AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0786270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786270 MtrunA17_Chr5g0443371 98.392 311 5 0 5 315 1 311 0.0 588
Msa0786270 MtrunA17_Chr5g0396121 31.333 300 124 9 16 315 3 220 3.12e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786270 AT1G06530.1 39.098 266 153 2 26 291 37 293 8.93e-42 147
Msa0786270 AT3G58840.2 35.625 320 186 7 5 311 1 313 6.01e-34 127
Msa0786270 AT3G58840.1 35.625 320 186 7 5 311 1 313 6.01e-34 127

Find 120 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAGCTTGTTTGGAATT+TGG 0.203691 5_2:+71697353 Msa0786270:three_prime_UTR
AGGAGAGGAATAAGAGGATT+AGG 0.207628 5_2:+71696610 Msa0786270:CDS
CTCGAGGAAGTTGGGGAGTC+TGG 0.244504 5_2:+71696837 Msa0786270:CDS
TGAGGCGAGGGTGAAGGATT+TGG 0.263636 5_2:+71696551 Msa0786270:CDS
GTCTTTGTTTATAGCTTGTT+TGG 0.278942 5_2:+71697346 Msa0786270:three_prime_UTR
ATGAAATAATGATGCTTCTA+TGG 0.289187 5_2:+71697134 Msa0786270:three_prime_UTR
AACTTTGACATATATCAAAA+AGG 0.299347 5_2:-71697172 None:intergenic
TAGAAACAAGGTTGAGGAAT+TGG 0.300679 5_2:+71696689 Msa0786270:CDS
GGAGAGGAATAAGAGGATTA+GGG 0.313017 5_2:+71696611 Msa0786270:CDS
TTCAATTGCTCGAGGAAGTT+GGG 0.338623 5_2:+71696829 Msa0786270:CDS
GTTGAATGAGAAACTGAGTT+TGG 0.366048 5_2:+71696752 Msa0786270:CDS
GGAGAAGGAGGGTAGGGTTG+AGG 0.378962 5_2:+71696482 Msa0786270:CDS
GGAGGGTAGGGTTGAGGTGT+TGG 0.380355 5_2:+71696488 Msa0786270:CDS
GGAGATGAAGAAGGAGGCTG+AGG 0.381045 5_2:+71696440 Msa0786270:CDS
GAAGGAGGCTGAGGGTTTGA+AGG 0.382401 5_2:+71696449 Msa0786270:CDS
GAATAAGAGGATTAGGGTTG+AGG 0.391880 5_2:+71696617 Msa0786270:CDS
AGAAAGATGAGGCAGGGGAT+TGG 0.392543 5_2:+71696730 Msa0786270:CDS
ATTGTCGGTAGAGAGATAAA+TGG 0.393839 5_2:+71696897 Msa0786270:CDS
TGGCATACTGGTTTGGTTGT+TGG 0.397767 5_2:+71697194 Msa0786270:three_prime_UTR
CCTGCTCCCGCTGCTACAAT+TGG 0.398988 5_2:-71696957 None:intergenic
TTTGAAGGAGAAGGAGGGTA+GGG 0.399746 5_2:+71696476 Msa0786270:CDS
ATATGTCAAAGTTGGCATAC+TGG 0.402411 5_2:+71697182 Msa0786270:three_prime_UTR
TCTGATTAACTGCAGTTACT+AGG 0.404546 5_2:+71697260 Msa0786270:three_prime_UTR
AATTGGTGTTCTTGAGATGA+AGG 0.410301 5_2:+71696581 Msa0786270:CDS
GATGGAAGAACTGAGGAGTA+AGG 0.423173 5_2:+71696257 Msa0786270:CDS
AGCAATAACCTCAGCCGCCT+TGG 0.423197 5_2:-71696343 None:intergenic
AGATTGAGGAGAGGAATAAG+AGG 0.425346 5_2:+71696604 Msa0786270:CDS
AAGGATTTGGAGAAGAGAAT+TGG 0.427858 5_2:+71696564 Msa0786270:CDS
GAGTAAGGGTGAGGAGATGA+GGG 0.430659 5_2:+71696272 Msa0786270:CDS
TTGTCGGTAGAGAGATAAAT+GGG 0.434698 5_2:+71696898 Msa0786270:CDS
GGAGAAGGAGAGAGATGAAT+TGG 0.435084 5_2:+71696185 Msa0786270:CDS
TCTTGAGATGAAGGAGATTG+AGG 0.436304 5_2:+71696590 Msa0786270:CDS
GTTCAATTGCTCGAGGAAGT+TGG 0.436709 5_2:+71696828 Msa0786270:CDS
GAGAAGGATAGGGAAATTGA+TGG 0.440189 5_2:+71696663 Msa0786270:CDS
TGAGGTGTTGGTGAAGGAAG+TGG 0.440979 5_2:+71696500 Msa0786270:CDS
GGAGTAAGGGTGAGGAGATG+AGG 0.442860 5_2:+71696271 Msa0786270:CDS
ATACGATTGGTGAGAAGGAT+AGG 0.449768 5_2:+71696652 Msa0786270:CDS
TCAAAGTTGGCATACTGGTT+TGG 0.459891 5_2:+71697187 Msa0786270:three_prime_UTR
GGAGGCTGAGGGTTTGAAGG+AGG 0.465983 5_2:+71696452 Msa0786270:CDS
CGGCTGAGGTTATTGCTGCT+AGG 0.470057 5_2:+71696349 Msa0786270:CDS
TAGGGTTGAGGTGTTGGTGA+AGG 0.473133 5_2:+71696494 Msa0786270:CDS
GGCTGAGGTTATTGCTGCTA+GGG 0.474814 5_2:+71696350 Msa0786270:CDS
TGGTTGTTGGTTGCTTGTTG+AGG 0.481420 5_2:+71697207 Msa0786270:three_prime_UTR
GAAGATCTCGGCGTTGGAGA+AGG 0.483102 5_2:+71696170 Msa0786270:CDS
CAAGAAGTTGACGCTGGAGA+TGG 0.485347 5_2:+71696239 Msa0786270:CDS
GATGCAGCATGATATGATTA+CGG 0.487739 5_2:+71696401 Msa0786270:CDS
GGTTGAGAAGTCGCAAGATT+CGG 0.492629 5_2:+71696320 Msa0786270:CDS
TAAGAGGATTAGGGTTGAGG+AGG 0.493002 5_2:+71696620 Msa0786270:CDS
CAGTGGCCAATTGTAGCAGC+GGG 0.493163 5_2:+71696951 Msa0786270:CDS
AGAACTGAGGAGTAAGGGTG+AGG 0.500630 5_2:+71696263 Msa0786270:CDS
CCAATTGTAGCAGCGGGAGC+AGG 0.504697 5_2:+71696957 Msa0786270:CDS
AGATTCGGCCAAGGCGGCTG+AGG 0.505642 5_2:+71696335 Msa0786270:CDS
GAATCTGAGGAGAAAGCAAA+GGG 0.509947 5_2:+71696789 Msa0786270:CDS
TGATTACGGATATGAGTGCT+GGG 0.510378 5_2:+71696415 Msa0786270:CDS
TTAGGGTTGAGGAGGAACTG+AGG 0.512287 5_2:+71696628 Msa0786270:CDS
TGCTGGGGAGGAGATGAAGA+AGG 0.512356 5_2:+71696431 Msa0786270:CDS
GAAGGCGAAAGCGGAGAGTG+AGG 0.516671 5_2:+71696533 Msa0786270:CDS
GGAAGTGGAAGGTTTGAAGA+AGG 0.521579 5_2:+71696515 Msa0786270:CDS
TGGGATGCATGGTGAAGAGA+AGG 0.524269 5_2:+71696917 Msa0786270:CDS
ATGGAAGAACTGAGGAGTAA+GGG 0.525619 5_2:+71696258 Msa0786270:CDS
ATGATTACGGATATGAGTGC+TGG 0.527596 5_2:+71696414 Msa0786270:CDS
GCAAGAGAATAACGAGAAGA+AGG 0.527814 5_2:+71696209 Msa0786270:CDS
GGAGAGTGAGGCGAGGGTGA+AGG 0.528495 5_2:+71696545 Msa0786270:CDS
AGACACACAACAAGGGGACG+TGG 0.531054 5_2:-71697398 None:intergenic
TAGGGTTGAGGAGGAACTGA+GGG 0.534680 5_2:+71696629 Msa0786270:CDS
GAGGGATACGATTGGTGAGA+AGG 0.535354 5_2:+71696647 Msa0786270:CDS
GCTGAGAAGAAAGATGAGGC+AGG 0.537405 5_2:+71696723 Msa0786270:CDS
GAAAGCGGAGAGTGAGGCGA+GGG 0.538617 5_2:+71696539 Msa0786270:CDS
TACGATTGGTGAGAAGGATA+GGG 0.539661 5_2:+71696653 Msa0786270:CDS
TCGAGGAAGTTGGGGAGTCT+GGG 0.540080 5_2:+71696838 Msa0786270:CDS
TGATCAGTATGAGGATCAAT+CGG 0.548497 5_2:+71696143 Msa0786270:CDS
GTTGAGGAATTGGAGAAGGT+TGG 0.550217 5_2:+71696699 Msa0786270:CDS
AGATGAAGGAGATTGAGGAG+AGG 0.557636 5_2:+71696595 Msa0786270:CDS
CAAGGTTGAGGAATTGGAGA+AGG 0.559701 5_2:+71696695 Msa0786270:CDS
GGTTATTGCTGCTAGGGCGG+CGG 0.561674 5_2:+71696356 Msa0786270:CDS
GCGGATGACGGTGTTTCAAA+CGG 0.563812 5_2:+71696111 Msa0786270:CDS
AGAATCTGAGGAGAAAGCAA+AGG 0.564574 5_2:+71696788 Msa0786270:CDS
GAAGGCACTTAGAGAATCTG+AGG 0.564898 5_2:+71696776 Msa0786270:CDS
GGTGACGAAGATCTCGGCGT+TGG 0.567432 5_2:+71696164 Msa0786270:CDS
CTGTGATGTGGGAATACGAA+TGG 0.568656 5_2:+71697049 Msa0786270:three_prime_UTR
ATACGAATGGGAGGGTGTAG+AGG 0.577093 5_2:+71697062 Msa0786270:three_prime_UTR
TCAATTGCTCGAGGAAGTTG+GGG 0.578973 5_2:+71696830 Msa0786270:CDS
CTGAGAAGAAAGATGAGGCA+GGG 0.581312 5_2:+71696724 Msa0786270:CDS
TTTCTTAGACACACAACAAG+GGG 0.581646 5_2:-71697404 None:intergenic
TGAGAAGAAAGATGAGGCAG+GGG 0.584420 5_2:+71696725 Msa0786270:CDS
TGAGAAACTGAGTTTGGAGA+AGG 0.588145 5_2:+71696758 Msa0786270:CDS
TACGGATATGAGTGCTGGGG+AGG 0.589635 5_2:+71696419 Msa0786270:CDS
GAATTAACAATGGCGGATGA+CGG 0.590070 5_2:+71696099 Msa0786270:intron
GAGATGAAGAAGGAGGCTGA+GGG 0.596052 5_2:+71696441 Msa0786270:CDS
ATTTGCAGAATTAACAATGG+CGG 0.604075 5_2:+71696092 Msa0786270:intron
TCAATCGGTGACGAAGATCT+CGG 0.608769 5_2:+71696158 Msa0786270:CDS
TGTTGTTGATGATCAGTATG+AGG 0.610760 5_2:+71696134 Msa0786270:CDS
TTTATTTGCAGAATTAACAA+TGG 0.613544 5_2:+71696089 Msa0786270:intron
AGAGAGATAAATGGGATGCA+TGG 0.614344 5_2:+71696906 Msa0786270:CDS
GGAAATCAAGAAGTTGACGC+TGG 0.614782 5_2:+71696233 Msa0786270:CDS
ATCTTGAGACGCAGATTGCG+AGG 0.614915 5_2:+71696379 Msa0786270:CDS
ACAAATTGTTCAATTGCTCG+AGG 0.616567 5_2:+71696821 Msa0786270:CDS
GAGGAACTGAGGGATACGAT+TGG 0.618110 5_2:+71696639 Msa0786270:CDS
GACACACAACAAGGGGACGT+GGG 0.618122 5_2:-71697397 None:intergenic
AGGTTTGAAGAAGGCGAAAG+CGG 0.627720 5_2:+71696524 Msa0786270:CDS
AGCAGCGGGAGCAGGAACTA+CGG 0.628668 5_2:+71696965 Msa0786270:CDS
CGAAAGCGGAGAGTGAGGCG+AGG 0.629203 5_2:+71696538 Msa0786270:CDS
AATTTCTTAGACACACAACA+AGG 0.629681 5_2:-71697406 None:intergenic
ATGTGGGAATACGAATGGGA+GGG 0.636002 5_2:+71697054 Msa0786270:three_prime_UTR
TGTGATGTGGGAATACGAAT+GGG 0.637931 5_2:+71697050 Msa0786270:three_prime_UTR
ACACACAACAAGGGGACGTG+GGG 0.640202 5_2:-71697396 None:intergenic
ATTTCTTAGACACACAACAA+GGG 0.642340 5_2:-71697405 None:intergenic
ATGTGTACTGCGCCAAACGA+AGG 0.642759 5_2:+71697018 Msa0786270:CDS
AGAGAATAACGAGAAGAAGG+AGG 0.646661 5_2:+71696212 Msa0786270:CDS
TGGTGCTGAGAAGAAAGATG+AGG 0.648321 5_2:+71696719 Msa0786270:CDS
GTCGCAAGATTCGGCCAAGG+CGG 0.649998 5_2:+71696329 Msa0786270:CDS
CGCTGGAGATGGAAGAACTG+AGG 0.651850 5_2:+71696250 Msa0786270:CDS
GCAGTGGCCAATTGTAGCAG+CGG 0.660360 5_2:+71696950 Msa0786270:CDS
GAAGTCGCAAGATTCGGCCA+AGG 0.661169 5_2:+71696326 Msa0786270:CDS
TGAGGTTATTGCTGCTAGGG+CGG 0.671369 5_2:+71696353 Msa0786270:CDS
GATGTGGGAATACGAATGGG+AGG 0.679758 5_2:+71697053 Msa0786270:three_prime_UTR
GATTGAAGAGATGCGTGATG+TGG 0.691213 5_2:+71696299 Msa0786270:CDS
TGGGGAGGAGATGAAGAAGG+AGG 0.692227 5_2:+71696434 Msa0786270:CDS
GTGTTGGTGAAGGAAGTGGA+AGG 0.705939 5_2:+71696504 Msa0786270:CDS
GATTACGGATATGAGTGCTG+GGG 0.731149 5_2:+71696416 Msa0786270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATTTTACATTCTATT+AGG - chr5_2:71697321-71697340 None:intergenic 15.0%
!!! TTTCAATTTTACATTCTATT+AGG - chr5_2:71697321-71697340 None:intergenic 15.0%
!!! TTTATGCTTTTTCAGAAAAA+AGG - chr5_2:71695718-71695737 None:intergenic 20.0%
!! TTTATTTGCAGAATTAACAA+TGG + chr5_2:71696089-71696108 Msa0786270:intron 20.0%
!! AACTTTGACATATATCAAAA+AGG - chr5_2:71697175-71697194 None:intergenic 20.0%
!!! TTTTTGATATATGTCAAAGT+TGG + chr5_2:71697174-71697193 Msa0786270:three_prime_UTR 20.0%
!!! TTTATGCTTTTTCAGAAAAA+AGG - chr5_2:71695718-71695737 None:intergenic 20.0%
!! TTTATTTGCAGAATTAACAA+TGG + chr5_2:71696089-71696108 Msa0786270:intron 20.0%
!! AACTTTGACATATATCAAAA+AGG - chr5_2:71697175-71697194 None:intergenic 20.0%
!!! TTTTTGATATATGTCAAAGT+TGG + chr5_2:71697174-71697193 Msa0786270:three_prime_UTR 20.0%
! TCGTGTATACAAAATCAAAA+CGG + chr5_2:71695597-71695616 Msa0786270:intron 25.0%
!!! CTTTTTCAGAAAAAAGGTAA+CGG - chr5_2:71695712-71695731 None:intergenic 25.0%
! GATAACCTTAGATTTATGAA+AGG - chr5_2:71695850-71695869 None:intergenic 25.0%
!! AATTTTCTGAGTGAATTTTC+CGG - chr5_2:71695892-71695911 None:intergenic 25.0%
!!! AATTGATGGTTTTAGAAACA+AGG + chr5_2:71696677-71696696 Msa0786270:CDS 25.0%
! ATGAAATAATGATGCTTCTA+TGG + chr5_2:71697134-71697153 Msa0786270:three_prime_UTR 25.0%
!!! TTTATAGCTTGTTTGGAATT+TGG + chr5_2:71697353-71697372 Msa0786270:three_prime_UTR 25.0%
! TCGTGTATACAAAATCAAAA+CGG + chr5_2:71695597-71695616 Msa0786270:intron 25.0%
!!! CTTTTTCAGAAAAAAGGTAA+CGG - chr5_2:71695712-71695731 None:intergenic 25.0%
! GATAACCTTAGATTTATGAA+AGG - chr5_2:71695850-71695869 None:intergenic 25.0%
!! AATTTTCTGAGTGAATTTTC+CGG - chr5_2:71695892-71695911 None:intergenic 25.0%
!!! AATTGATGGTTTTAGAAACA+AGG + chr5_2:71696677-71696696 Msa0786270:CDS 25.0%
! ATGAAATAATGATGCTTCTA+TGG + chr5_2:71697134-71697153 Msa0786270:three_prime_UTR 25.0%
!!! TTTATAGCTTGTTTGGAATT+TGG + chr5_2:71697353-71697372 Msa0786270:three_prime_UTR 25.0%
ATCAAAACGGTAGACAAAAA+AGG + chr5_2:71695610-71695629 Msa0786270:intron 30.0%
CTACACCTTTCATAAATCTA+AGG + chr5_2:71695842-71695861 Msa0786270:intron 30.0%
! ATTTTCTGAGTGAATTTTCC+GGG - chr5_2:71695891-71695910 None:intergenic 30.0%
ATTTGCAGAATTAACAATGG+CGG + chr5_2:71696092-71696111 Msa0786270:intron 30.0%
!! GTCTTTGTTTATAGCTTGTT+TGG + chr5_2:71697346-71697365 Msa0786270:three_prime_UTR 30.0%
ATTTCTTAGACACACAACAA+GGG - chr5_2:71697408-71697427 None:intergenic 30.0%
AATTTCTTAGACACACAACA+AGG - chr5_2:71697409-71697428 None:intergenic 30.0%
ATCAAAACGGTAGACAAAAA+AGG + chr5_2:71695610-71695629 Msa0786270:intron 30.0%
CTACACCTTTCATAAATCTA+AGG + chr5_2:71695842-71695861 Msa0786270:intron 30.0%
! ATTTTCTGAGTGAATTTTCC+GGG - chr5_2:71695891-71695910 None:intergenic 30.0%
ATTTGCAGAATTAACAATGG+CGG + chr5_2:71696092-71696111 Msa0786270:intron 30.0%
!! GTCTTTGTTTATAGCTTGTT+TGG + chr5_2:71697346-71697365 Msa0786270:three_prime_UTR 30.0%
ATTTCTTAGACACACAACAA+GGG - chr5_2:71697408-71697427 None:intergenic 30.0%
AATTTCTTAGACACACAACA+AGG - chr5_2:71697409-71697428 None:intergenic 30.0%
GAAATGTTGTTCTACGTGAA+TGG - chr5_2:71695680-71695699 None:intergenic 35.0%
!! TGTAGAAATGCGATGGATTA+GGG - chr5_2:71695827-71695846 None:intergenic 35.0%
! TTTTCTCTATCACACTTTCC+CGG + chr5_2:71695870-71695889 Msa0786270:intron 35.0%
! ATTTTCTCGCTTCACTCTTA+CGG + chr5_2:71695921-71695940 Msa0786270:intron 35.0%
!! TGTTGTTGATGATCAGTATG+AGG + chr5_2:71696134-71696153 Msa0786270:CDS 35.0%
TGATCAGTATGAGGATCAAT+CGG + chr5_2:71696143-71696162 Msa0786270:CDS 35.0%
GATGCAGCATGATATGATTA+CGG + chr5_2:71696401-71696420 Msa0786270:CDS 35.0%
AAGGATTTGGAGAAGAGAAT+TGG + chr5_2:71696564-71696583 Msa0786270:CDS 35.0%
! AATTGGTGTTCTTGAGATGA+AGG + chr5_2:71696581-71696600 Msa0786270:CDS 35.0%
!!! TGGTTTTAGAAACAAGGTTG+AGG + chr5_2:71696683-71696702 Msa0786270:CDS 35.0%
TAGAAACAAGGTTGAGGAAT+TGG + chr5_2:71696689-71696708 Msa0786270:CDS 35.0%
GTTGAATGAGAAACTGAGTT+TGG + chr5_2:71696752-71696771 Msa0786270:CDS 35.0%
ACAAATTGTTCAATTGCTCG+AGG + chr5_2:71696821-71696840 Msa0786270:CDS 35.0%
ATTGTCGGTAGAGAGATAAA+TGG + chr5_2:71696897-71696916 Msa0786270:CDS 35.0%
TTGTCGGTAGAGAGATAAAT+GGG + chr5_2:71696898-71696917 Msa0786270:CDS 35.0%
!!! AGAAGGATTTTAAGTTGCAG+TGG + chr5_2:71696934-71696953 Msa0786270:CDS 35.0%
ACAGAAAAATCACCTTCGTT+TGG - chr5_2:71697033-71697052 None:intergenic 35.0%
! AAGGTGATTTTTCTGTGATG+TGG + chr5_2:71697037-71697056 Msa0786270:exon 35.0%
! AGGTGATTTTTCTGTGATGT+GGG + chr5_2:71697038-71697057 Msa0786270:exon 35.0%
ATATGTCAAAGTTGGCATAC+TGG + chr5_2:71697182-71697201 Msa0786270:three_prime_UTR 35.0%
TCTGATTAACTGCAGTTACT+AGG + chr5_2:71697260-71697279 Msa0786270:three_prime_UTR 35.0%
TTTCTTAGACACACAACAAG+GGG - chr5_2:71697407-71697426 None:intergenic 35.0%
GAAATGTTGTTCTACGTGAA+TGG - chr5_2:71695680-71695699 None:intergenic 35.0%
!! TGTAGAAATGCGATGGATTA+GGG - chr5_2:71695827-71695846 None:intergenic 35.0%
! TTTTCTCTATCACACTTTCC+CGG + chr5_2:71695870-71695889 Msa0786270:intron 35.0%
! ATTTTCTCGCTTCACTCTTA+CGG + chr5_2:71695921-71695940 Msa0786270:intron 35.0%
!! TGTTGTTGATGATCAGTATG+AGG + chr5_2:71696134-71696153 Msa0786270:CDS 35.0%
TGATCAGTATGAGGATCAAT+CGG + chr5_2:71696143-71696162 Msa0786270:CDS 35.0%
GATGCAGCATGATATGATTA+CGG + chr5_2:71696401-71696420 Msa0786270:CDS 35.0%
AAGGATTTGGAGAAGAGAAT+TGG + chr5_2:71696564-71696583 Msa0786270:CDS 35.0%
! AATTGGTGTTCTTGAGATGA+AGG + chr5_2:71696581-71696600 Msa0786270:CDS 35.0%
!!! TGGTTTTAGAAACAAGGTTG+AGG + chr5_2:71696683-71696702 Msa0786270:CDS 35.0%
TAGAAACAAGGTTGAGGAAT+TGG + chr5_2:71696689-71696708 Msa0786270:CDS 35.0%
GTTGAATGAGAAACTGAGTT+TGG + chr5_2:71696752-71696771 Msa0786270:CDS 35.0%
ACAAATTGTTCAATTGCTCG+AGG + chr5_2:71696821-71696840 Msa0786270:CDS 35.0%
ATTGTCGGTAGAGAGATAAA+TGG + chr5_2:71696897-71696916 Msa0786270:CDS 35.0%
TTGTCGGTAGAGAGATAAAT+GGG + chr5_2:71696898-71696917 Msa0786270:CDS 35.0%
!!! AGAAGGATTTTAAGTTGCAG+TGG + chr5_2:71696934-71696953 Msa0786270:CDS 35.0%
ACAGAAAAATCACCTTCGTT+TGG - chr5_2:71697033-71697052 None:intergenic 35.0%
! AAGGTGATTTTTCTGTGATG+TGG + chr5_2:71697037-71697056 Msa0786270:exon 35.0%
! AGGTGATTTTTCTGTGATGT+GGG + chr5_2:71697038-71697057 Msa0786270:exon 35.0%
ATATGTCAAAGTTGGCATAC+TGG + chr5_2:71697182-71697201 Msa0786270:three_prime_UTR 35.0%
TCTGATTAACTGCAGTTACT+AGG + chr5_2:71697260-71697279 Msa0786270:three_prime_UTR 35.0%
TTTCTTAGACACACAACAAG+GGG - chr5_2:71697407-71697426 None:intergenic 35.0%
! TTTTCGATCGGGTATGGTAT+GGG - chr5_2:71695649-71695668 None:intergenic 40.0%
ATGTTGTTCTACGTGAATGG+TGG - chr5_2:71695677-71695696 None:intergenic 40.0%
! GTGTAGAAATGCGATGGATT+AGG - chr5_2:71695828-71695847 None:intergenic 40.0%
! TGAAAGGTGTAGAAATGCGA+TGG - chr5_2:71695834-71695853 None:intergenic 40.0%
GTAAGAGTGAAGCGAGAAAA+TGG - chr5_2:71695922-71695941 None:intergenic 40.0%
!! GAATTAACAATGGCGGATGA+CGG + chr5_2:71696099-71696118 Msa0786270:intron 40.0%
GCAAGAGAATAACGAGAAGA+AGG + chr5_2:71696209-71696228 Msa0786270:CDS 40.0%
AGAGAATAACGAGAAGAAGG+AGG + chr5_2:71696212-71696231 Msa0786270:CDS 40.0%
ATGGAAGAACTGAGGAGTAA+GGG + chr5_2:71696258-71696277 Msa0786270:CDS 40.0%
ATGATTACGGATATGAGTGC+TGG + chr5_2:71696414-71696433 Msa0786270:CDS 40.0%
TGATTACGGATATGAGTGCT+GGG + chr5_2:71696415-71696434 Msa0786270:CDS 40.0%
TCTTGAGATGAAGGAGATTG+AGG + chr5_2:71696590-71696609 Msa0786270:CDS 40.0%
AGATTGAGGAGAGGAATAAG+AGG + chr5_2:71696604-71696623 Msa0786270:CDS 40.0%
AGGAGAGGAATAAGAGGATT+AGG + chr5_2:71696610-71696629 Msa0786270:CDS 40.0%
GGAGAGGAATAAGAGGATTA+GGG + chr5_2:71696611-71696630 Msa0786270:CDS 40.0%
GAATAAGAGGATTAGGGTTG+AGG + chr5_2:71696617-71696636 Msa0786270:CDS 40.0%
ATACGATTGGTGAGAAGGAT+AGG + chr5_2:71696652-71696671 Msa0786270:CDS 40.0%
TACGATTGGTGAGAAGGATA+GGG + chr5_2:71696653-71696672 Msa0786270:CDS 40.0%
GAGAAGGATAGGGAAATTGA+TGG + chr5_2:71696663-71696682 Msa0786270:CDS 40.0%
TGAGAAACTGAGTTTGGAGA+AGG + chr5_2:71696758-71696777 Msa0786270:CDS 40.0%
AGAATCTGAGGAGAAAGCAA+AGG + chr5_2:71696788-71696807 Msa0786270:CDS 40.0%
GAATCTGAGGAGAAAGCAAA+GGG + chr5_2:71696789-71696808 Msa0786270:CDS 40.0%
TTCAATTGCTCGAGGAAGTT+GGG + chr5_2:71696829-71696848 Msa0786270:CDS 40.0%
GAAAAAGCTGCTGAGATTGT+CGG + chr5_2:71696882-71696901 Msa0786270:CDS 40.0%
AGAGAGATAAATGGGATGCA+TGG + chr5_2:71696906-71696925 Msa0786270:CDS 40.0%
TGTGATGTGGGAATACGAAT+GGG + chr5_2:71697050-71697069 Msa0786270:three_prime_UTR 40.0%
! TCAAAGTTGGCATACTGGTT+TGG + chr5_2:71697187-71697206 Msa0786270:three_prime_UTR 40.0%
! TTTTCGATCGGGTATGGTAT+GGG - chr5_2:71695649-71695668 None:intergenic 40.0%
ATGTTGTTCTACGTGAATGG+TGG - chr5_2:71695677-71695696 None:intergenic 40.0%
! GTGTAGAAATGCGATGGATT+AGG - chr5_2:71695828-71695847 None:intergenic 40.0%
! TGAAAGGTGTAGAAATGCGA+TGG - chr5_2:71695834-71695853 None:intergenic 40.0%
GTAAGAGTGAAGCGAGAAAA+TGG - chr5_2:71695922-71695941 None:intergenic 40.0%
!! GAATTAACAATGGCGGATGA+CGG + chr5_2:71696099-71696118 Msa0786270:intron 40.0%
GCAAGAGAATAACGAGAAGA+AGG + chr5_2:71696209-71696228 Msa0786270:CDS 40.0%
AGAGAATAACGAGAAGAAGG+AGG + chr5_2:71696212-71696231 Msa0786270:CDS 40.0%
ATGGAAGAACTGAGGAGTAA+GGG + chr5_2:71696258-71696277 Msa0786270:CDS 40.0%
ATGATTACGGATATGAGTGC+TGG + chr5_2:71696414-71696433 Msa0786270:CDS 40.0%
TGATTACGGATATGAGTGCT+GGG + chr5_2:71696415-71696434 Msa0786270:CDS 40.0%
TCTTGAGATGAAGGAGATTG+AGG + chr5_2:71696590-71696609 Msa0786270:CDS 40.0%
AGATTGAGGAGAGGAATAAG+AGG + chr5_2:71696604-71696623 Msa0786270:CDS 40.0%
AGGAGAGGAATAAGAGGATT+AGG + chr5_2:71696610-71696629 Msa0786270:CDS 40.0%
GGAGAGGAATAAGAGGATTA+GGG + chr5_2:71696611-71696630 Msa0786270:CDS 40.0%
GAATAAGAGGATTAGGGTTG+AGG + chr5_2:71696617-71696636 Msa0786270:CDS 40.0%
ATACGATTGGTGAGAAGGAT+AGG + chr5_2:71696652-71696671 Msa0786270:CDS 40.0%
TACGATTGGTGAGAAGGATA+GGG + chr5_2:71696653-71696672 Msa0786270:CDS 40.0%
GAGAAGGATAGGGAAATTGA+TGG + chr5_2:71696663-71696682 Msa0786270:CDS 40.0%
TGAGAAACTGAGTTTGGAGA+AGG + chr5_2:71696758-71696777 Msa0786270:CDS 40.0%
AGAATCTGAGGAGAAAGCAA+AGG + chr5_2:71696788-71696807 Msa0786270:CDS 40.0%
GAATCTGAGGAGAAAGCAAA+GGG + chr5_2:71696789-71696808 Msa0786270:CDS 40.0%
TTCAATTGCTCGAGGAAGTT+GGG + chr5_2:71696829-71696848 Msa0786270:CDS 40.0%
GAAAAAGCTGCTGAGATTGT+CGG + chr5_2:71696882-71696901 Msa0786270:CDS 40.0%
AGAGAGATAAATGGGATGCA+TGG + chr5_2:71696906-71696925 Msa0786270:CDS 40.0%
TGTGATGTGGGAATACGAAT+GGG + chr5_2:71697050-71697069 Msa0786270:three_prime_UTR 40.0%
! TCAAAGTTGGCATACTGGTT+TGG + chr5_2:71697187-71697206 Msa0786270:three_prime_UTR 40.0%
! CGGGTATGGTATGGGTTAAT+GGG - chr5_2:71695641-71695660 None:intergenic 45.0%
! TCGGGTATGGTATGGGTTAA+TGG - chr5_2:71695642-71695661 None:intergenic 45.0%
! GTTTTCGATCGGGTATGGTA+TGG - chr5_2:71695650-71695669 None:intergenic 45.0%
!!! ATGGTGGTGTCGTTTTCGAT+CGG - chr5_2:71695661-71695680 None:intergenic 45.0%
TCAATCGGTGACGAAGATCT+CGG + chr5_2:71696158-71696177 Msa0786270:CDS 45.0%
GGAGAAGGAGAGAGATGAAT+TGG + chr5_2:71696185-71696204 Msa0786270:CDS 45.0%
GGAAATCAAGAAGTTGACGC+TGG + chr5_2:71696233-71696252 Msa0786270:CDS 45.0%
GATGGAAGAACTGAGGAGTA+AGG + chr5_2:71696257-71696276 Msa0786270:CDS 45.0%
GATTGAAGAGATGCGTGATG+TGG + chr5_2:71696299-71696318 Msa0786270:CDS 45.0%
GGTTGAGAAGTCGCAAGATT+CGG + chr5_2:71696320-71696339 Msa0786270:CDS 45.0%
! GATTACGGATATGAGTGCTG+GGG + chr5_2:71696416-71696435 Msa0786270:CDS 45.0%
!! GGGTTTGAAGGAGGTTTTGA+AGG + chr5_2:71696461-71696480 Msa0786270:CDS 45.0%
!!! GAAGGAGGTTTTGAAGGAGA+AGG + chr5_2:71696467-71696486 Msa0786270:CDS 45.0%
!!! GAGGTTTTGAAGGAGAAGGA+GGG + chr5_2:71696471-71696490 Msa0786270:CDS 45.0%
!! TTTTGAAGGAGAAGGAGGGT+AGG + chr5_2:71696475-71696494 Msa0786270:CDS 45.0%
TTTGAAGGAGAAGGAGGGTA+GGG + chr5_2:71696476-71696495 Msa0786270:CDS 45.0%
GGAAGTGGAAGGTTTGAAGA+AGG + chr5_2:71696515-71696534 Msa0786270:CDS 45.0%
AGGTTTGAAGAAGGCGAAAG+CGG + chr5_2:71696524-71696543 Msa0786270:CDS 45.0%
AGATGAAGGAGATTGAGGAG+AGG + chr5_2:71696595-71696614 Msa0786270:CDS 45.0%
TAAGAGGATTAGGGTTGAGG+AGG + chr5_2:71696620-71696639 Msa0786270:CDS 45.0%
CAAGGTTGAGGAATTGGAGA+AGG + chr5_2:71696695-71696714 Msa0786270:CDS 45.0%
GTTGAGGAATTGGAGAAGGT+TGG + chr5_2:71696699-71696718 Msa0786270:CDS 45.0%
! TGGTGCTGAGAAGAAAGATG+AGG + chr5_2:71696719-71696738 Msa0786270:CDS 45.0%
CTGAGAAGAAAGATGAGGCA+GGG + chr5_2:71696724-71696743 Msa0786270:CDS 45.0%
TGAGAAGAAAGATGAGGCAG+GGG + chr5_2:71696725-71696744 Msa0786270:CDS 45.0%
!! GAAGGCACTTAGAGAATCTG+AGG + chr5_2:71696776-71696795 Msa0786270:CDS 45.0%
GTTCAATTGCTCGAGGAAGT+TGG + chr5_2:71696828-71696847 Msa0786270:CDS 45.0%
TCAATTGCTCGAGGAAGTTG+GGG + chr5_2:71696830-71696849 Msa0786270:CDS 45.0%
! GGAACTACGGTAGCAGTTTT+TGG + chr5_2:71696978-71696997 Msa0786270:CDS 45.0%
CTGTGATGTGGGAATACGAA+TGG + chr5_2:71697049-71697068 Msa0786270:three_prime_UTR 45.0%
ATGTGGGAATACGAATGGGA+GGG + chr5_2:71697054-71697073 Msa0786270:three_prime_UTR 45.0%
!! TGGCATACTGGTTTGGTTGT+TGG + chr5_2:71697194-71697213 Msa0786270:three_prime_UTR 45.0%
! TGGTTGTTGGTTGCTTGTTG+AGG + chr5_2:71697207-71697226 Msa0786270:three_prime_UTR 45.0%
! CGGGTATGGTATGGGTTAAT+GGG - chr5_2:71695641-71695660 None:intergenic 45.0%
! TCGGGTATGGTATGGGTTAA+TGG - chr5_2:71695642-71695661 None:intergenic 45.0%
! GTTTTCGATCGGGTATGGTA+TGG - chr5_2:71695650-71695669 None:intergenic 45.0%
!!! ATGGTGGTGTCGTTTTCGAT+CGG - chr5_2:71695661-71695680 None:intergenic 45.0%
TCAATCGGTGACGAAGATCT+CGG + chr5_2:71696158-71696177 Msa0786270:CDS 45.0%
GGAGAAGGAGAGAGATGAAT+TGG + chr5_2:71696185-71696204 Msa0786270:CDS 45.0%
GGAAATCAAGAAGTTGACGC+TGG + chr5_2:71696233-71696252 Msa0786270:CDS 45.0%
GATGGAAGAACTGAGGAGTA+AGG + chr5_2:71696257-71696276 Msa0786270:CDS 45.0%
GATTGAAGAGATGCGTGATG+TGG + chr5_2:71696299-71696318 Msa0786270:CDS 45.0%
GGTTGAGAAGTCGCAAGATT+CGG + chr5_2:71696320-71696339 Msa0786270:CDS 45.0%
! GATTACGGATATGAGTGCTG+GGG + chr5_2:71696416-71696435 Msa0786270:CDS 45.0%
!! GGGTTTGAAGGAGGTTTTGA+AGG + chr5_2:71696461-71696480 Msa0786270:CDS 45.0%
!!! GAAGGAGGTTTTGAAGGAGA+AGG + chr5_2:71696467-71696486 Msa0786270:CDS 45.0%
!!! GAGGTTTTGAAGGAGAAGGA+GGG + chr5_2:71696471-71696490 Msa0786270:CDS 45.0%
!! TTTTGAAGGAGAAGGAGGGT+AGG + chr5_2:71696475-71696494 Msa0786270:CDS 45.0%
TTTGAAGGAGAAGGAGGGTA+GGG + chr5_2:71696476-71696495 Msa0786270:CDS 45.0%
GGAAGTGGAAGGTTTGAAGA+AGG + chr5_2:71696515-71696534 Msa0786270:CDS 45.0%
AGGTTTGAAGAAGGCGAAAG+CGG + chr5_2:71696524-71696543 Msa0786270:CDS 45.0%
AGATGAAGGAGATTGAGGAG+AGG + chr5_2:71696595-71696614 Msa0786270:CDS 45.0%
TAAGAGGATTAGGGTTGAGG+AGG + chr5_2:71696620-71696639 Msa0786270:CDS 45.0%
CAAGGTTGAGGAATTGGAGA+AGG + chr5_2:71696695-71696714 Msa0786270:CDS 45.0%
GTTGAGGAATTGGAGAAGGT+TGG + chr5_2:71696699-71696718 Msa0786270:CDS 45.0%
! TGGTGCTGAGAAGAAAGATG+AGG + chr5_2:71696719-71696738 Msa0786270:CDS 45.0%
CTGAGAAGAAAGATGAGGCA+GGG + chr5_2:71696724-71696743 Msa0786270:CDS 45.0%
TGAGAAGAAAGATGAGGCAG+GGG + chr5_2:71696725-71696744 Msa0786270:CDS 45.0%
!! GAAGGCACTTAGAGAATCTG+AGG + chr5_2:71696776-71696795 Msa0786270:CDS 45.0%
GTTCAATTGCTCGAGGAAGT+TGG + chr5_2:71696828-71696847 Msa0786270:CDS 45.0%
TCAATTGCTCGAGGAAGTTG+GGG + chr5_2:71696830-71696849 Msa0786270:CDS 45.0%
! GGAACTACGGTAGCAGTTTT+TGG + chr5_2:71696978-71696997 Msa0786270:CDS 45.0%
CTGTGATGTGGGAATACGAA+TGG + chr5_2:71697049-71697068 Msa0786270:three_prime_UTR 45.0%
ATGTGGGAATACGAATGGGA+GGG + chr5_2:71697054-71697073 Msa0786270:three_prime_UTR 45.0%
!! TGGCATACTGGTTTGGTTGT+TGG + chr5_2:71697194-71697213 Msa0786270:three_prime_UTR 45.0%
! TGGTTGTTGGTTGCTTGTTG+AGG + chr5_2:71697207-71697226 Msa0786270:three_prime_UTR 45.0%
!!! GTGTCGTTTTCGATCGGGTA+TGG - chr5_2:71695655-71695674 None:intergenic 50.0%
!!! TGGTGGTGTCGTTTTCGATC+GGG - chr5_2:71695660-71695679 None:intergenic 50.0%
! GCGGATGACGGTGTTTCAAA+CGG + chr5_2:71696111-71696130 Msa0786270:CDS 50.0%
CAAGAAGTTGACGCTGGAGA+TGG + chr5_2:71696239-71696258 Msa0786270:CDS 50.0%
AGAACTGAGGAGTAAGGGTG+AGG + chr5_2:71696263-71696282 Msa0786270:CDS 50.0%
GAGTAAGGGTGAGGAGATGA+GGG + chr5_2:71696272-71696291 Msa0786270:CDS 50.0%
GGCTGAGGTTATTGCTGCTA+GGG + chr5_2:71696350-71696369 Msa0786270:CDS 50.0%
TGAGGTTATTGCTGCTAGGG+CGG + chr5_2:71696353-71696372 Msa0786270:CDS 50.0%
ATCTTGAGACGCAGATTGCG+AGG + chr5_2:71696379-71696398 Msa0786270:CDS 50.0%
GAGATGAAGAAGGAGGCTGA+GGG + chr5_2:71696441-71696460 Msa0786270:CDS 50.0%
!!! GGAGGTTTTGAAGGAGAAGG+AGG + chr5_2:71696470-71696489 Msa0786270:CDS 50.0%
!! TAGGGTTGAGGTGTTGGTGA+AGG + chr5_2:71696494-71696513 Msa0786270:CDS 50.0%
!! TGAGGTGTTGGTGAAGGAAG+TGG + chr5_2:71696500-71696519 Msa0786270:CDS 50.0%
! GTGTTGGTGAAGGAAGTGGA+AGG + chr5_2:71696504-71696523 Msa0786270:CDS 50.0%
TTAGGGTTGAGGAGGAACTG+AGG + chr5_2:71696628-71696647 Msa0786270:CDS 50.0%
TAGGGTTGAGGAGGAACTGA+GGG + chr5_2:71696629-71696648 Msa0786270:CDS 50.0%
GAGGAACTGAGGGATACGAT+TGG + chr5_2:71696639-71696658 Msa0786270:CDS 50.0%
GAGGGATACGATTGGTGAGA+AGG + chr5_2:71696647-71696666 Msa0786270:CDS 50.0%
GCTGAGAAGAAAGATGAGGC+AGG + chr5_2:71696723-71696742 Msa0786270:CDS 50.0%
AGAAAGATGAGGCAGGGGAT+TGG + chr5_2:71696730-71696749 Msa0786270:CDS 50.0%
TGGGATGCATGGTGAAGAGA+AGG + chr5_2:71696917-71696936 Msa0786270:CDS 50.0%
ATGTGTACTGCGCCAAACGA+AGG + chr5_2:71697018-71697037 Msa0786270:CDS 50.0%
GATGTGGGAATACGAATGGG+AGG + chr5_2:71697053-71697072 Msa0786270:three_prime_UTR 50.0%
! ATACGAATGGGAGGGTGTAG+AGG + chr5_2:71697062-71697081 Msa0786270:three_prime_UTR 50.0%
!!! GTGTCGTTTTCGATCGGGTA+TGG - chr5_2:71695655-71695674 None:intergenic 50.0%
!!! TGGTGGTGTCGTTTTCGATC+GGG - chr5_2:71695660-71695679 None:intergenic 50.0%
! GCGGATGACGGTGTTTCAAA+CGG + chr5_2:71696111-71696130 Msa0786270:CDS 50.0%
CAAGAAGTTGACGCTGGAGA+TGG + chr5_2:71696239-71696258 Msa0786270:CDS 50.0%
AGAACTGAGGAGTAAGGGTG+AGG + chr5_2:71696263-71696282 Msa0786270:CDS 50.0%
GAGTAAGGGTGAGGAGATGA+GGG + chr5_2:71696272-71696291 Msa0786270:CDS 50.0%
GGCTGAGGTTATTGCTGCTA+GGG + chr5_2:71696350-71696369 Msa0786270:CDS 50.0%
TGAGGTTATTGCTGCTAGGG+CGG + chr5_2:71696353-71696372 Msa0786270:CDS 50.0%
ATCTTGAGACGCAGATTGCG+AGG + chr5_2:71696379-71696398 Msa0786270:CDS 50.0%
GAGATGAAGAAGGAGGCTGA+GGG + chr5_2:71696441-71696460 Msa0786270:CDS 50.0%
!!! GGAGGTTTTGAAGGAGAAGG+AGG + chr5_2:71696470-71696489 Msa0786270:CDS 50.0%
!! TAGGGTTGAGGTGTTGGTGA+AGG + chr5_2:71696494-71696513 Msa0786270:CDS 50.0%
!! TGAGGTGTTGGTGAAGGAAG+TGG + chr5_2:71696500-71696519 Msa0786270:CDS 50.0%
! GTGTTGGTGAAGGAAGTGGA+AGG + chr5_2:71696504-71696523 Msa0786270:CDS 50.0%
TTAGGGTTGAGGAGGAACTG+AGG + chr5_2:71696628-71696647 Msa0786270:CDS 50.0%
TAGGGTTGAGGAGGAACTGA+GGG + chr5_2:71696629-71696648 Msa0786270:CDS 50.0%
GAGGAACTGAGGGATACGAT+TGG + chr5_2:71696639-71696658 Msa0786270:CDS 50.0%
GAGGGATACGATTGGTGAGA+AGG + chr5_2:71696647-71696666 Msa0786270:CDS 50.0%
GCTGAGAAGAAAGATGAGGC+AGG + chr5_2:71696723-71696742 Msa0786270:CDS 50.0%
AGAAAGATGAGGCAGGGGAT+TGG + chr5_2:71696730-71696749 Msa0786270:CDS 50.0%
TGGGATGCATGGTGAAGAGA+AGG + chr5_2:71696917-71696936 Msa0786270:CDS 50.0%
ATGTGTACTGCGCCAAACGA+AGG + chr5_2:71697018-71697037 Msa0786270:CDS 50.0%
GATGTGGGAATACGAATGGG+AGG + chr5_2:71697053-71697072 Msa0786270:three_prime_UTR 50.0%
! ATACGAATGGGAGGGTGTAG+AGG + chr5_2:71697062-71697081 Msa0786270:three_prime_UTR 50.0%
! GAAGATCTCGGCGTTGGAGA+AGG + chr5_2:71696170-71696189 Msa0786270:CDS 55.0%
CGCTGGAGATGGAAGAACTG+AGG + chr5_2:71696250-71696269 Msa0786270:CDS 55.0%
GGAGTAAGGGTGAGGAGATG+AGG + chr5_2:71696271-71696290 Msa0786270:CDS 55.0%
GAAGTCGCAAGATTCGGCCA+AGG + chr5_2:71696326-71696345 Msa0786270:CDS 55.0%
AGCAATAACCTCAGCCGCCT+TGG - chr5_2:71696346-71696365 None:intergenic 55.0%
CGGCTGAGGTTATTGCTGCT+AGG + chr5_2:71696349-71696368 Msa0786270:CDS 55.0%
!! TACGGATATGAGTGCTGGGG+AGG + chr5_2:71696419-71696438 Msa0786270:CDS 55.0%
TGCTGGGGAGGAGATGAAGA+AGG + chr5_2:71696431-71696450 Msa0786270:CDS 55.0%
TGGGGAGGAGATGAAGAAGG+AGG + chr5_2:71696434-71696453 Msa0786270:CDS 55.0%
GGAGATGAAGAAGGAGGCTG+AGG + chr5_2:71696440-71696459 Msa0786270:CDS 55.0%
GAAGGAGGCTGAGGGTTTGA+AGG + chr5_2:71696449-71696468 Msa0786270:CDS 55.0%
TGAGGCGAGGGTGAAGGATT+TGG + chr5_2:71696551-71696570 Msa0786270:CDS 55.0%
TCGAGGAAGTTGGGGAGTCT+GGG + chr5_2:71696838-71696857 Msa0786270:CDS 55.0%
GCAGTGGCCAATTGTAGCAG+CGG + chr5_2:71696950-71696969 Msa0786270:CDS 55.0%
CAGTGGCCAATTGTAGCAGC+GGG + chr5_2:71696951-71696970 Msa0786270:CDS 55.0%
ACACACAACAAGGGGACGTG+GGG - chr5_2:71697399-71697418 None:intergenic 55.0%
GACACACAACAAGGGGACGT+GGG - chr5_2:71697400-71697419 None:intergenic 55.0%
AGACACACAACAAGGGGACG+TGG - chr5_2:71697401-71697420 None:intergenic 55.0%
! GAAGATCTCGGCGTTGGAGA+AGG + chr5_2:71696170-71696189 Msa0786270:CDS 55.0%
CGCTGGAGATGGAAGAACTG+AGG + chr5_2:71696250-71696269 Msa0786270:CDS 55.0%
GGAGTAAGGGTGAGGAGATG+AGG + chr5_2:71696271-71696290 Msa0786270:CDS 55.0%
GAAGTCGCAAGATTCGGCCA+AGG + chr5_2:71696326-71696345 Msa0786270:CDS 55.0%
AGCAATAACCTCAGCCGCCT+TGG - chr5_2:71696346-71696365 None:intergenic 55.0%
CGGCTGAGGTTATTGCTGCT+AGG + chr5_2:71696349-71696368 Msa0786270:CDS 55.0%
!! TACGGATATGAGTGCTGGGG+AGG + chr5_2:71696419-71696438 Msa0786270:CDS 55.0%
TGCTGGGGAGGAGATGAAGA+AGG + chr5_2:71696431-71696450 Msa0786270:CDS 55.0%
TGGGGAGGAGATGAAGAAGG+AGG + chr5_2:71696434-71696453 Msa0786270:CDS 55.0%
GGAGATGAAGAAGGAGGCTG+AGG + chr5_2:71696440-71696459 Msa0786270:CDS 55.0%
GAAGGAGGCTGAGGGTTTGA+AGG + chr5_2:71696449-71696468 Msa0786270:CDS 55.0%
TGAGGCGAGGGTGAAGGATT+TGG + chr5_2:71696551-71696570 Msa0786270:CDS 55.0%
TCGAGGAAGTTGGGGAGTCT+GGG + chr5_2:71696838-71696857 Msa0786270:CDS 55.0%
GCAGTGGCCAATTGTAGCAG+CGG + chr5_2:71696950-71696969 Msa0786270:CDS 55.0%
CAGTGGCCAATTGTAGCAGC+GGG + chr5_2:71696951-71696970 Msa0786270:CDS 55.0%
ACACACAACAAGGGGACGTG+GGG - chr5_2:71697399-71697418 None:intergenic 55.0%
GACACACAACAAGGGGACGT+GGG - chr5_2:71697400-71697419 None:intergenic 55.0%
AGACACACAACAAGGGGACG+TGG - chr5_2:71697401-71697420 None:intergenic 55.0%
GGTGACGAAGATCTCGGCGT+TGG + chr5_2:71696164-71696183 Msa0786270:CDS 60.0%
GTCGCAAGATTCGGCCAAGG+CGG + chr5_2:71696329-71696348 Msa0786270:CDS 60.0%
GGTTATTGCTGCTAGGGCGG+CGG + chr5_2:71696356-71696375 Msa0786270:CDS 60.0%
GGAGGCTGAGGGTTTGAAGG+AGG + chr5_2:71696452-71696471 Msa0786270:CDS 60.0%
GGAGAAGGAGGGTAGGGTTG+AGG + chr5_2:71696482-71696501 Msa0786270:CDS 60.0%
GGAGGGTAGGGTTGAGGTGT+TGG + chr5_2:71696488-71696507 Msa0786270:CDS 60.0%
GAAGGCGAAAGCGGAGAGTG+AGG + chr5_2:71696533-71696552 Msa0786270:CDS 60.0%
GAAAGCGGAGAGTGAGGCGA+GGG + chr5_2:71696539-71696558 Msa0786270:CDS 60.0%
CTCGAGGAAGTTGGGGAGTC+TGG + chr5_2:71696837-71696856 Msa0786270:CDS 60.0%
CCTGCTCCCGCTGCTACAAT+TGG - chr5_2:71696960-71696979 None:intergenic 60.0%
CCAATTGTAGCAGCGGGAGC+AGG + chr5_2:71696957-71696976 Msa0786270:CDS 60.0%
AGCAGCGGGAGCAGGAACTA+CGG + chr5_2:71696965-71696984 Msa0786270:CDS 60.0%
GGTGACGAAGATCTCGGCGT+TGG + chr5_2:71696164-71696183 Msa0786270:CDS 60.0%
GTCGCAAGATTCGGCCAAGG+CGG + chr5_2:71696329-71696348 Msa0786270:CDS 60.0%
GGTTATTGCTGCTAGGGCGG+CGG + chr5_2:71696356-71696375 Msa0786270:CDS 60.0%
GGAGGCTGAGGGTTTGAAGG+AGG + chr5_2:71696452-71696471 Msa0786270:CDS 60.0%
GGAGAAGGAGGGTAGGGTTG+AGG + chr5_2:71696482-71696501 Msa0786270:CDS 60.0%
GGAGGGTAGGGTTGAGGTGT+TGG + chr5_2:71696488-71696507 Msa0786270:CDS 60.0%
GAAGGCGAAAGCGGAGAGTG+AGG + chr5_2:71696533-71696552 Msa0786270:CDS 60.0%
GAAAGCGGAGAGTGAGGCGA+GGG + chr5_2:71696539-71696558 Msa0786270:CDS 60.0%
CTCGAGGAAGTTGGGGAGTC+TGG + chr5_2:71696837-71696856 Msa0786270:CDS 60.0%
CCTGCTCCCGCTGCTACAAT+TGG - chr5_2:71696960-71696979 None:intergenic 60.0%
CCAATTGTAGCAGCGGGAGC+AGG + chr5_2:71696957-71696976 Msa0786270:CDS 60.0%
AGCAGCGGGAGCAGGAACTA+CGG + chr5_2:71696965-71696984 Msa0786270:CDS 60.0%
AGATTCGGCCAAGGCGGCTG+AGG + chr5_2:71696335-71696354 Msa0786270:CDS 65.0%
CGAAAGCGGAGAGTGAGGCG+AGG + chr5_2:71696538-71696557 Msa0786270:CDS 65.0%
GGAGAGTGAGGCGAGGGTGA+AGG + chr5_2:71696545-71696564 Msa0786270:CDS 65.0%
AGATTCGGCCAAGGCGGCTG+AGG + chr5_2:71696335-71696354 Msa0786270:CDS 65.0%
CGAAAGCGGAGAGTGAGGCG+AGG + chr5_2:71696538-71696557 Msa0786270:CDS 65.0%
GGAGAGTGAGGCGAGGGTGA+AGG + chr5_2:71696545-71696564 Msa0786270:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 71695584 71697448 71695584 ID=Msa0786270;Name=Msa0786270
chr5_2 mRNA 71695584 71697448 71695584 ID=Msa0786270-mRNA-1;Parent=Msa0786270;Name=Msa0786270-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0.5|0.5|0|0|2|405|315
chr5_2 exon 71695584 71695587 71695584 ID=Msa0786270-mRNA-1:exon:21675;Parent=Msa0786270-mRNA-1
chr5_2 exon 71696100 71697448 71696100 ID=Msa0786270-mRNA-1:exon:21676;Parent=Msa0786270-mRNA-1
chr5_2 CDS 71695584 71695587 71695584 ID=Msa0786270-mRNA-1:cds;Parent=Msa0786270-mRNA-1
chr5_2 CDS 71696100 71697043 71696100 ID=Msa0786270-mRNA-1:cds;Parent=Msa0786270-mRNA-1
chr5_2 three_prime_UTR 71697044 71697448 71697044 ID=Msa0786270-mRNA-1:three_prime_utr;Parent=Msa0786270-mRNA-1
Gene Sequence

>Msa0786270

ATGAAATTAACAATGGCGGATGACGGTGTTTCAAACGGTGTTGTTGATGATCAGTATGAGGATCAATCGGTGACGAAGATCTCGGCGTTGGAGAAGGAGAGAGATGAATTGGTGCAAGAGAATAACGAGAAGAAGGAGGAAATCAAGAAGTTGACGCTGGAGATGGAAGAACTGAGGAGTAAGGGTGAGGAGATGAGGGAGAAGATTGAAGAGATGCGTGATGTGGTTGAGAAGTCGCAAGATTCGGCCAAGGCGGCTGAGGTTATTGCTGCTAGGGCGGCGGATCTTGAGACGCAGATTGCGAGGATGCAGCATGATATGATTACGGATATGAGTGCTGGGGAGGAGATGAAGAAGGAGGCTGAGGGTTTGAAGGAGGTTTTGAAGGAGAAGGAGGGTAGGGTTGAGGTGTTGGTGAAGGAAGTGGAAGGTTTGAAGAAGGCGAAAGCGGAGAGTGAGGCGAGGGTGAAGGATTTGGAGAAGAGAATTGGTGTTCTTGAGATGAAGGAGATTGAGGAGAGGAATAAGAGGATTAGGGTTGAGGAGGAACTGAGGGATACGATTGGTGAGAAGGATAGGGAAATTGATGGTTTTAGAAACAAGGTTGAGGAATTGGAGAAGGTTGGTGCTGAGAAGAAAGATGAGGCAGGGGATTGGTTGAATGAGAAACTGAGTTTGGAGAAGGCACTTAGAGAATCTGAGGAGAAAGCAAAGGGTTTTGAATCACAAATTGTTCAATTGCTCGAGGAAGTTGGGGAGTCTGGGAAGATGATCAAGTCACTGAATGAAAAAGCTGCTGAGATTGTCGGTAGAGAGATAAATGGGATGCATGGTGAAGAGAAGGATTTTAAGTTGCAGTGGCCAATTGTAGCAGCGGGAGCAGGAACTACGGTAGCAGTTTTTGGTGCAGCTGCGTTGATCTATGTGTACTGCGCCAAACGAAGGTGA

Protein sequence

>Msa0786270

MKLTMADDGVSNGVVDDQYEDQSVTKISALEKERDELVQENNEKKEEIKKLTLEMEELRSKGEEMREKIEEMRDVVEKSQDSAKAAEVIAARAADLETQIARMQHDMITDMSAGEEMKKEAEGLKEVLKEKEGRVEVLVKEVEGLKKAKAESEARVKDLEKRIGVLEMKEIEERNKRIRVEEELRDTIGEKDREIDGFRNKVEELEKVGAEKKDEAGDWLNEKLSLEKALRESEEKAKGFESQIVQLLEEVGESGKMIKSLNEKAAEIVGREINGMHGEEKDFKLQWPIVAAGAGTTVAVFGAAALIYVYCAKRR*