AlfalfaGEDB | Msa1393440

M. sativa cultivar zhongmu-4 / Msa1393440

KEGG: K00430
GO: GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1990748
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393440	XP_003594502.1	92.068	353	28	0	1	353	1	353	0.0	659

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393440	sp\|Q9FG34\|PER54_ARATH	58.462	325	134	1	16	340	19	342	4.36e-129	376

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393440	G7IJV0	92.068	353	28	0	1	353	1	353	0.0	659

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004580	Msa1393440	0.819867	9.267495e-53	-8.615850e-47
Msa0006700	Msa1393440	-0.813138	2.979009e-51	-8.615850e-47
Msa0008850	Msa1393440	-0.816199	6.252873e-52	-8.615850e-47
Msa0012780	Msa1393440	0.803396	3.556343e-49	-8.615850e-47
Msa0012820	Msa1393440	0.876036	1.920558e-68	-8.615850e-47
Msa0020630	Msa1393440	-0.815157	1.067249e-51	-8.615850e-47
Msa0024280	Msa1393440	0.800749	1.245271e-48	-8.615850e-47
Msa0028280	Msa1393440	-0.816848	4.476120e-52	-8.615850e-47
Msa0036230	Msa1393440	0.870569	1.321485e-66	-8.615850e-47
Msa0036580	Msa1393440	0.854690	1.040451e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393440	MtrunA17_Chr2g0292291	92.068	353	28	0	1	353	1	353	0.0	659
Msa1393440	MtrunA17_Chr2g0292261	76.353	351	81	2	4	353	3	352	0.0	531
Msa1393440	MtrunA17_Chr2g0292271	74.286	350	85	4	7	353	6	353	0.0	505
Msa1393440	MtrunA17_Chr2g0292241	69.014	355	103	4	4	353	3	355	4.34e-177	495
Msa1393440	MtrunA17_Chr2g0292181	68.182	352	109	2	4	353	12	362	1.90e-174	489
Msa1393440	MtrunA17_Chr2g0292211	67.733	344	109	2	11	353	21	363	3.06e-168	473
Msa1393440	MtrunA17_Chr2g0292251	69.760	334	95	3	23	351	21	353	4.70e-164	462
Msa1393440	MtrunA17_Chr2g0292111	63.842	354	123	2	3	352	2	354	2.45e-159	450
Msa1393440	MtrunA17_Chr2g0291751	63.739	353	123	2	4	352	3	354	2.39e-157	445
Msa1393440	MtrunA17_Chr2g0292151	63.277	354	124	3	4	353	3	354	1.10e-154	438

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393440	AT5G06730.1	58.462	325	134	1	16	340	19	342	4.43e-130	376
Msa1393440	AT5G06720.1	58.360	317	131	1	16	332	18	333	7.17e-126	365
Msa1393440	AT2G38380.1	53.623	345	151	4	9	352	12	348	3.28e-124	361
Msa1393440	AT3G32980.1	55.172	319	140	3	26	342	27	344	1.11e-117	345
Msa1393440	AT2G38390.1	51.304	345	159	4	9	352	12	348	1.13e-117	344
Msa1393440	AT3G49120.1	54.890	317	140	3	26	340	28	343	7.09e-117	343
Msa1393440	AT3G49110.1	54.890	317	140	3	26	340	29	344	5.04e-116	340
Msa1393440	AT4G08770.1	52.322	323	151	3	26	346	20	341	7.34e-116	340
Msa1393440	AT4G08780.1	51.393	323	154	3	26	346	20	341	3.10e-113	333
Msa1393440	AT5G66390.1	46.291	337	172	4	1	332	1	333	1.63e-100	300

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Find 80 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTCATTTCTTAATCA+AGG	0.380354	tig0021677:+12786	Msa1393440:CDS
AAACTATCTCTTCTTCCTAA+TGG	0.298706	tig0021677:-12699	Msa1393440:intergenic
AAAGCTATTGACAATGTCAA+TGG	0.511312	tig0021677:-13329	Msa1393440:intergenic
AAAGTGAAGCCTAATGAAAC+TGG	0.404928	tig0021677:-11236	Msa1393440:intergenic
AAGACAAGTTGCATAAGAAA+AGG	0.458040	tig0021677:+13542	Msa1393440:three_prime_UTR
AAGGCCTCCATGATTAAAAT+GGG	0.443699	tig0021677:+13385	Msa1393440:CDS
AAGTTGTGCATTTGAAGAGA+AGG	0.544272	tig0021677:-11119	Msa1393440:intergenic
AATATCCTTAATCTAATTAC+AGG	0.335691	tig0021677:-13771	Msa1393440:intergenic
AATGGTATCAGCACCAGTTG+TGG	0.543672	tig0021677:-13311	Msa1393440:intergenic
AATTCAGTAAGATTAAATCG+GGG	0.694375	tig0021677:-12762	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGATGCTAACTTCTATA+AGG	+	tig0021677:11138-11157	Msa1393440:CDS	30.0%
TCCAAAACTTAGTTAGATGT+TGG	-	tig0021677:11481-11500	Msa1393440:intergenic	30.0%
CCAAATAACAACTCAATAAG+AGG	+	tig0021677:11604-11623	Msa1393440:CDS	30.0%
TAACAACTCAATAAGAGGTT+TGG	+	tig0021677:11609-11628	Msa1393440:CDS	30.0%
TGCTAATATTTCATCTGTTC+TGG	+	tig0021677:11711-11730	Msa1393440:CDS	30.0%
ATATGAATATATAGAGGGTG+TGG	-	tig0021677:11743-11762	Msa1393440:intergenic	30.0%
TAAAGAAAGAACAATGAGCA+TGG	-	tig0021677:11958-11977	Msa1393440:intergenic	30.0%
CTCTCAAGATAAAGTCTAAT+AGG	+	tig0021677:12477-12496	Msa1393440:intron	30.0%
AAACTATCTCTTCTTCCTAA+TGG	-	tig0021677:12702-12721	Msa1393440:intergenic	30.0%
GAGCTAATAACTCATTATGT+AGG	+	tig0021677:12991-13010	Msa1393440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021677	gene	11011	13812	11011	ID=Msa1393440;Name=Msa1393440
tig0021677	mRNA	11011	13812	11011	ID=Msa1393440-mRNA-1;Parent=Msa1393440;Name=Msa1393440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=41\|1\|1\|1\|0.75\|0.6\|5\|255\|353
tig0021677	exon	11011	11276	11011	ID=Msa1393440-mRNA-1:exon:13788;Parent=Msa1393440-mRNA-1
tig0021677	exon	11541	11732	11541	ID=Msa1393440-mRNA-1:exon:13789;Parent=Msa1393440-mRNA-1
tig0021677	exon	12675	12840	12675	ID=Msa1393440-mRNA-1:exon:13790;Parent=Msa1393440-mRNA-1
tig0021677	exon	13056	13650	13056	ID=Msa1393440-mRNA-1:exon:13791;Parent=Msa1393440-mRNA-1
tig0021677	exon	13674	13812	13674	ID=Msa1393440-mRNA-1:exon:13792;Parent=Msa1393440-mRNA-1
tig0021677	five_prime_UTR	11011	11051	11011	ID=Msa1393440-mRNA-1:five_prime_utr;Parent=Msa1393440-mRNA-1
tig0021677	CDS	11052	11276	11052	ID=Msa1393440-mRNA-1:cds;Parent=Msa1393440-mRNA-1
tig0021677	CDS	11541	11732	11541	ID=Msa1393440-mRNA-1:cds;Parent=Msa1393440-mRNA-1
tig0021677	CDS	12675	12840	12675	ID=Msa1393440-mRNA-1:cds;Parent=Msa1393440-mRNA-1
tig0021677	CDS	13056	13534	13056	ID=Msa1393440-mRNA-1:cds;Parent=Msa1393440-mRNA-1
tig0021677	three_prime_UTR	13535	13650	13535	ID=Msa1393440-mRNA-1:three_prime_utr;Parent=Msa1393440-mRNA-1
tig0021677	three_prime_UTR	13674	13812	13674	ID=Msa1393440-mRNA-1:three_prime_utr;Parent=Msa1393440-mRNA-1

Gene Sequence

>Msa1393440

ATGAACTCTTCTTTTCATCTCACATTGGCAGCTTTGTGCTGTGGAGTGGTTGTGCTTGGAGGGTTTCCCTTCTCTTCAAATGCACAACTTGATGCTAACTTCTATAAGGACACTTGTCCAAATGTCACTTCCATTGTTCAAAGTGTCTTAGCAAATGTTTCTCAGACAGACCCTCGTATGCTTGCCAGTTTCATTAGGCTTCACTTTCATGATTGTTTTGTTCAAGGTTGTGATGGATCACTCTTGTTGAATGACACTGATACTATCGTGAGTGAGCAAGGAGCTTTGCCAAATAACAACTCAATAAGAGGTTTGGATGTTGTGAATCAAATCAAAGCCGCAGTGGAACTTGCTTGCCCTAGTGTTGTGTCTTGTGCAGATATTCTTGCACTTGGTGCTAATATTTCATCTGTTCTGGCTCTTGGTCCTGATTGGGAAGTTCCATTAGGAAGAAGAGATAGTTTGAATGCAAGTCAAACTCTTGCTAATTCAAACCTTCCTGGTCCCCGATTTAATCTTACTGAATTAAAAACCTCATTTCTTAATCAAGGTCTCGACACTACGGATCTTGTTGCACTTTCAGGTGCTCATACGATTGGAAGAGGTGTATGCCTTTTATTCGTTGATCGATTATACAATTTCAGCAACACAGGCGCCCCAGATCCAACTCTTAACACAACCTTACTACAATCATTGCGAGCAATATGCCCTGATATTGGCAATCAAGCTACCAACCTCACCAATTTGGACGTAAGCACCCCCGATGCATTCGACTCAAACTACTACTCGAATCTCCAAGTTGGAAATGGTTTGTTTCAGAGTGATCAAGAGCTTTTTTCCACAACTGGTGCTGATACCATTGACATTGTCAATAGCTTTAGCAGCAATCAAACTCTTTTCTTTGAAGCTTTTAAGGCCTCCATGATTAAAATGGGTAATATTGGAGTGTTAACTGGTACTCAAGGTGAAGTTAGAACACACTGTAACTTTGTTAATACTGTTAGCCTTGCTACCAAAGTCACCAAAGATTCATCAGAAGATGGTATTGTTAGCTCATTCTAA

Protein sequence

>Msa1393440

MNSSFHLTLAALCCGVVVLGGFPFSSNAQLDANFYKDTCPNVTSIVQSVLANVSQTDPRMLASFIRLHFHDCFVQGCDGSLLLNDTDTIVSEQGALPNNNSIRGLDVVNQIKAAVELACPSVVSCADILALGANISSVLALGPDWEVPLGRRDSLNASQTLANSNLPGPRFNLTELKTSFLNQGLDTTDLVALSGAHTIGRGVCLLFVDRLYNFSNTGAPDPTLNTTLLQSLRAICPDIGNQATNLTNLDVSTPDAFDSNYYSNLQVGNGLFQSDQELFSTTGADTIDIVNSFSSNQTLFFEAFKASMIKMGNIGVLTGTQGEVRTHCNFVNTVSLATKVTKDSSEDGIVSSF*