AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174730 MtrunA17_Chr1g0195471 98.319 119 2 0 1 119 1 119 4.59e-83 238
Msa0174730 MtrunA17_Chr7g0272321 94.444 108 6 0 12 119 17 124 9.06e-62 184
Msa0174730 MtrunA17_Chr1g0192241 94.915 59 3 0 61 119 18 76 1.26e-25 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174730 AT3G05560.1 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa0174730 AT3G05560.3 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa0174730 AT3G05560.2 87.931 116 14 0 4 119 9 124 6.06e-63 187
Msa0174730 AT5G27770.1 86.735 98 13 0 11 108 16 113 1.47e-49 154
Msa0174730 AT1G02830.1 75.229 109 27 0 2 110 9 117 9.77e-46 144

Find 52 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTGGGAACTCGAATT+TGG 0.136467 1_4:+60502493 None:intergenic
AATATAAACTCGGGAGGTTT+TGG 0.218178 1_4:-60504029 Msa0174730:five_prime_UTR
ATAAACATCTACCAACTAAA+AGG 0.310288 1_4:+60502531 None:intergenic
TTCCCTGGAGAAGTTTCTTC+AGG 0.314117 1_4:-60503861 Msa0174730:CDS
GCCAGTTGAGGATAAGATTA+TGG 0.328511 1_4:-60503891 Msa0174730:CDS
ATTAGGTGGTGTAATTGCTT+TGG 0.366552 1_4:-60502723 Msa0174730:three_prime_UTR
ATCTTGAGGCATTCTCCATT+AGG 0.367839 1_4:-60502740 Msa0174730:three_prime_UTR
ATAGATATTGCGGTCCTTGT+TGG 0.377160 1_4:+60502828 None:intergenic
CTTCCTGATGATGCAAAACT+AGG 0.386024 1_4:+60503995 None:intergenic
TCCATAATCTTATCCTCAAC+TGG 0.404476 1_4:+60503890 None:intergenic
ATGGGCGTAATTTCCTGCTC+TGG 0.406577 1_4:+60502479 None:intergenic
CGGAGTGAAGGGTAAGAAGA+AGG 0.409364 1_4:-60503942 Msa0174730:CDS
ATCGGAGGTAACAGTGATCT+TGG 0.422181 1_4:+60503772 None:intergenic
GATTATGGACATCGCTTCCC+TGG 0.434039 1_4:-60503876 Msa0174730:CDS
CGCGAAAATGAGCGGAGTGA+AGG 0.462475 1_4:-60503954 Msa0174730:exon
TCTCCTGAAGAAACTTCTCC+AGG 0.463361 1_4:+60503858 None:intergenic
AAAGCAATTACACCACCTAA+TGG 0.464571 1_4:+60502725 None:intergenic
AGATTCAGTTATTTATATGC+TGG 0.465624 1_4:-60502577 Msa0174730:three_prime_UTR
AAAAGCACAATGTGAGGGAT+TGG 0.474548 1_4:-60502867 Msa0174730:CDS
CTTCAACATTGCTGAGAATG+AGG 0.480373 1_4:-60502794 Msa0174730:CDS
CCGATAGCAATTTCTCCAAA+AGG 0.482446 1_4:-60503754 Msa0174730:intron
ATTAAAGTTGGTGGTAAAGC+TGG 0.482585 1_4:-60503833 Msa0174730:CDS
CAAATTCGAGTTCCCAGAGC+AGG 0.487490 1_4:-60502492 Msa0174730:three_prime_UTR
TAGTTGGTAGATGTTTATCA+AGG 0.499946 1_4:-60502526 Msa0174730:three_prime_UTR
CCGATAATAACTATAAAACT+TGG 0.504930 1_4:+60502617 None:intergenic
CAGTTATTTATATGCTGGCA+TGG 0.507178 1_4:-60502572 Msa0174730:three_prime_UTR
GCGAAAATGAGCGGAGTGAA+GGG 0.509201 1_4:-60503953 Msa0174730:exon
CTTCAGGAGAGGATTAAAGT+TGG 0.530224 1_4:-60503845 Msa0174730:CDS
TAATAACTATAAAACTTGGT+GGG 0.537506 1_4:+60502621 None:intergenic
CAGGAGAGGATTAAAGTTGG+TGG 0.545199 1_4:-60503842 Msa0174730:CDS
TTCCTGATGATGCAAAACTA+GGG 0.545341 1_4:+60503996 None:intergenic
TGGGCGTAATTTCCTGCTCT+GGG 0.552796 1_4:+60502480 None:intergenic
GGTGGTAAAGCTGGTGCTCT+CGG 0.555561 1_4:-60503824 Msa0174730:CDS
CGATTGCGCGAAGCCAGTTG+AGG 0.561050 1_4:-60503903 Msa0174730:CDS
ATAATAACTATAAAACTTGG+TGG 0.561346 1_4:+60502620 None:intergenic
TGGAGAAGTTTCTTCAGGAG+AGG 0.565476 1_4:-60503856 Msa0174730:CDS
AATAACTATAAAACTTGGTG+GGG 0.566911 1_4:+60502622 None:intergenic
TTGAGGCATTCTCCATTAGG+TGG 0.571382 1_4:-60502737 Msa0174730:three_prime_UTR
GGAGTGAAGGGTAAGAAGAA+GGG 0.572006 1_4:-60503941 Msa0174730:CDS
AACCATGAATAATATAAACT+CGG 0.575606 1_4:-60504039 None:intergenic
AGATCTTGTTCTCTATCTTG+AGG 0.582079 1_4:-60502754 Msa0174730:three_prime_UTR
ATCTCAACTCATAGATATTG+CGG 0.582807 1_4:+60502818 None:intergenic
ACCATGAATAATATAAACTC+GGG 0.583708 1_4:-60504038 None:intergenic
AGTCTCAACGCGAAAATGAG+CGG 0.596462 1_4:-60503962 Msa0174730:exon
TTTGGAGAAATTGCTATCGG+AGG 0.603460 1_4:+60503757 None:intergenic
TCGTGTTATTGCATCCAACA+AGG 0.613064 1_4:-60502842 Msa0174730:CDS
TTCAACATTGCTGAGAATGA+GGG 0.613248 1_4:-60502793 Msa0174730:CDS
ATGAATAATATAAACTCGGG+AGG 0.618724 1_4:-60504035 Msa0174730:five_prime_UTR
CTCCTGAAGAAACTTCTCCA+GGG 0.621359 1_4:+60503859 None:intergenic
TTTGCATCATCAGGAAGAAG+GGG 0.624378 1_4:-60503989 Msa0174730:five_prime_UTR
TTGCATCATCAGGAAGAAGG+GGG 0.675457 1_4:-60503988 Msa0174730:five_prime_UTR
TTTGTCACGAGTAACAGTAA+CGG 0.687075 1_4:+60503796 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATGTCTTAATTTTTTT+TGG - chr1_4:60503517-60503536 Msa0174730:intron 15.0%
!!! TTAAAATTTTGTGTTTACTT+TGG - chr1_4:60503861-60503880 Msa0174730:CDS 15.0%
!!! CTTTATGTCTTAATTTTTTT+TGG - chr1_4:60503517-60503536 Msa0174730:intron 15.0%
!!! TTAAAATTTTGTGTTTACTT+TGG - chr1_4:60503861-60503880 Msa0174730:CDS 15.0%
!!! TATTTGTTGATTAATGTGTT+AGG - chr1_4:60502803-60502822 Msa0174730:CDS 20.0%
!! ATTTGACATTATTATGATTC+TGG - chr1_4:60503397-60503416 Msa0174730:intron 20.0%
!! GACAAAAAACATAGATAAAT+GGG + chr1_4:60503824-60503843 None:intergenic 20.0%
!! TGACAAAAAACATAGATAAA+TGG + chr1_4:60503825-60503844 None:intergenic 20.0%
!! TAATAACTATAAAACTTGGT+GGG + chr1_4:60503900-60503919 None:intergenic 20.0%
!! ATAATAACTATAAAACTTGG+TGG + chr1_4:60503901-60503920 None:intergenic 20.0%
!!! CCAAGTTTTATAGTTATTAT+CGG - chr1_4:60503901-60503920 Msa0174730:CDS 20.0%
!!! TATTTGTTGATTAATGTGTT+AGG - chr1_4:60502803-60502822 Msa0174730:CDS 20.0%
!! ATTTGACATTATTATGATTC+TGG - chr1_4:60503397-60503416 Msa0174730:intron 20.0%
!! GACAAAAAACATAGATAAAT+GGG + chr1_4:60503824-60503843 None:intergenic 20.0%
!! TGACAAAAAACATAGATAAA+TGG + chr1_4:60503825-60503844 None:intergenic 20.0%
!! TAATAACTATAAAACTTGGT+GGG + chr1_4:60503900-60503919 None:intergenic 20.0%
!! ATAATAACTATAAAACTTGG+TGG + chr1_4:60503901-60503920 None:intergenic 20.0%
!!! CCAAGTTTTATAGTTATTAT+CGG - chr1_4:60503901-60503920 Msa0174730:CDS 20.0%
! ATATGCTTCATGTAATTGTA+TGG - chr1_4:60502952-60502971 Msa0174730:intron 25.0%
! TATGCTTCATGTAATTGTAT+GGG - chr1_4:60502953-60502972 Msa0174730:intron 25.0%
! TCGTATATTTAGTGTATGTT+TGG - chr1_4:60502999-60503018 Msa0174730:intron 25.0%
! ATATTTAGTGTATGTTTGGA+TGG - chr1_4:60503003-60503022 Msa0174730:intron 25.0%
! TATTTAGTGTATGTTTGGAT+GGG - chr1_4:60503004-60503023 Msa0174730:intron 25.0%
! AAAAATAGTTAAACTGAGCT+GGG + chr1_4:60503448-60503467 None:intergenic 25.0%
! TAAAAATAGTTAAACTGAGC+TGG + chr1_4:60503449-60503468 None:intergenic 25.0%
!! AATAACTATAAAACTTGGTG+GGG + chr1_4:60503899-60503918 None:intergenic 25.0%
! CCGATAATAACTATAAAACT+TGG + chr1_4:60503904-60503923 None:intergenic 25.0%
! AGATTCAGTTATTTATATGC+TGG - chr1_4:60503941-60503960 Msa0174730:CDS 25.0%
! ATAAACATCTACCAACTAAA+AGG + chr1_4:60503990-60504009 None:intergenic 25.0%
! ATATGCTTCATGTAATTGTA+TGG - chr1_4:60502952-60502971 Msa0174730:intron 25.0%
! TATGCTTCATGTAATTGTAT+GGG - chr1_4:60502953-60502972 Msa0174730:intron 25.0%
! TCGTATATTTAGTGTATGTT+TGG - chr1_4:60502999-60503018 Msa0174730:intron 25.0%
! ATATTTAGTGTATGTTTGGA+TGG - chr1_4:60503003-60503022 Msa0174730:intron 25.0%
! TATTTAGTGTATGTTTGGAT+GGG - chr1_4:60503004-60503023 Msa0174730:intron 25.0%
! AAAAATAGTTAAACTGAGCT+GGG + chr1_4:60503448-60503467 None:intergenic 25.0%
! TAAAAATAGTTAAACTGAGC+TGG + chr1_4:60503449-60503468 None:intergenic 25.0%
!! AATAACTATAAAACTTGGTG+GGG + chr1_4:60503899-60503918 None:intergenic 25.0%
! CCGATAATAACTATAAAACT+TGG + chr1_4:60503904-60503923 None:intergenic 25.0%
! AGATTCAGTTATTTATATGC+TGG - chr1_4:60503941-60503960 Msa0174730:CDS 25.0%
! ATAAACATCTACCAACTAAA+AGG + chr1_4:60503990-60504009 None:intergenic 25.0%
! AAGATGAAGAAGTTACCTTT+TGG + chr1_4:60502782-60502801 None:intergenic 30.0%
CATGTGAACATTTCATTTAC+AGG + chr1_4:60502859-60502878 None:intergenic 30.0%
CATGTGTTTGAGTAATTATG+TGG - chr1_4:60502875-60502894 Msa0174730:CDS 30.0%
! CTGTAAGTCACCATAATTTT+GGG + chr1_4:60503077-60503096 None:intergenic 30.0%
! ACTGTAAGTCACCATAATTT+TGG + chr1_4:60503078-60503097 None:intergenic 30.0%
!!! TTTTGTTATTTTCTACCGTG+AGG - chr1_4:60503186-60503205 Msa0174730:intron 30.0%
GTCAAATTCTATTCACATAC+AGG + chr1_4:60503384-60503403 None:intergenic 30.0%
ATACAAGTCTTCTTCTTCTT+TGG - chr1_4:60503540-60503559 Msa0174730:intron 30.0%
ATCTCAACTCATAGATATTG+CGG + chr1_4:60503703-60503722 None:intergenic 30.0%
!!! GTTTTTTGTCAACTTGTTAC+TGG - chr1_4:60503834-60503853 Msa0174730:CDS 30.0%
!! TAGTTGGTAGATGTTTATCA+AGG - chr1_4:60503992-60504011 Msa0174730:five_prime_UTR 30.0%
! AAGATGAAGAAGTTACCTTT+TGG + chr1_4:60502782-60502801 None:intergenic 30.0%
CATGTGAACATTTCATTTAC+AGG + chr1_4:60502859-60502878 None:intergenic 30.0%
CATGTGTTTGAGTAATTATG+TGG - chr1_4:60502875-60502894 Msa0174730:CDS 30.0%
! CTGTAAGTCACCATAATTTT+GGG + chr1_4:60503077-60503096 None:intergenic 30.0%
! ACTGTAAGTCACCATAATTT+TGG + chr1_4:60503078-60503097 None:intergenic 30.0%
!!! TTTTGTTATTTTCTACCGTG+AGG - chr1_4:60503186-60503205 Msa0174730:intron 30.0%
GTCAAATTCTATTCACATAC+AGG + chr1_4:60503384-60503403 None:intergenic 30.0%
ATACAAGTCTTCTTCTTCTT+TGG - chr1_4:60503540-60503559 Msa0174730:intron 30.0%
ATCTCAACTCATAGATATTG+CGG + chr1_4:60503703-60503722 None:intergenic 30.0%
!!! GTTTTTTGTCAACTTGTTAC+TGG - chr1_4:60503834-60503853 Msa0174730:CDS 30.0%
!! TAGTTGGTAGATGTTTATCA+AGG - chr1_4:60503992-60504011 Msa0174730:five_prime_UTR 30.0%
! AATATAAACTCGGGAGGTTT+TGG - chr1_4:60502489-60502508 Msa0174730:three_prime_UTR 35.0%
! TTCCTGATGATGCAAAACTA+GGG + chr1_4:60502525-60502544 None:intergenic 35.0%
! TTTTGCATCATCAGGAAGAA+GGG - chr1_4:60502528-60502547 Msa0174730:three_prime_UTR 35.0%
TCCATAATCTTATCCTCAAC+TGG + chr1_4:60502631-60502650 None:intergenic 35.0%
!! ATTAAAGTTGGTGGTAAAGC+TGG - chr1_4:60502685-60502704 Msa0174730:three_prime_UTR 35.0%
TTTGTCACGAGTAACAGTAA+CGG + chr1_4:60502725-60502744 None:intergenic 35.0%
!! CCTTTTGGAGAAATTGCTAT+CGG + chr1_4:60502767-60502786 None:intergenic 35.0%
!! ATGTGGCTTTGAAATGTTGA+TGG - chr1_4:60502892-60502911 Msa0174730:CDS 35.0%
ATTGAATATTGAGACAGTGC+TGG - chr1_4:60502923-60502942 Msa0174730:intron 35.0%
! CGTAGGTTTTCCCAAAATTA+TGG - chr1_4:60503064-60503083 Msa0174730:intron 35.0%
TGTCATGAGAATCCTTAAGT+TGG + chr1_4:60503295-60503314 None:intergenic 35.0%
! GCGAGTATGATTTGTGTAAA+TGG - chr1_4:60503331-60503350 Msa0174730:intron 35.0%
! ATGATTTGTGTAAATGGTCC+TGG - chr1_4:60503337-60503356 Msa0174730:intron 35.0%
ACAGGAATACTAGACAATAG+TGG + chr1_4:60503366-60503385 None:intergenic 35.0%
GGACAAAAATAATCACACGA+AGG + chr1_4:60503577-60503596 None:intergenic 35.0%
!!! GTGCTTTTTCAAGTACTTCT+TGG + chr1_4:60503639-60503658 None:intergenic 35.0%
! ACTTGAAAAAGCACAATGTG+AGG - chr1_4:60503645-60503664 Msa0174730:intron 35.0%
! CTTGAAAAAGCACAATGTGA+GGG - chr1_4:60503646-60503665 Msa0174730:intron 35.0%
TTCAACATTGCTGAGAATGA+GGG - chr1_4:60503725-60503744 Msa0174730:intron 35.0%
AGATCTTGTTCTCTATCTTG+AGG - chr1_4:60503764-60503783 Msa0174730:CDS 35.0%
AAAGCAATTACACCACCTAA+TGG + chr1_4:60503796-60503815 None:intergenic 35.0%
ATTAGGTGGTGTAATTGCTT+TGG - chr1_4:60503795-60503814 Msa0174730:CDS 35.0%
CAGTTATTTATATGCTGGCA+TGG - chr1_4:60503946-60503965 Msa0174730:CDS 35.0%
! TATGTTCTGCACCTTTTAGT+TGG - chr1_4:60503976-60503995 Msa0174730:five_prime_UTR 35.0%
! AATATAAACTCGGGAGGTTT+TGG - chr1_4:60502489-60502508 Msa0174730:three_prime_UTR 35.0%
! TTCCTGATGATGCAAAACTA+GGG + chr1_4:60502525-60502544 None:intergenic 35.0%
! TTTTGCATCATCAGGAAGAA+GGG - chr1_4:60502528-60502547 Msa0174730:three_prime_UTR 35.0%
TCCATAATCTTATCCTCAAC+TGG + chr1_4:60502631-60502650 None:intergenic 35.0%
!! ATTAAAGTTGGTGGTAAAGC+TGG - chr1_4:60502685-60502704 Msa0174730:three_prime_UTR 35.0%
TTTGTCACGAGTAACAGTAA+CGG + chr1_4:60502725-60502744 None:intergenic 35.0%
!! CCTTTTGGAGAAATTGCTAT+CGG + chr1_4:60502767-60502786 None:intergenic 35.0%
!! ATGTGGCTTTGAAATGTTGA+TGG - chr1_4:60502892-60502911 Msa0174730:CDS 35.0%
ATTGAATATTGAGACAGTGC+TGG - chr1_4:60502923-60502942 Msa0174730:intron 35.0%
! CGTAGGTTTTCCCAAAATTA+TGG - chr1_4:60503064-60503083 Msa0174730:intron 35.0%
TGTCATGAGAATCCTTAAGT+TGG + chr1_4:60503295-60503314 None:intergenic 35.0%
! GCGAGTATGATTTGTGTAAA+TGG - chr1_4:60503331-60503350 Msa0174730:intron 35.0%
! ATGATTTGTGTAAATGGTCC+TGG - chr1_4:60503337-60503356 Msa0174730:intron 35.0%
ACAGGAATACTAGACAATAG+TGG + chr1_4:60503366-60503385 None:intergenic 35.0%
GGACAAAAATAATCACACGA+AGG + chr1_4:60503577-60503596 None:intergenic 35.0%
!!! GTGCTTTTTCAAGTACTTCT+TGG + chr1_4:60503639-60503658 None:intergenic 35.0%
! ACTTGAAAAAGCACAATGTG+AGG - chr1_4:60503645-60503664 Msa0174730:intron 35.0%
! CTTGAAAAAGCACAATGTGA+GGG - chr1_4:60503646-60503665 Msa0174730:intron 35.0%
TTCAACATTGCTGAGAATGA+GGG - chr1_4:60503725-60503744 Msa0174730:intron 35.0%
AGATCTTGTTCTCTATCTTG+AGG - chr1_4:60503764-60503783 Msa0174730:CDS 35.0%
AAAGCAATTACACCACCTAA+TGG + chr1_4:60503796-60503815 None:intergenic 35.0%
ATTAGGTGGTGTAATTGCTT+TGG - chr1_4:60503795-60503814 Msa0174730:CDS 35.0%
CAGTTATTTATATGCTGGCA+TGG - chr1_4:60503946-60503965 Msa0174730:CDS 35.0%
! TATGTTCTGCACCTTTTAGT+TGG - chr1_4:60503976-60503995 Msa0174730:five_prime_UTR 35.0%
!!! AACCCTAGTTTTGCATCATC+AGG - chr1_4:60502520-60502539 Msa0174730:three_prime_UTR 40.0%
! CTTCCTGATGATGCAAAACT+AGG + chr1_4:60502526-60502545 None:intergenic 40.0%
! GTTTTGCATCATCAGGAAGA+AGG - chr1_4:60502527-60502546 Msa0174730:three_prime_UTR 40.0%
TTTGCATCATCAGGAAGAAG+GGG - chr1_4:60502529-60502548 Msa0174730:three_prime_UTR 40.0%
GCCAGTTGAGGATAAGATTA+TGG - chr1_4:60502627-60502646 Msa0174730:three_prime_UTR 40.0%
CTTCAGGAGAGGATTAAAGT+TGG - chr1_4:60502673-60502692 Msa0174730:three_prime_UTR 40.0%
TTTGGAGAAATTGCTATCGG+AGG + chr1_4:60502764-60502783 None:intergenic 40.0%
CCGATAGCAATTTCTCCAAA+AGG - chr1_4:60502764-60502783 Msa0174730:exon 40.0%
TTAGTGTATGTTTGGATGGG+TGG - chr1_4:60503007-60503026 Msa0174730:intron 40.0%
TGGGAAAACCTACGAATTCA+GGG + chr1_4:60503058-60503077 None:intergenic 40.0%
TTGGGAAAACCTACGAATTC+AGG + chr1_4:60503059-60503078 None:intergenic 40.0%
AGGTCTAGTTGTTGCTGTAT+GGG - chr1_4:60503206-60503225 Msa0174730:intron 40.0%
GAAAATGCCATTACCAGTCT+TGG - chr1_4:60503242-60503261 Msa0174730:intron 40.0%
!! TGAGAATCCTTAAGTTGGCA+CGG + chr1_4:60503290-60503309 None:intergenic 40.0%
!! TGGCAAAGGTAGTGTTGATT+AGG + chr1_4:60503598-60503617 None:intergenic 40.0%
TAATCAACACTACCTTTGCC+AGG - chr1_4:60503597-60503616 Msa0174730:intron 40.0%
GTACTTCAAATACCTGGCAA+AGG + chr1_4:60503612-60503631 None:intergenic 40.0%
GGTCAAGTACTTCAAATACC+TGG + chr1_4:60503618-60503637 None:intergenic 40.0%
! AAAAGCACAATGTGAGGGAT+TGG - chr1_4:60503651-60503670 Msa0174730:intron 40.0%
! TCGTGTTATTGCATCCAACA+AGG - chr1_4:60503676-60503695 Msa0174730:intron 40.0%
ATAGATATTGCGGTCCTTGT+TGG + chr1_4:60503693-60503712 None:intergenic 40.0%
CTTCAACATTGCTGAGAATG+AGG - chr1_4:60503724-60503743 Msa0174730:intron 40.0%
! ATCTTGAGGCATTCTCCATT+AGG - chr1_4:60503778-60503797 Msa0174730:CDS 40.0%
!!! AACCCTAGTTTTGCATCATC+AGG - chr1_4:60502520-60502539 Msa0174730:three_prime_UTR 40.0%
! CTTCCTGATGATGCAAAACT+AGG + chr1_4:60502526-60502545 None:intergenic 40.0%
! GTTTTGCATCATCAGGAAGA+AGG - chr1_4:60502527-60502546 Msa0174730:three_prime_UTR 40.0%
TTTGCATCATCAGGAAGAAG+GGG - chr1_4:60502529-60502548 Msa0174730:three_prime_UTR 40.0%
GCCAGTTGAGGATAAGATTA+TGG - chr1_4:60502627-60502646 Msa0174730:three_prime_UTR 40.0%
CTTCAGGAGAGGATTAAAGT+TGG - chr1_4:60502673-60502692 Msa0174730:three_prime_UTR 40.0%
TTTGGAGAAATTGCTATCGG+AGG + chr1_4:60502764-60502783 None:intergenic 40.0%
CCGATAGCAATTTCTCCAAA+AGG - chr1_4:60502764-60502783 Msa0174730:exon 40.0%
TTAGTGTATGTTTGGATGGG+TGG - chr1_4:60503007-60503026 Msa0174730:intron 40.0%
TGGGAAAACCTACGAATTCA+GGG + chr1_4:60503058-60503077 None:intergenic 40.0%
TTGGGAAAACCTACGAATTC+AGG + chr1_4:60503059-60503078 None:intergenic 40.0%
AGGTCTAGTTGTTGCTGTAT+GGG - chr1_4:60503206-60503225 Msa0174730:intron 40.0%
GAAAATGCCATTACCAGTCT+TGG - chr1_4:60503242-60503261 Msa0174730:intron 40.0%
!! TGAGAATCCTTAAGTTGGCA+CGG + chr1_4:60503290-60503309 None:intergenic 40.0%
!! TGGCAAAGGTAGTGTTGATT+AGG + chr1_4:60503598-60503617 None:intergenic 40.0%
TAATCAACACTACCTTTGCC+AGG - chr1_4:60503597-60503616 Msa0174730:intron 40.0%
GTACTTCAAATACCTGGCAA+AGG + chr1_4:60503612-60503631 None:intergenic 40.0%
GGTCAAGTACTTCAAATACC+TGG + chr1_4:60503618-60503637 None:intergenic 40.0%
! AAAAGCACAATGTGAGGGAT+TGG - chr1_4:60503651-60503670 Msa0174730:intron 40.0%
! TCGTGTTATTGCATCCAACA+AGG - chr1_4:60503676-60503695 Msa0174730:intron 40.0%
ATAGATATTGCGGTCCTTGT+TGG + chr1_4:60503693-60503712 None:intergenic 40.0%
CTTCAACATTGCTGAGAATG+AGG - chr1_4:60503724-60503743 Msa0174730:intron 40.0%
! ATCTTGAGGCATTCTCCATT+AGG - chr1_4:60503778-60503797 Msa0174730:CDS 40.0%
!!! ACTCGGGAGGTTTTGGATTA+CGG - chr1_4:60502496-60502515 Msa0174730:three_prime_UTR 45.0%
TTGCATCATCAGGAAGAAGG+GGG - chr1_4:60502530-60502549 Msa0174730:three_prime_UTR 45.0%
AGTCTCAACGCGAAAATGAG+CGG - chr1_4:60502556-60502575 Msa0174730:three_prime_UTR 45.0%
GGAGTGAAGGGTAAGAAGAA+GGG - chr1_4:60502577-60502596 Msa0174730:three_prime_UTR 45.0%
TTCCCTGGAGAAGTTTCTTC+AGG - chr1_4:60502657-60502676 Msa0174730:three_prime_UTR 45.0%
CTCCTGAAGAAACTTCTCCA+GGG + chr1_4:60502662-60502681 None:intergenic 45.0%
TCTCCTGAAGAAACTTCTCC+AGG + chr1_4:60502663-60502682 None:intergenic 45.0%
TGGAGAAGTTTCTTCAGGAG+AGG - chr1_4:60502662-60502681 Msa0174730:three_prime_UTR 45.0%
CAGGAGAGGATTAAAGTTGG+TGG - chr1_4:60502676-60502695 Msa0174730:three_prime_UTR 45.0%
ATCGGAGGTAACAGTGATCT+TGG + chr1_4:60502749-60502768 None:intergenic 45.0%
ACAGCAACAACTAGACCTCA+CGG + chr1_4:60503204-60503223 None:intergenic 45.0%
GAGGTCTAGTTGTTGCTGTA+TGG - chr1_4:60503205-60503224 Msa0174730:intron 45.0%
TCACAAGCCAAGACTGGTAA+TGG + chr1_4:60503252-60503271 None:intergenic 45.0%
CAAACATCACAAGCCAAGAC+TGG + chr1_4:60503258-60503277 None:intergenic 45.0%
!! GAGAATCCTTAAGTTGGCAC+GGG + chr1_4:60503289-60503308 None:intergenic 45.0%
!! ACTAGACAATAGTGGACACC+AGG + chr1_4:60503358-60503377 None:intergenic 45.0%
TTCTGGTGCAGTTACTGAAC+TGG - chr1_4:60503414-60503433 Msa0174730:intron 45.0%
! TTGAGGCATTCTCCATTAGG+TGG - chr1_4:60503781-60503800 Msa0174730:CDS 45.0%
!!! ACTCGGGAGGTTTTGGATTA+CGG - chr1_4:60502496-60502515 Msa0174730:three_prime_UTR 45.0%
TTGCATCATCAGGAAGAAGG+GGG - chr1_4:60502530-60502549 Msa0174730:three_prime_UTR 45.0%
AGTCTCAACGCGAAAATGAG+CGG - chr1_4:60502556-60502575 Msa0174730:three_prime_UTR 45.0%
GGAGTGAAGGGTAAGAAGAA+GGG - chr1_4:60502577-60502596 Msa0174730:three_prime_UTR 45.0%
TTCCCTGGAGAAGTTTCTTC+AGG - chr1_4:60502657-60502676 Msa0174730:three_prime_UTR 45.0%
CTCCTGAAGAAACTTCTCCA+GGG + chr1_4:60502662-60502681 None:intergenic 45.0%
TCTCCTGAAGAAACTTCTCC+AGG + chr1_4:60502663-60502682 None:intergenic 45.0%
TGGAGAAGTTTCTTCAGGAG+AGG - chr1_4:60502662-60502681 Msa0174730:three_prime_UTR 45.0%
CAGGAGAGGATTAAAGTTGG+TGG - chr1_4:60502676-60502695 Msa0174730:three_prime_UTR 45.0%
ATCGGAGGTAACAGTGATCT+TGG + chr1_4:60502749-60502768 None:intergenic 45.0%
ACAGCAACAACTAGACCTCA+CGG + chr1_4:60503204-60503223 None:intergenic 45.0%
GAGGTCTAGTTGTTGCTGTA+TGG - chr1_4:60503205-60503224 Msa0174730:intron 45.0%
TCACAAGCCAAGACTGGTAA+TGG + chr1_4:60503252-60503271 None:intergenic 45.0%
CAAACATCACAAGCCAAGAC+TGG + chr1_4:60503258-60503277 None:intergenic 45.0%
!! GAGAATCCTTAAGTTGGCAC+GGG + chr1_4:60503289-60503308 None:intergenic 45.0%
!! ACTAGACAATAGTGGACACC+AGG + chr1_4:60503358-60503377 None:intergenic 45.0%
TTCTGGTGCAGTTACTGAAC+TGG - chr1_4:60503414-60503433 Msa0174730:intron 45.0%
! TTGAGGCATTCTCCATTAGG+TGG - chr1_4:60503781-60503800 Msa0174730:CDS 45.0%
GCGAAAATGAGCGGAGTGAA+GGG - chr1_4:60502565-60502584 Msa0174730:three_prime_UTR 50.0%
CGGAGTGAAGGGTAAGAAGA+AGG - chr1_4:60502576-60502595 Msa0174730:three_prime_UTR 50.0%
GATTATGGACATCGCTTCCC+TGG - chr1_4:60502642-60502661 Msa0174730:three_prime_UTR 50.0%
CGTTAGCACCCTGAATTCGT+AGG - chr1_4:60503047-60503066 Msa0174730:intron 50.0%
TGCATTCCCGTGCCAACTTA+AGG - chr1_4:60503280-60503299 Msa0174730:intron 50.0%
!! CTGCTCTGGGAACTCGAATT+TGG + chr1_4:60504028-60504047 None:intergenic 50.0%
! CAAATTCGAGTTCCCAGAGC+AGG - chr1_4:60504026-60504045 Msa0174730:five_prime_UTR 50.0%
GCGAAAATGAGCGGAGTGAA+GGG - chr1_4:60502565-60502584 Msa0174730:three_prime_UTR 50.0%
CGGAGTGAAGGGTAAGAAGA+AGG - chr1_4:60502576-60502595 Msa0174730:three_prime_UTR 50.0%
GATTATGGACATCGCTTCCC+TGG - chr1_4:60502642-60502661 Msa0174730:three_prime_UTR 50.0%
CGTTAGCACCCTGAATTCGT+AGG - chr1_4:60503047-60503066 Msa0174730:intron 50.0%
TGCATTCCCGTGCCAACTTA+AGG - chr1_4:60503280-60503299 Msa0174730:intron 50.0%
!! CTGCTCTGGGAACTCGAATT+TGG + chr1_4:60504028-60504047 None:intergenic 50.0%
! CAAATTCGAGTTCCCAGAGC+AGG - chr1_4:60504026-60504045 Msa0174730:five_prime_UTR 50.0%
CGCGAAAATGAGCGGAGTGA+AGG - chr1_4:60502564-60502583 Msa0174730:three_prime_UTR 55.0%
GGTGGTAAAGCTGGTGCTCT+CGG - chr1_4:60502694-60502713 Msa0174730:three_prime_UTR 55.0%
CGCGAAAATGAGCGGAGTGA+AGG - chr1_4:60502564-60502583 Msa0174730:three_prime_UTR 55.0%
GGTGGTAAAGCTGGTGCTCT+CGG - chr1_4:60502694-60502713 Msa0174730:three_prime_UTR 55.0%
CGATTGCGCGAAGCCAGTTG+AGG - chr1_4:60502615-60502634 Msa0174730:three_prime_UTR 60.0%
CGATTGCGCGAAGCCAGTTG+AGG - chr1_4:60502615-60502634 Msa0174730:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 60502485 60504055 60502485 ID=Msa0174730;Name=Msa0174730
chr1_4 mRNA 60502485 60504055 60502485 ID=Msa0174730-mRNA-1;Parent=Msa0174730;Name=Msa0174730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|2|292|119
chr1_4 exon 60502485 60502921 60502485 ID=Msa0174730-mRNA-1:exon:19180;Parent=Msa0174730-mRNA-1
chr1_4 exon 60503755 60504055 60503755 ID=Msa0174730-mRNA-1:exon:19179;Parent=Msa0174730-mRNA-1
chr1_4 five_prime_UTR 60503970 60504055 60503970 ID=Msa0174730-mRNA-1:five_prime_utr;Parent=Msa0174730-mRNA-1
chr1_4 CDS 60503755 60503969 60503755 ID=Msa0174730-mRNA-1:cds;Parent=Msa0174730-mRNA-1
chr1_4 CDS 60502777 60502921 60502777 ID=Msa0174730-mRNA-1:cds;Parent=Msa0174730-mRNA-1
chr1_4 three_prime_UTR 60502485 60502776 60502485 ID=Msa0174730-mRNA-1:three_prime_utr;Parent=Msa0174730-mRNA-1
Gene Sequence

>Msa0174730

ATGAGCGGAGTGAAGGGTAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCGCGAAGCCAGTTGAGGATAAGATTATGGACATCGCTTCCCTGGAGAAGTTTCTTCAGGAGAGGATTAAAGTTGGTGGTAAAGCTGGTGCTCTCGGTGATTCCGTTACTGTTACTCGTGACAAATCCAAGATCACTGTTACCTCCGATAGCAATTTCTCCAAAAGGTATTTGAAGTACTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGTGTTATTGCATCCAACAAGGACCGCAATATCTATGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAAGATGAAGACTAA

Protein sequence

>Msa0174730

MSGVKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEGEDED*