Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045850 | XP_003592769.1 | 96.061 | 330 | 12 | 1 | 1 | 329 | 1 | 330 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045850 | sp|P22195|PER1_ARAHY | 65.217 | 322 | 105 | 5 | 1 | 321 | 1 | 316 | 1.87e-149 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045850 | G7IF04 | 96.061 | 330 | 12 | 1 | 1 | 329 | 1 | 330 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045850 | Msa0046240 | 0.905663 | 3.384422e-80 | -8.615850e-47 |
| Msa0045850 | Msa0048950 | 0.812160 | 4.875162e-51 | -8.615850e-47 |
| Msa0045850 | Msa0059880 | 0.843025 | 1.805938e-58 | -8.615850e-47 |
| Msa0045850 | Msa0061600 | 0.813571 | 2.393435e-51 | -8.615850e-47 |
| Msa0045850 | Msa0072030 | 0.804715 | 1.890907e-49 | -8.615850e-47 |
| Msa0045850 | Msa0139460 | 0.912099 | 2.868489e-83 | -8.615850e-47 |
| Msa0045850 | Msa0140270 | 0.812533 | 4.040639e-51 | -8.615850e-47 |
| Msa0045850 | Msa0143150 | 0.801089 | 1.061610e-48 | -8.615850e-47 |
| Msa0045850 | Msa0147670 | 0.810404 | 1.172449e-50 | -8.615850e-47 |
| Msa0045850 | Msa0150910 | 0.814265 | 1.682799e-51 | -8.615850e-47 |
| Msa0045850 | Msa0190670 | 0.800504 | 1.397241e-48 | -8.615850e-47 |
| Msa0045850 | Msa0216760 | 0.810465 | 1.137517e-50 | -8.615850e-47 |
| Msa0045850 | Msa0223880 | 0.829671 | 4.517891e-55 | -8.615850e-47 |
| Msa0045850 | Msa0252930 | 0.802810 | 4.702344e-49 | -8.615850e-47 |
| Msa0045850 | Msa0265060 | 0.826040 | 3.373739e-54 | -8.615850e-47 |
| Msa0045850 | Msa0266640 | 0.818719 | 1.692778e-52 | -8.615850e-47 |
| Msa0045850 | Msa0266650 | 0.807173 | 5.751340e-50 | -8.615850e-47 |
| Msa0045850 | Msa0295980 | 0.825926 | 3.591640e-54 | -8.615850e-47 |
| Msa0045850 | Msa0298270 | 0.817498 | 3.196492e-52 | -8.615850e-47 |
| Msa0045850 | Msa0333940 | 0.814707 | 1.343050e-51 | -8.615850e-47 |
| Msa0045850 | Msa0334050 | 0.827562 | 1.461232e-54 | -8.615850e-47 |
| Msa0045850 | Msa0340650 | 0.828743 | 7.588736e-55 | -8.615850e-47 |
| Msa0045850 | Msa0414480 | 0.803036 | 4.221426e-49 | -8.615850e-47 |
| Msa0045850 | Msa0469550 | 0.817785 | 2.754039e-52 | -8.615850e-47 |
| Msa0045850 | Msa0491770 | 0.800540 | 1.374166e-48 | -8.615850e-47 |
| Msa0045850 | Msa0515260 | 0.816562 | 5.188515e-52 | -8.615850e-47 |
| Msa0045850 | Msa0533510 | 0.816551 | 5.216818e-52 | -8.615850e-47 |
| Msa0045850 | Msa0533520 | 0.805159 | 1.526965e-49 | -8.615850e-47 |
| Msa0045850 | Msa0538450 | 0.800695 | 1.277210e-48 | -8.615850e-47 |
| Msa0045850 | Msa0543740 | 0.807023 | 6.188527e-50 | -8.615850e-47 |
| Msa0045850 | Msa0548970 | 0.835815 | 1.346673e-56 | -8.615850e-47 |
| Msa0045850 | Msa0594320 | 0.801217 | 9.991344e-49 | -8.615850e-47 |
| Msa0045850 | Msa0602050 | 0.807712 | 4.422063e-50 | -8.615850e-47 |
| Msa0045850 | Msa0603950 | 0.820934 | 5.276129e-53 | -8.615850e-47 |
| Msa0045850 | Msa0643840 | 0.814193 | 1.744896e-51 | -8.615850e-47 |
| Msa0045850 | Msa0645150 | 0.801350 | 9.385479e-49 | -8.615850e-47 |
| Msa0045850 | Msa0670360 | 0.800969 | 1.123224e-48 | -8.615850e-47 |
| Msa0045850 | Msa0678620 | 0.833383 | 5.505630e-56 | -8.615850e-47 |
| Msa0045850 | Msa0684720 | 0.834421 | 3.026875e-56 | -8.615850e-47 |
| Msa0045850 | Msa0727480 | 0.838327 | 3.072349e-57 | -8.615850e-47 |
| Msa0045850 | Msa0735280 | 0.815288 | 9.980206e-52 | -8.615850e-47 |
| Msa0045850 | Msa0768670 | 0.816878 | 4.405514e-52 | -8.615850e-47 |
| Msa0045850 | Msa0768720 | 0.819513 | 1.116421e-52 | -8.615850e-47 |
| Msa0045850 | Msa0777070 | 0.823688 | 1.210362e-53 | -8.615850e-47 |
| Msa0045850 | Msa0777250 | 0.821640 | 3.626009e-53 | -8.615850e-47 |
| Msa0045850 | Msa0814160 | 0.801888 | 7.278421e-49 | -8.615850e-47 |
| Msa0045850 | Msa0824860 | 0.818094 | 2.344799e-52 | -8.615850e-47 |
| Msa0045850 | Msa0854840 | 0.830844 | 2.336244e-55 | -8.615850e-47 |
| Msa0045850 | Msa0863840 | 0.824879 | 6.353481e-54 | -8.615850e-47 |
| Msa0045850 | Msa0883640 | 0.844570 | 6.965888e-59 | -8.615850e-47 |
| Msa0045850 | Msa0902340 | 0.825065 | 5.741724e-54 | -8.615850e-47 |
| Msa0045850 | Msa0910830 | 0.845721 | 3.403304e-59 | -8.615850e-47 |
| Msa0045850 | Msa0960090 | 0.846408 | 2.212716e-59 | -8.615850e-47 |
| Msa0045850 | Msa0967820 | 0.914366 | 2.085638e-84 | -8.615850e-47 |
| Msa0045850 | Msa0985700 | 0.844454 | 7.487623e-59 | -8.615850e-47 |
| Msa0045850 | Msa0987640 | 0.802730 | 4.882631e-49 | -8.615850e-47 |
| Msa0045850 | Msa1021620 | 0.817413 | 3.341424e-52 | -8.615850e-47 |
| Msa0045850 | Msa1024350 | 0.839146 | 1.886210e-57 | -8.615850e-47 |
| Msa0045850 | Msa1041630 | 0.811229 | 7.772560e-51 | -8.615850e-47 |
| Msa0045850 | Msa1061670 | 0.818539 | 1.859628e-52 | -8.615850e-47 |
| Msa0045850 | Msa1076830 | 0.813705 | 2.236148e-51 | -8.615850e-47 |
| Msa0045850 | Msa1081610 | 0.801465 | 8.892013e-49 | -8.615850e-47 |
| Msa0045850 | Msa1106960 | 0.807120 | 5.904048e-50 | -8.615850e-47 |
| Msa0045850 | Msa1109880 | 0.827248 | 1.737789e-54 | -8.615850e-47 |
| Msa0045850 | Msa1109890 | 0.831010 | 2.127267e-55 | -8.615850e-47 |
| Msa0045850 | Msa1166530 | 0.820085 | 8.262818e-53 | -8.615850e-47 |
| Msa0045850 | Msa1214960 | 0.813803 | 2.127482e-51 | -8.615850e-47 |
| Msa0045850 | Msa1216600 | 0.804260 | 2.353159e-49 | -8.615850e-47 |
| Msa0045850 | Msa1269050 | 0.808613 | 2.841262e-50 | -8.615850e-47 |
| Msa0045850 | Msa1286420 | 0.804585 | 2.012771e-49 | -8.615850e-47 |
| Msa0045850 | Msa1296870 | 0.849219 | 3.720378e-60 | -8.615850e-47 |
| Msa0045850 | Msa1300610 | 0.811058 | 8.466165e-51 | -8.615850e-47 |
| Msa0045850 | Msa1320330 | 0.802783 | 4.762183e-49 | -8.615850e-47 |
| Msa0045850 | Msa1323030 | 0.836189 | 1.082588e-56 | -8.615850e-47 |
| Msa0045850 | Msa1323160 | 0.821768 | 3.386492e-53 | -8.615850e-47 |
| Msa0045850 | Msa1329740 | 0.807690 | 4.468950e-50 | -8.615850e-47 |
| Msa0045850 | Msa1357490 | 0.818437 | 1.961544e-52 | -8.615850e-47 |
| Msa0045850 | Msa1357750 | 0.803682 | 3.103023e-49 | -8.615850e-47 |
| Msa0045850 | Msa1357860 | 0.835646 | 1.486632e-56 | -8.615850e-47 |
| Msa0045850 | Msa1373560 | 0.804832 | 1.787565e-49 | -8.615850e-47 |
| Msa0045850 | Msa1376070 | 0.821133 | 4.747034e-53 | -8.615850e-47 |
| Msa0045850 | Msa1377520 | 0.823768 | 1.159490e-53 | -8.615850e-47 |
| Msa0045850 | Msa1380490 | 0.805259 | 1.454971e-49 | -8.615850e-47 |
| Msa0045850 | Msa1386120 | 0.803523 | 3.347676e-49 | -8.615850e-47 |
| Msa0045850 | Msa1393440 | 0.821938 | 3.094205e-53 | -8.615850e-47 |
| Msa0045850 | Msa1407670 | 0.811964 | 5.380085e-51 | -8.615850e-47 |
| Msa0045850 | Msa1426420 | 0.823513 | 1.330356e-53 | -8.615850e-47 |
| Msa0045850 | Msa1427670 | 0.802968 | 4.360093e-49 | -8.615850e-47 |
| Msa0045850 | Msa1445900 | 0.810079 | 1.377514e-50 | -8.615850e-47 |
| Msa0045850 | Msa1449770 | 0.809822 | 1.564861e-50 | -8.615850e-47 |
| Msa0045850 | Msa1459610 | 0.861603 | 9.135140e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045850 | MtrunA17_Chr1g0213061 | 96.061 | 330 | 12 | 1 | 1 | 329 | 1 | 330 | 0.0 | 653 |
| Msa0045850 | MtrunA17_Chr7g0224371 | 63.303 | 327 | 111 | 5 | 1 | 322 | 1 | 323 | 1.71e-141 | 402 |
| Msa0045850 | MtrunA17_Chr7g0244461 | 60.383 | 313 | 119 | 4 | 10 | 321 | 4 | 312 | 4.28e-136 | 389 |
| Msa0045850 | MtrunA17_Chr7g0244451 | 60.870 | 322 | 119 | 5 | 1 | 321 | 1 | 316 | 2.25e-134 | 384 |
| Msa0045850 | MtrunA17_Chr4g0013201 | 58.900 | 309 | 123 | 3 | 14 | 321 | 33 | 338 | 1.22e-128 | 370 |
| Msa0045850 | MtrunA17_Chr4g0013191 | 61.921 | 302 | 108 | 5 | 24 | 321 | 42 | 340 | 8.08e-128 | 369 |
| Msa0045850 | MtrunA17_Chr2g0320071 | 57.006 | 314 | 131 | 3 | 9 | 321 | 7 | 317 | 2.19e-124 | 359 |
| Msa0045850 | MtrunA17_Chr2g0320101 | 55.312 | 320 | 139 | 3 | 3 | 321 | 1 | 317 | 1.34e-123 | 357 |
| Msa0045850 | MtrunA17_Chr3g0129051 | 57.188 | 313 | 127 | 5 | 9 | 318 | 11 | 319 | 2.41e-123 | 357 |
| Msa0045850 | MtrunA17_Chr2g0320061 | 55.000 | 320 | 141 | 2 | 3 | 321 | 1 | 318 | 2.53e-122 | 354 |
| Msa0045850 | MtrunA17_Chr3g0106901 | 58.385 | 322 | 130 | 3 | 1 | 321 | 5 | 323 | 2.07e-120 | 349 |
| Msa0045850 | MtrunA17_Chr2g0320051 | 54.375 | 320 | 143 | 2 | 3 | 321 | 1 | 318 | 8.52e-120 | 347 |
| Msa0045850 | MtrunA17_Chr3g0114451 | 54.140 | 314 | 140 | 3 | 9 | 321 | 8 | 318 | 1.49e-119 | 347 |
| Msa0045850 | MtrunA17_Chr3g0129061 | 58.387 | 310 | 122 | 5 | 12 | 318 | 14 | 319 | 5.30e-119 | 345 |
| Msa0045850 | MtrunA17_Chr2g0320091 | 54.206 | 321 | 142 | 4 | 3 | 321 | 1 | 318 | 3.15e-116 | 338 |
| Msa0045850 | MtrunA17_Chr3g0106921 | 53.628 | 317 | 139 | 5 | 9 | 321 | 8 | 320 | 7.56e-116 | 337 |
| Msa0045850 | MtrunA17_Chr3g0129041 | 57.143 | 315 | 129 | 4 | 10 | 321 | 11 | 322 | 1.56e-115 | 337 |
| Msa0045850 | MtrunA17_Chr2g0320031 | 52.648 | 321 | 148 | 3 | 3 | 321 | 1 | 319 | 6.27e-115 | 335 |
| Msa0045850 | MtrunA17_Chr5g0432441 | 52.280 | 329 | 146 | 5 | 1 | 321 | 1 | 326 | 7.26e-114 | 333 |
| Msa0045850 | MtrunA17_Chr5g0438021 | 54.747 | 316 | 134 | 6 | 9 | 321 | 16 | 325 | 4.20e-113 | 331 |
| Msa0045850 | MtrunA17_Chr5g0432351 | 53.459 | 318 | 140 | 6 | 9 | 321 | 7 | 321 | 3.67e-112 | 328 |
| Msa0045850 | MtrunA17_Chr5g0432341 | 53.459 | 318 | 140 | 6 | 9 | 321 | 7 | 321 | 1.20e-111 | 327 |
| Msa0045850 | MtrunA17_Chr4g0013171 | 50.949 | 316 | 149 | 4 | 9 | 321 | 9 | 321 | 5.58e-110 | 323 |
| Msa0045850 | MtrunA17_Chr5g0432331 | 51.572 | 318 | 144 | 6 | 9 | 321 | 40 | 352 | 6.65e-108 | 318 |
| Msa0045850 | MtrunA17_Chr3g0107881 | 49.080 | 326 | 159 | 5 | 1 | 321 | 1 | 324 | 1.33e-107 | 317 |
| Msa0045850 | MtrunA17_Chr4g0038151 | 51.534 | 326 | 148 | 6 | 1 | 321 | 1 | 321 | 6.03e-107 | 315 |
| Msa0045850 | MtrunA17_Chr4g0013181 | 52.881 | 295 | 133 | 4 | 30 | 321 | 62 | 353 | 1.75e-105 | 312 |
| Msa0045850 | MtrunA17_Chr4g0038161 | 51.227 | 326 | 148 | 6 | 1 | 321 | 1 | 320 | 3.32e-105 | 310 |
| Msa0045850 | MtrunA17_Chr4g0038171 | 50.613 | 326 | 151 | 5 | 1 | 321 | 1 | 321 | 3.67e-105 | 310 |
| Msa0045850 | MtrunA17_Chr4g0043391 | 50.307 | 326 | 152 | 5 | 1 | 321 | 4 | 324 | 4.23e-105 | 310 |
| Msa0045850 | MtrunA17_Chr5g0402581 | 45.897 | 329 | 167 | 4 | 1 | 321 | 1 | 326 | 6.64e-97 | 290 |
| Msa0045850 | MtrunA17_Chr5g0402571 | 44.681 | 329 | 171 | 4 | 1 | 321 | 1 | 326 | 6.61e-95 | 284 |
| Msa0045850 | MtrunA17_Chr7g0258811 | 44.308 | 325 | 168 | 6 | 9 | 322 | 50 | 372 | 4.38e-93 | 281 |
| Msa0045850 | MtrunA17_Chr5g0404721 | 47.195 | 303 | 150 | 3 | 27 | 321 | 30 | 330 | 6.53e-93 | 280 |
| Msa0045850 | MtrunA17_Chr1g0175561 | 46.296 | 324 | 157 | 7 | 9 | 322 | 11 | 327 | 7.96e-93 | 279 |
| Msa0045850 | MtrunA17_Chr8g0372601 | 45.687 | 313 | 160 | 3 | 17 | 321 | 20 | 330 | 2.43e-92 | 278 |
| Msa0045850 | MtrunA17_Chr2g0292211 | 46.624 | 311 | 155 | 5 | 23 | 324 | 36 | 344 | 6.13e-91 | 276 |
| Msa0045850 | MtrunA17_Chr2g0292181 | 45.981 | 311 | 157 | 4 | 23 | 324 | 34 | 342 | 1.10e-89 | 272 |
| Msa0045850 | MtrunA17_Chr2g0292151 | 45.659 | 311 | 158 | 4 | 23 | 324 | 25 | 333 | 1.86e-89 | 271 |
| Msa0045850 | MtrunA17_Chr2g0291751 | 45.253 | 316 | 162 | 4 | 18 | 324 | 20 | 333 | 3.59e-89 | 271 |
| Msa0045850 | MtrunA17_Chr5g0400331 | 47.302 | 315 | 149 | 5 | 21 | 321 | 20 | 331 | 7.93e-89 | 269 |
| Msa0045850 | MtrunA17_Chr1g0155611 | 46.711 | 304 | 151 | 4 | 27 | 321 | 46 | 347 | 1.44e-88 | 269 |
| Msa0045850 | MtrunA17_Chr4g0070951 | 42.769 | 325 | 171 | 5 | 9 | 322 | 10 | 330 | 1.54e-88 | 268 |
| Msa0045850 | MtrunA17_Chr2g0292111 | 45.338 | 311 | 159 | 4 | 23 | 324 | 25 | 333 | 2.47e-88 | 269 |
| Msa0045850 | MtrunA17_Chr2g0292251 | 44.984 | 309 | 159 | 4 | 25 | 324 | 26 | 332 | 5.15e-87 | 265 |
| Msa0045850 | MtrunA17_Chr2g0292091 | 43.168 | 322 | 171 | 5 | 13 | 324 | 9 | 328 | 5.91e-87 | 265 |
| Msa0045850 | MtrunA17_Chr2g0292241 | 43.077 | 325 | 171 | 5 | 12 | 324 | 11 | 333 | 2.32e-86 | 263 |
| Msa0045850 | MtrunA17_Chr2g0299691 | 44.411 | 331 | 166 | 7 | 5 | 322 | 34 | 359 | 8.01e-86 | 262 |
| Msa0045850 | MtrunA17_Chr2g0292261 | 43.243 | 333 | 178 | 5 | 5 | 328 | 7 | 337 | 1.86e-84 | 259 |
| Msa0045850 | MtrunA17_Chr4g0068621 | 45.098 | 306 | 160 | 3 | 22 | 321 | 33 | 336 | 1.98e-84 | 258 |
| Msa0045850 | MtrunA17_Chr2g0292101 | 43.750 | 320 | 168 | 6 | 15 | 324 | 12 | 329 | 6.35e-84 | 257 |
| Msa0045850 | MtrunA17_Chr2g0292271 | 44.051 | 311 | 163 | 4 | 23 | 324 | 25 | 333 | 1.33e-83 | 256 |
| Msa0045850 | MtrunA17_Chr5g0432401 | 43.533 | 317 | 130 | 7 | 9 | 320 | 13 | 285 | 9.06e-83 | 252 |
| Msa0045850 | MtrunA17_Chr6g0477071 | 41.587 | 315 | 174 | 7 | 9 | 321 | 36 | 342 | 3.75e-82 | 252 |
| Msa0045850 | MtrunA17_Chr1g0188431 | 41.104 | 326 | 177 | 7 | 1 | 321 | 12 | 327 | 4.74e-82 | 251 |
| Msa0045850 | MtrunA17_Chr3g0128061 | 41.796 | 323 | 176 | 5 | 9 | 322 | 8 | 327 | 1.60e-80 | 248 |
| Msa0045850 | MtrunA17_Chr2g0279041 | 41.566 | 332 | 176 | 6 | 1 | 321 | 1 | 325 | 4.72e-79 | 244 |
| Msa0045850 | MtrunA17_Chr4g0013721 | 42.857 | 308 | 162 | 5 | 22 | 321 | 95 | 396 | 6.65e-79 | 246 |
| Msa0045850 | MtrunA17_Chr5g0421411 | 44.718 | 284 | 143 | 7 | 50 | 321 | 4 | 285 | 2.00e-78 | 241 |
| Msa0045850 | MtrunA17_Chr2g0292291 | 43.590 | 312 | 164 | 6 | 23 | 324 | 26 | 335 | 7.43e-78 | 242 |
| Msa0045850 | MtrunA17_Chr2g0322861 | 40.810 | 321 | 177 | 6 | 10 | 321 | 70 | 386 | 1.68e-77 | 242 |
| Msa0045850 | MtrunA17_Chr4g0013821 | 41.558 | 308 | 166 | 5 | 23 | 322 | 24 | 325 | 5.29e-77 | 239 |
| Msa0045850 | MtrunA17_Chr4g0024121 | 40.248 | 323 | 178 | 7 | 10 | 321 | 8 | 326 | 1.79e-76 | 237 |
| Msa0045850 | MtrunA17_Chr1g0204011 | 41.463 | 328 | 179 | 6 | 1 | 321 | 1 | 322 | 4.39e-76 | 236 |
| Msa0045850 | MtrunA17_Chr1g0157051 | 38.838 | 327 | 181 | 8 | 3 | 320 | 1 | 317 | 1.07e-74 | 233 |
| Msa0045850 | MtrunA17_Chr1g0164891 | 42.904 | 303 | 158 | 7 | 31 | 321 | 93 | 392 | 1.47e-74 | 234 |
| Msa0045850 | MtrunA17_Chr7g0254201 | 42.053 | 302 | 163 | 6 | 25 | 321 | 18 | 312 | 7.28e-74 | 230 |
| Msa0045850 | MtrunA17_Chr1g0194151 | 39.692 | 325 | 179 | 7 | 10 | 321 | 13 | 333 | 8.63e-74 | 231 |
| Msa0045850 | MtrunA17_Chr7g0268501 | 40.557 | 323 | 175 | 7 | 9 | 321 | 5 | 320 | 2.36e-73 | 229 |
| Msa0045850 | MtrunA17_Chr7g0268521 | 40.557 | 323 | 175 | 7 | 9 | 321 | 5 | 320 | 2.36e-73 | 229 |
| Msa0045850 | MtrunA17_Chr1g0194271 | 39.577 | 331 | 178 | 6 | 10 | 321 | 13 | 340 | 8.95e-73 | 228 |
| Msa0045850 | MtrunA17_Chr5g0405991 | 40.498 | 321 | 171 | 8 | 10 | 321 | 7 | 316 | 3.88e-72 | 226 |
| Msa0045850 | MtrunA17_Chr6g0460711 | 40.252 | 318 | 179 | 7 | 11 | 323 | 5 | 316 | 1.50e-71 | 224 |
| Msa0045850 | MtrunA17_Chr8g0371381 | 39.871 | 311 | 166 | 7 | 21 | 321 | 20 | 319 | 6.94e-70 | 220 |
| Msa0045850 | MtrunA17_Chr4g0063671 | 40.184 | 326 | 172 | 8 | 8 | 321 | 6 | 320 | 3.31e-69 | 218 |
| Msa0045850 | MtrunA17_Chr2g0296621 | 40.132 | 304 | 163 | 7 | 27 | 322 | 50 | 342 | 7.66e-69 | 218 |
| Msa0045850 | MtrunA17_Chr7g0254231 | 39.130 | 299 | 175 | 6 | 25 | 322 | 20 | 312 | 1.52e-68 | 216 |
| Msa0045850 | MtrunA17_Chr2g0316481 | 39.458 | 332 | 159 | 8 | 25 | 317 | 74 | 402 | 8.99e-66 | 212 |
| Msa0045850 | MtrunA17_Chr1g0197411 | 38.199 | 322 | 187 | 6 | 10 | 321 | 11 | 330 | 9.78e-65 | 207 |
| Msa0045850 | MtrunA17_Chr2g0316191 | 38.855 | 332 | 162 | 8 | 25 | 317 | 74 | 403 | 2.31e-64 | 209 |
| Msa0045850 | MtrunA17_Chr2g0316831 | 37.462 | 331 | 167 | 6 | 25 | 317 | 110 | 438 | 7.22e-64 | 208 |
| Msa0045850 | MtrunA17_Chr2g0279061 | 43.893 | 262 | 129 | 6 | 71 | 321 | 12 | 266 | 1.25e-63 | 202 |
| Msa0045850 | MtrunA17_Chr3g0114461 | 53.226 | 186 | 84 | 2 | 137 | 321 | 9 | 192 | 2.00e-63 | 199 |
| Msa0045850 | MtrunA17_Chr2g0316791 | 38.671 | 331 | 163 | 8 | 25 | 317 | 74 | 402 | 5.00e-63 | 205 |
| Msa0045850 | MtrunA17_Chr6g0451571 | 39.938 | 323 | 179 | 9 | 9 | 321 | 17 | 334 | 1.12e-62 | 202 |
| Msa0045850 | MtrunA17_Chr6g0467251 | 35.736 | 333 | 197 | 6 | 3 | 325 | 4 | 329 | 2.94e-62 | 201 |
| Msa0045850 | MtrunA17_Chr7g0225221 | 36.615 | 325 | 195 | 7 | 3 | 321 | 1 | 320 | 4.75e-62 | 200 |
| Msa0045850 | MtrunA17_Chr4g0053871 | 39.571 | 326 | 182 | 8 | 1 | 317 | 1 | 320 | 1.04e-60 | 197 |
| Msa0045850 | MtrunA17_Chr4g0076211 | 39.073 | 302 | 166 | 7 | 28 | 321 | 42 | 333 | 4.70e-60 | 195 |
| Msa0045850 | MtrunA17_Chr8g0364291 | 36.728 | 324 | 193 | 6 | 7 | 321 | 4 | 324 | 4.94e-60 | 195 |
| Msa0045850 | MtrunA17_Chr6g0467161 | 39.057 | 297 | 174 | 6 | 27 | 321 | 45 | 336 | 6.12e-60 | 195 |
| Msa0045850 | MtrunA17_Chr2g0311251 | 38.757 | 338 | 158 | 11 | 25 | 320 | 9 | 339 | 9.21e-60 | 195 |
| Msa0045850 | MtrunA17_Chr5g0413051 | 37.419 | 310 | 178 | 7 | 25 | 321 | 71 | 377 | 2.81e-59 | 194 |
| Msa0045850 | MtrunA17_Chr1g0181511 | 34.539 | 304 | 189 | 6 | 25 | 322 | 25 | 324 | 6.39e-59 | 192 |
| Msa0045850 | MtrunA17_Chr2g0311241 | 35.657 | 373 | 156 | 11 | 25 | 317 | 58 | 426 | 7.09e-59 | 195 |
| Msa0045850 | MtrunA17_Chr5g0401431 | 37.538 | 325 | 181 | 9 | 11 | 320 | 11 | 328 | 6.81e-58 | 189 |
| Msa0045850 | MtrunA17_Chr1g0181431 | 34.437 | 302 | 192 | 5 | 25 | 322 | 25 | 324 | 2.13e-57 | 188 |
| Msa0045850 | MtrunA17_Chr2g0278671 | 36.570 | 309 | 181 | 6 | 23 | 321 | 20 | 323 | 3.75e-57 | 187 |
| Msa0045850 | MtrunA17_Chr1g0148021 | 37.764 | 331 | 185 | 10 | 3 | 321 | 7 | 328 | 7.83e-57 | 187 |
| Msa0045850 | MtrunA17_Chr4g0046131 | 36.280 | 328 | 187 | 9 | 9 | 317 | 18 | 342 | 1.11e-56 | 187 |
| Msa0045850 | MtrunA17_Chr4g0075241 | 34.211 | 304 | 188 | 5 | 26 | 321 | 28 | 327 | 1.15e-54 | 181 |
| Msa0045850 | MtrunA17_Chr2g0329641 | 34.641 | 306 | 185 | 6 | 26 | 321 | 35 | 335 | 1.23e-53 | 179 |
| Msa0045850 | MtrunA17_Chr6g0467121 | 34.627 | 335 | 195 | 9 | 4 | 322 | 38 | 364 | 1.64e-53 | 180 |
| Msa0045850 | MtrunA17_Chr1g0181481 | 34.323 | 303 | 191 | 6 | 25 | 322 | 25 | 324 | 3.63e-53 | 177 |
| Msa0045850 | MtrunA17_Chr3g0136751 | 35.152 | 330 | 195 | 7 | 3 | 321 | 1 | 322 | 4.21e-52 | 174 |
| Msa0045850 | MtrunA17_Chr4g0072091 | 36.842 | 304 | 173 | 8 | 26 | 317 | 23 | 319 | 1.04e-51 | 173 |
| Msa0045850 | MtrunA17_Chr4g0074851 | 34.835 | 333 | 198 | 9 | 3 | 321 | 1 | 328 | 3.46e-51 | 172 |
| Msa0045850 | MtrunA17_Chr3g0114491 | 60.714 | 112 | 44 | 0 | 26 | 137 | 17 | 128 | 1.64e-44 | 149 |
| Msa0045850 | MtrunA17_Chr2g0316811 | 35.889 | 287 | 128 | 8 | 25 | 257 | 48 | 332 | 4.23e-44 | 154 |
| Msa0045850 | MtrunA17_Chr2g0292281 | 40.930 | 215 | 106 | 5 | 119 | 324 | 17 | 219 | 3.81e-39 | 138 |
| Msa0045850 | MtrunA17_Chr2g0316141 | 37.218 | 266 | 144 | 10 | 73 | 317 | 11 | 274 | 2.92e-37 | 134 |
| Msa0045850 | MtrunA17_Chr2g0316181 | 37.218 | 266 | 144 | 10 | 73 | 317 | 11 | 274 | 2.92e-37 | 134 |
| Msa0045850 | MtrunA17_Chr4g0004591 | 30.284 | 317 | 154 | 6 | 27 | 317 | 77 | 352 | 3.16e-37 | 136 |
| Msa0045850 | MtrunA17_Chr5g0432321 | 50.420 | 119 | 55 | 2 | 148 | 265 | 17 | 132 | 6.33e-33 | 119 |
| Msa0045850 | MtrunA17_Chr1g0181491 | 38.462 | 117 | 70 | 2 | 19 | 135 | 4 | 118 | 2.72e-22 | 91.3 |
| Msa0045850 | MtrunA17_Chr3g0104101 | 36.111 | 144 | 79 | 6 | 190 | 322 | 9 | 150 | 3.62e-22 | 90.9 |
| Msa0045850 | MtrunA17_Chr6g0468731 | 60.870 | 69 | 23 | 2 | 66 | 134 | 22 | 86 | 2.86e-21 | 86.7 |
| Msa0045850 | MtrunA17_Chr2g0316771 | 32.065 | 184 | 86 | 6 | 176 | 322 | 7 | 188 | 9.14e-20 | 85.5 |
| Msa0045850 | MtrunA17_Chr1g0181501 | 30.052 | 193 | 125 | 6 | 136 | 322 | 2 | 190 | 2.69e-19 | 84.3 |
| Msa0045850 | MtrunA17_Chr7g0254181 | 45.745 | 94 | 49 | 2 | 99 | 192 | 31 | 122 | 2.40e-17 | 78.2 |
| Msa0045850 | MtrunA17_Chr1g0196191 | 52.055 | 73 | 34 | 1 | 65 | 137 | 23 | 94 | 2.76e-17 | 77.8 |
| Msa0045850 | MtrunA17_Chr5g0432361 | 40.217 | 92 | 51 | 2 | 230 | 320 | 20 | 108 | 9.14e-17 | 75.1 |
| Msa0045850 | MtrunA17_Chr3g0137751 | 34.507 | 142 | 80 | 4 | 59 | 196 | 106 | 238 | 3.21e-13 | 69.3 |
| Msa0045850 | MtrunA17_Chr4g0013811 | 39.744 | 78 | 46 | 1 | 134 | 210 | 2 | 79 | 2.19e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045850 | AT5G05340.1 | 56.000 | 300 | 126 | 4 | 25 | 321 | 28 | 324 | 1.08e-114 | 335 |
| Msa0045850 | AT5G58400.1 | 51.242 | 322 | 150 | 4 | 4 | 321 | 7 | 325 | 1.43e-108 | 320 |
| Msa0045850 | AT1G14550.1 | 48.418 | 316 | 157 | 4 | 10 | 321 | 8 | 321 | 1.11e-102 | 304 |
| Msa0045850 | AT5G58390.1 | 50.160 | 313 | 153 | 2 | 11 | 321 | 5 | 316 | 1.29e-100 | 299 |
| Msa0045850 | AT5G06730.1 | 45.994 | 337 | 169 | 6 | 4 | 329 | 8 | 342 | 8.78e-97 | 291 |
| Msa0045850 | AT4G36430.1 | 44.268 | 314 | 165 | 3 | 17 | 322 | 20 | 331 | 6.84e-96 | 287 |
| Msa0045850 | AT5G06720.1 | 46.061 | 330 | 165 | 6 | 3 | 321 | 6 | 333 | 2.36e-95 | 286 |
| Msa0045850 | AT1G14540.1 | 46.057 | 317 | 163 | 4 | 7 | 321 | 5 | 315 | 4.37e-95 | 285 |
| Msa0045850 | AT2G18150.1 | 46.488 | 299 | 150 | 3 | 31 | 321 | 40 | 336 | 6.05e-95 | 285 |
| Msa0045850 | AT2G18140.1 | 44.144 | 333 | 165 | 5 | 8 | 321 | 5 | 335 | 7.96e-93 | 280 |
| Msa0045850 | AT1G44970.1 | 47.436 | 312 | 153 | 4 | 19 | 321 | 37 | 346 | 3.38e-92 | 278 |
| Msa0045850 | AT5G19890.1 | 45.538 | 325 | 159 | 6 | 8 | 321 | 10 | 327 | 1.31e-91 | 276 |
| Msa0045850 | AT4G08770.1 | 46.326 | 313 | 155 | 5 | 23 | 324 | 20 | 330 | 2.46e-89 | 271 |
| Msa0045850 | AT5G66390.1 | 44.728 | 313 | 163 | 3 | 17 | 321 | 23 | 333 | 1.70e-88 | 269 |
| Msa0045850 | AT2G38380.1 | 45.794 | 321 | 160 | 6 | 13 | 321 | 15 | 333 | 2.69e-88 | 269 |
| Msa0045850 | AT3G50990.1 | 43.976 | 332 | 173 | 5 | 1 | 321 | 12 | 341 | 3.59e-88 | 268 |
| Msa0045850 | AT2G38390.1 | 44.860 | 321 | 163 | 6 | 13 | 321 | 15 | 333 | 6.06e-88 | 268 |
| Msa0045850 | AT3G32980.1 | 43.452 | 336 | 175 | 7 | 2 | 324 | 4 | 337 | 3.20e-87 | 266 |
| Msa0045850 | AT4G08780.1 | 44.409 | 313 | 161 | 5 | 23 | 324 | 20 | 330 | 2.10e-85 | 261 |
| Msa0045850 | AT2G35380.1 | 45.092 | 326 | 164 | 4 | 9 | 321 | 12 | 335 | 2.93e-85 | 260 |
| Msa0045850 | AT3G49120.1 | 43.119 | 327 | 171 | 7 | 11 | 324 | 14 | 338 | 1.85e-84 | 259 |
| Msa0045850 | AT1G49570.1 | 45.016 | 311 | 157 | 6 | 20 | 319 | 41 | 348 | 3.00e-84 | 258 |
| Msa0045850 | AT3G49110.1 | 43.119 | 327 | 171 | 7 | 11 | 324 | 15 | 339 | 1.54e-83 | 257 |
| Msa0045850 | AT4G16270.1 | 46.205 | 303 | 151 | 4 | 27 | 321 | 50 | 348 | 9.58e-82 | 252 |
| Msa0045850 | AT1G68850.1 | 41.558 | 308 | 165 | 6 | 27 | 321 | 30 | 335 | 1.05e-80 | 249 |
| Msa0045850 | AT2G22420.1 | 41.693 | 319 | 172 | 6 | 11 | 321 | 7 | 319 | 1.40e-80 | 248 |
| Msa0045850 | AT5G19880.1 | 42.433 | 337 | 170 | 8 | 1 | 321 | 1 | 329 | 8.38e-79 | 244 |
| Msa0045850 | AT4G33420.1 | 40.575 | 313 | 177 | 6 | 11 | 321 | 20 | 325 | 2.79e-77 | 239 |
| Msa0045850 | AT4G33420.2 | 40.575 | 313 | 177 | 6 | 11 | 321 | 67 | 372 | 1.28e-76 | 239 |
| Msa0045850 | AT3G03670.1 | 41.433 | 321 | 174 | 6 | 10 | 321 | 6 | 321 | 1.10e-75 | 235 |
| Msa0045850 | AT3G01190.1 | 42.415 | 323 | 159 | 8 | 13 | 321 | 12 | 321 | 1.00e-74 | 233 |
| Msa0045850 | AT5G15180.1 | 39.222 | 334 | 175 | 7 | 5 | 321 | 7 | 329 | 1.17e-74 | 233 |
| Msa0045850 | AT5G51890.1 | 39.339 | 333 | 179 | 10 | 1 | 321 | 1 | 322 | 2.01e-72 | 227 |
| Msa0045850 | AT2G41480.1 | 38.650 | 326 | 180 | 8 | 9 | 321 | 10 | 328 | 1.45e-71 | 225 |
| Msa0045850 | AT4G11290.1 | 40.373 | 322 | 177 | 8 | 12 | 321 | 8 | 326 | 3.30e-71 | 224 |
| Msa0045850 | AT1G05260.1 | 38.973 | 331 | 184 | 7 | 1 | 322 | 5 | 326 | 5.37e-71 | 224 |
| Msa0045850 | AT5G42180.1 | 38.679 | 318 | 178 | 7 | 11 | 320 | 8 | 316 | 5.20e-70 | 221 |
| Msa0045850 | AT5G64120.1 | 41.414 | 297 | 161 | 5 | 31 | 321 | 39 | 328 | 5.80e-70 | 221 |
| Msa0045850 | AT5G40150.1 | 40.864 | 301 | 172 | 5 | 25 | 321 | 30 | 328 | 1.24e-68 | 218 |
| Msa0045850 | AT3G28200.1 | 41.333 | 300 | 171 | 5 | 25 | 321 | 19 | 316 | 1.47e-68 | 217 |
| Msa0045850 | AT1G05240.1 | 38.907 | 311 | 163 | 8 | 27 | 321 | 26 | 325 | 2.97e-68 | 216 |
| Msa0045850 | AT1G05250.1 | 38.907 | 311 | 163 | 8 | 27 | 321 | 26 | 325 | 2.97e-68 | 216 |
| Msa0045850 | AT3G21770.1 | 39.550 | 311 | 173 | 7 | 18 | 317 | 18 | 324 | 6.94e-68 | 216 |
| Msa0045850 | AT4G26010.1 | 37.188 | 320 | 189 | 8 | 3 | 321 | 1 | 309 | 2.87e-67 | 213 |
| Msa0045850 | AT4G26010.2 | 37.188 | 320 | 189 | 8 | 3 | 321 | 29 | 337 | 6.81e-67 | 213 |
| Msa0045850 | AT1G71695.1 | 41.830 | 306 | 163 | 8 | 27 | 324 | 44 | 342 | 2.92e-66 | 213 |
| Msa0045850 | AT5G17820.1 | 38.871 | 319 | 176 | 7 | 10 | 321 | 7 | 313 | 3.86e-66 | 211 |
| Msa0045850 | AT5G17820.2 | 38.871 | 319 | 176 | 7 | 10 | 321 | 60 | 366 | 3.02e-65 | 210 |
| Msa0045850 | AT4G33870.1 | 35.072 | 345 | 155 | 6 | 27 | 317 | 68 | 397 | 6.55e-65 | 210 |
| Msa0045850 | AT5G39580.1 | 38.580 | 324 | 183 | 8 | 6 | 321 | 4 | 319 | 1.09e-63 | 204 |
| Msa0045850 | AT1G77100.1 | 39.498 | 319 | 181 | 9 | 9 | 321 | 7 | 319 | 2.91e-63 | 203 |
| Msa0045850 | AT2G39040.1 | 40.968 | 310 | 167 | 8 | 25 | 321 | 44 | 350 | 1.01e-62 | 203 |
| Msa0045850 | AT5G14130.1 | 37.578 | 322 | 186 | 7 | 9 | 321 | 15 | 330 | 1.01e-62 | 202 |
| Msa0045850 | AT5G14130.2 | 37.578 | 322 | 186 | 7 | 9 | 321 | 56 | 371 | 2.58e-62 | 202 |
| Msa0045850 | AT4G25980.1 | 36.228 | 334 | 192 | 9 | 1 | 321 | 1 | 326 | 6.33e-62 | 200 |
| Msa0045850 | AT2G35380.2 | 46.341 | 246 | 117 | 4 | 89 | 321 | 4 | 247 | 9.40e-62 | 197 |
| Msa0045850 | AT1G34510.1 | 37.742 | 310 | 184 | 7 | 13 | 321 | 8 | 309 | 4.57e-61 | 197 |
| Msa0045850 | AT1G30870.1 | 37.255 | 306 | 172 | 6 | 27 | 322 | 51 | 346 | 6.64e-61 | 198 |
| Msa0045850 | AT5G64100.1 | 38.284 | 303 | 167 | 7 | 29 | 321 | 39 | 331 | 4.74e-60 | 196 |
| Msa0045850 | AT1G24110.1 | 37.771 | 323 | 183 | 8 | 9 | 321 | 8 | 322 | 2.40e-59 | 194 |
| Msa0045850 | AT5G64110.1 | 38.226 | 327 | 176 | 8 | 9 | 321 | 16 | 330 | 3.58e-59 | 193 |
| Msa0045850 | AT2G18980.1 | 38.462 | 325 | 180 | 9 | 9 | 321 | 7 | 323 | 6.53e-59 | 192 |
| Msa0045850 | AT5G67400.1 | 36.503 | 326 | 186 | 8 | 9 | 317 | 4 | 325 | 4.33e-57 | 188 |
| Msa0045850 | AT2G24800.1 | 37.864 | 309 | 172 | 7 | 25 | 321 | 29 | 329 | 4.28e-56 | 185 |
| Msa0045850 | AT2G34060.1 | 37.209 | 344 | 182 | 12 | 1 | 317 | 6 | 342 | 8.31e-56 | 185 |
| Msa0045850 | AT3G49960.1 | 38.889 | 324 | 170 | 12 | 12 | 317 | 12 | 325 | 8.48e-56 | 184 |
| Msa0045850 | AT4G31760.1 | 37.461 | 323 | 179 | 9 | 11 | 321 | 15 | 326 | 8.90e-56 | 184 |
| Msa0045850 | AT4G30170.1 | 37.299 | 311 | 175 | 8 | 23 | 321 | 23 | 325 | 2.78e-55 | 183 |
| Msa0045850 | AT4G37530.1 | 36.334 | 311 | 174 | 9 | 23 | 317 | 23 | 325 | 3.00e-55 | 183 |
| Msa0045850 | AT5G47000.1 | 36.697 | 327 | 192 | 9 | 7 | 321 | 8 | 331 | 1.34e-54 | 181 |
| Msa0045850 | AT4G37520.1 | 37.742 | 310 | 167 | 10 | 25 | 317 | 25 | 325 | 2.05e-54 | 181 |
| Msa0045850 | AT2G37130.1 | 35.738 | 305 | 185 | 7 | 24 | 321 | 27 | 327 | 4.58e-54 | 180 |
| Msa0045850 | AT2G43480.1 | 35.065 | 308 | 182 | 7 | 26 | 321 | 34 | 335 | 1.14e-53 | 179 |
| Msa0045850 | AT2G37130.2 | 35.786 | 299 | 181 | 7 | 30 | 321 | 2 | 296 | 4.18e-53 | 176 |
| Msa0045850 | AT4G37520.2 | 38.065 | 310 | 163 | 12 | 25 | 317 | 25 | 322 | 1.06e-52 | 176 |
| Msa0045850 | AT3G17070.1 | 36.152 | 343 | 187 | 11 | 1 | 321 | 7 | 339 | 1.62e-52 | 176 |
| Msa0045850 | AT5G24070.1 | 35.238 | 315 | 186 | 8 | 20 | 322 | 28 | 336 | 2.52e-52 | 176 |
| Msa0045850 | AT4G21960.1 | 33.742 | 326 | 198 | 7 | 10 | 321 | 6 | 327 | 7.47e-52 | 174 |
| Msa0045850 | AT4G17690.1 | 37.000 | 300 | 178 | 8 | 27 | 319 | 26 | 321 | 7.42e-51 | 172 |
| Msa0045850 | AT4G37530.2 | 38.403 | 263 | 139 | 8 | 23 | 269 | 23 | 278 | 9.30e-51 | 170 |
| Msa0045850 | AT5G22410.1 | 32.500 | 320 | 199 | 8 | 9 | 318 | 10 | 322 | 8.10e-49 | 166 |
| Msa0045850 | AT4G25980.2 | 40.415 | 193 | 111 | 3 | 1 | 193 | 46 | 234 | 3.56e-42 | 148 |
| Msa0045850 | AT5G39580.2 | 40.191 | 209 | 115 | 5 | 6 | 213 | 4 | 203 | 3.59e-40 | 141 |
| Msa0045850 | AT2G24800.2 | 40.933 | 193 | 101 | 5 | 25 | 214 | 29 | 211 | 2.41e-36 | 131 |
| Msa0045850 | AT3G17070.2 | 34.815 | 270 | 148 | 9 | 69 | 321 | 18 | 276 | 1.03e-35 | 130 |
| Msa0045850 | AT3G42570.1 | 35.374 | 147 | 81 | 4 | 50 | 193 | 14 | 149 | 3.46e-16 | 75.1 |
| Msa0045850 | AT4G32320.1 | 26.821 | 302 | 141 | 12 | 14 | 300 | 83 | 319 | 1.03e-12 | 68.6 |
Find 57 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCTTTAAGTTCTGTTAA+AGG | 0.213559 | 1_1:-77827416 | Msa0045850:CDS |
| CTAATTGTACGAACAGCTTT+TGG | 0.248258 | 1_1:+77827308 | None:intergenic |
| GAAGAAATGGTTACTTTATC+AGG | 0.253613 | 1_1:-77826542 | Msa0045850:intron |
| CACTCTGATCAACAACTATT+TGG | 0.263540 | 1_1:-77825657 | Msa0045850:CDS |
| TTCGGCTGTGAAACCTTTCT+TGG | 0.264682 | 1_1:+77826562 | None:intergenic |
| AAGGCCATCAAGATTCAAAA+AGG | 0.295453 | 1_1:+77826598 | None:intergenic |
| TACAATTAGGAAAGCAGTTC+AGG | 0.312689 | 1_1:-77827294 | Msa0045850:CDS |
| TCTTGGCGAAAGCAGTAATA+AGG | 0.313799 | 1_1:+77826579 | None:intergenic |
| CAAAAGCTGTTCGTACAATT+AGG | 0.330721 | 1_1:-77827307 | Msa0045850:CDS |
| CCTCTCAGCGAATTTGCGTT+TGG | 0.333568 | 1_1:+77826921 | None:intergenic |
| CTCTCAGCGAATTTGCGTTT+GGG | 0.337491 | 1_1:+77826922 | None:intergenic |
| GAGTTATCAGCTAATTTCTA+TGG | 0.342682 | 1_1:-77827341 | Msa0045850:CDS |
| CTATTAATTACATGTATGAT+TGG | 0.345529 | 1_1:-77827380 | Msa0045850:CDS |
| TGATCAGGTGCTCACACAAT+AGG | 0.350317 | 1_1:-77825879 | Msa0045850:intron |
| TCTTCTTACTTGAGCGTTTG+TGG | 0.357638 | 1_1:+77825623 | None:intergenic |
| CCAAAACTTGTTGAAAAGTA+AGG | 0.368077 | 1_1:-77825688 | Msa0045850:CDS |
| CAAAGATGGAATGTACTATT+AGG | 0.369687 | 1_1:-77826674 | Msa0045850:CDS |
| TAAGCAGTGGTAGTGTTTGA+TGG | 0.370648 | 1_1:+77825477 | None:intergenic |
| TCAATGCTTAGTCCACTTAC+TGG | 0.377441 | 1_1:-77825543 | Msa0045850:CDS |
| TGATAAAGTAACCATTTCTT+CGG | 0.412644 | 1_1:+77826544 | None:intergenic |
| ACATCTTAGCCCTTGCTGCT+AGG | 0.420580 | 1_1:-77826830 | Msa0045850:CDS |
| AGATGACATCAAATCTCAAT+TGG | 0.429687 | 1_1:-77826886 | Msa0045850:CDS |
| AGGTTTCACAGCCGAAGAAA+TGG | 0.443774 | 1_1:-77826555 | Msa0045850:CDS |
| ATTACTGCTTTCGCCAAGAA+AGG | 0.453887 | 1_1:-77826575 | Msa0045850:CDS |
| AGTCCACTTACTGGCATTGA+AGG | 0.460678 | 1_1:-77825534 | Msa0045850:CDS |
| TCACCTTCAATGCCAGTAAG+TGG | 0.469881 | 1_1:+77825531 | None:intergenic |
| CATCTTAGCCCTTGCTGCTA+GGG | 0.473688 | 1_1:-77826829 | Msa0045850:CDS |
| TCAGAACAAGAGACAGTATT+GGG | 0.477115 | 1_1:+77826852 | None:intergenic |
| GAACAAAGCAGTCATGGAAA+TGG | 0.478577 | 1_1:+77827225 | None:intergenic |
| CTGGCATTGAAGGTGAAATC+AGG | 0.481698 | 1_1:-77825524 | Msa0045850:CDS |
| GATCAACAACTATTTGGTAA+TGG | 0.497432 | 1_1:-77825651 | Msa0045850:CDS |
| AGAAGATATAGCAGAAGCAT+GGG | 0.506186 | 1_1:-77825606 | Msa0045850:CDS |
| TTGATGGAGCATTGACGAAA+TGG | 0.506430 | 1_1:+77825493 | None:intergenic |
| TATTAATTACATGTATGATT+GGG | 0.510374 | 1_1:-77827379 | Msa0045850:CDS |
| TTACTTGAACAAAGCAGTCA+TGG | 0.513127 | 1_1:+77827219 | None:intergenic |
| AAGAAGATATAGCAGAAGCA+TGG | 0.514686 | 1_1:-77825607 | Msa0045850:CDS |
| TATAGCTTGGTGGACAAAGA+TGG | 0.515315 | 1_1:-77826688 | Msa0045850:intron |
| GATCAGGTGCTCACACAATA+GGG | 0.525526 | 1_1:-77825878 | Msa0045850:intron |
| GACGACACATCAAATTTCAC+AGG | 0.527948 | 1_1:-77826960 | Msa0045850:CDS |
| CGTGGTGTCGAGGAGTCAAA+AGG | 0.540660 | 1_1:+77825738 | None:intergenic |
| CAAAACTTGTTGAAAAGTAA+GGG | 0.557870 | 1_1:-77825687 | Msa0045850:CDS |
| GTCAGAACAAGAGACAGTAT+TGG | 0.568320 | 1_1:+77826851 | None:intergenic |
| TTAGCCCTTGCTGCTAGGGA+CGG | 0.572382 | 1_1:-77826825 | Msa0045850:CDS |
| CAACACCGTCCCTAGCAGCA+AGG | 0.580793 | 1_1:+77826820 | None:intergenic |
| ATGATGTATATATAGCTTGG+TGG | 0.584991 | 1_1:-77826698 | Msa0045850:intron |
| AACACCGTCCCTAGCAGCAA+GGG | 0.585075 | 1_1:+77826821 | None:intergenic |
| ATCATGAGGACGTGGTGTCG+AGG | 0.586699 | 1_1:+77825728 | None:intergenic |
| TGACATCAAATCTCAATTGG+AGG | 0.589015 | 1_1:-77826883 | Msa0045850:CDS |
| GATTAATTTAATTTAAGCAG+TGG | 0.594474 | 1_1:+77825464 | None:intergenic |
| CCAAACGCAAATTCGCTGAG+AGG | 0.600916 | 1_1:-77826921 | Msa0045850:CDS |
| TGCTAGGGACGGTGTTGCTG+AGG | 0.615933 | 1_1:-77826814 | Msa0045850:intron |
| TGTTAAGAATGAGAGTCGCA+TGG | 0.618020 | 1_1:-77827267 | Msa0045850:CDS |
| CTCACACAATAGGGCTAGTG+AGG | 0.619880 | 1_1:-77825869 | Msa0045850:CDS |
| ATGGAAATGGAGTCTAAGCA+AGG | 0.625587 | 1_1:+77827238 | None:intergenic |
| GTTAAGAATGAGAGTCGCAT+GGG | 0.627549 | 1_1:-77827266 | Msa0045850:CDS |
| TTATCAAAATCATGAGGACG+TGG | 0.652723 | 1_1:+77825720 | None:intergenic |
| TAACCATTATCAAAATCATG+AGG | 0.665603 | 1_1:+77825714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATTACATGTATGATT+GGG | - | chr1_1:77825513-77825532 | Msa0045850:CDS | 15.0% |
| !! | CATCAAATTACATTAATTAT+CGG | - | chr1_1:77826395-77826414 | Msa0045850:intron | 15.0% |
| !!! | ATATACTATTAATGACATTT+TGG | + | chr1_1:77826973-77826992 | None:intergenic | 15.0% |
| !!! | AATAGTATATAACATTTTGA+TGG | - | chr1_1:77826983-77827002 | Msa0045850:CDS | 15.0% |
| !! | TATTAATTACATGTATGATT+GGG | - | chr1_1:77825513-77825532 | Msa0045850:CDS | 15.0% |
| !! | CATCAAATTACATTAATTAT+CGG | - | chr1_1:77826395-77826414 | Msa0045850:intron | 15.0% |
| !!! | ATATACTATTAATGACATTT+TGG | + | chr1_1:77826973-77826992 | None:intergenic | 15.0% |
| !!! | AATAGTATATAACATTTTGA+TGG | - | chr1_1:77826983-77827002 | Msa0045850:CDS | 15.0% |
| !! | CTATTAATTACATGTATGAT+TGG | - | chr1_1:77825512-77825531 | Msa0045850:CDS | 20.0% |
| !! | TAAATGATGTATATATAGCT+TGG | - | chr1_1:77826191-77826210 | Msa0045850:intron | 20.0% |
| !! | CGATAATTAATGTAATTTGA+TGG | + | chr1_1:77826397-77826416 | None:intergenic | 20.0% |
| !! | TATCAATTAATATTGAACGA+AGG | - | chr1_1:77826643-77826662 | Msa0045850:CDS | 20.0% |
| !! | ATCAATTAATATTGAACGAA+GGG | - | chr1_1:77826644-77826663 | Msa0045850:CDS | 20.0% |
| !! | GTTGTTTGATTAAGATAAAA+TGG | + | chr1_1:77826791-77826810 | None:intergenic | 20.0% |
| !! | CTATTAATTACATGTATGAT+TGG | - | chr1_1:77825512-77825531 | Msa0045850:CDS | 20.0% |
| !! | TAAATGATGTATATATAGCT+TGG | - | chr1_1:77826191-77826210 | Msa0045850:intron | 20.0% |
| !! | CGATAATTAATGTAATTTGA+TGG | + | chr1_1:77826397-77826416 | None:intergenic | 20.0% |
| !! | TATCAATTAATATTGAACGA+AGG | - | chr1_1:77826643-77826662 | Msa0045850:CDS | 20.0% |
| !! | ATCAATTAATATTGAACGAA+GGG | - | chr1_1:77826644-77826663 | Msa0045850:CDS | 20.0% |
| !! | GTTGTTTGATTAAGATAAAA+TGG | + | chr1_1:77826791-77826810 | None:intergenic | 20.0% |
| ! | TGATAAAGTAACCATTTCTT+CGG | + | chr1_1:77826351-77826370 | None:intergenic | 25.0% |
| ! | TAATTTGATGGAGTAATCAA+GGG | + | chr1_1:77826385-77826404 | None:intergenic | 25.0% |
| ! | TCAATTAATATTGAACGAAG+GGG | - | chr1_1:77826645-77826664 | Msa0045850:CDS | 25.0% |
| ! | TAACCATTATCAAAATCATG+AGG | + | chr1_1:77827181-77827200 | None:intergenic | 25.0% |
| !!! | CAAAACTTGTTGAAAAGTAA+GGG | - | chr1_1:77827205-77827224 | Msa0045850:intron | 25.0% |
| ! | TGATAAAGTAACCATTTCTT+CGG | + | chr1_1:77826351-77826370 | None:intergenic | 25.0% |
| ! | TAATTTGATGGAGTAATCAA+GGG | + | chr1_1:77826385-77826404 | None:intergenic | 25.0% |
| ! | TCAATTAATATTGAACGAAG+GGG | - | chr1_1:77826645-77826664 | Msa0045850:CDS | 25.0% |
| ! | TAACCATTATCAAAATCATG+AGG | + | chr1_1:77827181-77827200 | None:intergenic | 25.0% |
| !!! | CAAAACTTGTTGAAAAGTAA+GGG | - | chr1_1:77827205-77827224 | Msa0045850:intron | 25.0% |
| !! | ATGGCTTTAAGTTCTGTTAA+AGG | - | chr1_1:77825476-77825495 | Msa0045850:CDS | 30.0% |
| GAGTTATCAGCTAATTTCTA+TGG | - | chr1_1:77825551-77825570 | Msa0045850:CDS | 30.0% | |
| TGTACAATATACATACATGC+AGG | - | chr1_1:77825886-77825905 | Msa0045850:intron | 30.0% | |
| GTACAATATACATACATGCA+GGG | - | chr1_1:77825887-77825906 | Msa0045850:intron | 30.0% | |
| AGATGACATCAAATCTCAAT+TGG | - | chr1_1:77826006-77826025 | Msa0045850:intron | 30.0% | |
| ATGATGTATATATAGCTTGG+TGG | - | chr1_1:77826194-77826213 | Msa0045850:intron | 30.0% | |
| CAAAGATGGAATGTACTATT+AGG | - | chr1_1:77826218-77826237 | Msa0045850:intron | 30.0% | |
| ! | GAAGAAATGGTTACTTTATC+AGG | - | chr1_1:77826350-77826369 | Msa0045850:intron | 30.0% |
| GTAATTTGATGGAGTAATCA+AGG | + | chr1_1:77826386-77826405 | None:intergenic | 30.0% | |
| AGGTGTCAATTAATATGAGA+AGG | + | chr1_1:77826443-77826462 | None:intergenic | 30.0% | |
| TGAATAATGCATGTAGTCAA+AGG | + | chr1_1:77826463-77826482 | None:intergenic | 30.0% | |
| GCATTATTTCAATAAGACAG+TGG | - | chr1_1:77826683-77826702 | Msa0045850:CDS | 30.0% | |
| GCATGAAGTTATATGCATTT+AGG | + | chr1_1:77826827-77826846 | None:intergenic | 30.0% | |
| TAAATGTGATCACATGTACA+TGG | - | chr1_1:77826934-77826953 | Msa0045850:CDS | 30.0% | |
| AAATGTGATCACATGTACAT+GGG | - | chr1_1:77826935-77826954 | Msa0045850:CDS | 30.0% | |
| !!! | TTTGATGGTTTTGTTTGATC+AGG | - | chr1_1:77826998-77827017 | Msa0045850:intron | 30.0% |
| !! | CCTTACTTTTCAACAAGTTT+TGG | + | chr1_1:77827207-77827226 | None:intergenic | 30.0% |
| !! | CCAAAACTTGTTGAAAAGTA+AGG | - | chr1_1:77827204-77827223 | Msa0045850:intron | 30.0% |
| GATCAACAACTATTTGGTAA+TGG | - | chr1_1:77827241-77827260 | Msa0045850:CDS | 30.0% | |
| !! | ATGGCTTTAAGTTCTGTTAA+AGG | - | chr1_1:77825476-77825495 | Msa0045850:CDS | 30.0% |
| GAGTTATCAGCTAATTTCTA+TGG | - | chr1_1:77825551-77825570 | Msa0045850:CDS | 30.0% | |
| TGTACAATATACATACATGC+AGG | - | chr1_1:77825886-77825905 | Msa0045850:intron | 30.0% | |
| GTACAATATACATACATGCA+GGG | - | chr1_1:77825887-77825906 | Msa0045850:intron | 30.0% | |
| AGATGACATCAAATCTCAAT+TGG | - | chr1_1:77826006-77826025 | Msa0045850:intron | 30.0% | |
| ATGATGTATATATAGCTTGG+TGG | - | chr1_1:77826194-77826213 | Msa0045850:intron | 30.0% | |
| CAAAGATGGAATGTACTATT+AGG | - | chr1_1:77826218-77826237 | Msa0045850:intron | 30.0% | |
| ! | GAAGAAATGGTTACTTTATC+AGG | - | chr1_1:77826350-77826369 | Msa0045850:intron | 30.0% |
| GTAATTTGATGGAGTAATCA+AGG | + | chr1_1:77826386-77826405 | None:intergenic | 30.0% | |
| AGGTGTCAATTAATATGAGA+AGG | + | chr1_1:77826443-77826462 | None:intergenic | 30.0% | |
| TGAATAATGCATGTAGTCAA+AGG | + | chr1_1:77826463-77826482 | None:intergenic | 30.0% | |
| GCATTATTTCAATAAGACAG+TGG | - | chr1_1:77826683-77826702 | Msa0045850:CDS | 30.0% | |
| GCATGAAGTTATATGCATTT+AGG | + | chr1_1:77826827-77826846 | None:intergenic | 30.0% | |
| TAAATGTGATCACATGTACA+TGG | - | chr1_1:77826934-77826953 | Msa0045850:CDS | 30.0% | |
| AAATGTGATCACATGTACAT+GGG | - | chr1_1:77826935-77826954 | Msa0045850:CDS | 30.0% | |
| !!! | TTTGATGGTTTTGTTTGATC+AGG | - | chr1_1:77826998-77827017 | Msa0045850:intron | 30.0% |
| !! | CCTTACTTTTCAACAAGTTT+TGG | + | chr1_1:77827207-77827226 | None:intergenic | 30.0% |
| !! | CCAAAACTTGTTGAAAAGTA+AGG | - | chr1_1:77827204-77827223 | Msa0045850:intron | 30.0% |
| GATCAACAACTATTTGGTAA+TGG | - | chr1_1:77827241-77827260 | Msa0045850:CDS | 30.0% | |
| ! | CTAATTGTACGAACAGCTTT+TGG | + | chr1_1:77825587-77825606 | None:intergenic | 35.0% |
| CAAAAGCTGTTCGTACAATT+AGG | - | chr1_1:77825585-77825604 | Msa0045850:CDS | 35.0% | |
| TACAATTAGGAAAGCAGTTC+AGG | - | chr1_1:77825598-77825617 | Msa0045850:CDS | 35.0% | |
| TTACTTGAACAAAGCAGTCA+TGG | + | chr1_1:77825676-77825695 | None:intergenic | 35.0% | |
| ! | TTATCAGAGTCTTTTTCCCT+CGG | - | chr1_1:77825813-77825832 | Msa0045850:CDS | 35.0% |
| TGACATCAAATCTCAATTGG+AGG | - | chr1_1:77826009-77826028 | Msa0045850:intron | 35.0% | |
| TCAGAACAAGAGACAGTATT+GGG | + | chr1_1:77826043-77826062 | None:intergenic | 35.0% | |
| AGGCCATCAAGATTCAAAAA+GGG | + | chr1_1:77826296-77826315 | None:intergenic | 35.0% | |
| AAGGCCATCAAGATTCAAAA+AGG | + | chr1_1:77826297-77826316 | None:intergenic | 35.0% | |
| ! | GTGTTTGACTTTCATACATG+TGG | + | chr1_1:77826852-77826871 | None:intergenic | 35.0% |
| TTATCAAAATCATGAGGACG+TGG | + | chr1_1:77827175-77827194 | None:intergenic | 35.0% | |
| !! | CGTCCTCATGATTTTGATAA+TGG | - | chr1_1:77827175-77827194 | Msa0045850:intron | 35.0% |
| CACTCTGATCAACAACTATT+TGG | - | chr1_1:77827235-77827254 | Msa0045850:CDS | 35.0% | |
| AAGAAGATATAGCAGAAGCA+TGG | - | chr1_1:77827285-77827304 | Msa0045850:CDS | 35.0% | |
| ! | AGAAGATATAGCAGAAGCAT+GGG | - | chr1_1:77827286-77827305 | Msa0045850:CDS | 35.0% |
| ! | CTAATTGTACGAACAGCTTT+TGG | + | chr1_1:77825587-77825606 | None:intergenic | 35.0% |
| CAAAAGCTGTTCGTACAATT+AGG | - | chr1_1:77825585-77825604 | Msa0045850:CDS | 35.0% | |
| TACAATTAGGAAAGCAGTTC+AGG | - | chr1_1:77825598-77825617 | Msa0045850:CDS | 35.0% | |
| TTACTTGAACAAAGCAGTCA+TGG | + | chr1_1:77825676-77825695 | None:intergenic | 35.0% | |
| ! | TTATCAGAGTCTTTTTCCCT+CGG | - | chr1_1:77825813-77825832 | Msa0045850:CDS | 35.0% |
| TGACATCAAATCTCAATTGG+AGG | - | chr1_1:77826009-77826028 | Msa0045850:intron | 35.0% | |
| TCAGAACAAGAGACAGTATT+GGG | + | chr1_1:77826043-77826062 | None:intergenic | 35.0% | |
| AGGCCATCAAGATTCAAAAA+GGG | + | chr1_1:77826296-77826315 | None:intergenic | 35.0% | |
| AAGGCCATCAAGATTCAAAA+AGG | + | chr1_1:77826297-77826316 | None:intergenic | 35.0% | |
| ! | GTGTTTGACTTTCATACATG+TGG | + | chr1_1:77826852-77826871 | None:intergenic | 35.0% |
| TTATCAAAATCATGAGGACG+TGG | + | chr1_1:77827175-77827194 | None:intergenic | 35.0% | |
| !! | CGTCCTCATGATTTTGATAA+TGG | - | chr1_1:77827175-77827194 | Msa0045850:intron | 35.0% |
| CACTCTGATCAACAACTATT+TGG | - | chr1_1:77827235-77827254 | Msa0045850:CDS | 35.0% | |
| AAGAAGATATAGCAGAAGCA+TGG | - | chr1_1:77827285-77827304 | Msa0045850:CDS | 35.0% | |
| ! | AGAAGATATAGCAGAAGCAT+GGG | - | chr1_1:77827286-77827305 | Msa0045850:CDS | 35.0% |
| TGTTAAGAATGAGAGTCGCA+TGG | - | chr1_1:77825625-77825644 | Msa0045850:CDS | 40.0% | |
| GTTAAGAATGAGAGTCGCAT+GGG | - | chr1_1:77825626-77825645 | Msa0045850:CDS | 40.0% | |
| ATGGAAATGGAGTCTAAGCA+AGG | + | chr1_1:77825657-77825676 | None:intergenic | 40.0% | |
| GAACAAAGCAGTCATGGAAA+TGG | + | chr1_1:77825670-77825689 | None:intergenic | 40.0% | |
| GACGACACATCAAATTTCAC+AGG | - | chr1_1:77825932-77825951 | Msa0045850:intron | 40.0% | |
| GTCAGAACAAGAGACAGTAT+TGG | + | chr1_1:77826044-77826063 | None:intergenic | 40.0% | |
| ! | TATAGCTTGGTGGACAAAGA+TGG | - | chr1_1:77826204-77826223 | Msa0045850:intron | 40.0% |
| TCAAGATTCAAAAAGGGAGC+AGG | + | chr1_1:77826290-77826309 | None:intergenic | 40.0% | |
| ! | GCTCCCTTTTTGAATCTTGA+TGG | - | chr1_1:77826290-77826309 | Msa0045850:intron | 40.0% |
| TCTTGGCGAAAGCAGTAATA+AGG | + | chr1_1:77826316-77826335 | None:intergenic | 40.0% | |
| ATTACTGCTTTCGCCAAGAA+AGG | - | chr1_1:77826317-77826336 | Msa0045850:intron | 40.0% | |
| GCATTTAGGTGACACATCTA+TGG | + | chr1_1:77826813-77826832 | None:intergenic | 40.0% | |
| ! | TGCATTTTTGCAGCAAATGC+TGG | + | chr1_1:77827094-77827113 | None:intergenic | 40.0% |
| TCTTCTTACTTGAGCGTTTG+TGG | + | chr1_1:77827272-77827291 | None:intergenic | 40.0% | |
| TCAATGCTTAGTCCACTTAC+TGG | - | chr1_1:77827349-77827368 | Msa0045850:CDS | 40.0% | |
| !! | TTGATGGAGCATTGACGAAA+TGG | + | chr1_1:77827402-77827421 | None:intergenic | 40.0% |
| ! | TAAGCAGTGGTAGTGTTTGA+TGG | + | chr1_1:77827418-77827437 | None:intergenic | 40.0% |
| TGTTAAGAATGAGAGTCGCA+TGG | - | chr1_1:77825625-77825644 | Msa0045850:CDS | 40.0% | |
| GTTAAGAATGAGAGTCGCAT+GGG | - | chr1_1:77825626-77825645 | Msa0045850:CDS | 40.0% | |
| ATGGAAATGGAGTCTAAGCA+AGG | + | chr1_1:77825657-77825676 | None:intergenic | 40.0% | |
| GAACAAAGCAGTCATGGAAA+TGG | + | chr1_1:77825670-77825689 | None:intergenic | 40.0% | |
| GACGACACATCAAATTTCAC+AGG | - | chr1_1:77825932-77825951 | Msa0045850:intron | 40.0% | |
| GTCAGAACAAGAGACAGTAT+TGG | + | chr1_1:77826044-77826063 | None:intergenic | 40.0% | |
| ! | TATAGCTTGGTGGACAAAGA+TGG | - | chr1_1:77826204-77826223 | Msa0045850:intron | 40.0% |
| TCAAGATTCAAAAAGGGAGC+AGG | + | chr1_1:77826290-77826309 | None:intergenic | 40.0% | |
| ! | GCTCCCTTTTTGAATCTTGA+TGG | - | chr1_1:77826290-77826309 | Msa0045850:intron | 40.0% |
| TCTTGGCGAAAGCAGTAATA+AGG | + | chr1_1:77826316-77826335 | None:intergenic | 40.0% | |
| ATTACTGCTTTCGCCAAGAA+AGG | - | chr1_1:77826317-77826336 | Msa0045850:intron | 40.0% | |
| GCATTTAGGTGACACATCTA+TGG | + | chr1_1:77826813-77826832 | None:intergenic | 40.0% | |
| ! | TGCATTTTTGCAGCAAATGC+TGG | + | chr1_1:77827094-77827113 | None:intergenic | 40.0% |
| TCTTCTTACTTGAGCGTTTG+TGG | + | chr1_1:77827272-77827291 | None:intergenic | 40.0% | |
| TCAATGCTTAGTCCACTTAC+TGG | - | chr1_1:77827349-77827368 | Msa0045850:CDS | 40.0% | |
| !! | TTGATGGAGCATTGACGAAA+TGG | + | chr1_1:77827402-77827421 | None:intergenic | 40.0% |
| ! | TAAGCAGTGGTAGTGTTTGA+TGG | + | chr1_1:77827418-77827437 | None:intergenic | 40.0% |
| !! | TTTTCCCTCGGATTCGAGTT+AGG | - | chr1_1:77825825-77825844 | Msa0045850:CDS | 45.0% |
| CTCTCAGCGAATTTGCGTTT+GGG | + | chr1_1:77825973-77825992 | None:intergenic | 45.0% | |
| TTCGGCTGTGAAACCTTTCT+TGG | + | chr1_1:77826333-77826352 | None:intergenic | 45.0% | |
| AGGTTTCACAGCCGAAGAAA+TGG | - | chr1_1:77826337-77826356 | Msa0045850:intron | 45.0% | |
| CACATGTACATGGGTCGTAT+TGG | - | chr1_1:77826944-77826963 | Msa0045850:CDS | 45.0% | |
| TGATCAGGTGCTCACACAAT+AGG | - | chr1_1:77827013-77827032 | Msa0045850:intron | 45.0% | |
| GATCAGGTGCTCACACAATA+GGG | - | chr1_1:77827014-77827033 | Msa0045850:intron | 45.0% | |
| !! | GGTGCAGATTTTTCAGAGCA+AGG | - | chr1_1:77827044-77827063 | Msa0045850:intron | 45.0% |
| !! | AAGCAGAGTGCCCTTTTGAA+GGG | - | chr1_1:77827113-77827132 | Msa0045850:intron | 45.0% |
| TGTCATCACCCCCTTCAAAA+GGG | + | chr1_1:77827126-77827145 | None:intergenic | 45.0% | |
| TTGTCATCACCCCCTTCAAA+AGG | + | chr1_1:77827127-77827146 | None:intergenic | 45.0% | |
| ! | AGTCCACTTACTGGCATTGA+AGG | - | chr1_1:77827358-77827377 | Msa0045850:CDS | 45.0% |
| TCACCTTCAATGCCAGTAAG+TGG | + | chr1_1:77827364-77827383 | None:intergenic | 45.0% | |
| ! | CTGGCATTGAAGGTGAAATC+AGG | - | chr1_1:77827368-77827387 | Msa0045850:CDS | 45.0% |
| !! | TTTTCCCTCGGATTCGAGTT+AGG | - | chr1_1:77825825-77825844 | Msa0045850:CDS | 45.0% |
| CTCTCAGCGAATTTGCGTTT+GGG | + | chr1_1:77825973-77825992 | None:intergenic | 45.0% | |
| TTCGGCTGTGAAACCTTTCT+TGG | + | chr1_1:77826333-77826352 | None:intergenic | 45.0% | |
| AGGTTTCACAGCCGAAGAAA+TGG | - | chr1_1:77826337-77826356 | Msa0045850:intron | 45.0% | |
| CACATGTACATGGGTCGTAT+TGG | - | chr1_1:77826944-77826963 | Msa0045850:CDS | 45.0% | |
| TGATCAGGTGCTCACACAAT+AGG | - | chr1_1:77827013-77827032 | Msa0045850:intron | 45.0% | |
| GATCAGGTGCTCACACAATA+GGG | - | chr1_1:77827014-77827033 | Msa0045850:intron | 45.0% | |
| !! | GGTGCAGATTTTTCAGAGCA+AGG | - | chr1_1:77827044-77827063 | Msa0045850:intron | 45.0% |
| !! | AAGCAGAGTGCCCTTTTGAA+GGG | - | chr1_1:77827113-77827132 | Msa0045850:intron | 45.0% |
| TGTCATCACCCCCTTCAAAA+GGG | + | chr1_1:77827126-77827145 | None:intergenic | 45.0% | |
| TTGTCATCACCCCCTTCAAA+AGG | + | chr1_1:77827127-77827146 | None:intergenic | 45.0% | |
| ! | AGTCCACTTACTGGCATTGA+AGG | - | chr1_1:77827358-77827377 | Msa0045850:CDS | 45.0% |
| TCACCTTCAATGCCAGTAAG+TGG | + | chr1_1:77827364-77827383 | None:intergenic | 45.0% | |
| ! | CTGGCATTGAAGGTGAAATC+AGG | - | chr1_1:77827368-77827387 | Msa0045850:CDS | 45.0% |
| GTCTCCTAACTCGAATCCGA+GGG | + | chr1_1:77825832-77825851 | None:intergenic | 50.0% | |
| TGTCTCCTAACTCGAATCCG+AGG | + | chr1_1:77825833-77825852 | None:intergenic | 50.0% | |
| CCTCTCAGCGAATTTGCGTT+TGG | + | chr1_1:77825974-77825993 | None:intergenic | 50.0% | |
| CCAAACGCAAATTCGCTGAG+AGG | - | chr1_1:77825971-77825990 | Msa0045850:intron | 50.0% | |
| ACATCTTAGCCCTTGCTGCT+AGG | - | chr1_1:77826062-77826081 | Msa0045850:intron | 50.0% | |
| CATCTTAGCCCTTGCTGCTA+GGG | - | chr1_1:77826063-77826082 | Msa0045850:intron | 50.0% | |
| ACACCAAACACGACACATCG+AGG | - | chr1_1:77826868-77826887 | Msa0045850:CDS | 50.0% | |
| ATGCCTCGATGTGTCGTGTT+TGG | + | chr1_1:77826874-77826893 | None:intergenic | 50.0% | |
| ! | CTCACACAATAGGGCTAGTG+AGG | - | chr1_1:77827023-77827042 | Msa0045850:intron | 50.0% |
| !! | CAAGCAGAGTGCCCTTTTGA+AGG | - | chr1_1:77827112-77827131 | Msa0045850:intron | 50.0% |
| !! | AGCAGAGTGCCCTTTTGAAG+GGG | - | chr1_1:77827114-77827133 | Msa0045850:intron | 50.0% |
| GTCTCCTAACTCGAATCCGA+GGG | + | chr1_1:77825832-77825851 | None:intergenic | 50.0% | |
| TGTCTCCTAACTCGAATCCG+AGG | + | chr1_1:77825833-77825852 | None:intergenic | 50.0% | |
| CCTCTCAGCGAATTTGCGTT+TGG | + | chr1_1:77825974-77825993 | None:intergenic | 50.0% | |
| CCAAACGCAAATTCGCTGAG+AGG | - | chr1_1:77825971-77825990 | Msa0045850:intron | 50.0% | |
| ACATCTTAGCCCTTGCTGCT+AGG | - | chr1_1:77826062-77826081 | Msa0045850:intron | 50.0% | |
| CATCTTAGCCCTTGCTGCTA+GGG | - | chr1_1:77826063-77826082 | Msa0045850:intron | 50.0% | |
| ACACCAAACACGACACATCG+AGG | - | chr1_1:77826868-77826887 | Msa0045850:CDS | 50.0% | |
| ATGCCTCGATGTGTCGTGTT+TGG | + | chr1_1:77826874-77826893 | None:intergenic | 50.0% | |
| ! | CTCACACAATAGGGCTAGTG+AGG | - | chr1_1:77827023-77827042 | Msa0045850:intron | 50.0% |
| !! | CAAGCAGAGTGCCCTTTTGA+AGG | - | chr1_1:77827112-77827131 | Msa0045850:intron | 50.0% |
| !! | AGCAGAGTGCCCTTTTGAAG+GGG | - | chr1_1:77827114-77827133 | Msa0045850:intron | 50.0% |
| TTAGCCCTTGCTGCTAGGGA+CGG | - | chr1_1:77826067-77826086 | Msa0045850:intron | 55.0% | |
| AACACCGTCCCTAGCAGCAA+GGG | + | chr1_1:77826074-77826093 | None:intergenic | 55.0% | |
| !! | GCAGAGTGCCCTTTTGAAGG+GGG | - | chr1_1:77827115-77827134 | Msa0045850:intron | 55.0% |
| ! | CGTGGTGTCGAGGAGTCAAA+AGG | + | chr1_1:77827157-77827176 | None:intergenic | 55.0% |
| ! | ATCATGAGGACGTGGTGTCG+AGG | + | chr1_1:77827167-77827186 | None:intergenic | 55.0% |
| TTAGCCCTTGCTGCTAGGGA+CGG | - | chr1_1:77826067-77826086 | Msa0045850:intron | 55.0% | |
| AACACCGTCCCTAGCAGCAA+GGG | + | chr1_1:77826074-77826093 | None:intergenic | 55.0% | |
| !! | GCAGAGTGCCCTTTTGAAGG+GGG | - | chr1_1:77827115-77827134 | Msa0045850:intron | 55.0% |
| ! | CGTGGTGTCGAGGAGTCAAA+AGG | + | chr1_1:77827157-77827176 | None:intergenic | 55.0% |
| ! | ATCATGAGGACGTGGTGTCG+AGG | + | chr1_1:77827167-77827186 | None:intergenic | 55.0% |
| CAACACCGTCCCTAGCAGCA+AGG | + | chr1_1:77826075-77826094 | None:intergenic | 60.0% | |
| !! | TGCTAGGGACGGTGTTGCTG+AGG | - | chr1_1:77826078-77826097 | Msa0045850:intron | 60.0% |
| CAACACCGTCCCTAGCAGCA+AGG | + | chr1_1:77826075-77826094 | None:intergenic | 60.0% | |
| !! | TGCTAGGGACGGTGTTGCTG+AGG | - | chr1_1:77826078-77826097 | Msa0045850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77825476 | 77827438 | 77825476 | ID=Msa0045850;Name=Msa0045850 |
| chr1_1 | mRNA | 77825476 | 77827438 | 77825476 | ID=Msa0045850-mRNA-1;Parent=Msa0045850;Name=Msa0045850-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|329 |
| chr1_1 | exon | 77827223 | 77827438 | 77827223 | ID=Msa0045850-mRNA-1:exon:26667;Parent=Msa0045850-mRNA-1 |
| chr1_1 | exon | 77826815 | 77827006 | 77826815 | ID=Msa0045850-mRNA-1:exon:26666;Parent=Msa0045850-mRNA-1 |
| chr1_1 | exon | 77826543 | 77826705 | 77826543 | ID=Msa0045850-mRNA-1:exon:26665;Parent=Msa0045850-mRNA-1 |
| chr1_1 | exon | 77825476 | 77825894 | 77825476 | ID=Msa0045850-mRNA-1:exon:26664;Parent=Msa0045850-mRNA-1 |
| chr1_1 | CDS | 77827223 | 77827438 | 77827223 | ID=Msa0045850-mRNA-1:cds;Parent=Msa0045850-mRNA-1 |
| chr1_1 | CDS | 77826815 | 77827006 | 77826815 | ID=Msa0045850-mRNA-1:cds;Parent=Msa0045850-mRNA-1 |
| chr1_1 | CDS | 77826543 | 77826705 | 77826543 | ID=Msa0045850-mRNA-1:cds;Parent=Msa0045850-mRNA-1 |
| chr1_1 | CDS | 77825476 | 77825894 | 77825476 | ID=Msa0045850-mRNA-1:cds;Parent=Msa0045850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
