AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533510 MtrunA17_Chr4g0007031 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0533510 MtrunA17_Chr5g0419971 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0533510 MtrunA17_Chr5g0419981 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0533510 MtrunA17_Chr4g0007051 98.643 221 3 0 1 221 1 221 4.31e-160 441
Msa0533510 MtrunA17_Chr2g0285871 96.833 221 7 0 1 221 1 221 2.85e-158 436
Msa0533510 MtrunA17_Chr4g0007041 96.833 221 7 0 1 221 1 221 1.51e-157 434
Msa0533510 MtrunA17_Chr1g0189841 80.180 222 43 1 1 221 1 222 3.81e-129 363
Msa0533510 MtrunA17_Chr6g0449771 77.523 218 47 2 4 221 5 220 1.31e-117 333
Msa0533510 MtrunA17_Chr6g0449751 77.027 222 48 3 1 221 1 220 1.92e-117 333
Msa0533510 MtrunA17_Chr6g0449731 77.419 217 47 2 4 220 5 219 6.00e-117 332
Msa0533510 MtrunA17_Chr6g0449761 75.115 217 53 1 1 217 1 216 7.63e-115 328
Msa0533510 MtrunA17_Chr6g0449781 63.470 219 77 3 3 221 4 219 7.78e-90 263
Msa0533510 MtrunA17_Chr6g0449791 61.058 208 81 0 1 208 1 208 9.19e-88 258
Msa0533510 MtrunA17_Chr1g0156131 58.986 217 78 3 1 215 1 208 2.54e-81 241
Msa0533510 MtrunA17_Chr2g0292831 60.500 200 69 4 19 215 19 211 2.06e-78 234
Msa0533510 MtrunA17_Chr2g0292901 59.701 201 70 5 19 215 19 212 1.67e-73 221
Msa0533510 MtrunA17_Chr2g0292861 64.162 173 56 4 47 215 7 177 1.24e-71 216
Msa0533510 MtrunA17_Chr2g0292841 63.584 173 57 4 47 215 7 177 9.97e-70 211
Msa0533510 MtrunA17_Chr1g0193671 46.479 213 107 3 5 215 6 213 2.38e-61 191
Msa0533510 MtrunA17_Chr1g0193421 46.500 200 100 3 18 215 20 214 2.00e-54 173
Msa0533510 MtrunA17_Chr7g0271211 47.208 197 97 3 21 215 19 210 2.21e-52 168
Msa0533510 MtrunA17_Chr5g0414971 45.960 198 99 4 21 215 26 218 4.30e-50 162
Msa0533510 MtrunA17_Chr2g0292911 65.833 120 36 3 47 163 7 124 1.83e-47 153
Msa0533510 MtrunA17_Chr1g0210761 41.827 208 89 7 19 215 20 206 2.74e-44 147
Msa0533510 MtrunA17_Chr2g0300561 43.721 215 107 6 1 213 1 203 4.71e-43 144
Msa0533510 MtrunA17_Chr1g0178711 37.104 221 127 5 2 215 5 220 1.98e-42 143
Msa0533510 MtrunA17_Chr2g0300581 38.967 213 113 5 4 214 7 204 3.21e-39 134
Msa0533510 MtrunA17_Chr2g0300591 39.151 212 112 5 4 213 7 203 3.50e-39 134
Msa0533510 MtrunA17_Chr8g0335851 38.532 218 118 5 4 219 11 214 1.31e-36 127
Msa0533510 MtrunA17_Chr8g0343911 37.963 216 117 6 1 214 2 202 6.04e-35 123
Msa0533510 MtrunA17_Chr8g0344021 39.086 197 100 5 1 190 1 184 1.60e-34 122
Msa0533510 MtrunA17_Chr8g0343934 40.331 181 95 5 1 179 1 170 6.43e-34 120
Msa0533510 MtrunA17_Chr3g0084531 40.201 199 105 6 1 197 1 187 1.39e-33 119
Msa0533510 MtrunA17_Chr2g0297231 37.441 211 116 6 1 206 1 200 7.96e-32 115
Msa0533510 MtrunA17_Chr2g0297241 37.441 211 116 6 1 206 1 200 9.06e-32 115
Msa0533510 MtrunA17_Chr2g0313961 36.967 211 117 6 1 206 1 200 4.60e-31 113
Msa0533510 MtrunA17_Chr8g0343954 35.023 217 126 6 1 215 1 204 9.62e-31 112
Msa0533510 MtrunA17_Chr8g0344051 40.782 179 94 4 1 176 1 170 3.43e-30 111
Msa0533510 MtrunA17_Chr8g0343961 34.562 217 127 6 1 215 1 204 3.62e-30 110
Msa0533510 MtrunA17_Chr3g0130241 38.418 177 103 3 5 179 72 244 1.28e-29 111
Msa0533510 MtrunA17_Chr2g0301611 37.989 179 98 5 1 177 1 168 1.81e-29 109
Msa0533510 MtrunA17_Chr3g0084521 37.811 201 106 7 1 197 1 186 3.35e-29 108
Msa0533510 MtrunA17_Chr3g0084511 37.811 201 106 7 1 197 1 186 3.57e-29 108
Msa0533510 MtrunA17_Chr2g0321601 34.101 217 117 7 2 214 7 201 1.64e-28 106
Msa0533510 MtrunA17_Chr2g0302171 36.493 211 118 6 1 206 1 200 1.91e-28 106
Msa0533510 MtrunA17_Chr5g0411961 35.238 210 122 5 1 206 1 200 1.09e-27 104
Msa0533510 MtrunA17_Chr2g0302541 36.493 211 118 6 1 206 1 200 1.52e-27 104
Msa0533510 MtrunA17_Chr4g0026191 34.101 217 116 7 3 214 9 203 1.56e-27 103
Msa0533510 MtrunA17_Chr4g0026201 36.000 200 102 6 20 214 25 203 1.87e-27 103
Msa0533510 MtrunA17_Chr2g0321581 41.985 131 70 3 85 214 77 202 2.12e-27 103
Msa0533510 MtrunA17_Chr2g0321591 41.221 131 71 3 85 214 77 202 5.28e-27 102
Msa0533510 MtrunA17_Chr8g0344031 35.023 217 128 6 1 215 1 206 6.07e-27 102
Msa0533510 MtrunA17_Chr8g0343921 33.971 209 127 6 7 213 1 200 4.76e-26 100
Msa0533510 MtrunA17_Chr8g0344041 34.500 200 118 5 13 206 12 204 9.59e-26 99.8
Msa0533510 MtrunA17_Chr7g0217811 37.097 186 105 5 26 206 22 200 9.97e-25 96.7
Msa0533510 MtrunA17_Chr4g0003361 36.782 174 102 4 43 215 34 200 1.17e-24 96.7
Msa0533510 MtrunA17_Chr4g0012651 37.097 186 105 5 26 206 22 200 2.58e-24 95.9
Msa0533510 MtrunA17_Chr3g0115141 35.484 186 104 6 27 206 26 201 2.09e-23 93.6
Msa0533510 MtrunA17_Chr2g0286171 33.796 216 125 8 3 215 7 207 3.25e-23 92.8
Msa0533510 MtrunA17_Chr2g0292881 65.517 58 19 1 93 150 1 57 4.11e-20 80.5
Msa0533510 MtrunA17_Chr3g0084551 34.146 205 113 9 1 202 1 186 9.33e-20 84.3
Msa0533510 MtrunA17_Chr3g0084501 38.393 112 60 4 1 110 1 105 3.39e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533510 AT3G05950.1 64.444 225 72 4 4 221 5 228 6.74e-95 277
Msa0533510 AT5G39110.1 64.455 211 73 1 7 215 9 219 3.83e-93 272
Msa0533510 AT5G39150.1 63.303 218 77 2 1 215 1 218 4.23e-93 272
Msa0533510 AT5G39180.1 63.303 218 77 2 1 215 1 218 1.06e-92 271
Msa0533510 AT5G39120.1 64.455 211 72 2 7 215 9 218 1.18e-92 271
Msa0533510 AT5G39160.1 63.927 219 74 3 1 215 1 218 3.05e-91 267
Msa0533510 AT5G39190.1 63.927 219 74 3 1 215 1 218 4.47e-91 267
Msa0533510 AT5G39130.1 64.593 209 71 2 9 215 11 218 1.32e-90 266
Msa0533510 AT4G14630.1 61.644 219 80 2 1 215 3 221 8.41e-89 261
Msa0533510 AT5G39160.3 61.644 219 75 3 1 215 1 214 1.54e-86 255
Msa0533510 AT3G04200.1 60.000 215 83 3 1 213 6 219 2.59e-83 247
Msa0533510 AT5G38910.1 60.455 220 80 4 1 215 1 218 5.12e-80 239
Msa0533510 AT5G39190.2 58.065 217 68 2 1 215 1 196 6.22e-79 235
Msa0533510 AT5G38960.1 60.891 202 75 3 17 215 21 221 1.19e-78 235
Msa0533510 AT5G39160.2 57.604 217 69 2 1 215 1 196 1.47e-78 234
Msa0533510 AT5G38930.1 62.121 198 72 2 20 215 24 220 4.17e-78 234
Msa0533510 AT5G38940.1 60.914 197 74 2 21 215 25 220 4.41e-78 234
Msa0533510 AT5G38940.2 60.914 197 74 2 21 215 49 244 6.00e-78 234
Msa0533510 AT3G04170.1 55.502 209 87 3 8 214 12 216 7.77e-74 223
Msa0533510 AT3G04190.1 55.721 201 86 2 15 213 19 218 5.49e-73 221
Msa0533510 AT3G04150.1 53.456 217 95 3 3 214 4 219 6.87e-72 218
Msa0533510 AT3G04180.1 54.229 201 89 2 15 213 19 218 5.01e-70 213
Msa0533510 AT3G04150.2 50.655 229 96 3 3 214 4 232 6.25e-70 214
Msa0533510 AT5G38910.2 49.545 220 67 4 1 215 1 181 1.96e-56 177
Msa0533510 AT1G02335.1 43.925 214 111 4 4 215 8 214 2.00e-54 174
Msa0533510 AT3G62020.1 45.540 213 107 5 6 215 8 214 2.32e-53 171
Msa0533510 AT1G09560.1 45.274 201 103 3 17 215 19 214 2.43e-53 171
Msa0533510 AT3G05930.1 47.291 203 98 4 3 202 5 201 5.53e-53 170
Msa0533510 AT1G18970.1 46.500 200 98 4 18 215 25 217 7.22e-52 167
Msa0533510 AT5G26700.1 46.875 192 88 5 26 213 25 206 1.38e-50 164
Msa0533510 AT1G18980.1 46.000 200 99 4 18 215 25 217 1.51e-49 161
Msa0533510 AT3G62020.2 46.667 180 90 3 39 215 9 185 2.01e-47 155
Msa0533510 AT3G10080.1 40.394 203 112 5 17 215 21 218 4.03e-45 150
Msa0533510 AT1G10460.1 41.709 199 108 5 21 214 18 213 8.94e-45 149
Msa0533510 AT3G10080.2 40.394 203 112 5 17 215 92 289 2.14e-44 150
Msa0533510 AT5G20630.1 42.857 210 108 6 1 208 1 200 5.50e-43 144
Msa0533510 AT5G61750.1 41.622 185 103 2 4 186 1 182 8.84e-41 138
Msa0533510 AT1G72610.1 41.053 190 103 6 26 213 19 201 4.59e-34 121
Msa0533510 AT1G74820.1 38.660 194 110 4 24 215 38 224 4.24e-33 119
Msa0533510 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.43e-18 78.2

Find 65 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 4_1:+8523539 None:intergenic
TTTCAACTGAATGTTGGATA+TGG 0.274546 4_1:-8522962 Msa0533510:CDS
CTGAATGGATAATTGTCTTT+AGG 0.278273 4_1:-8522734 Msa0533510:three_prime_UTR
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 4_1:-8523628 Msa0533510:CDS
TGAAAATGAATTAGACCAAT+TGG 0.315504 4_1:+8522980 None:intergenic
TTGAGATCCTAGTGCATTAG+AGG 0.333822 4_1:+8523231 None:intergenic
ATTATCTTCAAAAGCAATCT+TGG 0.335628 4_1:-8522802 Msa0533510:CDS
CTTATCCACTTGAAAAGCTT+TGG 0.335788 4_1:+8522835 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 4_1:-8523173 Msa0533510:CDS
GAGTGCCTTCGAGTACTATA+AGG 0.397511 4_1:+8523086 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.401215 4_1:-8523634 Msa0533510:CDS
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4_1:-8523259 Msa0533510:CDS
AGTTGATTGCTTACTCTGAA+TGG 0.403007 4_1:-8522749 Msa0533510:three_prime_UTR
TACAATAATAATAAGTAGAG+AGG 0.404707 4_1:+8522686 None:intergenic
ATATACATACCACCATCTTT+GGG 0.405165 4_1:+8523540 None:intergenic
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4_1:+8523119 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4_1:-8522995 Msa0533510:CDS
TAAAGAGCCGGTTGTTGTCT+TGG 0.425026 4_1:+8523038 None:intergenic
CAAAAGTCTTGGAGAGGGCT+GGG 0.429933 4_1:+8523579 None:intergenic
CTCGAAGGCACTCTTTATGT+TGG 0.443268 4_1:-8523076 Msa0533510:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4_1:+8523283 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 4_1:-8523199 Msa0533510:CDS
CATCAAACCAAGACAACAAC+CGG 0.452231 4_1:-8523045 Msa0533510:CDS
GAAAATGAATTAGACCAATT+GGG 0.461091 4_1:+8522981 None:intergenic
TTTGCAACTGTGATAACTCC+TGG 0.466515 4_1:+8522902 None:intergenic
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4_1:+8523103 None:intergenic
ACAAAAGTCTTGGAGAGGGC+TGG 0.468953 4_1:+8523578 None:intergenic
TTGGTATGACAACAACTAGT+TGG 0.479536 4_1:-8522783 Msa0533510:exon
TAATTTGCAGTATTTGTGAA+TGG 0.482769 4_1:-8523322 Msa0533510:intron
GGCAACGCTGTTGCTATCGC+TGG 0.484128 4_1:-8522941 Msa0533510:CDS
TGATTGCAACACAAAAGTCT+TGG 0.490396 4_1:+8523568 None:intergenic
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4_1:+8523118 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4_1:-8523258 Msa0533510:CDS
CTATTCGGACTTAACACGCT+TGG 0.510323 4_1:-8523184 Msa0533510:CDS
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4_1:+8522860 None:intergenic
AATTTGCAGTATTTGTGAAT+GGG 0.515890 4_1:-8523321 Msa0533510:intron
AATAGTTGGTCTACAGTGAC+TGG 0.527501 4_1:+8523202 None:intergenic
AGGGCTGGGGTCAGAAGCAA+AGG 0.530574 4_1:+8523593 None:intergenic
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 4_1:+8523188 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4_1:+8523133 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4_1:+8523282 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4_1:-8523020 Msa0533510:CDS
GTCAGAAGCAAAGGCAAGAG+AGG 0.546110 4_1:+8523602 None:intergenic
GCAATCAAAGACCCCAAAGA+TGG 0.554146 4_1:-8523552 Msa0533510:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4_1:+8522850 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 4_1:+8523628 None:intergenic
ACAATAATAATAAGTAGAGA+GGG 0.558687 4_1:+8522687 None:intergenic
AAAAGTCTTGGAGAGGGCTG+GGG 0.564168 4_1:+8523580 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 4_1:+8523015 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4_1:+8523104 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4_1:-8522920 Msa0533510:CDS
TGAGCACCTTGGTAAAGAGC+CGG 0.579420 4_1:+8523026 None:intergenic
GGGAATGCCTCTAATGCACT+AGG 0.589101 4_1:-8523238 Msa0533510:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4_1:+8523107 None:intergenic
TAGAGAGGGTTGCTTGCACA+AGG 0.601352 4_1:+8522701 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 4_1:-8523549 Msa0533510:intron
CAACACAAAAGTCTTGGAGA+GGG 0.634245 4_1:+8523574 None:intergenic
TATACATACCACCATCTTTG+GGG 0.639620 4_1:+8523541 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4_1:+8523115 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 4_1:+8523573 None:intergenic
CCACCTCACATCCACCCTAG+AGG 0.660499 4_1:-8523118 Msa0533510:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4_1:+8523284 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 4_1:-8523091 Msa0533510:CDS
TTTACCAAGGTGCTCAACAA+GGG 0.669433 4_1:-8523019 Msa0533510:CDS
CAACAACCGGCTCTTTACCA+AGG 0.674974 4_1:-8523032 Msa0533510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACAACTAAATTTTT+AGG - chr4_1:8522734-8522753 Msa0533510:three_prime_UTR 10.0%
!!! TTAATTACAACTAAATTTTT+AGG - chr4_1:8522734-8522753 Msa0533510:three_prime_UTR 10.0%
!! TTTATATATGCAAATATTAG+AGG - chr4_1:8522757-8522776 Msa0533510:three_prime_UTR 15.0%
!! TTTATATATGCAAATATTAG+AGG - chr4_1:8522757-8522776 Msa0533510:three_prime_UTR 15.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr4_1:8522722-8522741 None:intergenic 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr4_1:8522799-8522818 Msa0533510:CDS 20.0%
!! ACAATAATAATAAGTAGAGA+GGG + chr4_1:8523549-8523568 None:intergenic 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr4_1:8523550-8523569 None:intergenic 20.0%
!!! GTTTTGTTTTAAGTTGAATT+TGG - chr4_1:8523608-8523627 Msa0533510:CDS 20.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr4_1:8522722-8522741 None:intergenic 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr4_1:8522799-8522818 Msa0533510:CDS 20.0%
!! ACAATAATAATAAGTAGAGA+GGG + chr4_1:8523549-8523568 None:intergenic 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr4_1:8523550-8523569 None:intergenic 20.0%
!!! GTTTTGTTTTAAGTTGAATT+TGG - chr4_1:8523608-8523627 Msa0533510:CDS 20.0%
!! TATGCAAATATTAGAGGTTT+TGG - chr4_1:8522763-8522782 Msa0533510:three_prime_UTR 25.0%
! CAAAAGATTCTATATTGACA+AGG + chr4_1:8522796-8522815 None:intergenic 25.0%
!!! GTTTTTTTGTTTAGATAGCT+AGG - chr4_1:8522830-8522849 Msa0533510:CDS 25.0%
!! TAATTTGCAGTATTTGTGAA+TGG - chr4_1:8522911-8522930 Msa0533510:CDS 25.0%
! AATTTGCAGTATTTGTGAAT+GGG - chr4_1:8522912-8522931 Msa0533510:CDS 25.0%
! GAAAATGAATTAGACCAATT+GGG + chr4_1:8523255-8523274 None:intergenic 25.0%
! TGAAAATGAATTAGACCAAT+TGG + chr4_1:8523256-8523275 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG - chr4_1:8523265-8523284 Msa0533510:CDS 25.0%
! ATTATCTTCAAAAGCAATCT+TGG - chr4_1:8523431-8523450 Msa0533510:intron 25.0%
!! TATGCAAATATTAGAGGTTT+TGG - chr4_1:8522763-8522782 Msa0533510:three_prime_UTR 25.0%
! CAAAAGATTCTATATTGACA+AGG + chr4_1:8522796-8522815 None:intergenic 25.0%
!!! GTTTTTTTGTTTAGATAGCT+AGG - chr4_1:8522830-8522849 Msa0533510:CDS 25.0%
!! TAATTTGCAGTATTTGTGAA+TGG - chr4_1:8522911-8522930 Msa0533510:CDS 25.0%
! AATTTGCAGTATTTGTGAAT+GGG - chr4_1:8522912-8522931 Msa0533510:CDS 25.0%
! GAAAATGAATTAGACCAATT+GGG + chr4_1:8523255-8523274 None:intergenic 25.0%
! TGAAAATGAATTAGACCAAT+TGG + chr4_1:8523256-8523275 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG - chr4_1:8523265-8523284 Msa0533510:CDS 25.0%
! ATTATCTTCAAAAGCAATCT+TGG - chr4_1:8523431-8523450 Msa0533510:intron 25.0%
ATATACATACCACCATCTTT+GGG + chr4_1:8522696-8522715 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr4_1:8522697-8522716 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG - chr4_1:8523271-8523290 Msa0533510:CDS 30.0%
CTGAATGGATAATTGTCTTT+AGG - chr4_1:8523499-8523518 Msa0533510:intron 30.0%
ATATACATACCACCATCTTT+GGG + chr4_1:8522696-8522715 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr4_1:8522697-8522716 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG - chr4_1:8523271-8523290 Msa0533510:CDS 30.0%
CTGAATGGATAATTGTCTTT+AGG - chr4_1:8523499-8523518 Msa0533510:intron 30.0%
ATACTTCCTTGTTAGCATCT+TGG - chr4_1:8522599-8522618 Msa0533510:three_prime_UTR 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_1:8522668-8522687 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr4_1:8522695-8522714 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_1:8522954-8522973 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_1:8522974-8522993 Msa0533510:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_1:8522975-8522994 Msa0533510:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr4_1:8523060-8523079 Msa0533510:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr4_1:8523393-8523412 Msa0533510:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr4_1:8523401-8523420 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG - chr4_1:8523450-8523469 Msa0533510:intron 35.0%
AGTTGATTGCTTACTCTGAA+TGG - chr4_1:8523484-8523503 Msa0533510:intron 35.0%
ATACTTCCTTGTTAGCATCT+TGG - chr4_1:8522599-8522618 Msa0533510:three_prime_UTR 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_1:8522668-8522687 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr4_1:8522695-8522714 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_1:8522954-8522973 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_1:8522974-8522993 Msa0533510:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_1:8522975-8522994 Msa0533510:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr4_1:8523060-8523079 Msa0533510:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr4_1:8523393-8523412 Msa0533510:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr4_1:8523401-8523420 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG - chr4_1:8523450-8523469 Msa0533510:intron 35.0%
AGTTGATTGCTTACTCTGAA+TGG - chr4_1:8523484-8523503 Msa0533510:intron 35.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_1:8522662-8522681 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_1:8522953-8522972 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr4_1:8523005-8523024 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr4_1:8523034-8523053 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_1:8523034-8523053 Msa0533510:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_1:8523132-8523151 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_1:8523133-8523152 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr4_1:8523142-8523161 Msa0533510:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG - chr4_1:8523188-8523207 Msa0533510:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr4_1:8523214-8523233 Msa0533510:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_1:8523238-8523257 Msa0533510:CDS 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr4_1:8523334-8523353 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_1:8523376-8523395 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_1:8523386-8523405 None:intergenic 40.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_1:8522662-8522681 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_1:8522953-8522972 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr4_1:8523005-8523024 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr4_1:8523034-8523053 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_1:8523034-8523053 Msa0533510:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_1:8523132-8523151 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_1:8523133-8523152 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr4_1:8523142-8523161 Msa0533510:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG - chr4_1:8523188-8523207 Msa0533510:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr4_1:8523214-8523233 Msa0533510:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_1:8523238-8523257 Msa0533510:CDS 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr4_1:8523334-8523353 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_1:8523376-8523395 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_1:8523386-8523405 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG + chr4_1:8522608-8522627 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr4_1:8522605-8522624 Msa0533510:three_prime_UTR 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_1:8522663-8522682 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_1:8522681-8522700 Msa0533510:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_1:8522684-8522703 Msa0533510:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_1:8522952-8522971 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr4_1:8523048-8523067 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr4_1:8523049-8523068 Msa0533510:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_1:8523103-8523122 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr4_1:8523150-8523169 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr4_1:8523157-8523176 Msa0533510:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG + chr4_1:8523198-8523217 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr4_1:8523213-8523232 Msa0533510:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_1:8523313-8523332 Msa0533510:CDS 45.0%
CCAAAGCCAAGATGCTAACA+AGG + chr4_1:8522608-8522627 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr4_1:8522605-8522624 Msa0533510:three_prime_UTR 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_1:8522663-8522682 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_1:8522681-8522700 Msa0533510:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_1:8522684-8522703 Msa0533510:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_1:8522952-8522971 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr4_1:8523048-8523067 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr4_1:8523049-8523068 Msa0533510:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_1:8523103-8523122 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr4_1:8523150-8523169 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr4_1:8523157-8523176 Msa0533510:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG + chr4_1:8523198-8523217 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr4_1:8523213-8523232 Msa0533510:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_1:8523313-8523332 Msa0533510:CDS 45.0%
GTCAGAAGCAAAGGCAAGAG+AGG + chr4_1:8522634-8522653 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr4_1:8522656-8522675 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr4_1:8522657-8522676 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr4_1:8522658-8522677 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr4_1:8522995-8523014 Msa0533510:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_1:8523084-8523103 Msa0533510:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_1:8523085-8523104 Msa0533510:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG - chr4_1:8523201-8523220 Msa0533510:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG + chr4_1:8523210-8523229 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr4_1:8523221-8523240 None:intergenic 50.0%
TAGAGAGGGTTGCTTGCACA+AGG + chr4_1:8523535-8523554 None:intergenic 50.0%
GTCAGAAGCAAAGGCAAGAG+AGG + chr4_1:8522634-8522653 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr4_1:8522656-8522675 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr4_1:8522657-8522676 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr4_1:8522658-8522677 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr4_1:8522995-8523014 Msa0533510:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_1:8523084-8523103 Msa0533510:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_1:8523085-8523104 Msa0533510:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG - chr4_1:8523201-8523220 Msa0533510:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG + chr4_1:8523210-8523229 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr4_1:8523221-8523240 None:intergenic 50.0%
TAGAGAGGGTTGCTTGCACA+AGG + chr4_1:8523535-8523554 None:intergenic 50.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_1:8523117-8523136 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_1:8523121-8523140 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_1:8523129-8523148 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_1:8523117-8523136 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_1:8523121-8523140 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_1:8523129-8523148 None:intergenic 55.0%
AGGGCTGGGGTCAGAAGCAA+AGG + chr4_1:8522643-8522662 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_1:8523118-8523137 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_1:8523115-8523134 Msa0533510:CDS 60.0%
GGCAACGCTGTTGCTATCGC+TGG - chr4_1:8523292-8523311 Msa0533510:CDS 60.0%
AGGGCTGGGGTCAGAAGCAA+AGG + chr4_1:8522643-8522662 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_1:8523118-8523137 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_1:8523115-8523134 Msa0533510:CDS 60.0%
GGCAACGCTGTTGCTATCGC+TGG - chr4_1:8523292-8523311 Msa0533510:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 8522562 8523693 8522562 ID=Msa0533510;Name=Msa0533510
chr4_1 mRNA 8522562 8523693 8522562 ID=Msa0533510-mRNA-1;Parent=Msa0533510;Name=Msa0533510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=26|1|1|1|1|1|2|225|221
chr4_1 exon 8522562 8523334 8522562 ID=Msa0533510-mRNA-1:exon:2851;Parent=Msa0533510-mRNA-1
chr4_1 exon 8523550 8523693 8523550 ID=Msa0533510-mRNA-1:exon:2850;Parent=Msa0533510-mRNA-1
chr4_1 five_prime_UTR 8523668 8523693 8523668 ID=Msa0533510-mRNA-1:five_prime_utr;Parent=Msa0533510-mRNA-1
chr4_1 CDS 8523550 8523667 8523550 ID=Msa0533510-mRNA-1:cds;Parent=Msa0533510-mRNA-1
chr4_1 CDS 8522787 8523334 8522787 ID=Msa0533510-mRNA-1:cds;Parent=Msa0533510-mRNA-1
chr4_1 three_prime_UTR 8522562 8522786 8522562 ID=Msa0533510-mRNA-1:three_prime_utr;Parent=Msa0533510-mRNA-1
Gene Sequence

>Msa0533510

ATGAAGATTATATACTTCCTTGTTAGCATCTTGGCTTTGGCATCCTCTCTTGCCTTTGCTTCTGACCCCAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTTGTGAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCAGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAACCAAGACAACAACCGGCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTAATTCATTTTCAACTGAATGTTGGATATGGCAACGCTGTTGCTATCGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACAGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAATCTTGGTATGACAACAACTAG

Protein sequence

>Msa0533510

MKIIYFLVSILALASSLAFASDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*