AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266640 MtrunA17_Chr4g0007031 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0266640 MtrunA17_Chr5g0419971 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0266640 MtrunA17_Chr5g0419981 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0266640 MtrunA17_Chr4g0007051 98.643 221 3 0 1 221 1 221 4.31e-160 441
Msa0266640 MtrunA17_Chr2g0285871 96.833 221 7 0 1 221 1 221 2.85e-158 436
Msa0266640 MtrunA17_Chr4g0007041 96.833 221 7 0 1 221 1 221 1.51e-157 434
Msa0266640 MtrunA17_Chr1g0189841 80.180 222 43 1 1 221 1 222 3.81e-129 363
Msa0266640 MtrunA17_Chr6g0449771 77.523 218 47 2 4 221 5 220 1.31e-117 333
Msa0266640 MtrunA17_Chr6g0449751 77.027 222 48 3 1 221 1 220 1.92e-117 333
Msa0266640 MtrunA17_Chr6g0449731 77.419 217 47 2 4 220 5 219 6.00e-117 332
Msa0266640 MtrunA17_Chr6g0449761 75.115 217 53 1 1 217 1 216 7.63e-115 328
Msa0266640 MtrunA17_Chr6g0449781 63.470 219 77 3 3 221 4 219 7.78e-90 263
Msa0266640 MtrunA17_Chr6g0449791 61.058 208 81 0 1 208 1 208 9.19e-88 258
Msa0266640 MtrunA17_Chr1g0156131 58.986 217 78 3 1 215 1 208 2.54e-81 241
Msa0266640 MtrunA17_Chr2g0292831 60.500 200 69 4 19 215 19 211 2.06e-78 234
Msa0266640 MtrunA17_Chr2g0292901 59.701 201 70 5 19 215 19 212 1.67e-73 221
Msa0266640 MtrunA17_Chr2g0292861 64.162 173 56 4 47 215 7 177 1.24e-71 216
Msa0266640 MtrunA17_Chr2g0292841 63.584 173 57 4 47 215 7 177 9.97e-70 211
Msa0266640 MtrunA17_Chr1g0193671 46.479 213 107 3 5 215 6 213 2.38e-61 191
Msa0266640 MtrunA17_Chr1g0193421 46.500 200 100 3 18 215 20 214 2.00e-54 173
Msa0266640 MtrunA17_Chr7g0271211 47.208 197 97 3 21 215 19 210 2.21e-52 168
Msa0266640 MtrunA17_Chr5g0414971 45.960 198 99 4 21 215 26 218 4.30e-50 162
Msa0266640 MtrunA17_Chr2g0292911 65.833 120 36 3 47 163 7 124 1.83e-47 153
Msa0266640 MtrunA17_Chr1g0210761 41.827 208 89 7 19 215 20 206 2.74e-44 147
Msa0266640 MtrunA17_Chr2g0300561 43.721 215 107 6 1 213 1 203 4.71e-43 144
Msa0266640 MtrunA17_Chr1g0178711 37.104 221 127 5 2 215 5 220 1.98e-42 143
Msa0266640 MtrunA17_Chr2g0300581 38.967 213 113 5 4 214 7 204 3.21e-39 134
Msa0266640 MtrunA17_Chr2g0300591 39.151 212 112 5 4 213 7 203 3.50e-39 134
Msa0266640 MtrunA17_Chr8g0335851 38.532 218 118 5 4 219 11 214 1.31e-36 127
Msa0266640 MtrunA17_Chr8g0343911 37.963 216 117 6 1 214 2 202 6.04e-35 123
Msa0266640 MtrunA17_Chr8g0344021 39.086 197 100 5 1 190 1 184 1.60e-34 122
Msa0266640 MtrunA17_Chr8g0343934 40.331 181 95 5 1 179 1 170 6.43e-34 120
Msa0266640 MtrunA17_Chr3g0084531 40.201 199 105 6 1 197 1 187 1.39e-33 119
Msa0266640 MtrunA17_Chr2g0297231 37.441 211 116 6 1 206 1 200 7.96e-32 115
Msa0266640 MtrunA17_Chr2g0297241 37.441 211 116 6 1 206 1 200 9.06e-32 115
Msa0266640 MtrunA17_Chr2g0313961 36.967 211 117 6 1 206 1 200 4.60e-31 113
Msa0266640 MtrunA17_Chr8g0343954 35.023 217 126 6 1 215 1 204 9.62e-31 112
Msa0266640 MtrunA17_Chr8g0344051 40.782 179 94 4 1 176 1 170 3.43e-30 111
Msa0266640 MtrunA17_Chr8g0343961 34.562 217 127 6 1 215 1 204 3.62e-30 110
Msa0266640 MtrunA17_Chr3g0130241 38.418 177 103 3 5 179 72 244 1.28e-29 111
Msa0266640 MtrunA17_Chr2g0301611 37.989 179 98 5 1 177 1 168 1.81e-29 109
Msa0266640 MtrunA17_Chr3g0084521 37.811 201 106 7 1 197 1 186 3.35e-29 108
Msa0266640 MtrunA17_Chr3g0084511 37.811 201 106 7 1 197 1 186 3.57e-29 108
Msa0266640 MtrunA17_Chr2g0321601 34.101 217 117 7 2 214 7 201 1.64e-28 106
Msa0266640 MtrunA17_Chr2g0302171 36.493 211 118 6 1 206 1 200 1.91e-28 106
Msa0266640 MtrunA17_Chr5g0411961 35.238 210 122 5 1 206 1 200 1.09e-27 104
Msa0266640 MtrunA17_Chr2g0302541 36.493 211 118 6 1 206 1 200 1.52e-27 104
Msa0266640 MtrunA17_Chr4g0026191 34.101 217 116 7 3 214 9 203 1.56e-27 103
Msa0266640 MtrunA17_Chr4g0026201 36.000 200 102 6 20 214 25 203 1.87e-27 103
Msa0266640 MtrunA17_Chr2g0321581 41.985 131 70 3 85 214 77 202 2.12e-27 103
Msa0266640 MtrunA17_Chr2g0321591 41.221 131 71 3 85 214 77 202 5.28e-27 102
Msa0266640 MtrunA17_Chr8g0344031 35.023 217 128 6 1 215 1 206 6.07e-27 102
Msa0266640 MtrunA17_Chr8g0343921 33.971 209 127 6 7 213 1 200 4.76e-26 100
Msa0266640 MtrunA17_Chr8g0344041 34.500 200 118 5 13 206 12 204 9.59e-26 99.8
Msa0266640 MtrunA17_Chr7g0217811 37.097 186 105 5 26 206 22 200 9.97e-25 96.7
Msa0266640 MtrunA17_Chr4g0003361 36.782 174 102 4 43 215 34 200 1.17e-24 96.7
Msa0266640 MtrunA17_Chr4g0012651 37.097 186 105 5 26 206 22 200 2.58e-24 95.9
Msa0266640 MtrunA17_Chr3g0115141 35.484 186 104 6 27 206 26 201 2.09e-23 93.6
Msa0266640 MtrunA17_Chr2g0286171 33.796 216 125 8 3 215 7 207 3.25e-23 92.8
Msa0266640 MtrunA17_Chr2g0292881 65.517 58 19 1 93 150 1 57 4.11e-20 80.5
Msa0266640 MtrunA17_Chr3g0084551 34.146 205 113 9 1 202 1 186 9.33e-20 84.3
Msa0266640 MtrunA17_Chr3g0084501 38.393 112 60 4 1 110 1 105 3.39e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266640 AT3G05950.1 64.444 225 72 4 4 221 5 228 6.74e-95 277
Msa0266640 AT5G39110.1 64.455 211 73 1 7 215 9 219 3.83e-93 272
Msa0266640 AT5G39150.1 63.303 218 77 2 1 215 1 218 4.23e-93 272
Msa0266640 AT5G39180.1 63.303 218 77 2 1 215 1 218 1.06e-92 271
Msa0266640 AT5G39120.1 64.455 211 72 2 7 215 9 218 1.18e-92 271
Msa0266640 AT5G39160.1 63.927 219 74 3 1 215 1 218 3.05e-91 267
Msa0266640 AT5G39190.1 63.927 219 74 3 1 215 1 218 4.47e-91 267
Msa0266640 AT5G39130.1 64.593 209 71 2 9 215 11 218 1.32e-90 266
Msa0266640 AT4G14630.1 61.644 219 80 2 1 215 3 221 8.41e-89 261
Msa0266640 AT5G39160.3 61.644 219 75 3 1 215 1 214 1.54e-86 255
Msa0266640 AT3G04200.1 60.000 215 83 3 1 213 6 219 2.59e-83 247
Msa0266640 AT5G38910.1 60.455 220 80 4 1 215 1 218 5.12e-80 239
Msa0266640 AT5G39190.2 58.065 217 68 2 1 215 1 196 6.22e-79 235
Msa0266640 AT5G38960.1 60.891 202 75 3 17 215 21 221 1.19e-78 235
Msa0266640 AT5G39160.2 57.604 217 69 2 1 215 1 196 1.47e-78 234
Msa0266640 AT5G38930.1 62.121 198 72 2 20 215 24 220 4.17e-78 234
Msa0266640 AT5G38940.1 60.914 197 74 2 21 215 25 220 4.41e-78 234
Msa0266640 AT5G38940.2 60.914 197 74 2 21 215 49 244 6.00e-78 234
Msa0266640 AT3G04170.1 55.502 209 87 3 8 214 12 216 7.77e-74 223
Msa0266640 AT3G04190.1 55.721 201 86 2 15 213 19 218 5.49e-73 221
Msa0266640 AT3G04150.1 53.456 217 95 3 3 214 4 219 6.87e-72 218
Msa0266640 AT3G04180.1 54.229 201 89 2 15 213 19 218 5.01e-70 213
Msa0266640 AT3G04150.2 50.655 229 96 3 3 214 4 232 6.25e-70 214
Msa0266640 AT5G38910.2 49.545 220 67 4 1 215 1 181 1.96e-56 177
Msa0266640 AT1G02335.1 43.925 214 111 4 4 215 8 214 2.00e-54 174
Msa0266640 AT3G62020.1 45.540 213 107 5 6 215 8 214 2.32e-53 171
Msa0266640 AT1G09560.1 45.274 201 103 3 17 215 19 214 2.43e-53 171
Msa0266640 AT3G05930.1 47.291 203 98 4 3 202 5 201 5.53e-53 170
Msa0266640 AT1G18970.1 46.500 200 98 4 18 215 25 217 7.22e-52 167
Msa0266640 AT5G26700.1 46.875 192 88 5 26 213 25 206 1.38e-50 164
Msa0266640 AT1G18980.1 46.000 200 99 4 18 215 25 217 1.51e-49 161
Msa0266640 AT3G62020.2 46.667 180 90 3 39 215 9 185 2.01e-47 155
Msa0266640 AT3G10080.1 40.394 203 112 5 17 215 21 218 4.03e-45 150
Msa0266640 AT1G10460.1 41.709 199 108 5 21 214 18 213 8.94e-45 149
Msa0266640 AT3G10080.2 40.394 203 112 5 17 215 92 289 2.14e-44 150
Msa0266640 AT5G20630.1 42.857 210 108 6 1 208 1 200 5.50e-43 144
Msa0266640 AT5G61750.1 41.622 185 103 2 4 186 1 182 8.84e-41 138
Msa0266640 AT1G72610.1 41.053 190 103 6 26 213 19 201 4.59e-34 121
Msa0266640 AT1G74820.1 38.660 194 110 4 24 215 38 224 4.24e-33 119
Msa0266640 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.43e-18 78.2

Find 65 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 2_2:+67388094 None:intergenic
TTTCAACTGAATGTTGGATA+TGG 0.274546 2_2:-67387517 Msa0266640:CDS
CTGAATGGATAATTGTCTTT+AGG 0.278273 2_2:-67387289 Msa0266640:three_prime_UTR
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 2_2:-67388183 Msa0266640:CDS
TGAAAATGAATTAGACCAAT+TGG 0.315504 2_2:+67387535 None:intergenic
TTGAGATCCTAGTGCATTAG+AGG 0.333822 2_2:+67387786 None:intergenic
ATTATCTTCAAAAGCAATCT+TGG 0.335628 2_2:-67387357 Msa0266640:CDS
CTTATCCACTTGAAAAGCTT+TGG 0.335788 2_2:+67387390 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 2_2:-67387728 Msa0266640:CDS
GAGTGCCTTCGAGTACTATA+AGG 0.397511 2_2:+67387641 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.401215 2_2:-67388189 Msa0266640:CDS
TTCTTCAAACATGTTGAAGC+TGG 0.402098 2_2:-67387814 Msa0266640:CDS
AGTTGATTGCTTACTCTGAA+TGG 0.403007 2_2:-67387304 Msa0266640:three_prime_UTR
TACAATAATAATAAGTAGAG+AGG 0.404707 2_2:+67387241 None:intergenic
ATATACATACCACCATCTTT+GGG 0.405165 2_2:+67388095 None:intergenic
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 2_2:+67387674 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 2_2:-67387550 Msa0266640:CDS
TAAAGAGCCGGTTGTTGTCT+TGG 0.425026 2_2:+67387593 None:intergenic
CAAAAGTCTTGGAGAGGGCT+GGG 0.429933 2_2:+67388134 None:intergenic
CTCGAAGGCACTCTTTATGT+TGG 0.443268 2_2:-67387631 Msa0266640:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 2_2:+67387838 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 2_2:-67387754 Msa0266640:CDS
CATCAAACCAAGACAACAAC+CGG 0.452231 2_2:-67387600 Msa0266640:CDS
GAAAATGAATTAGACCAATT+GGG 0.461091 2_2:+67387536 None:intergenic
TTTGCAACTGTGATAACTCC+TGG 0.466515 2_2:+67387457 None:intergenic
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 2_2:+67387658 None:intergenic
ACAAAAGTCTTGGAGAGGGC+TGG 0.468953 2_2:+67388133 None:intergenic
TTGGTATGACAACAACTAGT+TGG 0.479536 2_2:-67387338 Msa0266640:exon
TAATTTGCAGTATTTGTGAA+TGG 0.482769 2_2:-67387877 Msa0266640:intron
GGCAACGCTGTTGCTATCGC+TGG 0.484128 2_2:-67387496 Msa0266640:CDS
TGATTGCAACACAAAAGTCT+TGG 0.490396 2_2:+67388123 None:intergenic
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 2_2:+67387673 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 2_2:-67387813 Msa0266640:CDS
CTATTCGGACTTAACACGCT+TGG 0.510323 2_2:-67387739 Msa0266640:CDS
AGAACTTCGTCGGAAATAAG+AGG 0.511108 2_2:+67387415 None:intergenic
AATTTGCAGTATTTGTGAAT+GGG 0.515890 2_2:-67387876 Msa0266640:intron
AATAGTTGGTCTACAGTGAC+TGG 0.527501 2_2:+67387757 None:intergenic
AGGGCTGGGGTCAGAAGCAA+AGG 0.530574 2_2:+67388148 None:intergenic
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 2_2:+67387743 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 2_2:+67387688 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 2_2:+67387837 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 2_2:-67387575 Msa0266640:CDS
GTCAGAAGCAAAGGCAAGAG+AGG 0.546110 2_2:+67388157 None:intergenic
GCAATCAAAGACCCCAAAGA+TGG 0.554146 2_2:-67388107 Msa0266640:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 2_2:+67387405 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 2_2:+67388183 None:intergenic
ACAATAATAATAAGTAGAGA+GGG 0.558687 2_2:+67387242 None:intergenic
AAAAGTCTTGGAGAGGGCTG+GGG 0.564168 2_2:+67388135 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 2_2:+67387570 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 2_2:+67387659 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 2_2:-67387475 Msa0266640:CDS
TGAGCACCTTGGTAAAGAGC+CGG 0.579420 2_2:+67387581 None:intergenic
GGGAATGCCTCTAATGCACT+AGG 0.589101 2_2:-67387793 Msa0266640:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 2_2:+67387662 None:intergenic
TAGAGAGGGTTGCTTGCACA+AGG 0.601352 2_2:+67387256 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 2_2:-67388104 Msa0266640:intron
CAACACAAAAGTCTTGGAGA+GGG 0.634245 2_2:+67388129 None:intergenic
TATACATACCACCATCTTTG+GGG 0.639620 2_2:+67388096 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 2_2:+67387670 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 2_2:+67388128 None:intergenic
CCACCTCACATCCACCCTAG+AGG 0.660499 2_2:-67387673 Msa0266640:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 2_2:+67387839 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 2_2:-67387646 Msa0266640:CDS
TTTACCAAGGTGCTCAACAA+GGG 0.669433 2_2:-67387574 Msa0266640:CDS
CAACAACCGGCTCTTTACCA+AGG 0.674974 2_2:-67387587 Msa0266640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACAACTAAATTTTT+AGG - chr2_2:67387289-67387308 Msa0266640:three_prime_UTR 10.0%
!!! TTAATTACAACTAAATTTTT+AGG - chr2_2:67387289-67387308 Msa0266640:three_prime_UTR 10.0%
!! TTTATATATGCAAATATTAG+AGG - chr2_2:67387312-67387331 Msa0266640:three_prime_UTR 15.0%
!! TTTATATATGCAAATATTAG+AGG - chr2_2:67387312-67387331 Msa0266640:three_prime_UTR 15.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr2_2:67387277-67387296 None:intergenic 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr2_2:67387354-67387373 Msa0266640:CDS 20.0%
!! ACAATAATAATAAGTAGAGA+GGG + chr2_2:67388104-67388123 None:intergenic 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr2_2:67388105-67388124 None:intergenic 20.0%
!!! GTTTTGTTTTAAGTTGAATT+TGG - chr2_2:67388163-67388182 Msa0266640:CDS 20.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr2_2:67387277-67387296 None:intergenic 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr2_2:67387354-67387373 Msa0266640:CDS 20.0%
!! ACAATAATAATAAGTAGAGA+GGG + chr2_2:67388104-67388123 None:intergenic 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr2_2:67388105-67388124 None:intergenic 20.0%
!!! GTTTTGTTTTAAGTTGAATT+TGG - chr2_2:67388163-67388182 Msa0266640:CDS 20.0%
!! TATGCAAATATTAGAGGTTT+TGG - chr2_2:67387318-67387337 Msa0266640:three_prime_UTR 25.0%
! CAAAAGATTCTATATTGACA+AGG + chr2_2:67387351-67387370 None:intergenic 25.0%
!!! GTTTTTTTGTTTAGATAGCT+AGG - chr2_2:67387385-67387404 Msa0266640:CDS 25.0%
!! TAATTTGCAGTATTTGTGAA+TGG - chr2_2:67387466-67387485 Msa0266640:CDS 25.0%
! AATTTGCAGTATTTGTGAAT+GGG - chr2_2:67387467-67387486 Msa0266640:CDS 25.0%
! GAAAATGAATTAGACCAATT+GGG + chr2_2:67387810-67387829 None:intergenic 25.0%
! TGAAAATGAATTAGACCAAT+TGG + chr2_2:67387811-67387830 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG - chr2_2:67387820-67387839 Msa0266640:CDS 25.0%
! ATTATCTTCAAAAGCAATCT+TGG - chr2_2:67387986-67388005 Msa0266640:intron 25.0%
!! TATGCAAATATTAGAGGTTT+TGG - chr2_2:67387318-67387337 Msa0266640:three_prime_UTR 25.0%
! CAAAAGATTCTATATTGACA+AGG + chr2_2:67387351-67387370 None:intergenic 25.0%
!!! GTTTTTTTGTTTAGATAGCT+AGG - chr2_2:67387385-67387404 Msa0266640:CDS 25.0%
!! TAATTTGCAGTATTTGTGAA+TGG - chr2_2:67387466-67387485 Msa0266640:CDS 25.0%
! AATTTGCAGTATTTGTGAAT+GGG - chr2_2:67387467-67387486 Msa0266640:CDS 25.0%
! GAAAATGAATTAGACCAATT+GGG + chr2_2:67387810-67387829 None:intergenic 25.0%
! TGAAAATGAATTAGACCAAT+TGG + chr2_2:67387811-67387830 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG - chr2_2:67387820-67387839 Msa0266640:CDS 25.0%
! ATTATCTTCAAAAGCAATCT+TGG - chr2_2:67387986-67388005 Msa0266640:intron 25.0%
ATATACATACCACCATCTTT+GGG + chr2_2:67387251-67387270 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr2_2:67387252-67387271 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG - chr2_2:67387826-67387845 Msa0266640:CDS 30.0%
CTGAATGGATAATTGTCTTT+AGG - chr2_2:67388054-67388073 Msa0266640:intron 30.0%
ATATACATACCACCATCTTT+GGG + chr2_2:67387251-67387270 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr2_2:67387252-67387271 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG - chr2_2:67387826-67387845 Msa0266640:CDS 30.0%
CTGAATGGATAATTGTCTTT+AGG - chr2_2:67388054-67388073 Msa0266640:intron 30.0%
ATACTTCCTTGTTAGCATCT+TGG - chr2_2:67387154-67387173 Msa0266640:three_prime_UTR 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr2_2:67387223-67387242 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr2_2:67387250-67387269 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr2_2:67387509-67387528 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr2_2:67387529-67387548 Msa0266640:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr2_2:67387530-67387549 Msa0266640:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr2_2:67387615-67387634 Msa0266640:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr2_2:67387948-67387967 Msa0266640:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr2_2:67387956-67387975 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG - chr2_2:67388005-67388024 Msa0266640:intron 35.0%
AGTTGATTGCTTACTCTGAA+TGG - chr2_2:67388039-67388058 Msa0266640:intron 35.0%
ATACTTCCTTGTTAGCATCT+TGG - chr2_2:67387154-67387173 Msa0266640:three_prime_UTR 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr2_2:67387223-67387242 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr2_2:67387250-67387269 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr2_2:67387509-67387528 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr2_2:67387529-67387548 Msa0266640:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr2_2:67387530-67387549 Msa0266640:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr2_2:67387615-67387634 Msa0266640:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr2_2:67387948-67387967 Msa0266640:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr2_2:67387956-67387975 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG - chr2_2:67388005-67388024 Msa0266640:intron 35.0%
AGTTGATTGCTTACTCTGAA+TGG - chr2_2:67388039-67388058 Msa0266640:intron 35.0%
CAACACAAAAGTCTTGGAGA+GGG + chr2_2:67387217-67387236 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr2_2:67387508-67387527 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr2_2:67387560-67387579 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr2_2:67387589-67387608 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr2_2:67387589-67387608 Msa0266640:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr2_2:67387687-67387706 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr2_2:67387688-67387707 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr2_2:67387697-67387716 Msa0266640:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG - chr2_2:67387743-67387762 Msa0266640:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr2_2:67387769-67387788 Msa0266640:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr2_2:67387793-67387812 Msa0266640:CDS 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr2_2:67387889-67387908 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr2_2:67387931-67387950 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr2_2:67387941-67387960 None:intergenic 40.0%
CAACACAAAAGTCTTGGAGA+GGG + chr2_2:67387217-67387236 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr2_2:67387508-67387527 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr2_2:67387560-67387579 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr2_2:67387589-67387608 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr2_2:67387589-67387608 Msa0266640:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr2_2:67387687-67387706 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr2_2:67387688-67387707 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr2_2:67387697-67387716 Msa0266640:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG - chr2_2:67387743-67387762 Msa0266640:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr2_2:67387769-67387788 Msa0266640:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr2_2:67387793-67387812 Msa0266640:CDS 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr2_2:67387889-67387908 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr2_2:67387931-67387950 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr2_2:67387941-67387960 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG + chr2_2:67387163-67387182 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr2_2:67387160-67387179 Msa0266640:three_prime_UTR 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr2_2:67387218-67387237 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr2_2:67387236-67387255 Msa0266640:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr2_2:67387239-67387258 Msa0266640:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr2_2:67387507-67387526 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr2_2:67387603-67387622 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr2_2:67387604-67387623 Msa0266640:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr2_2:67387658-67387677 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr2_2:67387705-67387724 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr2_2:67387712-67387731 Msa0266640:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG + chr2_2:67387753-67387772 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr2_2:67387768-67387787 Msa0266640:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr2_2:67387868-67387887 Msa0266640:CDS 45.0%
CCAAAGCCAAGATGCTAACA+AGG + chr2_2:67387163-67387182 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr2_2:67387160-67387179 Msa0266640:three_prime_UTR 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr2_2:67387218-67387237 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr2_2:67387236-67387255 Msa0266640:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr2_2:67387239-67387258 Msa0266640:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr2_2:67387507-67387526 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr2_2:67387603-67387622 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr2_2:67387604-67387623 Msa0266640:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr2_2:67387658-67387677 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr2_2:67387705-67387724 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr2_2:67387712-67387731 Msa0266640:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG + chr2_2:67387753-67387772 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr2_2:67387768-67387787 Msa0266640:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr2_2:67387868-67387887 Msa0266640:CDS 45.0%
GTCAGAAGCAAAGGCAAGAG+AGG + chr2_2:67387189-67387208 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr2_2:67387211-67387230 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr2_2:67387212-67387231 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr2_2:67387213-67387232 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr2_2:67387550-67387569 Msa0266640:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr2_2:67387639-67387658 Msa0266640:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr2_2:67387640-67387659 Msa0266640:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG - chr2_2:67387756-67387775 Msa0266640:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG + chr2_2:67387765-67387784 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr2_2:67387776-67387795 None:intergenic 50.0%
TAGAGAGGGTTGCTTGCACA+AGG + chr2_2:67388090-67388109 None:intergenic 50.0%
GTCAGAAGCAAAGGCAAGAG+AGG + chr2_2:67387189-67387208 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr2_2:67387211-67387230 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr2_2:67387212-67387231 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr2_2:67387213-67387232 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr2_2:67387550-67387569 Msa0266640:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr2_2:67387639-67387658 Msa0266640:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr2_2:67387640-67387659 Msa0266640:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG - chr2_2:67387756-67387775 Msa0266640:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG + chr2_2:67387765-67387784 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr2_2:67387776-67387795 None:intergenic 50.0%
TAGAGAGGGTTGCTTGCACA+AGG + chr2_2:67388090-67388109 None:intergenic 50.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr2_2:67387672-67387691 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr2_2:67387676-67387695 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr2_2:67387684-67387703 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr2_2:67387672-67387691 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr2_2:67387676-67387695 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr2_2:67387684-67387703 None:intergenic 55.0%
AGGGCTGGGGTCAGAAGCAA+AGG + chr2_2:67387198-67387217 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr2_2:67387673-67387692 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr2_2:67387670-67387689 Msa0266640:CDS 60.0%
GGCAACGCTGTTGCTATCGC+TGG - chr2_2:67387847-67387866 Msa0266640:CDS 60.0%
AGGGCTGGGGTCAGAAGCAA+AGG + chr2_2:67387198-67387217 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr2_2:67387673-67387692 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr2_2:67387670-67387689 Msa0266640:CDS 60.0%
GGCAACGCTGTTGCTATCGC+TGG - chr2_2:67387847-67387866 Msa0266640:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 67387117 67388248 67387117 ID=Msa0266640;Name=Msa0266640
chr2_2 mRNA 67387117 67388248 67387117 ID=Msa0266640-mRNA-1;Parent=Msa0266640;Name=Msa0266640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=26|1|1|1|1|1|2|225|221
chr2_2 exon 67387117 67387889 67387117 ID=Msa0266640-mRNA-1:exon:21442;Parent=Msa0266640-mRNA-1
chr2_2 exon 67388105 67388248 67388105 ID=Msa0266640-mRNA-1:exon:21441;Parent=Msa0266640-mRNA-1
chr2_2 five_prime_UTR 67388223 67388248 67388223 ID=Msa0266640-mRNA-1:five_prime_utr;Parent=Msa0266640-mRNA-1
chr2_2 CDS 67388105 67388222 67388105 ID=Msa0266640-mRNA-1:cds;Parent=Msa0266640-mRNA-1
chr2_2 CDS 67387342 67387889 67387342 ID=Msa0266640-mRNA-1:cds;Parent=Msa0266640-mRNA-1
chr2_2 three_prime_UTR 67387117 67387341 67387117 ID=Msa0266640-mRNA-1:three_prime_utr;Parent=Msa0266640-mRNA-1
Gene Sequence

>Msa0266640

ATGAAGATTATATACTTCCTTGTTAGCATCTTGGCTTTGGCATCCTCTCTTGCCTTTGCTTCTGACCCCAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTTGTGAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCAGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAACCAAGACAACAACCGGCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTAATTCATTTTCAACTGAATGTTGGATATGGCAACGCTGTTGCTATCGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACAGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAATCTTGGTATGACAACAACTAG

Protein sequence

>Msa0266640

MKIIYFLVSILALASSLAFASDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*