Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046240 | sp|P22195|PER1_ARAHY | 65.217 | 322 | 105 | 5 | 1 | 321 | 1 | 316 | 1.87e-149 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045850 | Msa0046240 | 0.905663 | 3.384422e-80 | -8.615850e-47 |
| Msa0046240 | Msa0048950 | 0.823360 | 1.444221e-53 | -8.615850e-47 |
| Msa0046240 | Msa0059880 | 0.840039 | 1.105538e-57 | -8.615850e-47 |
| Msa0046240 | Msa0139460 | 0.910484 | 1.779626e-82 | -8.615850e-47 |
| Msa0046240 | Msa0140270 | 0.801161 | 1.025783e-48 | -8.615850e-47 |
| Msa0046240 | Msa0147670 | 0.801218 | 9.986504e-49 | -8.615850e-47 |
| Msa0046240 | Msa0150910 | 0.810179 | 1.310622e-50 | -8.615850e-47 |
| Msa0046240 | Msa0212550 | 0.815186 | 1.051521e-51 | -8.615850e-47 |
| Msa0046240 | Msa0223880 | 0.814767 | 1.302652e-51 | -8.615850e-47 |
| Msa0046240 | Msa0252930 | 0.813937 | 1.987273e-51 | -8.615850e-47 |
| Msa0046240 | Msa0265060 | 0.810561 | 1.084080e-50 | -8.615850e-47 |
| Msa0046240 | Msa0266640 | 0.802830 | 4.656408e-49 | -8.615850e-47 |
| Msa0046240 | Msa0278950 | 0.805750 | 1.148005e-49 | -8.615850e-47 |
| Msa0046240 | Msa0295980 | 0.807236 | 5.577292e-50 | -8.615850e-47 |
| Msa0046240 | Msa0334050 | 0.805015 | 1.636723e-49 | -8.615850e-47 |
| Msa0046240 | Msa0340650 | 0.811763 | 5.949131e-51 | -8.615850e-47 |
| Msa0046240 | Msa0469550 | 0.810774 | 9.752489e-51 | -8.615850e-47 |
| Msa0046240 | Msa0515260 | 0.816672 | 4.901205e-52 | -8.615850e-47 |
| Msa0046240 | Msa0533510 | 0.800305 | 1.533600e-48 | -8.615850e-47 |
| Msa0046240 | Msa0538450 | 0.804463 | 2.134612e-49 | -8.615850e-47 |
| Msa0046240 | Msa0543740 | 0.804600 | 1.998561e-49 | -8.615850e-47 |
| Msa0046240 | Msa0548970 | 0.832832 | 7.549471e-56 | -8.615850e-47 |
| Msa0046240 | Msa0603950 | 0.828553 | 8.434393e-55 | -8.615850e-47 |
| Msa0046240 | Msa0605470 | 0.800836 | 1.195489e-48 | -8.615850e-47 |
| Msa0046240 | Msa0678620 | 0.831425 | 1.681360e-55 | -8.615850e-47 |
| Msa0046240 | Msa0684720 | 0.829286 | 5.604633e-55 | -8.615850e-47 |
| Msa0046240 | Msa0727480 | 0.822629 | 2.139109e-53 | -8.615850e-47 |
| Msa0046240 | Msa0735280 | 0.810456 | 1.142488e-50 | -8.615850e-47 |
| Msa0046240 | Msa0768670 | 0.808130 | 3.603079e-50 | -8.615850e-47 |
| Msa0046240 | Msa0768720 | 0.800249 | 1.574707e-48 | -8.615850e-47 |
| Msa0046240 | Msa0777070 | 0.828415 | 9.108146e-55 | -8.615850e-47 |
| Msa0046240 | Msa0777250 | 0.815168 | 1.061360e-51 | -8.615850e-47 |
| Msa0046240 | Msa0814160 | 0.802609 | 5.173733e-49 | -8.615850e-47 |
| Msa0046240 | Msa0834270 | 0.811119 | 8.211640e-51 | -8.615850e-47 |
| Msa0046240 | Msa0854840 | 0.832056 | 1.174828e-55 | -8.615850e-47 |
| Msa0046240 | Msa0883640 | 0.844180 | 8.865630e-59 | -8.615850e-47 |
| Msa0046240 | Msa0910830 | 0.840000 | 1.131440e-57 | -8.615850e-47 |
| Msa0046240 | Msa0951150 | 0.803024 | 4.245904e-49 | -8.615850e-47 |
| Msa0046240 | Msa0960090 | 0.845947 | 2.954074e-59 | -8.615850e-47 |
| Msa0046240 | Msa0967820 | 0.939362 | 1.443318e-99 | -8.615850e-47 |
| Msa0046240 | Msa0985700 | 0.844179 | 8.873398e-59 | -8.615850e-47 |
| Msa0046240 | Msa1021620 | 0.814638 | 1.391652e-51 | -8.615850e-47 |
| Msa0046240 | Msa1024350 | 0.835851 | 1.319203e-56 | -8.615850e-47 |
| Msa0046240 | Msa1061670 | 0.800610 | 1.329572e-48 | -8.615850e-47 |
| Msa0046240 | Msa1109880 | 0.805876 | 1.080251e-49 | -8.615850e-47 |
| Msa0046240 | Msa1109890 | 0.836887 | 7.191265e-57 | -8.615850e-47 |
| Msa0046240 | Msa1207480 | 0.800970 | 1.122377e-48 | -8.615850e-47 |
| Msa0046240 | Msa1216600 | 0.816965 | 4.213559e-52 | -8.615850e-47 |
| Msa0046240 | Msa1269050 | 0.800736 | 1.253176e-48 | -8.615850e-47 |
| Msa0046240 | Msa1296870 | 0.833078 | 6.557173e-56 | -8.615850e-47 |
| Msa0046240 | Msa1300610 | 0.813491 | 2.491412e-51 | -8.615850e-47 |
| Msa0046240 | Msa1323030 | 0.833725 | 4.522939e-56 | -8.615850e-47 |
| Msa0046240 | Msa1323120 | 0.800290 | 1.544815e-48 | -8.615850e-47 |
| Msa0046240 | Msa1323160 | 0.819687 | 1.018787e-52 | -8.615850e-47 |
| Msa0046240 | Msa1357490 | 0.808706 | 2.715359e-50 | -8.615850e-47 |
| Msa0046240 | Msa1357860 | 0.813833 | 2.095616e-51 | -8.615850e-47 |
| Msa0046240 | Msa1393440 | 0.810218 | 1.285883e-50 | -8.615850e-47 |
| Msa0046240 | Msa1407670 | 0.805209 | 1.490973e-49 | -8.615850e-47 |
| Msa0046240 | Msa1426420 | 0.815980 | 6.999628e-52 | -8.615850e-47 |
| Msa0046240 | Msa1449770 | 0.803422 | 3.512764e-49 | -8.615850e-47 |
| Msa0046240 | Msa1459610 | 0.850362 | 1.783960e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046240 | MtrunA17_Chr1g0213061 | 96.061 | 330 | 12 | 1 | 1 | 329 | 1 | 330 | 0.0 | 653 |
| Msa0046240 | MtrunA17_Chr7g0224371 | 63.303 | 327 | 111 | 5 | 1 | 322 | 1 | 323 | 1.71e-141 | 402 |
| Msa0046240 | MtrunA17_Chr7g0244461 | 60.383 | 313 | 119 | 4 | 10 | 321 | 4 | 312 | 4.28e-136 | 389 |
| Msa0046240 | MtrunA17_Chr7g0244451 | 60.870 | 322 | 119 | 5 | 1 | 321 | 1 | 316 | 2.25e-134 | 384 |
| Msa0046240 | MtrunA17_Chr4g0013201 | 58.900 | 309 | 123 | 3 | 14 | 321 | 33 | 338 | 1.22e-128 | 370 |
| Msa0046240 | MtrunA17_Chr4g0013191 | 61.921 | 302 | 108 | 5 | 24 | 321 | 42 | 340 | 8.08e-128 | 369 |
| Msa0046240 | MtrunA17_Chr2g0320071 | 57.006 | 314 | 131 | 3 | 9 | 321 | 7 | 317 | 2.19e-124 | 359 |
| Msa0046240 | MtrunA17_Chr2g0320101 | 55.312 | 320 | 139 | 3 | 3 | 321 | 1 | 317 | 1.34e-123 | 357 |
| Msa0046240 | MtrunA17_Chr3g0129051 | 57.188 | 313 | 127 | 5 | 9 | 318 | 11 | 319 | 2.41e-123 | 357 |
| Msa0046240 | MtrunA17_Chr2g0320061 | 55.000 | 320 | 141 | 2 | 3 | 321 | 1 | 318 | 2.53e-122 | 354 |
| Msa0046240 | MtrunA17_Chr3g0106901 | 58.385 | 322 | 130 | 3 | 1 | 321 | 5 | 323 | 2.07e-120 | 349 |
| Msa0046240 | MtrunA17_Chr2g0320051 | 54.375 | 320 | 143 | 2 | 3 | 321 | 1 | 318 | 8.52e-120 | 347 |
| Msa0046240 | MtrunA17_Chr3g0114451 | 54.140 | 314 | 140 | 3 | 9 | 321 | 8 | 318 | 1.49e-119 | 347 |
| Msa0046240 | MtrunA17_Chr3g0129061 | 58.387 | 310 | 122 | 5 | 12 | 318 | 14 | 319 | 5.30e-119 | 345 |
| Msa0046240 | MtrunA17_Chr2g0320091 | 54.206 | 321 | 142 | 4 | 3 | 321 | 1 | 318 | 3.15e-116 | 338 |
| Msa0046240 | MtrunA17_Chr3g0106921 | 53.628 | 317 | 139 | 5 | 9 | 321 | 8 | 320 | 7.56e-116 | 337 |
| Msa0046240 | MtrunA17_Chr3g0129041 | 57.143 | 315 | 129 | 4 | 10 | 321 | 11 | 322 | 1.56e-115 | 337 |
| Msa0046240 | MtrunA17_Chr2g0320031 | 52.648 | 321 | 148 | 3 | 3 | 321 | 1 | 319 | 6.27e-115 | 335 |
| Msa0046240 | MtrunA17_Chr5g0432441 | 52.280 | 329 | 146 | 5 | 1 | 321 | 1 | 326 | 7.26e-114 | 333 |
| Msa0046240 | MtrunA17_Chr5g0438021 | 54.747 | 316 | 134 | 6 | 9 | 321 | 16 | 325 | 4.20e-113 | 331 |
| Msa0046240 | MtrunA17_Chr5g0432351 | 53.459 | 318 | 140 | 6 | 9 | 321 | 7 | 321 | 3.67e-112 | 328 |
| Msa0046240 | MtrunA17_Chr5g0432341 | 53.459 | 318 | 140 | 6 | 9 | 321 | 7 | 321 | 1.20e-111 | 327 |
| Msa0046240 | MtrunA17_Chr4g0013171 | 50.949 | 316 | 149 | 4 | 9 | 321 | 9 | 321 | 5.58e-110 | 323 |
| Msa0046240 | MtrunA17_Chr5g0432331 | 51.572 | 318 | 144 | 6 | 9 | 321 | 40 | 352 | 6.65e-108 | 318 |
| Msa0046240 | MtrunA17_Chr3g0107881 | 49.080 | 326 | 159 | 5 | 1 | 321 | 1 | 324 | 1.33e-107 | 317 |
| Msa0046240 | MtrunA17_Chr4g0038151 | 51.534 | 326 | 148 | 6 | 1 | 321 | 1 | 321 | 6.03e-107 | 315 |
| Msa0046240 | MtrunA17_Chr4g0013181 | 52.881 | 295 | 133 | 4 | 30 | 321 | 62 | 353 | 1.75e-105 | 312 |
| Msa0046240 | MtrunA17_Chr4g0038161 | 51.227 | 326 | 148 | 6 | 1 | 321 | 1 | 320 | 3.32e-105 | 310 |
| Msa0046240 | MtrunA17_Chr4g0038171 | 50.613 | 326 | 151 | 5 | 1 | 321 | 1 | 321 | 3.67e-105 | 310 |
| Msa0046240 | MtrunA17_Chr4g0043391 | 50.307 | 326 | 152 | 5 | 1 | 321 | 4 | 324 | 4.23e-105 | 310 |
| Msa0046240 | MtrunA17_Chr5g0402581 | 45.897 | 329 | 167 | 4 | 1 | 321 | 1 | 326 | 6.64e-97 | 290 |
| Msa0046240 | MtrunA17_Chr5g0402571 | 44.681 | 329 | 171 | 4 | 1 | 321 | 1 | 326 | 6.61e-95 | 284 |
| Msa0046240 | MtrunA17_Chr7g0258811 | 44.308 | 325 | 168 | 6 | 9 | 322 | 50 | 372 | 4.38e-93 | 281 |
| Msa0046240 | MtrunA17_Chr5g0404721 | 47.195 | 303 | 150 | 3 | 27 | 321 | 30 | 330 | 6.53e-93 | 280 |
| Msa0046240 | MtrunA17_Chr1g0175561 | 46.296 | 324 | 157 | 7 | 9 | 322 | 11 | 327 | 7.96e-93 | 279 |
| Msa0046240 | MtrunA17_Chr8g0372601 | 45.687 | 313 | 160 | 3 | 17 | 321 | 20 | 330 | 2.43e-92 | 278 |
| Msa0046240 | MtrunA17_Chr2g0292211 | 46.624 | 311 | 155 | 5 | 23 | 324 | 36 | 344 | 6.13e-91 | 276 |
| Msa0046240 | MtrunA17_Chr2g0292181 | 45.981 | 311 | 157 | 4 | 23 | 324 | 34 | 342 | 1.10e-89 | 272 |
| Msa0046240 | MtrunA17_Chr2g0292151 | 45.659 | 311 | 158 | 4 | 23 | 324 | 25 | 333 | 1.86e-89 | 271 |
| Msa0046240 | MtrunA17_Chr2g0291751 | 45.253 | 316 | 162 | 4 | 18 | 324 | 20 | 333 | 3.59e-89 | 271 |
| Msa0046240 | MtrunA17_Chr5g0400331 | 47.302 | 315 | 149 | 5 | 21 | 321 | 20 | 331 | 7.93e-89 | 269 |
| Msa0046240 | MtrunA17_Chr1g0155611 | 46.711 | 304 | 151 | 4 | 27 | 321 | 46 | 347 | 1.44e-88 | 269 |
| Msa0046240 | MtrunA17_Chr4g0070951 | 42.769 | 325 | 171 | 5 | 9 | 322 | 10 | 330 | 1.54e-88 | 268 |
| Msa0046240 | MtrunA17_Chr2g0292111 | 45.338 | 311 | 159 | 4 | 23 | 324 | 25 | 333 | 2.47e-88 | 269 |
| Msa0046240 | MtrunA17_Chr2g0292251 | 44.984 | 309 | 159 | 4 | 25 | 324 | 26 | 332 | 5.15e-87 | 265 |
| Msa0046240 | MtrunA17_Chr2g0292091 | 43.168 | 322 | 171 | 5 | 13 | 324 | 9 | 328 | 5.91e-87 | 265 |
| Msa0046240 | MtrunA17_Chr2g0292241 | 43.077 | 325 | 171 | 5 | 12 | 324 | 11 | 333 | 2.32e-86 | 263 |
| Msa0046240 | MtrunA17_Chr2g0299691 | 44.411 | 331 | 166 | 7 | 5 | 322 | 34 | 359 | 8.01e-86 | 262 |
| Msa0046240 | MtrunA17_Chr2g0292261 | 43.243 | 333 | 178 | 5 | 5 | 328 | 7 | 337 | 1.86e-84 | 259 |
| Msa0046240 | MtrunA17_Chr4g0068621 | 45.098 | 306 | 160 | 3 | 22 | 321 | 33 | 336 | 1.98e-84 | 258 |
| Msa0046240 | MtrunA17_Chr2g0292101 | 43.750 | 320 | 168 | 6 | 15 | 324 | 12 | 329 | 6.35e-84 | 257 |
| Msa0046240 | MtrunA17_Chr2g0292271 | 44.051 | 311 | 163 | 4 | 23 | 324 | 25 | 333 | 1.33e-83 | 256 |
| Msa0046240 | MtrunA17_Chr5g0432401 | 43.533 | 317 | 130 | 7 | 9 | 320 | 13 | 285 | 9.06e-83 | 252 |
| Msa0046240 | MtrunA17_Chr6g0477071 | 41.587 | 315 | 174 | 7 | 9 | 321 | 36 | 342 | 3.75e-82 | 252 |
| Msa0046240 | MtrunA17_Chr1g0188431 | 41.104 | 326 | 177 | 7 | 1 | 321 | 12 | 327 | 4.74e-82 | 251 |
| Msa0046240 | MtrunA17_Chr3g0128061 | 41.796 | 323 | 176 | 5 | 9 | 322 | 8 | 327 | 1.60e-80 | 248 |
| Msa0046240 | MtrunA17_Chr2g0279041 | 41.566 | 332 | 176 | 6 | 1 | 321 | 1 | 325 | 4.72e-79 | 244 |
| Msa0046240 | MtrunA17_Chr4g0013721 | 42.857 | 308 | 162 | 5 | 22 | 321 | 95 | 396 | 6.65e-79 | 246 |
| Msa0046240 | MtrunA17_Chr5g0421411 | 44.718 | 284 | 143 | 7 | 50 | 321 | 4 | 285 | 2.00e-78 | 241 |
| Msa0046240 | MtrunA17_Chr2g0292291 | 43.590 | 312 | 164 | 6 | 23 | 324 | 26 | 335 | 7.43e-78 | 242 |
| Msa0046240 | MtrunA17_Chr2g0322861 | 40.810 | 321 | 177 | 6 | 10 | 321 | 70 | 386 | 1.68e-77 | 242 |
| Msa0046240 | MtrunA17_Chr4g0013821 | 41.558 | 308 | 166 | 5 | 23 | 322 | 24 | 325 | 5.29e-77 | 239 |
| Msa0046240 | MtrunA17_Chr4g0024121 | 40.248 | 323 | 178 | 7 | 10 | 321 | 8 | 326 | 1.79e-76 | 237 |
| Msa0046240 | MtrunA17_Chr1g0204011 | 41.463 | 328 | 179 | 6 | 1 | 321 | 1 | 322 | 4.39e-76 | 236 |
| Msa0046240 | MtrunA17_Chr1g0157051 | 38.838 | 327 | 181 | 8 | 3 | 320 | 1 | 317 | 1.07e-74 | 233 |
| Msa0046240 | MtrunA17_Chr1g0164891 | 42.904 | 303 | 158 | 7 | 31 | 321 | 93 | 392 | 1.47e-74 | 234 |
| Msa0046240 | MtrunA17_Chr7g0254201 | 42.053 | 302 | 163 | 6 | 25 | 321 | 18 | 312 | 7.28e-74 | 230 |
| Msa0046240 | MtrunA17_Chr1g0194151 | 39.692 | 325 | 179 | 7 | 10 | 321 | 13 | 333 | 8.63e-74 | 231 |
| Msa0046240 | MtrunA17_Chr7g0268501 | 40.557 | 323 | 175 | 7 | 9 | 321 | 5 | 320 | 2.36e-73 | 229 |
| Msa0046240 | MtrunA17_Chr7g0268521 | 40.557 | 323 | 175 | 7 | 9 | 321 | 5 | 320 | 2.36e-73 | 229 |
| Msa0046240 | MtrunA17_Chr1g0194271 | 39.577 | 331 | 178 | 6 | 10 | 321 | 13 | 340 | 8.95e-73 | 228 |
| Msa0046240 | MtrunA17_Chr5g0405991 | 40.498 | 321 | 171 | 8 | 10 | 321 | 7 | 316 | 3.88e-72 | 226 |
| Msa0046240 | MtrunA17_Chr6g0460711 | 40.252 | 318 | 179 | 7 | 11 | 323 | 5 | 316 | 1.50e-71 | 224 |
| Msa0046240 | MtrunA17_Chr8g0371381 | 39.871 | 311 | 166 | 7 | 21 | 321 | 20 | 319 | 6.94e-70 | 220 |
| Msa0046240 | MtrunA17_Chr4g0063671 | 40.184 | 326 | 172 | 8 | 8 | 321 | 6 | 320 | 3.31e-69 | 218 |
| Msa0046240 | MtrunA17_Chr2g0296621 | 40.132 | 304 | 163 | 7 | 27 | 322 | 50 | 342 | 7.66e-69 | 218 |
| Msa0046240 | MtrunA17_Chr7g0254231 | 39.130 | 299 | 175 | 6 | 25 | 322 | 20 | 312 | 1.52e-68 | 216 |
| Msa0046240 | MtrunA17_Chr2g0316481 | 39.458 | 332 | 159 | 8 | 25 | 317 | 74 | 402 | 8.99e-66 | 212 |
| Msa0046240 | MtrunA17_Chr1g0197411 | 38.199 | 322 | 187 | 6 | 10 | 321 | 11 | 330 | 9.78e-65 | 207 |
| Msa0046240 | MtrunA17_Chr2g0316191 | 38.855 | 332 | 162 | 8 | 25 | 317 | 74 | 403 | 2.31e-64 | 209 |
| Msa0046240 | MtrunA17_Chr2g0316831 | 37.462 | 331 | 167 | 6 | 25 | 317 | 110 | 438 | 7.22e-64 | 208 |
| Msa0046240 | MtrunA17_Chr2g0279061 | 43.893 | 262 | 129 | 6 | 71 | 321 | 12 | 266 | 1.25e-63 | 202 |
| Msa0046240 | MtrunA17_Chr3g0114461 | 53.226 | 186 | 84 | 2 | 137 | 321 | 9 | 192 | 2.00e-63 | 199 |
| Msa0046240 | MtrunA17_Chr2g0316791 | 38.671 | 331 | 163 | 8 | 25 | 317 | 74 | 402 | 5.00e-63 | 205 |
| Msa0046240 | MtrunA17_Chr6g0451571 | 39.938 | 323 | 179 | 9 | 9 | 321 | 17 | 334 | 1.12e-62 | 202 |
| Msa0046240 | MtrunA17_Chr6g0467251 | 35.736 | 333 | 197 | 6 | 3 | 325 | 4 | 329 | 2.94e-62 | 201 |
| Msa0046240 | MtrunA17_Chr7g0225221 | 36.615 | 325 | 195 | 7 | 3 | 321 | 1 | 320 | 4.75e-62 | 200 |
| Msa0046240 | MtrunA17_Chr4g0053871 | 39.571 | 326 | 182 | 8 | 1 | 317 | 1 | 320 | 1.04e-60 | 197 |
| Msa0046240 | MtrunA17_Chr4g0076211 | 39.073 | 302 | 166 | 7 | 28 | 321 | 42 | 333 | 4.70e-60 | 195 |
| Msa0046240 | MtrunA17_Chr8g0364291 | 36.728 | 324 | 193 | 6 | 7 | 321 | 4 | 324 | 4.94e-60 | 195 |
| Msa0046240 | MtrunA17_Chr6g0467161 | 39.057 | 297 | 174 | 6 | 27 | 321 | 45 | 336 | 6.12e-60 | 195 |
| Msa0046240 | MtrunA17_Chr2g0311251 | 38.757 | 338 | 158 | 11 | 25 | 320 | 9 | 339 | 9.21e-60 | 195 |
| Msa0046240 | MtrunA17_Chr5g0413051 | 37.419 | 310 | 178 | 7 | 25 | 321 | 71 | 377 | 2.81e-59 | 194 |
| Msa0046240 | MtrunA17_Chr1g0181511 | 34.539 | 304 | 189 | 6 | 25 | 322 | 25 | 324 | 6.39e-59 | 192 |
| Msa0046240 | MtrunA17_Chr2g0311241 | 35.657 | 373 | 156 | 11 | 25 | 317 | 58 | 426 | 7.09e-59 | 195 |
| Msa0046240 | MtrunA17_Chr5g0401431 | 37.538 | 325 | 181 | 9 | 11 | 320 | 11 | 328 | 6.81e-58 | 189 |
| Msa0046240 | MtrunA17_Chr1g0181431 | 34.437 | 302 | 192 | 5 | 25 | 322 | 25 | 324 | 2.13e-57 | 188 |
| Msa0046240 | MtrunA17_Chr2g0278671 | 36.570 | 309 | 181 | 6 | 23 | 321 | 20 | 323 | 3.75e-57 | 187 |
| Msa0046240 | MtrunA17_Chr1g0148021 | 37.764 | 331 | 185 | 10 | 3 | 321 | 7 | 328 | 7.83e-57 | 187 |
| Msa0046240 | MtrunA17_Chr4g0046131 | 36.280 | 328 | 187 | 9 | 9 | 317 | 18 | 342 | 1.11e-56 | 187 |
| Msa0046240 | MtrunA17_Chr4g0075241 | 34.211 | 304 | 188 | 5 | 26 | 321 | 28 | 327 | 1.15e-54 | 181 |
| Msa0046240 | MtrunA17_Chr2g0329641 | 34.641 | 306 | 185 | 6 | 26 | 321 | 35 | 335 | 1.23e-53 | 179 |
| Msa0046240 | MtrunA17_Chr6g0467121 | 34.627 | 335 | 195 | 9 | 4 | 322 | 38 | 364 | 1.64e-53 | 180 |
| Msa0046240 | MtrunA17_Chr1g0181481 | 34.323 | 303 | 191 | 6 | 25 | 322 | 25 | 324 | 3.63e-53 | 177 |
| Msa0046240 | MtrunA17_Chr3g0136751 | 35.152 | 330 | 195 | 7 | 3 | 321 | 1 | 322 | 4.21e-52 | 174 |
| Msa0046240 | MtrunA17_Chr4g0072091 | 36.842 | 304 | 173 | 8 | 26 | 317 | 23 | 319 | 1.04e-51 | 173 |
| Msa0046240 | MtrunA17_Chr4g0074851 | 34.835 | 333 | 198 | 9 | 3 | 321 | 1 | 328 | 3.46e-51 | 172 |
| Msa0046240 | MtrunA17_Chr3g0114491 | 60.714 | 112 | 44 | 0 | 26 | 137 | 17 | 128 | 1.64e-44 | 149 |
| Msa0046240 | MtrunA17_Chr2g0316811 | 35.889 | 287 | 128 | 8 | 25 | 257 | 48 | 332 | 4.23e-44 | 154 |
| Msa0046240 | MtrunA17_Chr2g0292281 | 40.930 | 215 | 106 | 5 | 119 | 324 | 17 | 219 | 3.81e-39 | 138 |
| Msa0046240 | MtrunA17_Chr2g0316141 | 37.218 | 266 | 144 | 10 | 73 | 317 | 11 | 274 | 2.92e-37 | 134 |
| Msa0046240 | MtrunA17_Chr2g0316181 | 37.218 | 266 | 144 | 10 | 73 | 317 | 11 | 274 | 2.92e-37 | 134 |
| Msa0046240 | MtrunA17_Chr4g0004591 | 30.284 | 317 | 154 | 6 | 27 | 317 | 77 | 352 | 3.16e-37 | 136 |
| Msa0046240 | MtrunA17_Chr5g0432321 | 50.420 | 119 | 55 | 2 | 148 | 265 | 17 | 132 | 6.33e-33 | 119 |
| Msa0046240 | MtrunA17_Chr1g0181491 | 38.462 | 117 | 70 | 2 | 19 | 135 | 4 | 118 | 2.72e-22 | 91.3 |
| Msa0046240 | MtrunA17_Chr3g0104101 | 36.111 | 144 | 79 | 6 | 190 | 322 | 9 | 150 | 3.62e-22 | 90.9 |
| Msa0046240 | MtrunA17_Chr6g0468731 | 60.870 | 69 | 23 | 2 | 66 | 134 | 22 | 86 | 2.86e-21 | 86.7 |
| Msa0046240 | MtrunA17_Chr2g0316771 | 32.065 | 184 | 86 | 6 | 176 | 322 | 7 | 188 | 9.14e-20 | 85.5 |
| Msa0046240 | MtrunA17_Chr1g0181501 | 30.052 | 193 | 125 | 6 | 136 | 322 | 2 | 190 | 2.69e-19 | 84.3 |
| Msa0046240 | MtrunA17_Chr7g0254181 | 45.745 | 94 | 49 | 2 | 99 | 192 | 31 | 122 | 2.40e-17 | 78.2 |
| Msa0046240 | MtrunA17_Chr1g0196191 | 52.055 | 73 | 34 | 1 | 65 | 137 | 23 | 94 | 2.76e-17 | 77.8 |
| Msa0046240 | MtrunA17_Chr5g0432361 | 40.217 | 92 | 51 | 2 | 230 | 320 | 20 | 108 | 9.14e-17 | 75.1 |
| Msa0046240 | MtrunA17_Chr3g0137751 | 34.507 | 142 | 80 | 4 | 59 | 196 | 106 | 238 | 3.21e-13 | 69.3 |
| Msa0046240 | MtrunA17_Chr4g0013811 | 39.744 | 78 | 46 | 1 | 134 | 210 | 2 | 79 | 2.19e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046240 | AT5G05340.1 | 56.000 | 300 | 126 | 4 | 25 | 321 | 28 | 324 | 1.08e-114 | 335 |
| Msa0046240 | AT5G58400.1 | 51.242 | 322 | 150 | 4 | 4 | 321 | 7 | 325 | 1.43e-108 | 320 |
| Msa0046240 | AT1G14550.1 | 48.418 | 316 | 157 | 4 | 10 | 321 | 8 | 321 | 1.11e-102 | 304 |
| Msa0046240 | AT5G58390.1 | 50.160 | 313 | 153 | 2 | 11 | 321 | 5 | 316 | 1.29e-100 | 299 |
| Msa0046240 | AT5G06730.1 | 45.994 | 337 | 169 | 6 | 4 | 329 | 8 | 342 | 8.78e-97 | 291 |
| Msa0046240 | AT4G36430.1 | 44.268 | 314 | 165 | 3 | 17 | 322 | 20 | 331 | 6.84e-96 | 287 |
| Msa0046240 | AT5G06720.1 | 46.061 | 330 | 165 | 6 | 3 | 321 | 6 | 333 | 2.36e-95 | 286 |
| Msa0046240 | AT1G14540.1 | 46.057 | 317 | 163 | 4 | 7 | 321 | 5 | 315 | 4.37e-95 | 285 |
| Msa0046240 | AT2G18150.1 | 46.488 | 299 | 150 | 3 | 31 | 321 | 40 | 336 | 6.05e-95 | 285 |
| Msa0046240 | AT2G18140.1 | 44.144 | 333 | 165 | 5 | 8 | 321 | 5 | 335 | 7.96e-93 | 280 |
| Msa0046240 | AT1G44970.1 | 47.436 | 312 | 153 | 4 | 19 | 321 | 37 | 346 | 3.38e-92 | 278 |
| Msa0046240 | AT5G19890.1 | 45.538 | 325 | 159 | 6 | 8 | 321 | 10 | 327 | 1.31e-91 | 276 |
| Msa0046240 | AT4G08770.1 | 46.326 | 313 | 155 | 5 | 23 | 324 | 20 | 330 | 2.46e-89 | 271 |
| Msa0046240 | AT5G66390.1 | 44.728 | 313 | 163 | 3 | 17 | 321 | 23 | 333 | 1.70e-88 | 269 |
| Msa0046240 | AT2G38380.1 | 45.794 | 321 | 160 | 6 | 13 | 321 | 15 | 333 | 2.69e-88 | 269 |
| Msa0046240 | AT3G50990.1 | 43.976 | 332 | 173 | 5 | 1 | 321 | 12 | 341 | 3.59e-88 | 268 |
| Msa0046240 | AT2G38390.1 | 44.860 | 321 | 163 | 6 | 13 | 321 | 15 | 333 | 6.06e-88 | 268 |
| Msa0046240 | AT3G32980.1 | 43.452 | 336 | 175 | 7 | 2 | 324 | 4 | 337 | 3.20e-87 | 266 |
| Msa0046240 | AT4G08780.1 | 44.409 | 313 | 161 | 5 | 23 | 324 | 20 | 330 | 2.10e-85 | 261 |
| Msa0046240 | AT2G35380.1 | 45.092 | 326 | 164 | 4 | 9 | 321 | 12 | 335 | 2.93e-85 | 260 |
| Msa0046240 | AT3G49120.1 | 43.119 | 327 | 171 | 7 | 11 | 324 | 14 | 338 | 1.85e-84 | 259 |
| Msa0046240 | AT1G49570.1 | 45.016 | 311 | 157 | 6 | 20 | 319 | 41 | 348 | 3.00e-84 | 258 |
| Msa0046240 | AT3G49110.1 | 43.119 | 327 | 171 | 7 | 11 | 324 | 15 | 339 | 1.54e-83 | 257 |
| Msa0046240 | AT4G16270.1 | 46.205 | 303 | 151 | 4 | 27 | 321 | 50 | 348 | 9.58e-82 | 252 |
| Msa0046240 | AT1G68850.1 | 41.558 | 308 | 165 | 6 | 27 | 321 | 30 | 335 | 1.05e-80 | 249 |
| Msa0046240 | AT2G22420.1 | 41.693 | 319 | 172 | 6 | 11 | 321 | 7 | 319 | 1.40e-80 | 248 |
| Msa0046240 | AT5G19880.1 | 42.433 | 337 | 170 | 8 | 1 | 321 | 1 | 329 | 8.38e-79 | 244 |
| Msa0046240 | AT4G33420.1 | 40.575 | 313 | 177 | 6 | 11 | 321 | 20 | 325 | 2.79e-77 | 239 |
| Msa0046240 | AT4G33420.2 | 40.575 | 313 | 177 | 6 | 11 | 321 | 67 | 372 | 1.28e-76 | 239 |
| Msa0046240 | AT3G03670.1 | 41.433 | 321 | 174 | 6 | 10 | 321 | 6 | 321 | 1.10e-75 | 235 |
| Msa0046240 | AT3G01190.1 | 42.415 | 323 | 159 | 8 | 13 | 321 | 12 | 321 | 1.00e-74 | 233 |
| Msa0046240 | AT5G15180.1 | 39.222 | 334 | 175 | 7 | 5 | 321 | 7 | 329 | 1.17e-74 | 233 |
| Msa0046240 | AT5G51890.1 | 39.339 | 333 | 179 | 10 | 1 | 321 | 1 | 322 | 2.01e-72 | 227 |
| Msa0046240 | AT2G41480.1 | 38.650 | 326 | 180 | 8 | 9 | 321 | 10 | 328 | 1.45e-71 | 225 |
| Msa0046240 | AT4G11290.1 | 40.373 | 322 | 177 | 8 | 12 | 321 | 8 | 326 | 3.30e-71 | 224 |
| Msa0046240 | AT1G05260.1 | 38.973 | 331 | 184 | 7 | 1 | 322 | 5 | 326 | 5.37e-71 | 224 |
| Msa0046240 | AT5G42180.1 | 38.679 | 318 | 178 | 7 | 11 | 320 | 8 | 316 | 5.20e-70 | 221 |
| Msa0046240 | AT5G64120.1 | 41.414 | 297 | 161 | 5 | 31 | 321 | 39 | 328 | 5.80e-70 | 221 |
| Msa0046240 | AT5G40150.1 | 40.864 | 301 | 172 | 5 | 25 | 321 | 30 | 328 | 1.24e-68 | 218 |
| Msa0046240 | AT3G28200.1 | 41.333 | 300 | 171 | 5 | 25 | 321 | 19 | 316 | 1.47e-68 | 217 |
| Msa0046240 | AT1G05240.1 | 38.907 | 311 | 163 | 8 | 27 | 321 | 26 | 325 | 2.97e-68 | 216 |
| Msa0046240 | AT1G05250.1 | 38.907 | 311 | 163 | 8 | 27 | 321 | 26 | 325 | 2.97e-68 | 216 |
| Msa0046240 | AT3G21770.1 | 39.550 | 311 | 173 | 7 | 18 | 317 | 18 | 324 | 6.94e-68 | 216 |
| Msa0046240 | AT4G26010.1 | 37.188 | 320 | 189 | 8 | 3 | 321 | 1 | 309 | 2.87e-67 | 213 |
| Msa0046240 | AT4G26010.2 | 37.188 | 320 | 189 | 8 | 3 | 321 | 29 | 337 | 6.81e-67 | 213 |
| Msa0046240 | AT1G71695.1 | 41.830 | 306 | 163 | 8 | 27 | 324 | 44 | 342 | 2.92e-66 | 213 |
| Msa0046240 | AT5G17820.1 | 38.871 | 319 | 176 | 7 | 10 | 321 | 7 | 313 | 3.86e-66 | 211 |
| Msa0046240 | AT5G17820.2 | 38.871 | 319 | 176 | 7 | 10 | 321 | 60 | 366 | 3.02e-65 | 210 |
| Msa0046240 | AT4G33870.1 | 35.072 | 345 | 155 | 6 | 27 | 317 | 68 | 397 | 6.55e-65 | 210 |
| Msa0046240 | AT5G39580.1 | 38.580 | 324 | 183 | 8 | 6 | 321 | 4 | 319 | 1.09e-63 | 204 |
| Msa0046240 | AT1G77100.1 | 39.498 | 319 | 181 | 9 | 9 | 321 | 7 | 319 | 2.91e-63 | 203 |
| Msa0046240 | AT2G39040.1 | 40.968 | 310 | 167 | 8 | 25 | 321 | 44 | 350 | 1.01e-62 | 203 |
| Msa0046240 | AT5G14130.1 | 37.578 | 322 | 186 | 7 | 9 | 321 | 15 | 330 | 1.01e-62 | 202 |
| Msa0046240 | AT5G14130.2 | 37.578 | 322 | 186 | 7 | 9 | 321 | 56 | 371 | 2.58e-62 | 202 |
| Msa0046240 | AT4G25980.1 | 36.228 | 334 | 192 | 9 | 1 | 321 | 1 | 326 | 6.33e-62 | 200 |
| Msa0046240 | AT2G35380.2 | 46.341 | 246 | 117 | 4 | 89 | 321 | 4 | 247 | 9.40e-62 | 197 |
| Msa0046240 | AT1G34510.1 | 37.742 | 310 | 184 | 7 | 13 | 321 | 8 | 309 | 4.57e-61 | 197 |
| Msa0046240 | AT1G30870.1 | 37.255 | 306 | 172 | 6 | 27 | 322 | 51 | 346 | 6.64e-61 | 198 |
| Msa0046240 | AT5G64100.1 | 38.284 | 303 | 167 | 7 | 29 | 321 | 39 | 331 | 4.74e-60 | 196 |
| Msa0046240 | AT1G24110.1 | 37.771 | 323 | 183 | 8 | 9 | 321 | 8 | 322 | 2.40e-59 | 194 |
| Msa0046240 | AT5G64110.1 | 38.226 | 327 | 176 | 8 | 9 | 321 | 16 | 330 | 3.58e-59 | 193 |
| Msa0046240 | AT2G18980.1 | 38.462 | 325 | 180 | 9 | 9 | 321 | 7 | 323 | 6.53e-59 | 192 |
| Msa0046240 | AT5G67400.1 | 36.503 | 326 | 186 | 8 | 9 | 317 | 4 | 325 | 4.33e-57 | 188 |
| Msa0046240 | AT2G24800.1 | 37.864 | 309 | 172 | 7 | 25 | 321 | 29 | 329 | 4.28e-56 | 185 |
| Msa0046240 | AT2G34060.1 | 37.209 | 344 | 182 | 12 | 1 | 317 | 6 | 342 | 8.31e-56 | 185 |
| Msa0046240 | AT3G49960.1 | 38.889 | 324 | 170 | 12 | 12 | 317 | 12 | 325 | 8.48e-56 | 184 |
| Msa0046240 | AT4G31760.1 | 37.461 | 323 | 179 | 9 | 11 | 321 | 15 | 326 | 8.90e-56 | 184 |
| Msa0046240 | AT4G30170.1 | 37.299 | 311 | 175 | 8 | 23 | 321 | 23 | 325 | 2.78e-55 | 183 |
| Msa0046240 | AT4G37530.1 | 36.334 | 311 | 174 | 9 | 23 | 317 | 23 | 325 | 3.00e-55 | 183 |
| Msa0046240 | AT5G47000.1 | 36.697 | 327 | 192 | 9 | 7 | 321 | 8 | 331 | 1.34e-54 | 181 |
| Msa0046240 | AT4G37520.1 | 37.742 | 310 | 167 | 10 | 25 | 317 | 25 | 325 | 2.05e-54 | 181 |
| Msa0046240 | AT2G37130.1 | 35.738 | 305 | 185 | 7 | 24 | 321 | 27 | 327 | 4.58e-54 | 180 |
| Msa0046240 | AT2G43480.1 | 35.065 | 308 | 182 | 7 | 26 | 321 | 34 | 335 | 1.14e-53 | 179 |
| Msa0046240 | AT2G37130.2 | 35.786 | 299 | 181 | 7 | 30 | 321 | 2 | 296 | 4.18e-53 | 176 |
| Msa0046240 | AT4G37520.2 | 38.065 | 310 | 163 | 12 | 25 | 317 | 25 | 322 | 1.06e-52 | 176 |
| Msa0046240 | AT3G17070.1 | 36.152 | 343 | 187 | 11 | 1 | 321 | 7 | 339 | 1.62e-52 | 176 |
| Msa0046240 | AT5G24070.1 | 35.238 | 315 | 186 | 8 | 20 | 322 | 28 | 336 | 2.52e-52 | 176 |
| Msa0046240 | AT4G21960.1 | 33.742 | 326 | 198 | 7 | 10 | 321 | 6 | 327 | 7.47e-52 | 174 |
| Msa0046240 | AT4G17690.1 | 37.000 | 300 | 178 | 8 | 27 | 319 | 26 | 321 | 7.42e-51 | 172 |
| Msa0046240 | AT4G37530.2 | 38.403 | 263 | 139 | 8 | 23 | 269 | 23 | 278 | 9.30e-51 | 170 |
| Msa0046240 | AT5G22410.1 | 32.500 | 320 | 199 | 8 | 9 | 318 | 10 | 322 | 8.10e-49 | 166 |
| Msa0046240 | AT4G25980.2 | 40.415 | 193 | 111 | 3 | 1 | 193 | 46 | 234 | 3.56e-42 | 148 |
| Msa0046240 | AT5G39580.2 | 40.191 | 209 | 115 | 5 | 6 | 213 | 4 | 203 | 3.59e-40 | 141 |
| Msa0046240 | AT2G24800.2 | 40.933 | 193 | 101 | 5 | 25 | 214 | 29 | 211 | 2.41e-36 | 131 |
| Msa0046240 | AT3G17070.2 | 34.815 | 270 | 148 | 9 | 69 | 321 | 18 | 276 | 1.03e-35 | 130 |
| Msa0046240 | AT3G42570.1 | 35.374 | 147 | 81 | 4 | 50 | 193 | 14 | 149 | 3.46e-16 | 75.1 |
| Msa0046240 | AT4G32320.1 | 26.821 | 302 | 141 | 12 | 14 | 300 | 83 | 319 | 1.03e-12 | 68.6 |
Find 57 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCTTTAAGTTCTGTTAA+AGG | 0.213559 | 1_1:-78269237 | Msa0046240:CDS |
| CTAATTGTACGAACAGCTTT+TGG | 0.248258 | 1_1:+78269129 | None:intergenic |
| GAAGAAATGGTTACTTTATC+AGG | 0.253613 | 1_1:-78268369 | Msa0046240:intron |
| CACTCTGATCAACAACTATT+TGG | 0.263540 | 1_1:-78267484 | Msa0046240:CDS |
| TTCGGCTGTGAAACCTTTCT+TGG | 0.264682 | 1_1:+78268389 | None:intergenic |
| AAGGCCATCAAGATTCAAAA+AGG | 0.295453 | 1_1:+78268425 | None:intergenic |
| TACAATTAGGAAAGCAGTTC+AGG | 0.312689 | 1_1:-78269115 | Msa0046240:CDS |
| TCTTGGCGAAAGCAGTAATA+AGG | 0.313799 | 1_1:+78268406 | None:intergenic |
| CAAAAGCTGTTCGTACAATT+AGG | 0.330721 | 1_1:-78269128 | Msa0046240:CDS |
| CCTCTCAGCGAATTTGCGTT+TGG | 0.333568 | 1_1:+78268748 | None:intergenic |
| CTCTCAGCGAATTTGCGTTT+GGG | 0.337491 | 1_1:+78268749 | None:intergenic |
| GAGTTATCAGCTAATTTCTA+TGG | 0.342682 | 1_1:-78269162 | Msa0046240:CDS |
| CTATTAATTACATGTATGAT+TGG | 0.345529 | 1_1:-78269201 | Msa0046240:CDS |
| TGATCAGGTGCTCACACAAT+AGG | 0.350317 | 1_1:-78267706 | Msa0046240:intron |
| TCTTCTTACTTGAGCGTTTG+TGG | 0.357638 | 1_1:+78267450 | None:intergenic |
| CCAAAACTTGTTGAAAAGTA+AGG | 0.368077 | 1_1:-78267515 | Msa0046240:CDS |
| CAAAGATGGAATGTACTATT+AGG | 0.369687 | 1_1:-78268501 | Msa0046240:CDS |
| TAAGCAGTGGTAGTGTTTGA+TGG | 0.370648 | 1_1:+78267304 | None:intergenic |
| TCAATGCTTAGTCCACTTAC+TGG | 0.377441 | 1_1:-78267370 | Msa0046240:CDS |
| TGATAAAGTAACCATTTCTT+CGG | 0.412644 | 1_1:+78268371 | None:intergenic |
| ACATCTTAGCCCTTGCTGCT+AGG | 0.420580 | 1_1:-78268657 | Msa0046240:CDS |
| AGATGACATCAAATCTCAAT+TGG | 0.429687 | 1_1:-78268713 | Msa0046240:CDS |
| AGGTTTCACAGCCGAAGAAA+TGG | 0.443774 | 1_1:-78268382 | Msa0046240:CDS |
| ATTACTGCTTTCGCCAAGAA+AGG | 0.453887 | 1_1:-78268402 | Msa0046240:CDS |
| AGTCCACTTACTGGCATTGA+AGG | 0.460678 | 1_1:-78267361 | Msa0046240:CDS |
| TCACCTTCAATGCCAGTAAG+TGG | 0.469881 | 1_1:+78267358 | None:intergenic |
| CATCTTAGCCCTTGCTGCTA+GGG | 0.473688 | 1_1:-78268656 | Msa0046240:CDS |
| TCAGAACAAGAGACAGTATT+GGG | 0.477115 | 1_1:+78268679 | None:intergenic |
| GAACAAAGCAGTCATGGAAA+TGG | 0.478577 | 1_1:+78269046 | None:intergenic |
| CTGGCATTGAAGGTGAAATC+AGG | 0.481698 | 1_1:-78267351 | Msa0046240:CDS |
| GATCAACAACTATTTGGTAA+TGG | 0.497432 | 1_1:-78267478 | Msa0046240:CDS |
| AGAAGATATAGCAGAAGCAT+GGG | 0.506186 | 1_1:-78267433 | Msa0046240:CDS |
| TTGATGGAGCATTGACGAAA+TGG | 0.506430 | 1_1:+78267320 | None:intergenic |
| TATTAATTACATGTATGATT+GGG | 0.510374 | 1_1:-78269200 | Msa0046240:CDS |
| TTACTTGAACAAAGCAGTCA+TGG | 0.513127 | 1_1:+78269040 | None:intergenic |
| AAGAAGATATAGCAGAAGCA+TGG | 0.514686 | 1_1:-78267434 | Msa0046240:CDS |
| TATAGCTTGGTGGACAAAGA+TGG | 0.515315 | 1_1:-78268515 | Msa0046240:intron |
| GATCAGGTGCTCACACAATA+GGG | 0.525526 | 1_1:-78267705 | Msa0046240:intron |
| GACGACACATCAAATTTCAC+AGG | 0.527948 | 1_1:-78268787 | Msa0046240:CDS |
| CGTGGTGTCGAGGAGTCAAA+AGG | 0.540660 | 1_1:+78267565 | None:intergenic |
| CAAAACTTGTTGAAAAGTAA+GGG | 0.557870 | 1_1:-78267514 | Msa0046240:CDS |
| GTCAGAACAAGAGACAGTAT+TGG | 0.568320 | 1_1:+78268678 | None:intergenic |
| TTAGCCCTTGCTGCTAGGGA+CGG | 0.572382 | 1_1:-78268652 | Msa0046240:CDS |
| CAACACCGTCCCTAGCAGCA+AGG | 0.580793 | 1_1:+78268647 | None:intergenic |
| ATGATGTATATATAGCTTGG+TGG | 0.584991 | 1_1:-78268525 | Msa0046240:intron |
| AACACCGTCCCTAGCAGCAA+GGG | 0.585075 | 1_1:+78268648 | None:intergenic |
| ATCATGAGGACGTGGTGTCG+AGG | 0.586699 | 1_1:+78267555 | None:intergenic |
| TGACATCAAATCTCAATTGG+AGG | 0.589015 | 1_1:-78268710 | Msa0046240:CDS |
| GATTAATTTAATTTAAGCAG+TGG | 0.594474 | 1_1:+78267291 | None:intergenic |
| CCAAACGCAAATTCGCTGAG+AGG | 0.600916 | 1_1:-78268748 | Msa0046240:CDS |
| TGCTAGGGACGGTGTTGCTG+AGG | 0.615933 | 1_1:-78268641 | Msa0046240:intron |
| TGTTAAGAATGAGAGTCGCA+TGG | 0.618020 | 1_1:-78269088 | Msa0046240:CDS |
| CTCACACAATAGGGCTAGTG+AGG | 0.619880 | 1_1:-78267696 | Msa0046240:CDS |
| ATGGAAATGGAGTCTAAGCA+AGG | 0.625587 | 1_1:+78269059 | None:intergenic |
| GTTAAGAATGAGAGTCGCAT+GGG | 0.627549 | 1_1:-78269087 | Msa0046240:CDS |
| TTATCAAAATCATGAGGACG+TGG | 0.652723 | 1_1:+78267547 | None:intergenic |
| TAACCATTATCAAAATCATG+AGG | 0.665603 | 1_1:+78267541 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATTACATGTATGATT+GGG | - | chr1_1:78267340-78267359 | Msa0046240:CDS | 15.0% |
| !! | CATCAAATTACATTAATTAT+CGG | - | chr1_1:78268216-78268235 | Msa0046240:intron | 15.0% |
| !!! | ATATACTATTAATGACATTT+TGG | + | chr1_1:78268794-78268813 | None:intergenic | 15.0% |
| !!! | AATAGTATATAACATTTTGA+TGG | - | chr1_1:78268804-78268823 | Msa0046240:CDS | 15.0% |
| !! | TATTAATTACATGTATGATT+GGG | - | chr1_1:78267340-78267359 | Msa0046240:CDS | 15.0% |
| !! | CATCAAATTACATTAATTAT+CGG | - | chr1_1:78268216-78268235 | Msa0046240:intron | 15.0% |
| !!! | ATATACTATTAATGACATTT+TGG | + | chr1_1:78268794-78268813 | None:intergenic | 15.0% |
| !!! | AATAGTATATAACATTTTGA+TGG | - | chr1_1:78268804-78268823 | Msa0046240:CDS | 15.0% |
| !! | CTATTAATTACATGTATGAT+TGG | - | chr1_1:78267339-78267358 | Msa0046240:CDS | 20.0% |
| !! | TAAATGATGTATATATAGCT+TGG | - | chr1_1:78268012-78268031 | Msa0046240:intron | 20.0% |
| !! | CGATAATTAATGTAATTTGA+TGG | + | chr1_1:78268218-78268237 | None:intergenic | 20.0% |
| !! | TATCAATTAATATTGAACGA+AGG | - | chr1_1:78268464-78268483 | Msa0046240:CDS | 20.0% |
| !! | ATCAATTAATATTGAACGAA+GGG | - | chr1_1:78268465-78268484 | Msa0046240:CDS | 20.0% |
| !! | GTTGTTTGATTAAGATAAAA+TGG | + | chr1_1:78268612-78268631 | None:intergenic | 20.0% |
| !! | CTATTAATTACATGTATGAT+TGG | - | chr1_1:78267339-78267358 | Msa0046240:CDS | 20.0% |
| !! | TAAATGATGTATATATAGCT+TGG | - | chr1_1:78268012-78268031 | Msa0046240:intron | 20.0% |
| !! | CGATAATTAATGTAATTTGA+TGG | + | chr1_1:78268218-78268237 | None:intergenic | 20.0% |
| !! | TATCAATTAATATTGAACGA+AGG | - | chr1_1:78268464-78268483 | Msa0046240:CDS | 20.0% |
| !! | ATCAATTAATATTGAACGAA+GGG | - | chr1_1:78268465-78268484 | Msa0046240:CDS | 20.0% |
| !! | GTTGTTTGATTAAGATAAAA+TGG | + | chr1_1:78268612-78268631 | None:intergenic | 20.0% |
| ! | TGATAAAGTAACCATTTCTT+CGG | + | chr1_1:78268172-78268191 | None:intergenic | 25.0% |
| ! | TAATTTGATGGAGTAATCAA+GGG | + | chr1_1:78268206-78268225 | None:intergenic | 25.0% |
| ! | TCAATTAATATTGAACGAAG+GGG | - | chr1_1:78268466-78268485 | Msa0046240:CDS | 25.0% |
| ! | TAACCATTATCAAAATCATG+AGG | + | chr1_1:78269002-78269021 | None:intergenic | 25.0% |
| !!! | CAAAACTTGTTGAAAAGTAA+GGG | - | chr1_1:78269026-78269045 | Msa0046240:intron | 25.0% |
| ! | TGATAAAGTAACCATTTCTT+CGG | + | chr1_1:78268172-78268191 | None:intergenic | 25.0% |
| ! | TAATTTGATGGAGTAATCAA+GGG | + | chr1_1:78268206-78268225 | None:intergenic | 25.0% |
| ! | TCAATTAATATTGAACGAAG+GGG | - | chr1_1:78268466-78268485 | Msa0046240:CDS | 25.0% |
| ! | TAACCATTATCAAAATCATG+AGG | + | chr1_1:78269002-78269021 | None:intergenic | 25.0% |
| !!! | CAAAACTTGTTGAAAAGTAA+GGG | - | chr1_1:78269026-78269045 | Msa0046240:intron | 25.0% |
| !! | ATGGCTTTAAGTTCTGTTAA+AGG | - | chr1_1:78267303-78267322 | Msa0046240:CDS | 30.0% |
| GAGTTATCAGCTAATTTCTA+TGG | - | chr1_1:78267378-78267397 | Msa0046240:CDS | 30.0% | |
| TGTACAATATACATACATGC+AGG | - | chr1_1:78267707-78267726 | Msa0046240:intron | 30.0% | |
| GTACAATATACATACATGCA+GGG | - | chr1_1:78267708-78267727 | Msa0046240:intron | 30.0% | |
| AGATGACATCAAATCTCAAT+TGG | - | chr1_1:78267827-78267846 | Msa0046240:intron | 30.0% | |
| ATGATGTATATATAGCTTGG+TGG | - | chr1_1:78268015-78268034 | Msa0046240:intron | 30.0% | |
| CAAAGATGGAATGTACTATT+AGG | - | chr1_1:78268039-78268058 | Msa0046240:intron | 30.0% | |
| ! | GAAGAAATGGTTACTTTATC+AGG | - | chr1_1:78268171-78268190 | Msa0046240:intron | 30.0% |
| GTAATTTGATGGAGTAATCA+AGG | + | chr1_1:78268207-78268226 | None:intergenic | 30.0% | |
| AGGTGTCAATTAATATGAGA+AGG | + | chr1_1:78268264-78268283 | None:intergenic | 30.0% | |
| TGAATAATGCATGTAGTCAA+AGG | + | chr1_1:78268284-78268303 | None:intergenic | 30.0% | |
| GCATTATTTCAATAAGACAG+TGG | - | chr1_1:78268504-78268523 | Msa0046240:CDS | 30.0% | |
| GCATGAAGTTATATGCATTT+AGG | + | chr1_1:78268648-78268667 | None:intergenic | 30.0% | |
| TAAATGTGATCACATGTACA+TGG | - | chr1_1:78268755-78268774 | Msa0046240:CDS | 30.0% | |
| AAATGTGATCACATGTACAT+GGG | - | chr1_1:78268756-78268775 | Msa0046240:CDS | 30.0% | |
| !!! | TTTGATGGTTTTGTTTGATC+AGG | - | chr1_1:78268819-78268838 | Msa0046240:intron | 30.0% |
| !! | CCTTACTTTTCAACAAGTTT+TGG | + | chr1_1:78269028-78269047 | None:intergenic | 30.0% |
| !! | CCAAAACTTGTTGAAAAGTA+AGG | - | chr1_1:78269025-78269044 | Msa0046240:intron | 30.0% |
| GATCAACAACTATTTGGTAA+TGG | - | chr1_1:78269062-78269081 | Msa0046240:CDS | 30.0% | |
| !! | ATGGCTTTAAGTTCTGTTAA+AGG | - | chr1_1:78267303-78267322 | Msa0046240:CDS | 30.0% |
| GAGTTATCAGCTAATTTCTA+TGG | - | chr1_1:78267378-78267397 | Msa0046240:CDS | 30.0% | |
| TGTACAATATACATACATGC+AGG | - | chr1_1:78267707-78267726 | Msa0046240:intron | 30.0% | |
| GTACAATATACATACATGCA+GGG | - | chr1_1:78267708-78267727 | Msa0046240:intron | 30.0% | |
| AGATGACATCAAATCTCAAT+TGG | - | chr1_1:78267827-78267846 | Msa0046240:intron | 30.0% | |
| ATGATGTATATATAGCTTGG+TGG | - | chr1_1:78268015-78268034 | Msa0046240:intron | 30.0% | |
| CAAAGATGGAATGTACTATT+AGG | - | chr1_1:78268039-78268058 | Msa0046240:intron | 30.0% | |
| ! | GAAGAAATGGTTACTTTATC+AGG | - | chr1_1:78268171-78268190 | Msa0046240:intron | 30.0% |
| GTAATTTGATGGAGTAATCA+AGG | + | chr1_1:78268207-78268226 | None:intergenic | 30.0% | |
| AGGTGTCAATTAATATGAGA+AGG | + | chr1_1:78268264-78268283 | None:intergenic | 30.0% | |
| TGAATAATGCATGTAGTCAA+AGG | + | chr1_1:78268284-78268303 | None:intergenic | 30.0% | |
| GCATTATTTCAATAAGACAG+TGG | - | chr1_1:78268504-78268523 | Msa0046240:CDS | 30.0% | |
| GCATGAAGTTATATGCATTT+AGG | + | chr1_1:78268648-78268667 | None:intergenic | 30.0% | |
| TAAATGTGATCACATGTACA+TGG | - | chr1_1:78268755-78268774 | Msa0046240:CDS | 30.0% | |
| AAATGTGATCACATGTACAT+GGG | - | chr1_1:78268756-78268775 | Msa0046240:CDS | 30.0% | |
| !!! | TTTGATGGTTTTGTTTGATC+AGG | - | chr1_1:78268819-78268838 | Msa0046240:intron | 30.0% |
| !! | CCTTACTTTTCAACAAGTTT+TGG | + | chr1_1:78269028-78269047 | None:intergenic | 30.0% |
| !! | CCAAAACTTGTTGAAAAGTA+AGG | - | chr1_1:78269025-78269044 | Msa0046240:intron | 30.0% |
| GATCAACAACTATTTGGTAA+TGG | - | chr1_1:78269062-78269081 | Msa0046240:CDS | 30.0% | |
| ! | CTAATTGTACGAACAGCTTT+TGG | + | chr1_1:78267414-78267433 | None:intergenic | 35.0% |
| CAAAAGCTGTTCGTACAATT+AGG | - | chr1_1:78267412-78267431 | Msa0046240:CDS | 35.0% | |
| TACAATTAGGAAAGCAGTTC+AGG | - | chr1_1:78267425-78267444 | Msa0046240:CDS | 35.0% | |
| TTACTTGAACAAAGCAGTCA+TGG | + | chr1_1:78267503-78267522 | None:intergenic | 35.0% | |
| ! | TTATCAGAGTCTTTTTCCCT+CGG | - | chr1_1:78267632-78267651 | Msa0046240:CDS | 35.0% |
| TGACATCAAATCTCAATTGG+AGG | - | chr1_1:78267830-78267849 | Msa0046240:intron | 35.0% | |
| TCAGAACAAGAGACAGTATT+GGG | + | chr1_1:78267864-78267883 | None:intergenic | 35.0% | |
| AGGCCATCAAGATTCAAAAA+GGG | + | chr1_1:78268117-78268136 | None:intergenic | 35.0% | |
| AAGGCCATCAAGATTCAAAA+AGG | + | chr1_1:78268118-78268137 | None:intergenic | 35.0% | |
| ! | GTGTTTGACTTTCATACATG+TGG | + | chr1_1:78268673-78268692 | None:intergenic | 35.0% |
| TTATCAAAATCATGAGGACG+TGG | + | chr1_1:78268996-78269015 | None:intergenic | 35.0% | |
| !! | CGTCCTCATGATTTTGATAA+TGG | - | chr1_1:78268996-78269015 | Msa0046240:intron | 35.0% |
| CACTCTGATCAACAACTATT+TGG | - | chr1_1:78269056-78269075 | Msa0046240:CDS | 35.0% | |
| AAGAAGATATAGCAGAAGCA+TGG | - | chr1_1:78269106-78269125 | Msa0046240:CDS | 35.0% | |
| ! | AGAAGATATAGCAGAAGCAT+GGG | - | chr1_1:78269107-78269126 | Msa0046240:CDS | 35.0% |
| ! | CTAATTGTACGAACAGCTTT+TGG | + | chr1_1:78267414-78267433 | None:intergenic | 35.0% |
| CAAAAGCTGTTCGTACAATT+AGG | - | chr1_1:78267412-78267431 | Msa0046240:CDS | 35.0% | |
| TACAATTAGGAAAGCAGTTC+AGG | - | chr1_1:78267425-78267444 | Msa0046240:CDS | 35.0% | |
| TTACTTGAACAAAGCAGTCA+TGG | + | chr1_1:78267503-78267522 | None:intergenic | 35.0% | |
| ! | TTATCAGAGTCTTTTTCCCT+CGG | - | chr1_1:78267632-78267651 | Msa0046240:CDS | 35.0% |
| TGACATCAAATCTCAATTGG+AGG | - | chr1_1:78267830-78267849 | Msa0046240:intron | 35.0% | |
| TCAGAACAAGAGACAGTATT+GGG | + | chr1_1:78267864-78267883 | None:intergenic | 35.0% | |
| AGGCCATCAAGATTCAAAAA+GGG | + | chr1_1:78268117-78268136 | None:intergenic | 35.0% | |
| AAGGCCATCAAGATTCAAAA+AGG | + | chr1_1:78268118-78268137 | None:intergenic | 35.0% | |
| ! | GTGTTTGACTTTCATACATG+TGG | + | chr1_1:78268673-78268692 | None:intergenic | 35.0% |
| TTATCAAAATCATGAGGACG+TGG | + | chr1_1:78268996-78269015 | None:intergenic | 35.0% | |
| !! | CGTCCTCATGATTTTGATAA+TGG | - | chr1_1:78268996-78269015 | Msa0046240:intron | 35.0% |
| CACTCTGATCAACAACTATT+TGG | - | chr1_1:78269056-78269075 | Msa0046240:CDS | 35.0% | |
| AAGAAGATATAGCAGAAGCA+TGG | - | chr1_1:78269106-78269125 | Msa0046240:CDS | 35.0% | |
| ! | AGAAGATATAGCAGAAGCAT+GGG | - | chr1_1:78269107-78269126 | Msa0046240:CDS | 35.0% |
| TGTTAAGAATGAGAGTCGCA+TGG | - | chr1_1:78267452-78267471 | Msa0046240:CDS | 40.0% | |
| GTTAAGAATGAGAGTCGCAT+GGG | - | chr1_1:78267453-78267472 | Msa0046240:CDS | 40.0% | |
| ATGGAAATGGAGTCTAAGCA+AGG | + | chr1_1:78267484-78267503 | None:intergenic | 40.0% | |
| GAACAAAGCAGTCATGGAAA+TGG | + | chr1_1:78267497-78267516 | None:intergenic | 40.0% | |
| GACGACACATCAAATTTCAC+AGG | - | chr1_1:78267753-78267772 | Msa0046240:intron | 40.0% | |
| GTCAGAACAAGAGACAGTAT+TGG | + | chr1_1:78267865-78267884 | None:intergenic | 40.0% | |
| ! | TATAGCTTGGTGGACAAAGA+TGG | - | chr1_1:78268025-78268044 | Msa0046240:intron | 40.0% |
| TCAAGATTCAAAAAGGGAGC+AGG | + | chr1_1:78268111-78268130 | None:intergenic | 40.0% | |
| ! | GCTCCCTTTTTGAATCTTGA+TGG | - | chr1_1:78268111-78268130 | Msa0046240:intron | 40.0% |
| TCTTGGCGAAAGCAGTAATA+AGG | + | chr1_1:78268137-78268156 | None:intergenic | 40.0% | |
| ATTACTGCTTTCGCCAAGAA+AGG | - | chr1_1:78268138-78268157 | Msa0046240:intron | 40.0% | |
| GCATTTAGGTGACACATCTA+TGG | + | chr1_1:78268634-78268653 | None:intergenic | 40.0% | |
| ! | TGCATTTTTGCAGCAAATGC+TGG | + | chr1_1:78268915-78268934 | None:intergenic | 40.0% |
| TCTTCTTACTTGAGCGTTTG+TGG | + | chr1_1:78269093-78269112 | None:intergenic | 40.0% | |
| TCAATGCTTAGTCCACTTAC+TGG | - | chr1_1:78269170-78269189 | Msa0046240:CDS | 40.0% | |
| !! | TTGATGGAGCATTGACGAAA+TGG | + | chr1_1:78269223-78269242 | None:intergenic | 40.0% |
| ! | TAAGCAGTGGTAGTGTTTGA+TGG | + | chr1_1:78269239-78269258 | None:intergenic | 40.0% |
| TGTTAAGAATGAGAGTCGCA+TGG | - | chr1_1:78267452-78267471 | Msa0046240:CDS | 40.0% | |
| GTTAAGAATGAGAGTCGCAT+GGG | - | chr1_1:78267453-78267472 | Msa0046240:CDS | 40.0% | |
| ATGGAAATGGAGTCTAAGCA+AGG | + | chr1_1:78267484-78267503 | None:intergenic | 40.0% | |
| GAACAAAGCAGTCATGGAAA+TGG | + | chr1_1:78267497-78267516 | None:intergenic | 40.0% | |
| GACGACACATCAAATTTCAC+AGG | - | chr1_1:78267753-78267772 | Msa0046240:intron | 40.0% | |
| GTCAGAACAAGAGACAGTAT+TGG | + | chr1_1:78267865-78267884 | None:intergenic | 40.0% | |
| ! | TATAGCTTGGTGGACAAAGA+TGG | - | chr1_1:78268025-78268044 | Msa0046240:intron | 40.0% |
| TCAAGATTCAAAAAGGGAGC+AGG | + | chr1_1:78268111-78268130 | None:intergenic | 40.0% | |
| ! | GCTCCCTTTTTGAATCTTGA+TGG | - | chr1_1:78268111-78268130 | Msa0046240:intron | 40.0% |
| TCTTGGCGAAAGCAGTAATA+AGG | + | chr1_1:78268137-78268156 | None:intergenic | 40.0% | |
| ATTACTGCTTTCGCCAAGAA+AGG | - | chr1_1:78268138-78268157 | Msa0046240:intron | 40.0% | |
| GCATTTAGGTGACACATCTA+TGG | + | chr1_1:78268634-78268653 | None:intergenic | 40.0% | |
| ! | TGCATTTTTGCAGCAAATGC+TGG | + | chr1_1:78268915-78268934 | None:intergenic | 40.0% |
| TCTTCTTACTTGAGCGTTTG+TGG | + | chr1_1:78269093-78269112 | None:intergenic | 40.0% | |
| TCAATGCTTAGTCCACTTAC+TGG | - | chr1_1:78269170-78269189 | Msa0046240:CDS | 40.0% | |
| !! | TTGATGGAGCATTGACGAAA+TGG | + | chr1_1:78269223-78269242 | None:intergenic | 40.0% |
| ! | TAAGCAGTGGTAGTGTTTGA+TGG | + | chr1_1:78269239-78269258 | None:intergenic | 40.0% |
| !! | TTTTCCCTCGGATTCGAGTT+AGG | - | chr1_1:78267644-78267663 | Msa0046240:CDS | 45.0% |
| CTCTCAGCGAATTTGCGTTT+GGG | + | chr1_1:78267794-78267813 | None:intergenic | 45.0% | |
| TTCGGCTGTGAAACCTTTCT+TGG | + | chr1_1:78268154-78268173 | None:intergenic | 45.0% | |
| AGGTTTCACAGCCGAAGAAA+TGG | - | chr1_1:78268158-78268177 | Msa0046240:intron | 45.0% | |
| CACATGTACATGGGTCGTAT+TGG | - | chr1_1:78268765-78268784 | Msa0046240:CDS | 45.0% | |
| TGATCAGGTGCTCACACAAT+AGG | - | chr1_1:78268834-78268853 | Msa0046240:intron | 45.0% | |
| GATCAGGTGCTCACACAATA+GGG | - | chr1_1:78268835-78268854 | Msa0046240:intron | 45.0% | |
| !! | GGTGCAGATTTTTCAGAGCA+AGG | - | chr1_1:78268865-78268884 | Msa0046240:intron | 45.0% |
| !! | AAGCAGAGTGCCCTTTTGAA+GGG | - | chr1_1:78268934-78268953 | Msa0046240:intron | 45.0% |
| TGTCATCACCCCCTTCAAAA+GGG | + | chr1_1:78268947-78268966 | None:intergenic | 45.0% | |
| TTGTCATCACCCCCTTCAAA+AGG | + | chr1_1:78268948-78268967 | None:intergenic | 45.0% | |
| ! | AGTCCACTTACTGGCATTGA+AGG | - | chr1_1:78269179-78269198 | Msa0046240:CDS | 45.0% |
| TCACCTTCAATGCCAGTAAG+TGG | + | chr1_1:78269185-78269204 | None:intergenic | 45.0% | |
| ! | CTGGCATTGAAGGTGAAATC+AGG | - | chr1_1:78269189-78269208 | Msa0046240:CDS | 45.0% |
| !! | TTTTCCCTCGGATTCGAGTT+AGG | - | chr1_1:78267644-78267663 | Msa0046240:CDS | 45.0% |
| CTCTCAGCGAATTTGCGTTT+GGG | + | chr1_1:78267794-78267813 | None:intergenic | 45.0% | |
| TTCGGCTGTGAAACCTTTCT+TGG | + | chr1_1:78268154-78268173 | None:intergenic | 45.0% | |
| AGGTTTCACAGCCGAAGAAA+TGG | - | chr1_1:78268158-78268177 | Msa0046240:intron | 45.0% | |
| CACATGTACATGGGTCGTAT+TGG | - | chr1_1:78268765-78268784 | Msa0046240:CDS | 45.0% | |
| TGATCAGGTGCTCACACAAT+AGG | - | chr1_1:78268834-78268853 | Msa0046240:intron | 45.0% | |
| GATCAGGTGCTCACACAATA+GGG | - | chr1_1:78268835-78268854 | Msa0046240:intron | 45.0% | |
| !! | GGTGCAGATTTTTCAGAGCA+AGG | - | chr1_1:78268865-78268884 | Msa0046240:intron | 45.0% |
| !! | AAGCAGAGTGCCCTTTTGAA+GGG | - | chr1_1:78268934-78268953 | Msa0046240:intron | 45.0% |
| TGTCATCACCCCCTTCAAAA+GGG | + | chr1_1:78268947-78268966 | None:intergenic | 45.0% | |
| TTGTCATCACCCCCTTCAAA+AGG | + | chr1_1:78268948-78268967 | None:intergenic | 45.0% | |
| ! | AGTCCACTTACTGGCATTGA+AGG | - | chr1_1:78269179-78269198 | Msa0046240:CDS | 45.0% |
| TCACCTTCAATGCCAGTAAG+TGG | + | chr1_1:78269185-78269204 | None:intergenic | 45.0% | |
| ! | CTGGCATTGAAGGTGAAATC+AGG | - | chr1_1:78269189-78269208 | Msa0046240:CDS | 45.0% |
| GTCTCCTAACTCGAATCCGA+GGG | + | chr1_1:78267651-78267670 | None:intergenic | 50.0% | |
| TGTCTCCTAACTCGAATCCG+AGG | + | chr1_1:78267652-78267671 | None:intergenic | 50.0% | |
| CCTCTCAGCGAATTTGCGTT+TGG | + | chr1_1:78267795-78267814 | None:intergenic | 50.0% | |
| CCAAACGCAAATTCGCTGAG+AGG | - | chr1_1:78267792-78267811 | Msa0046240:intron | 50.0% | |
| ACATCTTAGCCCTTGCTGCT+AGG | - | chr1_1:78267883-78267902 | Msa0046240:intron | 50.0% | |
| CATCTTAGCCCTTGCTGCTA+GGG | - | chr1_1:78267884-78267903 | Msa0046240:intron | 50.0% | |
| ACACCAAACACGACACATCG+AGG | - | chr1_1:78268689-78268708 | Msa0046240:CDS | 50.0% | |
| ATGCCTCGATGTGTCGTGTT+TGG | + | chr1_1:78268695-78268714 | None:intergenic | 50.0% | |
| ! | CTCACACAATAGGGCTAGTG+AGG | - | chr1_1:78268844-78268863 | Msa0046240:intron | 50.0% |
| !! | CAAGCAGAGTGCCCTTTTGA+AGG | - | chr1_1:78268933-78268952 | Msa0046240:intron | 50.0% |
| !! | AGCAGAGTGCCCTTTTGAAG+GGG | - | chr1_1:78268935-78268954 | Msa0046240:intron | 50.0% |
| GTCTCCTAACTCGAATCCGA+GGG | + | chr1_1:78267651-78267670 | None:intergenic | 50.0% | |
| TGTCTCCTAACTCGAATCCG+AGG | + | chr1_1:78267652-78267671 | None:intergenic | 50.0% | |
| CCTCTCAGCGAATTTGCGTT+TGG | + | chr1_1:78267795-78267814 | None:intergenic | 50.0% | |
| CCAAACGCAAATTCGCTGAG+AGG | - | chr1_1:78267792-78267811 | Msa0046240:intron | 50.0% | |
| ACATCTTAGCCCTTGCTGCT+AGG | - | chr1_1:78267883-78267902 | Msa0046240:intron | 50.0% | |
| CATCTTAGCCCTTGCTGCTA+GGG | - | chr1_1:78267884-78267903 | Msa0046240:intron | 50.0% | |
| ACACCAAACACGACACATCG+AGG | - | chr1_1:78268689-78268708 | Msa0046240:CDS | 50.0% | |
| ATGCCTCGATGTGTCGTGTT+TGG | + | chr1_1:78268695-78268714 | None:intergenic | 50.0% | |
| ! | CTCACACAATAGGGCTAGTG+AGG | - | chr1_1:78268844-78268863 | Msa0046240:intron | 50.0% |
| !! | CAAGCAGAGTGCCCTTTTGA+AGG | - | chr1_1:78268933-78268952 | Msa0046240:intron | 50.0% |
| !! | AGCAGAGTGCCCTTTTGAAG+GGG | - | chr1_1:78268935-78268954 | Msa0046240:intron | 50.0% |
| TTAGCCCTTGCTGCTAGGGA+CGG | - | chr1_1:78267888-78267907 | Msa0046240:intron | 55.0% | |
| AACACCGTCCCTAGCAGCAA+GGG | + | chr1_1:78267895-78267914 | None:intergenic | 55.0% | |
| !! | GCAGAGTGCCCTTTTGAAGG+GGG | - | chr1_1:78268936-78268955 | Msa0046240:intron | 55.0% |
| ! | CGTGGTGTCGAGGAGTCAAA+AGG | + | chr1_1:78268978-78268997 | None:intergenic | 55.0% |
| ! | ATCATGAGGACGTGGTGTCG+AGG | + | chr1_1:78268988-78269007 | None:intergenic | 55.0% |
| TTAGCCCTTGCTGCTAGGGA+CGG | - | chr1_1:78267888-78267907 | Msa0046240:intron | 55.0% | |
| AACACCGTCCCTAGCAGCAA+GGG | + | chr1_1:78267895-78267914 | None:intergenic | 55.0% | |
| !! | GCAGAGTGCCCTTTTGAAGG+GGG | - | chr1_1:78268936-78268955 | Msa0046240:intron | 55.0% |
| ! | CGTGGTGTCGAGGAGTCAAA+AGG | + | chr1_1:78268978-78268997 | None:intergenic | 55.0% |
| ! | ATCATGAGGACGTGGTGTCG+AGG | + | chr1_1:78268988-78269007 | None:intergenic | 55.0% |
| CAACACCGTCCCTAGCAGCA+AGG | + | chr1_1:78267896-78267915 | None:intergenic | 60.0% | |
| !! | TGCTAGGGACGGTGTTGCTG+AGG | - | chr1_1:78267899-78267918 | Msa0046240:intron | 60.0% |
| CAACACCGTCCCTAGCAGCA+AGG | + | chr1_1:78267896-78267915 | None:intergenic | 60.0% | |
| !! | TGCTAGGGACGGTGTTGCTG+AGG | - | chr1_1:78267899-78267918 | Msa0046240:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78267303 | 78269259 | 78267303 | ID=Msa0046240;Name=Msa0046240 |
| chr1_1 | mRNA | 78267303 | 78269259 | 78267303 | ID=Msa0046240-mRNA-1;Parent=Msa0046240;Name=Msa0046240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|329 |
| chr1_1 | exon | 78269044 | 78269259 | 78269044 | ID=Msa0046240-mRNA-1:exon:26926;Parent=Msa0046240-mRNA-1 |
| chr1_1 | exon | 78268642 | 78268833 | 78268642 | ID=Msa0046240-mRNA-1:exon:26925;Parent=Msa0046240-mRNA-1 |
| chr1_1 | exon | 78268370 | 78268532 | 78268370 | ID=Msa0046240-mRNA-1:exon:26924;Parent=Msa0046240-mRNA-1 |
| chr1_1 | exon | 78267303 | 78267721 | 78267303 | ID=Msa0046240-mRNA-1:exon:26923;Parent=Msa0046240-mRNA-1 |
| chr1_1 | CDS | 78269044 | 78269259 | 78269044 | ID=Msa0046240-mRNA-1:cds;Parent=Msa0046240-mRNA-1 |
| chr1_1 | CDS | 78268642 | 78268833 | 78268642 | ID=Msa0046240-mRNA-1:cds;Parent=Msa0046240-mRNA-1 |
| chr1_1 | CDS | 78268370 | 78268532 | 78268370 | ID=Msa0046240-mRNA-1:cds;Parent=Msa0046240-mRNA-1 |
| chr1_1 | CDS | 78267303 | 78267721 | 78267303 | ID=Msa0046240-mRNA-1:cds;Parent=Msa0046240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
