AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0128860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128860 MtrunA17_Chr1g0195471 98.319 119 2 0 1 119 1 119 4.59e-83 238
Msa0128860 MtrunA17_Chr7g0272321 94.444 108 6 0 12 119 17 124 9.06e-62 184
Msa0128860 MtrunA17_Chr1g0192241 94.915 59 3 0 61 119 18 76 1.26e-25 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128860 AT3G05560.1 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa0128860 AT3G05560.3 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa0128860 AT3G05560.2 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa0128860 AT5G27770.1 86.735 98 13 0 11 108 16 113 1.47e-49 154
Msa0128860 AT1G02830.1 75.229 109 27 0 2 110 9 117 9.77e-46 144

Find 51 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTGGGAACTCGAATT+TGG 0.136467 1_3:+58705178 None:intergenic
AATATAAACTCGGGAGGTTT+TGG 0.218178 1_3:-58706742 Msa0128860:five_prime_UTR
ATAAACATCTACCAACTAAA+AGG 0.310288 1_3:+58705216 None:intergenic
TTCCCTGGAGAAGTTTCTTC+AGG 0.314117 1_3:-58706574 Msa0128860:CDS
GCCAGTTGAGGATAAGATTA+TGG 0.328511 1_3:-58706604 Msa0128860:CDS
ATTAGGTGGTGTAATTGCTT+TGG 0.366552 1_3:-58705408 Msa0128860:three_prime_UTR
ATCTTGAGGCATTCTCCATT+AGG 0.367839 1_3:-58705425 Msa0128860:three_prime_UTR
ATAGATATTGCGGTCCTTGT+TGG 0.377160 1_3:+58705513 None:intergenic
CTTCCTGATGATGCAAAACT+AGG 0.386024 1_3:+58706708 None:intergenic
ATGGACGTAATTTCCTGCTC+TGG 0.403565 1_3:+58705164 None:intergenic
TCCATAATCTTATCCTCAAC+TGG 0.404476 1_3:+58706603 None:intergenic
CGGAGTGAAGGGTAAGAAGA+AGG 0.409364 1_3:-58706655 Msa0128860:CDS
ATCGGAGGTAACAGTGATCT+TGG 0.422181 1_3:+58706485 None:intergenic
GATTATGGACATCGCTTCCC+TGG 0.434039 1_3:-58706589 Msa0128860:CDS
CGCGAAAATGAGCGGAGTGA+AGG 0.462475 1_3:-58706667 Msa0128860:exon
TCTCCTGAAGAAACTTCTCC+AGG 0.463361 1_3:+58706571 None:intergenic
AAAGCAATTACACCACCTAA+TGG 0.464571 1_3:+58705410 None:intergenic
AGATTCAGTTATTTATATGC+TGG 0.465624 1_3:-58705262 Msa0128860:three_prime_UTR
AAAAGCACAATGTGAGGGAT+TGG 0.474548 1_3:-58705552 Msa0128860:CDS
CTTCAACATTGCTGAGAATG+AGG 0.480373 1_3:-58705479 Msa0128860:CDS
CCGATAGCAATTTCTCCAAA+AGG 0.482446 1_3:-58706467 Msa0128860:intron
ATTAAAGTTGGTGGTAAAGC+TGG 0.482585 1_3:-58706546 Msa0128860:CDS
CAAATTCGAGTTCCCAGAGC+AGG 0.487490 1_3:-58705177 Msa0128860:three_prime_UTR
CCGATAATAACTATAAAACT+TGG 0.504930 1_3:+58705302 None:intergenic
CAGTTATTTATATGCTGGCA+TGG 0.507178 1_3:-58705257 Msa0128860:three_prime_UTR
GCGAAAATGAGCGGAGTGAA+GGG 0.509201 1_3:-58706666 Msa0128860:exon
CTTCAGGAGAGGATTAAAGT+TGG 0.530224 1_3:-58706558 Msa0128860:CDS
TAATAACTATAAAACTTGGT+GGG 0.537506 1_3:+58705306 None:intergenic
CAGGAGAGGATTAAAGTTGG+TGG 0.545199 1_3:-58706555 Msa0128860:CDS
TTCCTGATGATGCAAAACTA+GGG 0.545341 1_3:+58706709 None:intergenic
TGGACGTAATTTCCTGCTCT+GGG 0.548542 1_3:+58705165 None:intergenic
GGTGGTAAAGCTGGTGCTCT+CGG 0.555561 1_3:-58706537 Msa0128860:CDS
CGATTGCGCGAAGCCAGTTG+AGG 0.561050 1_3:-58706616 Msa0128860:CDS
ATAATAACTATAAAACTTGG+TGG 0.561346 1_3:+58705305 None:intergenic
TGGAGAAGTTTCTTCAGGAG+AGG 0.565476 1_3:-58706569 Msa0128860:CDS
AATAACTATAAAACTTGGTG+GGG 0.566911 1_3:+58705307 None:intergenic
TTGAGGCATTCTCCATTAGG+TGG 0.571382 1_3:-58705422 Msa0128860:three_prime_UTR
GGAGTGAAGGGTAAGAAGAA+GGG 0.572006 1_3:-58706654 Msa0128860:CDS
AACCATGAATAATATAAACT+CGG 0.575606 1_3:-58706752 None:intergenic
AGATCTTGTTCTCTATCTTG+AGG 0.582079 1_3:-58705439 Msa0128860:three_prime_UTR
ATCTCAACTCATAGATATTG+CGG 0.582807 1_3:+58705503 None:intergenic
ACCATGAATAATATAAACTC+GGG 0.583708 1_3:-58706751 None:intergenic
AGTCTCAACGCGAAAATGAG+CGG 0.596462 1_3:-58706675 Msa0128860:exon
TTTGGAGAAATTGCTATCGG+AGG 0.603460 1_3:+58706470 None:intergenic
TCGTGTTATTGCATCCAACA+AGG 0.613064 1_3:-58705527 Msa0128860:CDS
TTCAACATTGCTGAGAATGA+GGG 0.613248 1_3:-58705478 Msa0128860:CDS
ATGAATAATATAAACTCGGG+AGG 0.618724 1_3:-58706748 Msa0128860:five_prime_UTR
CTCCTGAAGAAACTTCTCCA+GGG 0.621359 1_3:+58706572 None:intergenic
TTTGCATCATCAGGAAGAAG+GGG 0.624378 1_3:-58706702 Msa0128860:five_prime_UTR
TTGCATCATCAGGAAGAAGG+GGG 0.675457 1_3:-58706701 Msa0128860:five_prime_UTR
TTTGTCACGAGTAACAGTAA+CGG 0.687075 1_3:+58706509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATGTCTTAATTTTTTT+TGG - chr1_3:58706230-58706249 Msa0128860:intron 15.0%
!!! TTAAAATTTTGTGTTTACTT+TGG - chr1_3:58706574-58706593 Msa0128860:CDS 15.0%
!!! CTTTATGTCTTAATTTTTTT+TGG - chr1_3:58706230-58706249 Msa0128860:intron 15.0%
!!! TTAAAATTTTGTGTTTACTT+TGG - chr1_3:58706574-58706593 Msa0128860:CDS 15.0%
!!! TATTTGTTGATTAATGTGTT+AGG - chr1_3:58705488-58705507 Msa0128860:CDS 20.0%
!! ATTTGACATTATTATGATTC+TGG - chr1_3:58706111-58706130 Msa0128860:intron 20.0%
!! GACAAAAAACATAGATAAAT+GGG + chr1_3:58706537-58706556 None:intergenic 20.0%
!! TGACAAAAAACATAGATAAA+TGG + chr1_3:58706538-58706557 None:intergenic 20.0%
!! TAATAACTATAAAACTTGGT+GGG + chr1_3:58706613-58706632 None:intergenic 20.0%
!! ATAATAACTATAAAACTTGG+TGG + chr1_3:58706614-58706633 None:intergenic 20.0%
!!! CCAAGTTTTATAGTTATTAT+CGG - chr1_3:58706614-58706633 Msa0128860:CDS 20.0%
!!! TATTTGTTGATTAATGTGTT+AGG - chr1_3:58705488-58705507 Msa0128860:CDS 20.0%
!! ATTTGACATTATTATGATTC+TGG - chr1_3:58706111-58706130 Msa0128860:intron 20.0%
!! GACAAAAAACATAGATAAAT+GGG + chr1_3:58706537-58706556 None:intergenic 20.0%
!! TGACAAAAAACATAGATAAA+TGG + chr1_3:58706538-58706557 None:intergenic 20.0%
!! TAATAACTATAAAACTTGGT+GGG + chr1_3:58706613-58706632 None:intergenic 20.0%
!! ATAATAACTATAAAACTTGG+TGG + chr1_3:58706614-58706633 None:intergenic 20.0%
!!! CCAAGTTTTATAGTTATTAT+CGG - chr1_3:58706614-58706633 Msa0128860:CDS 20.0%
! ATATGCTTCATGTAATTGTA+TGG - chr1_3:58705637-58705656 Msa0128860:intron 25.0%
! TATGCTTCATGTAATTGTAT+GGG - chr1_3:58705638-58705657 Msa0128860:intron 25.0%
! TCGTATATTTAGTGTATGTT+TGG - chr1_3:58705684-58705703 Msa0128860:intron 25.0%
! ATATTTAGTGTATGTTTGGA+TGG - chr1_3:58705688-58705707 Msa0128860:intron 25.0%
! TATTTAGTGTATGTTTGGAT+GGG - chr1_3:58705689-58705708 Msa0128860:intron 25.0%
! AAAAATAGTTAAACTGAGCT+GGG + chr1_3:58706162-58706181 None:intergenic 25.0%
! TAAAAATAGTTAAACTGAGC+TGG + chr1_3:58706163-58706182 None:intergenic 25.0%
!! AATAACTATAAAACTTGGTG+GGG + chr1_3:58706612-58706631 None:intergenic 25.0%
! CCGATAATAACTATAAAACT+TGG + chr1_3:58706617-58706636 None:intergenic 25.0%
! AGATTCAGTTATTTATATGC+TGG - chr1_3:58706654-58706673 Msa0128860:CDS 25.0%
! ATAAACATCTACCAACTAAA+AGG + chr1_3:58706703-58706722 None:intergenic 25.0%
! ATATGCTTCATGTAATTGTA+TGG - chr1_3:58705637-58705656 Msa0128860:intron 25.0%
! TATGCTTCATGTAATTGTAT+GGG - chr1_3:58705638-58705657 Msa0128860:intron 25.0%
! TCGTATATTTAGTGTATGTT+TGG - chr1_3:58705684-58705703 Msa0128860:intron 25.0%
! ATATTTAGTGTATGTTTGGA+TGG - chr1_3:58705688-58705707 Msa0128860:intron 25.0%
! TATTTAGTGTATGTTTGGAT+GGG - chr1_3:58705689-58705708 Msa0128860:intron 25.0%
! AAAAATAGTTAAACTGAGCT+GGG + chr1_3:58706162-58706181 None:intergenic 25.0%
! TAAAAATAGTTAAACTGAGC+TGG + chr1_3:58706163-58706182 None:intergenic 25.0%
!! AATAACTATAAAACTTGGTG+GGG + chr1_3:58706612-58706631 None:intergenic 25.0%
! CCGATAATAACTATAAAACT+TGG + chr1_3:58706617-58706636 None:intergenic 25.0%
! AGATTCAGTTATTTATATGC+TGG - chr1_3:58706654-58706673 Msa0128860:CDS 25.0%
! ATAAACATCTACCAACTAAA+AGG + chr1_3:58706703-58706722 None:intergenic 25.0%
! AAGATGAAGAAGTTACCTTT+TGG + chr1_3:58705467-58705486 None:intergenic 30.0%
CATGTGAACATTTCATTTAC+AGG + chr1_3:58705544-58705563 None:intergenic 30.0%
CATGTGTTTGAGTAATTATG+TGG - chr1_3:58705560-58705579 Msa0128860:CDS 30.0%
! CTGTAAGTCACCATAATTTT+GGG + chr1_3:58705762-58705781 None:intergenic 30.0%
! ACTGTAAGTCACCATAATTT+TGG + chr1_3:58705763-58705782 None:intergenic 30.0%
!!! TTTTGTTATTTTCTACCGTG+AGG - chr1_3:58705883-58705902 Msa0128860:intron 30.0%
GTCAAATTCTATTCACATAC+AGG + chr1_3:58706098-58706117 None:intergenic 30.0%
ATACAAGTCTTCTTCTTCTT+TGG - chr1_3:58706253-58706272 Msa0128860:intron 30.0%
ATCTCAACTCATAGATATTG+CGG + chr1_3:58706416-58706435 None:intergenic 30.0%
!!! GTTTTTTGTCAACTTGTTAC+TGG - chr1_3:58706547-58706566 Msa0128860:CDS 30.0%
! AAGATGAAGAAGTTACCTTT+TGG + chr1_3:58705467-58705486 None:intergenic 30.0%
CATGTGAACATTTCATTTAC+AGG + chr1_3:58705544-58705563 None:intergenic 30.0%
CATGTGTTTGAGTAATTATG+TGG - chr1_3:58705560-58705579 Msa0128860:CDS 30.0%
! CTGTAAGTCACCATAATTTT+GGG + chr1_3:58705762-58705781 None:intergenic 30.0%
! ACTGTAAGTCACCATAATTT+TGG + chr1_3:58705763-58705782 None:intergenic 30.0%
!!! TTTTGTTATTTTCTACCGTG+AGG - chr1_3:58705883-58705902 Msa0128860:intron 30.0%
GTCAAATTCTATTCACATAC+AGG + chr1_3:58706098-58706117 None:intergenic 30.0%
ATACAAGTCTTCTTCTTCTT+TGG - chr1_3:58706253-58706272 Msa0128860:intron 30.0%
ATCTCAACTCATAGATATTG+CGG + chr1_3:58706416-58706435 None:intergenic 30.0%
!!! GTTTTTTGTCAACTTGTTAC+TGG - chr1_3:58706547-58706566 Msa0128860:CDS 30.0%
! AATATAAACTCGGGAGGTTT+TGG - chr1_3:58705174-58705193 Msa0128860:three_prime_UTR 35.0%
! TTCCTGATGATGCAAAACTA+GGG + chr1_3:58705210-58705229 None:intergenic 35.0%
! TTTTGCATCATCAGGAAGAA+GGG - chr1_3:58705213-58705232 Msa0128860:three_prime_UTR 35.0%
TCCATAATCTTATCCTCAAC+TGG + chr1_3:58705316-58705335 None:intergenic 35.0%
!! ATTAAAGTTGGTGGTAAAGC+TGG - chr1_3:58705370-58705389 Msa0128860:three_prime_UTR 35.0%
TTTGTCACGAGTAACAGTAA+CGG + chr1_3:58705410-58705429 None:intergenic 35.0%
!! CCTTTTGGAGAAATTGCTAT+CGG + chr1_3:58705452-58705471 None:intergenic 35.0%
!! ATGTGGCTTTGAAATGTTGA+TGG - chr1_3:58705577-58705596 Msa0128860:CDS 35.0%
ATTGAATATTGAGACAGTGC+TGG - chr1_3:58705608-58705627 Msa0128860:intron 35.0%
! CGTAGGTTTTCCCAAAATTA+TGG - chr1_3:58705749-58705768 Msa0128860:intron 35.0%
CATCAATTGCAGGTTTCAAT+TGG + chr1_3:58705804-58705823 None:intergenic 35.0%
!! ACACTATGCTTGTTGTGAAA+GGG - chr1_3:58705927-58705946 Msa0128860:intron 35.0%
TGTCATGAGAATCCTTAAGT+TGG + chr1_3:58706009-58706028 None:intergenic 35.0%
! GCGAGTATGATTTGTGTAAA+TGG - chr1_3:58706045-58706064 Msa0128860:intron 35.0%
! ATGATTTGTGTAAATGGTCC+TGG - chr1_3:58706051-58706070 Msa0128860:intron 35.0%
ACAGGAATACTAGACAATAG+TGG + chr1_3:58706080-58706099 None:intergenic 35.0%
GGACAAAAATAATCACACGA+AGG + chr1_3:58706290-58706309 None:intergenic 35.0%
!!! GTGCTTTTTCAAGTACTTCT+TGG + chr1_3:58706352-58706371 None:intergenic 35.0%
! ACTTGAAAAAGCACAATGTG+AGG - chr1_3:58706358-58706377 Msa0128860:intron 35.0%
! CTTGAAAAAGCACAATGTGA+GGG - chr1_3:58706359-58706378 Msa0128860:intron 35.0%
TTCAACATTGCTGAGAATGA+GGG - chr1_3:58706438-58706457 Msa0128860:intron 35.0%
AGATCTTGTTCTCTATCTTG+AGG - chr1_3:58706477-58706496 Msa0128860:CDS 35.0%
AAAGCAATTACACCACCTAA+TGG + chr1_3:58706509-58706528 None:intergenic 35.0%
ATTAGGTGGTGTAATTGCTT+TGG - chr1_3:58706508-58706527 Msa0128860:CDS 35.0%
CAGTTATTTATATGCTGGCA+TGG - chr1_3:58706659-58706678 Msa0128860:CDS 35.0%
! TATGTTCTGCACCTTTTAGT+TGG - chr1_3:58706689-58706708 Msa0128860:five_prime_UTR 35.0%
! AATATAAACTCGGGAGGTTT+TGG - chr1_3:58705174-58705193 Msa0128860:three_prime_UTR 35.0%
! TTCCTGATGATGCAAAACTA+GGG + chr1_3:58705210-58705229 None:intergenic 35.0%
! TTTTGCATCATCAGGAAGAA+GGG - chr1_3:58705213-58705232 Msa0128860:three_prime_UTR 35.0%
TCCATAATCTTATCCTCAAC+TGG + chr1_3:58705316-58705335 None:intergenic 35.0%
!! ATTAAAGTTGGTGGTAAAGC+TGG - chr1_3:58705370-58705389 Msa0128860:three_prime_UTR 35.0%
TTTGTCACGAGTAACAGTAA+CGG + chr1_3:58705410-58705429 None:intergenic 35.0%
!! CCTTTTGGAGAAATTGCTAT+CGG + chr1_3:58705452-58705471 None:intergenic 35.0%
!! ATGTGGCTTTGAAATGTTGA+TGG - chr1_3:58705577-58705596 Msa0128860:CDS 35.0%
ATTGAATATTGAGACAGTGC+TGG - chr1_3:58705608-58705627 Msa0128860:intron 35.0%
! CGTAGGTTTTCCCAAAATTA+TGG - chr1_3:58705749-58705768 Msa0128860:intron 35.0%
CATCAATTGCAGGTTTCAAT+TGG + chr1_3:58705804-58705823 None:intergenic 35.0%
!! ACACTATGCTTGTTGTGAAA+GGG - chr1_3:58705927-58705946 Msa0128860:intron 35.0%
TGTCATGAGAATCCTTAAGT+TGG + chr1_3:58706009-58706028 None:intergenic 35.0%
! GCGAGTATGATTTGTGTAAA+TGG - chr1_3:58706045-58706064 Msa0128860:intron 35.0%
! ATGATTTGTGTAAATGGTCC+TGG - chr1_3:58706051-58706070 Msa0128860:intron 35.0%
ACAGGAATACTAGACAATAG+TGG + chr1_3:58706080-58706099 None:intergenic 35.0%
GGACAAAAATAATCACACGA+AGG + chr1_3:58706290-58706309 None:intergenic 35.0%
!!! GTGCTTTTTCAAGTACTTCT+TGG + chr1_3:58706352-58706371 None:intergenic 35.0%
! ACTTGAAAAAGCACAATGTG+AGG - chr1_3:58706358-58706377 Msa0128860:intron 35.0%
! CTTGAAAAAGCACAATGTGA+GGG - chr1_3:58706359-58706378 Msa0128860:intron 35.0%
TTCAACATTGCTGAGAATGA+GGG - chr1_3:58706438-58706457 Msa0128860:intron 35.0%
AGATCTTGTTCTCTATCTTG+AGG - chr1_3:58706477-58706496 Msa0128860:CDS 35.0%
AAAGCAATTACACCACCTAA+TGG + chr1_3:58706509-58706528 None:intergenic 35.0%
ATTAGGTGGTGTAATTGCTT+TGG - chr1_3:58706508-58706527 Msa0128860:CDS 35.0%
CAGTTATTTATATGCTGGCA+TGG - chr1_3:58706659-58706678 Msa0128860:CDS 35.0%
! TATGTTCTGCACCTTTTAGT+TGG - chr1_3:58706689-58706708 Msa0128860:five_prime_UTR 35.0%
!!! AACCCTAGTTTTGCATCATC+AGG - chr1_3:58705205-58705224 Msa0128860:three_prime_UTR 40.0%
! CTTCCTGATGATGCAAAACT+AGG + chr1_3:58705211-58705230 None:intergenic 40.0%
! GTTTTGCATCATCAGGAAGA+AGG - chr1_3:58705212-58705231 Msa0128860:three_prime_UTR 40.0%
TTTGCATCATCAGGAAGAAG+GGG - chr1_3:58705214-58705233 Msa0128860:three_prime_UTR 40.0%
GCCAGTTGAGGATAAGATTA+TGG - chr1_3:58705312-58705331 Msa0128860:three_prime_UTR 40.0%
CTTCAGGAGAGGATTAAAGT+TGG - chr1_3:58705358-58705377 Msa0128860:three_prime_UTR 40.0%
TTTGGAGAAATTGCTATCGG+AGG + chr1_3:58705449-58705468 None:intergenic 40.0%
CCGATAGCAATTTCTCCAAA+AGG - chr1_3:58705449-58705468 Msa0128860:exon 40.0%
TTAGTGTATGTTTGGATGGG+TGG - chr1_3:58705692-58705711 Msa0128860:intron 40.0%
TGGGAAAACCTACGAATTCA+GGG + chr1_3:58705743-58705762 None:intergenic 40.0%
TTGGGAAAACCTACGAATTC+AGG + chr1_3:58705744-58705763 None:intergenic 40.0%
TGACTACACACATCAATTGC+AGG + chr1_3:58705814-58705833 None:intergenic 40.0%
AGGTCTAGTTGTTGCTGTAT+GGG - chr1_3:58705903-58705922 Msa0128860:intron 40.0%
!! CACACTATGCTTGTTGTGAA+AGG - chr1_3:58705926-58705945 Msa0128860:intron 40.0%
GAAAATGCCATTACCAGTCT+TGG - chr1_3:58705956-58705975 Msa0128860:intron 40.0%
!! TGAGAATCCTTAAGTTGGCA+CGG + chr1_3:58706004-58706023 None:intergenic 40.0%
!! TGGCAAAGGTAGTGTTGATT+AGG + chr1_3:58706311-58706330 None:intergenic 40.0%
TAATCAACACTACCTTTGCC+AGG - chr1_3:58706310-58706329 Msa0128860:intron 40.0%
GTACTTCAAATACCTGGCAA+AGG + chr1_3:58706325-58706344 None:intergenic 40.0%
GGTCAAGTACTTCAAATACC+TGG + chr1_3:58706331-58706350 None:intergenic 40.0%
! AAAAGCACAATGTGAGGGAT+TGG - chr1_3:58706364-58706383 Msa0128860:intron 40.0%
! TCGTGTTATTGCATCCAACA+AGG - chr1_3:58706389-58706408 Msa0128860:intron 40.0%
ATAGATATTGCGGTCCTTGT+TGG + chr1_3:58706406-58706425 None:intergenic 40.0%
CTTCAACATTGCTGAGAATG+AGG - chr1_3:58706437-58706456 Msa0128860:intron 40.0%
! ATCTTGAGGCATTCTCCATT+AGG - chr1_3:58706491-58706510 Msa0128860:CDS 40.0%
!!! AACCCTAGTTTTGCATCATC+AGG - chr1_3:58705205-58705224 Msa0128860:three_prime_UTR 40.0%
! CTTCCTGATGATGCAAAACT+AGG + chr1_3:58705211-58705230 None:intergenic 40.0%
! GTTTTGCATCATCAGGAAGA+AGG - chr1_3:58705212-58705231 Msa0128860:three_prime_UTR 40.0%
TTTGCATCATCAGGAAGAAG+GGG - chr1_3:58705214-58705233 Msa0128860:three_prime_UTR 40.0%
GCCAGTTGAGGATAAGATTA+TGG - chr1_3:58705312-58705331 Msa0128860:three_prime_UTR 40.0%
CTTCAGGAGAGGATTAAAGT+TGG - chr1_3:58705358-58705377 Msa0128860:three_prime_UTR 40.0%
TTTGGAGAAATTGCTATCGG+AGG + chr1_3:58705449-58705468 None:intergenic 40.0%
CCGATAGCAATTTCTCCAAA+AGG - chr1_3:58705449-58705468 Msa0128860:exon 40.0%
TTAGTGTATGTTTGGATGGG+TGG - chr1_3:58705692-58705711 Msa0128860:intron 40.0%
TGGGAAAACCTACGAATTCA+GGG + chr1_3:58705743-58705762 None:intergenic 40.0%
TTGGGAAAACCTACGAATTC+AGG + chr1_3:58705744-58705763 None:intergenic 40.0%
TGACTACACACATCAATTGC+AGG + chr1_3:58705814-58705833 None:intergenic 40.0%
AGGTCTAGTTGTTGCTGTAT+GGG - chr1_3:58705903-58705922 Msa0128860:intron 40.0%
!! CACACTATGCTTGTTGTGAA+AGG - chr1_3:58705926-58705945 Msa0128860:intron 40.0%
GAAAATGCCATTACCAGTCT+TGG - chr1_3:58705956-58705975 Msa0128860:intron 40.0%
!! TGAGAATCCTTAAGTTGGCA+CGG + chr1_3:58706004-58706023 None:intergenic 40.0%
!! TGGCAAAGGTAGTGTTGATT+AGG + chr1_3:58706311-58706330 None:intergenic 40.0%
TAATCAACACTACCTTTGCC+AGG - chr1_3:58706310-58706329 Msa0128860:intron 40.0%
GTACTTCAAATACCTGGCAA+AGG + chr1_3:58706325-58706344 None:intergenic 40.0%
GGTCAAGTACTTCAAATACC+TGG + chr1_3:58706331-58706350 None:intergenic 40.0%
! AAAAGCACAATGTGAGGGAT+TGG - chr1_3:58706364-58706383 Msa0128860:intron 40.0%
! TCGTGTTATTGCATCCAACA+AGG - chr1_3:58706389-58706408 Msa0128860:intron 40.0%
ATAGATATTGCGGTCCTTGT+TGG + chr1_3:58706406-58706425 None:intergenic 40.0%
CTTCAACATTGCTGAGAATG+AGG - chr1_3:58706437-58706456 Msa0128860:intron 40.0%
! ATCTTGAGGCATTCTCCATT+AGG - chr1_3:58706491-58706510 Msa0128860:CDS 40.0%
!!! ACTCGGGAGGTTTTGGATTA+CGG - chr1_3:58705181-58705200 Msa0128860:three_prime_UTR 45.0%
TTGCATCATCAGGAAGAAGG+GGG - chr1_3:58705215-58705234 Msa0128860:three_prime_UTR 45.0%
AGTCTCAACGCGAAAATGAG+CGG - chr1_3:58705241-58705260 Msa0128860:three_prime_UTR 45.0%
GGAGTGAAGGGTAAGAAGAA+GGG - chr1_3:58705262-58705281 Msa0128860:three_prime_UTR 45.0%
TTCCCTGGAGAAGTTTCTTC+AGG - chr1_3:58705342-58705361 Msa0128860:three_prime_UTR 45.0%
CTCCTGAAGAAACTTCTCCA+GGG + chr1_3:58705347-58705366 None:intergenic 45.0%
TCTCCTGAAGAAACTTCTCC+AGG + chr1_3:58705348-58705367 None:intergenic 45.0%
TGGAGAAGTTTCTTCAGGAG+AGG - chr1_3:58705347-58705366 Msa0128860:three_prime_UTR 45.0%
CAGGAGAGGATTAAAGTTGG+TGG - chr1_3:58705361-58705380 Msa0128860:three_prime_UTR 45.0%
ATCGGAGGTAACAGTGATCT+TGG + chr1_3:58705434-58705453 None:intergenic 45.0%
ACAGCAACAACTAGACCTCA+CGG + chr1_3:58705901-58705920 None:intergenic 45.0%
GAGGTCTAGTTGTTGCTGTA+TGG - chr1_3:58705902-58705921 Msa0128860:intron 45.0%
TCACAAGCCAAGACTGGTAA+TGG + chr1_3:58705966-58705985 None:intergenic 45.0%
CAAACATCACAAGCCAAGAC+TGG + chr1_3:58705972-58705991 None:intergenic 45.0%
!! GAGAATCCTTAAGTTGGCAC+GGG + chr1_3:58706003-58706022 None:intergenic 45.0%
!! ACTAGACAATAGTGGACACC+AGG + chr1_3:58706072-58706091 None:intergenic 45.0%
TTCTGGTGCAGTTACTGAAC+TGG - chr1_3:58706128-58706147 Msa0128860:intron 45.0%
! TTGAGGCATTCTCCATTAGG+TGG - chr1_3:58706494-58706513 Msa0128860:CDS 45.0%
!!! ACTCGGGAGGTTTTGGATTA+CGG - chr1_3:58705181-58705200 Msa0128860:three_prime_UTR 45.0%
TTGCATCATCAGGAAGAAGG+GGG - chr1_3:58705215-58705234 Msa0128860:three_prime_UTR 45.0%
AGTCTCAACGCGAAAATGAG+CGG - chr1_3:58705241-58705260 Msa0128860:three_prime_UTR 45.0%
GGAGTGAAGGGTAAGAAGAA+GGG - chr1_3:58705262-58705281 Msa0128860:three_prime_UTR 45.0%
TTCCCTGGAGAAGTTTCTTC+AGG - chr1_3:58705342-58705361 Msa0128860:three_prime_UTR 45.0%
CTCCTGAAGAAACTTCTCCA+GGG + chr1_3:58705347-58705366 None:intergenic 45.0%
TCTCCTGAAGAAACTTCTCC+AGG + chr1_3:58705348-58705367 None:intergenic 45.0%
TGGAGAAGTTTCTTCAGGAG+AGG - chr1_3:58705347-58705366 Msa0128860:three_prime_UTR 45.0%
CAGGAGAGGATTAAAGTTGG+TGG - chr1_3:58705361-58705380 Msa0128860:three_prime_UTR 45.0%
ATCGGAGGTAACAGTGATCT+TGG + chr1_3:58705434-58705453 None:intergenic 45.0%
ACAGCAACAACTAGACCTCA+CGG + chr1_3:58705901-58705920 None:intergenic 45.0%
GAGGTCTAGTTGTTGCTGTA+TGG - chr1_3:58705902-58705921 Msa0128860:intron 45.0%
TCACAAGCCAAGACTGGTAA+TGG + chr1_3:58705966-58705985 None:intergenic 45.0%
CAAACATCACAAGCCAAGAC+TGG + chr1_3:58705972-58705991 None:intergenic 45.0%
!! GAGAATCCTTAAGTTGGCAC+GGG + chr1_3:58706003-58706022 None:intergenic 45.0%
!! ACTAGACAATAGTGGACACC+AGG + chr1_3:58706072-58706091 None:intergenic 45.0%
TTCTGGTGCAGTTACTGAAC+TGG - chr1_3:58706128-58706147 Msa0128860:intron 45.0%
! TTGAGGCATTCTCCATTAGG+TGG - chr1_3:58706494-58706513 Msa0128860:CDS 45.0%
GCGAAAATGAGCGGAGTGAA+GGG - chr1_3:58705250-58705269 Msa0128860:three_prime_UTR 50.0%
CGGAGTGAAGGGTAAGAAGA+AGG - chr1_3:58705261-58705280 Msa0128860:three_prime_UTR 50.0%
GATTATGGACATCGCTTCCC+TGG - chr1_3:58705327-58705346 Msa0128860:three_prime_UTR 50.0%
CGTTAGCACCCTGAATTCGT+AGG - chr1_3:58705732-58705751 Msa0128860:intron 50.0%
TGCATTCCCGTGCCAACTTA+AGG - chr1_3:58705994-58706013 Msa0128860:intron 50.0%
!! CTGCTCTGGGAACTCGAATT+TGG + chr1_3:58706741-58706760 None:intergenic 50.0%
! CAAATTCGAGTTCCCAGAGC+AGG - chr1_3:58706739-58706758 Msa0128860:five_prime_UTR 50.0%
GCGAAAATGAGCGGAGTGAA+GGG - chr1_3:58705250-58705269 Msa0128860:three_prime_UTR 50.0%
CGGAGTGAAGGGTAAGAAGA+AGG - chr1_3:58705261-58705280 Msa0128860:three_prime_UTR 50.0%
GATTATGGACATCGCTTCCC+TGG - chr1_3:58705327-58705346 Msa0128860:three_prime_UTR 50.0%
CGTTAGCACCCTGAATTCGT+AGG - chr1_3:58705732-58705751 Msa0128860:intron 50.0%
TGCATTCCCGTGCCAACTTA+AGG - chr1_3:58705994-58706013 Msa0128860:intron 50.0%
!! CTGCTCTGGGAACTCGAATT+TGG + chr1_3:58706741-58706760 None:intergenic 50.0%
! CAAATTCGAGTTCCCAGAGC+AGG - chr1_3:58706739-58706758 Msa0128860:five_prime_UTR 50.0%
CGCGAAAATGAGCGGAGTGA+AGG - chr1_3:58705249-58705268 Msa0128860:three_prime_UTR 55.0%
GGTGGTAAAGCTGGTGCTCT+CGG - chr1_3:58705379-58705398 Msa0128860:three_prime_UTR 55.0%
CGCGAAAATGAGCGGAGTGA+AGG - chr1_3:58705249-58705268 Msa0128860:three_prime_UTR 55.0%
GGTGGTAAAGCTGGTGCTCT+CGG - chr1_3:58705379-58705398 Msa0128860:three_prime_UTR 55.0%
CGATTGCGCGAAGCCAGTTG+AGG - chr1_3:58705300-58705319 Msa0128860:three_prime_UTR 60.0%
CGATTGCGCGAAGCCAGTTG+AGG - chr1_3:58705300-58705319 Msa0128860:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 58705170 58706768 58705170 ID=Msa0128860;Name=Msa0128860
chr1_3 mRNA 58705170 58706768 58705170 ID=Msa0128860-mRNA-1;Parent=Msa0128860;Name=Msa0128860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|2|292|119
chr1_3 exon 58705170 58705606 58705170 ID=Msa0128860-mRNA-1:exon:18928;Parent=Msa0128860-mRNA-1
chr1_3 exon 58706468 58706768 58706468 ID=Msa0128860-mRNA-1:exon:18927;Parent=Msa0128860-mRNA-1
chr1_3 five_prime_UTR 58706683 58706768 58706683 ID=Msa0128860-mRNA-1:five_prime_utr;Parent=Msa0128860-mRNA-1
chr1_3 CDS 58706468 58706682 58706468 ID=Msa0128860-mRNA-1:cds;Parent=Msa0128860-mRNA-1
chr1_3 CDS 58705462 58705606 58705462 ID=Msa0128860-mRNA-1:cds;Parent=Msa0128860-mRNA-1
chr1_3 three_prime_UTR 58705170 58705461 58705170 ID=Msa0128860-mRNA-1:three_prime_utr;Parent=Msa0128860-mRNA-1
Gene Sequence

>Msa0128860

ATGAGCGGAGTGAAGGGTAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCGCGAAGCCAGTTGAGGATAAGATTATGGACATCGCTTCCCTGGAGAAGTTTCTTCAGGAGAGGATTAAAGTTGGTGGTAAAGCTGGTGCTCTCGGTGATTCCGTTACTGTTACTCGTGACAAATCCAAGATCACTGTTACCTCCGATAGCAATTTCTCCAAAAGGTATTTGAAGTACTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGTGTTATTGCATCCAACAAGGACCGCAATATCTATGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAAGATGAAGACTAA

Protein sequence

>Msa0128860

MSGVKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEGEDED*