760-mRNA-1:exon:6802;Parent=Msa1379760-mRNA-1
tig0020311 five_prime_UTR 14452 14537 14452 ID=Msa1379760-mRNA-1:five_prime_utr;Parent=Msa1379760-mRNA-1
tig0020311 CDS 14237 14451 14237 ID=Msa1379760-mRNA-1:cds;Parent=Msa1379760-mRNA-1
tig0020311 CDS 13267 13411 13267 ID=Msa1379760-mRNA-1:cds;Parent=Msa1379760-mRNA-1
tig0020311 three_prime_UTR 12975 13266 12975 ID=Msa1379760-mRNA-1:three_prime_utr;Parent=Msa1379760-mRNA-1
Gene Sequence

>Msa1379760

ATGAGCGGAGTGAAGGGTAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCGCGAAGCCAGTTGAGGATAAGATTATGGACATCGCTTCCCTGGAGAAGTTTCTTCAGGAGAGGATTAAAGTTGGTGGTAAAGCTGGTGCTCTCGGTGATTCCGTTACTGTTACTCGTGACAAATCCAAGATCACTGTTACCTCCGATAGCAATTTCTCCAAAAGGTATTTGAAGTACTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGTGTTATTGCATCCAACAAGGACCGCAATATCTATGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAAGATGAAGACTAA

Protein sequence

>Msa1379760

MSGVKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEGEDED*